Citrus Sinensis ID: 011978

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
Protein Sequence
MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Secondary Structure (PSIPRED)
ccccccccccEEEEEEccccccccccEEEcccccHHcHHHHHHHHccccccccEEEEEccccEEEcccccccccccccccEEEEEEEcccEEEEEcccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEccccccccccccccccccEEEEEEccccccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEcccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEcccccEEEEcccHHHHHEccccccEEEcccccEEEEEEccccEEEEccccccccccccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEcccccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEccccccEEEEEEcccEEcccccEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEccccccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEcccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEccEccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEcc
Coil and Loop (DISEMBL)
meietettNNVMClltdpegnplgapmyfpqnagpqQLSQIVNKLLnneeklpyafyisdhellvPLGSYLEKHKVSVEKVLSIVYqpqavfrirpvnrcsatiAGHTEAVLSvafspdgrqlasgsgdttvrlwdlntqtpmfkctghknwVLCIAWsadgkhlvsgskagelqcwdpqtgkpsgnplsghkkwitgiswepvhlnapcrrfvsaskdgdariwDVSLRKCVICLSGHTLAVTCVKwggdgviytgsqdcTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALrtgafdhtgkqysspeEMKKAALERYNKikgnaperlvsgsddftmflwepavskqpktrmtghqqlvnhvyfspdgqwvasASFDKsiklwngttgKFVAVFrghvgpvyqiswsadsrlllsgskdstlkVWDIRTQKLkqdlpghadevfavdwspdgekvasggkDRVLKLWMG
Flexible Loop (DISEMBL)
meietettnnvMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFdhtgkqysspEEMKKAALERYNKIkgnaperlvsgsdDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVfavdwspdgekvasggkdrvlklwmg
Low Complexity Region (SEG)
MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Disordered region (IsUnstruct)
**********VMCLLT***********YF********LSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW**************HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD***********************************DDFTMFLWEPAV********TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS********************
Disordered Region (DISOPRED)
*******TNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Disordered Region (DISEMBL)
********NNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH***********KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Disordered Region (DISPRO)
*EIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	473	2.2.26 [Sep-21-2011]
Q9FLX9	473	Notchless protein homolog	yes	no	0.993	0.993	0.806	0.0
Q5RFF8	485	Notchless protein homolog	yes	no	0.978	0.954	0.594	1e-170
Q9NVX2	485	Notchless protein homolog	yes	no	0.993	0.969	0.586	1e-170
Q58D20	486	Notchless protein homolog	yes	no	0.987	0.960	0.583	1e-169
Q8VEJ4	485	Notchless protein homolog	yes	no	0.978	0.954	0.588	1e-169
P25382	515	Ribosome assembly protein	yes	no	0.955	0.877	0.504	1e-139
O74855	502	Ribosome assembly protein	yes	no	0.945	0.890	0.469	1e-125
Q00808	1356	Vegetative incompatibilit	no	no	0.775	0.270	0.362	3e-56
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.771	0.239	0.348	4e-54
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.748	0.281	0.347	5e-52

>sp|Q9FLX9|NLE1_ARATH Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/471 (80%), Positives = 432/471 (91%), Gaps = 1/471 (0%)

Query: 3   IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
           ++T+    VMCLLTDPEG  LG+ MY PQ AGP QL+Q+VN+ L+NEE LPY+FY+SD E
Sbjct: 4   MDTDEGKTVMCLLTDPEGTHLGSAMYIPQKAGPLQLTQLVNRFLDNEEMLPYSFYVSDEE 63

Query: 63  LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
           LLVP+G+YLEK+KVSVEKVL+IVYQ QAVFRIRPVNRCS TIAGH EAVL V+FSPDG+Q
Sbjct: 64  LLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQ 123

Query: 123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
           LASGSGDTTVRLWDL T+TP+F C GHKNWVL +AWS DGKHLVSGSK+GE+ CW+P+ G
Sbjct: 124 LASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKG 183

Query: 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
           +  G+PL+GHKKWITGISWEPVHL++PCRRFV++SKDGDARIWD++L+K +ICLSGHTLA
Sbjct: 184 ELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHTLA 243

Query: 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           VTCVKWGGDG+IYTGSQDCTIK+WETTQGKLIRELKGHGHW+NSLALSTEY LRTGAFDH
Sbjct: 244 VTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDH 303

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
           TG+QY  P E K+ ALERYNK KG++PERLVSGSDDFTMFLWEP+VSKQPK R+TGHQQL
Sbjct: 304 TGRQY-PPNEEKQKALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQL 362

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK 422
           VNHVYFSPDG+W+ASASFDKS++LWNG TG+FV VFRGHVGPVYQ+SWSADSRLLLSGSK
Sbjct: 363 VNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSK 422

Query: 423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
           DSTLK+W+IRT+KLKQDLPGHADEVFAVDWSPDGEKV SGGKDRVLKLW G
Sbjct: 423 DSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLWKG 473

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RFF8|NLE1_PONAB Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3

 Score =  598 bits (1543), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 279/469 (59%), Positives = 348/469 (74%), Gaps = 6/469 (1%)

Query: 9   NNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLG 68
             ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AF++ D E++  LG
Sbjct: 15  QRLLVQFQDEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDAEIISSLG 74

Query: 69  SYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSG 128
             LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+ LASGSG
Sbjct: 75  KTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSG 134

Query: 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188
           DTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TGK  G  
Sbjct: 135 DTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRT 194

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH KWITG+SWEP+H N  CR   S+SKDG  RIWD +  +C   L+GHT +VTC++W
Sbjct: 195 LAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRW 254

Query: 249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308
           GGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +
Sbjct: 255 GGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVN 314

Query: 309 ------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
                 S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P TRMTGHQ L
Sbjct: 315 PQDLQGSLQELKERALSRYNLMRGQGPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQAL 374

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK 422
           +N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI+WSADSRLL+SGS 
Sbjct: 375 INQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSS 434

Query: 423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DSTLKVWD++ QKL  DLPGHADEV+AVDWSPDG++VASGGKD+ L++W
Sbjct: 435 DSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483

Pongo abelii (taxid: 9601)

>sp|Q9NVX2|NLE1_HUMAN Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=4

 Score =  598 bits (1543), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 279/476 (58%), Positives = 349/476 (73%), Gaps = 6/476 (1%)

Query: 2   EIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDH 61
           E        ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AF++ D 
Sbjct: 8   EAVARDVQRLLVQFQDEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDA 67

Query: 62  ELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGR 121
           E++  LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+
Sbjct: 68  EIVSSLGKTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGK 127

Query: 122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
            LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DG+ L SG K G++  WDP T
Sbjct: 128 YLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGRKLASGCKNGQILLWDPST 187

Query: 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL 241
           GK  G  L+GH KWITG+SWEP+H N  CR   S+SKDG  RIWD +  +C   L+GHT 
Sbjct: 188 GKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQ 247

Query: 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
           +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+
Sbjct: 248 SVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFE 307

Query: 302 HTGKQYS------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
                 +      S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P TR
Sbjct: 308 PAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLTR 367

Query: 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR 415
           MTGHQ L+N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI+WSADSR
Sbjct: 368 MTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSR 427

Query: 416 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           LL+SGS DSTLKVWD++ QKL  DLPGHADEV+AVDWSPDG++VASGGKD+ L++W
Sbjct: 428 LLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483

Homo sapiens (taxid: 9606)

>sp|Q58D20|NLE1_BOVIN Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=3

 Score =  596 bits (1536), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 276/473 (58%), Positives = 346/473 (73%), Gaps = 6/473 (1%)

Query: 5   TETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELL 64
           T     ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AFY+ D E++
Sbjct: 12  TRDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIV 71

Query: 65  VPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLA 124
             LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+ LA
Sbjct: 72  SSLGRTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLA 131

Query: 125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184
           SGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TGK 
Sbjct: 132 SGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQ 191

Query: 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244
            G  L+GH KWIT +SWEP+H N  CR   S+SKDG  R+WD +  +C   L+GH  +VT
Sbjct: 192 VGRALTGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERTLTGHAQSVT 251

Query: 245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD--- 301
           C++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+   
Sbjct: 252 CLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAE 311

Query: 302 ---HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
              +      S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P  RMTG
Sbjct: 312 ASVNAQDLRGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTG 371

Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418
           HQ L+N V FSPD + +ASASFDKSIKLW+G TGK++A  RGHV  VYQI+WSADSRLL+
Sbjct: 372 HQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLV 431

Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           SGS DSTLKVWD++ QKL  DLPGHADEV+AVDWSPDG++VASGGKD+ L++W
Sbjct: 432 SGSSDSTLKVWDVKAQKLSTDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 484

Bos taurus (taxid: 9913)

>sp|Q8VEJ4|NLE1_MOUSE Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=4

 Score =  593 bits (1530), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 276/469 (58%), Positives = 346/469 (73%), Gaps = 6/469 (1%)

Query: 9   NNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLG 68
             ++    D  G  LG+P   P +  P +L  + N LL  EE LP AFY+ D E++  LG
Sbjct: 15  QRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEEPLPLAFYVHDAEIVSSLG 74

Query: 69  SYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSG 128
             LE   V  EK++ I+YQPQAVFR+R V RC++++ GH+EAV+SVAFSP G+ LASGSG
Sbjct: 75  KTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSG 134

Query: 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188
           DTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TG   G  
Sbjct: 135 DTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQVLLWDPSTGLQVGRT 194

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH KWITG+SWEP+H+N  CR   S+SKDG  R+WD +  +C   L+GHT +VTC++W
Sbjct: 195 LTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRW 254

Query: 249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD------H 302
           GGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +
Sbjct: 255 GGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEATVN 314

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
                 S +E+K+ A  RYN ++G  PERLVSGSDDFT+FLW PA  K+P  RMTGHQ L
Sbjct: 315 AQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQAL 374

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK 422
           +N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI+WSADSRLL+SGS 
Sbjct: 375 INQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSS 434

Query: 423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DSTLKVWD++ QKL  DLPGHADEV+AVDWSPDG++VASGGKD+ L++W
Sbjct: 435 DSTLKVWDVKAQKLATDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483

Mus musculus (taxid: 10090)

>sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3

 Score =  494 bits (1272), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/472 (50%), Positives = 327/472 (69%), Gaps = 20/472 (4%)

Query: 20  GNPLGAPMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAFYI-------SDHELLVPLGSYL 71
           G+ +G  +  P     +QL +++N+L   +++ +PY F         SD    + +   L
Sbjct: 42  GDNVGGALRVPGAISEKQLEELLNQLNGTSDDPVPYTFSCTIQGKKASDPVKTIDITDNL 101

Query: 72  EKHKV-----SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP-DGRQLAS 125
               +     S E  ++++Y P+AVF+++PV R S+ IAGH   +L  AF+P    ++ +
Sbjct: 102 YSSLIKPGYNSTEDQITLLYTPRAVFKVKPVTRSSSAIAGHGSTILCSAFAPHTSSRMVT 161

Query: 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185
           G+GD T R+WD +TQTPM    GH NWVLC++WS DG+ + +GS    ++ WDP++G+  
Sbjct: 162 GAGDNTARIWDCDTQTPMHTLKGHYNWVLCVSWSPDGEVIATGSMDNTIRLWDPKSGQCL 221

Query: 186 GNPLSGHKKWITGISWEPVHLNAPCR--RFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243
           G+ L GH KWIT +SWEP+HL  P    R  S+SKDG  +IWD   R C   +SGHT +V
Sbjct: 222 GDALRGHSKWITSLSWEPIHLVKPGSKPRLASSSKDGTIKIWDTVSRVCQYTMSGHTNSV 281

Query: 244 TCVKWGGDGVIYTGSQDCTIKVWE-TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           +CVKWGG G++Y+GS D T++VW+  +QG+ I  LK H HWVN L+LST+YALR GAFDH
Sbjct: 282 SCVKWGGQGLLYSGSHDRTVRVWDINSQGRCINILKSHAHWVNHLSLSTDYALRIGAFDH 341

Query: 303 TGKQYSSPEEMKKAALERYNKI---KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359
           TGK+ S+PEE +K ALE Y KI    GN+ E +V+ SDD+TMFLW P  S +P  RMTGH
Sbjct: 342 TGKKPSTPEEAQKKALENYEKICKKNGNSEEMMVTASDDYTMFLWNPLKSTKPIARMTGH 401

Query: 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS 419
           Q+LVNHV FSPDG+++ SASFD SIKLW+G  GKF++ FRGHV  VYQ++WS+D RLL+S
Sbjct: 402 QKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFRGHVASVYQVAWSSDCRLLVS 461

Query: 420 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
            SKD+TLKVWD+RT+KL  DLPGH DEV+ VDWS DG++V SGGKD++++LW
Sbjct: 462 CSKDTTLKVWDVRTRKLSVDLPGHKDEVYTVDWSVDGKRVCSGGKDKMVRLW 513

Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits. Forms a complex with REA1 which is essential for ATP-dependent dissociation of a group of nonribosomal factors from the pre-60S particle.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74855|NLE1_SCHPO Ribosome assembly protein C18.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18.05c PE=3 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/456 (46%), Positives = 301/456 (66%), Gaps = 9/456 (1%)

Query: 25  APMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAFYISDHELLVPL-----GSYLEKHKVSV 78
           A +  P N+  +QL  ++N+LL N+++ +PY F +   +  + +      S      +  
Sbjct: 45  ASLLVPGNSSVRQLEALLNQLLENSDDPVPYNFALHHEDETIEIQDNLYTSVFHNGLMKT 104

Query: 79  EKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL 137
           E  L+++Y PQAVFR+R V RC+A++ GH   ++S  FSP    +L +GSGD T RLWD 
Sbjct: 105 EDHLTLLYTPQAVFRVRAVTRCTASMNGHDGTIISAQFSPSTSSRLVTGSGDFTARLWDC 164

Query: 138 NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT 197
           +TQTP+    GH NWV C+AW+ D   + +GS    ++ WDP+ G P G+ L  H K I 
Sbjct: 165 DTQTPIATMKGHTNWVSCVAWAPDASIIATGSMDNTIRFWDPKKGSPIGDALRRHTKPIM 224

Query: 198 GISWEPVHLNAPCRRFV--SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY 255
            + W+P+HL      ++  S SKD   RIW+V LR  +  LSGHT  +TCV+WGG   IY
Sbjct: 225 ALCWQPLHLAPDSGPYLLASGSKDNTVRIWNVKLRTLLFTLSGHTAPITCVRWGGQNWIY 284

Query: 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315
           + S D TI++W+   GK +  LKGH   VN L+LSTE+ LR+GA+DHT  +  S  + ++
Sbjct: 285 SSSYDKTIRIWDAKDGKCLHILKGHAARVNHLSLSTEHVLRSGAYDHTDFKPKSFSDERR 344

Query: 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375
            A ERY      + ERLVS SDD  + LW+P  S +P T+M GHQ++VNH  FSPDG+ +
Sbjct: 345 KAKERYEACLKQSGERLVSASDDLQLILWDPQKSTKPITKMHGHQKVVNHASFSPDGRCI 404

Query: 376 ASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK 435
           A+ASFD S++LW+G TGKF+A  RGHV  VYQ +WS DSRLL+S S+D+TLKVWD+R++K
Sbjct: 405 ATASFDSSVRLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWDVRSKK 464

Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           +K DLPGH D+VFAVDWSPDG++VASGG D+ +++W
Sbjct: 465 MKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIW 500

Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  219 bits (558), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 207/381 (54%), Gaps = 14/381 (3%)

Query: 98   NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
            N C+ T+ GH  +VLSVAFS DG+++ASGS D T+++WD  + T      GH   V  +A
Sbjct: 831  NACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVA 890

Query: 158  WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
            +S D + + SGS    ++ WD  +G  +   L GH   +  +++ P       +R  S S
Sbjct: 891  FSPDRERVASGSDDKTIKIWDAASGTCT-QTLEGHGGRVQSVAFSP-----DGQRVASGS 944

Query: 218  KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRE 276
             D   +IWD +   C   L GH  +V  V +  DG  + +GS D TIK+W+T  G   + 
Sbjct: 945  DDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQT 1004

Query: 277  LKGHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERY-----NKIKGNAPE 330
            L+GHG  V S+A S +   + +G+ D T K + +        LE +     + +     +
Sbjct: 1005 LEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064

Query: 331  RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
            R+ SGSDD T+ +W+ AVS      + GH   V  V FSPDGQ VAS S D +IK+W+  
Sbjct: 1065 RVASGSDDHTIKIWD-AVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAA 1123

Query: 391  TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAV 450
            +G       GH G V+ +++S D + + SGS D T+K+WD  +    Q L GH   V +V
Sbjct: 1124 SGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSV 1183

Query: 451  DWSPDGEKVASGGKDRVLKLW 471
             +SPDG++VASG  D+ +K+W
Sbjct: 1184 AFSPDGQRVASGSSDKTIKIW 1204

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 201/379 (53%), Gaps = 14/379 (3%)

Query: 100  CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
            C  T+ GHT  V SV FSPDG  LASG  D  VRLWD+++   ++   G+ +WV  + +S
Sbjct: 1066 CLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFS 1125

Query: 160  ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
             +G  L +GS    ++ WD  + K     L GH  W+  +++ P           S S D
Sbjct: 1126 PNGVTLANGSSDQIVRLWDI-SSKKCLYTLQGHTNWVNAVAFSP-----DGATLASGSGD 1179

Query: 220  GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK 278
               R+WD+S  KC+  L GHT  V  V +  DG  + +GS D T+++WE    K +   +
Sbjct: 1180 QTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQ 1239

Query: 279  GHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAALERY----NKIKGNAP-ERL 332
            GH  WVNS+  + + + L +G+ D T + +           + +    N +  N     L
Sbjct: 1240 GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSML 1299

Query: 333  VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392
             SGS D T+ LWE + SK   T   GH   V+ V FSPDG  +AS S D++++LW+ ++G
Sbjct: 1300 ASGSGDQTVRLWEISSSKCLHT-FQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSG 1358

Query: 393  KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW 452
            + +  F GH   V  + +S D  +L SGS D T+++W I + K    L GH + V ++ +
Sbjct: 1359 ECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVF 1418

Query: 453  SPDGEKVASGGKDRVLKLW 471
            SPDG  +ASG  D+ ++LW
Sbjct: 1419 SPDGTLLASGSDDQTVRLW 1437

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  206 bits (523), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 198/368 (53%), Gaps = 14/368 (3%)

Query: 111  VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK 170
            +LS AFSP+G+ LA+   D  VR+W++ +   +  C GH NWV  + +S DG+ L S   
Sbjct: 645  ILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGA 704

Query: 171  AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230
               ++ W  + G      L+GH+  +  +++ P           SAS D   ++WD+   
Sbjct: 705  DENVKLWSVRDG-VCIKTLTGHEHEVFSVAFHP-----DGETLASASGDKTIKLWDIQDG 758

Query: 231  KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL 289
             C+  L+GHT  V CV +  DG  + + + D TIK+W+ +QGK +R LK H  WV S+A 
Sbjct: 759  TCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAF 818

Query: 290  STE-YALRTGAFDHTGKQYS-SPEEMKKAALERYNKIKGNA----PERLVSGSDDFTMFL 343
            S +   L +G+ D T K ++    E  K  +   N +   A     + LVSGS D T+ L
Sbjct: 819  SADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKL 878

Query: 344  WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
            W+       KT + GH   V  V FSPDGQ +A  S D+S++LWN  TG+ +  + G+  
Sbjct: 879  WDCQTHICIKT-LHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTD 937

Query: 404  PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 463
                +++S D ++L SGS D T+K+WD +T K    L GH D ++ + +SPD + +AS  
Sbjct: 938  WALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASAS 997

Query: 464  KDRVLKLW 471
             D  ++LW
Sbjct: 998  TDSSVRLW 1005

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
255553492	471	Angio-associated migratory cell protein,	0.995	1.0	0.908	0.0
225450034	477	PREDICTED: notchless protein homolog [Vi	1.0	0.991	0.909	0.0
297736305	475	unnamed protein product [Vitis vinifera]	1.0	0.995	0.909	0.0
449464012	478	PREDICTED: notchless protein homolog [Cu	1.0	0.989	0.900	0.0
40557601	482	notchless-like protein [Solanum chacoens	0.985	0.966	0.890	0.0
356559633	480	PREDICTED: notchless protein homolog [Gl	1.0	0.985	0.872	0.0
356499531	480	PREDICTED: notchless protein homolog [Gl	1.0	0.985	0.870	0.0
15237273	473	Notchless protein-like protein [Arabidop	0.993	0.993	0.806	0.0
297792623	472	hypothetical protein ARALYDRAFT_918330 [	0.997	1.0	0.799	0.0
115486121	480	Os11g0594200 [Oryza sativa Japonica Grou	0.866	0.854	0.807	0.0

>gi|255553492|ref|XP_002517787.1| Angio-associated migratory cell protein, putative [Ricinus communis] gi|223543059|gb|EEF44594.1| Angio-associated migratory cell protein, putative [Ricinus communis]

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/471 (90%), Positives = 446/471 (94%)

Query: 3   IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
           +E ET NNVMC   D EG  LGAP+Y PQN+GPQQL  IVNKLLNNEEKLP++FYISD E
Sbjct: 1   MEVETVNNVMCQFADREGTALGAPLYLPQNSGPQQLQLIVNKLLNNEEKLPFSFYISDQE 60

Query: 63  LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
           LLVPL +YL+K+KVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGH EAVLSVAFSPDGRQ
Sbjct: 61  LLVPLETYLQKNKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHAEAVLSVAFSPDGRQ 120

Query: 123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
           LASGSGDTTVRLWDL+TQTPMF CTGHKNWVLCIAWS DGK+LVSGSKAGELQCWDPQTG
Sbjct: 121 LASGSGDTTVRLWDLSTQTPMFTCTGHKNWVLCIAWSPDGKYLVSGSKAGELQCWDPQTG 180

Query: 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
           KP GNPL GHKKWITGISWEPVHL+APCRRFVSASKDGDARIWDVSLRKCVI L+GHTLA
Sbjct: 181 KPFGNPLVGHKKWITGISWEPVHLSAPCRRFVSASKDGDARIWDVSLRKCVISLTGHTLA 240

Query: 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           +TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY LRTGAFDH
Sbjct: 241 ITCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYVLRTGAFDH 300

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
           TGK YSSPEEMKK ALERYNK+KGN+PERLVSGSDDFTMFLWEPAVSK PKTRMTGHQQL
Sbjct: 301 TGKTYSSPEEMKKVALERYNKMKGNSPERLVSGSDDFTMFLWEPAVSKHPKTRMTGHQQL 360

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK 422
           VNHVYFSPDGQWVASASFD+S+KLWNG TGKFVA FRGHVGPVYQISWSADSRLLLSGSK
Sbjct: 361 VNHVYFSPDGQWVASASFDRSVKLWNGVTGKFVAAFRGHVGPVYQISWSADSRLLLSGSK 420

Query: 423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
           DSTLKVWDIRTQKLKQDLPGHADEV+AVDWSPDGEKVASGGKDRVLKLWMG
Sbjct: 421 DSTLKVWDIRTQKLKQDLPGHADEVYAVDWSPDGEKVASGGKDRVLKLWMG 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450034|ref|XP_002276009.1| PREDICTED: notchless protein homolog [Vitis vinifera]

 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/475 (90%), Positives = 448/475 (94%), Gaps = 2/475 (0%)

Query: 1   MEIET--ETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYI 58
           MEIE   ET  NVMC LTDPEGN LG PMY PQNA P++L QIVNKLLNNEEKLPYAFYI
Sbjct: 3   MEIEEQGETGKNVMCQLTDPEGNHLGPPMYLPQNAAPKELQQIVNKLLNNEEKLPYAFYI 62

Query: 59  SDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP 118
           SD EL+V LG+YL+K+KVSVEKVL IVYQ QAVFRIRP+NRCS+TIAGHTEAVLSVAFSP
Sbjct: 63  SDQELVVQLGTYLQKNKVSVEKVLPIVYQLQAVFRIRPINRCSSTIAGHTEAVLSVAFSP 122

Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
           DGRQLASGSGDTTVRLWDLNTQTPM+ CTGHKNWVLCIAWS DGKHLVSGSKAGELQCWD
Sbjct: 123 DGRQLASGSGDTTVRLWDLNTQTPMYTCTGHKNWVLCIAWSPDGKHLVSGSKAGELQCWD 182

Query: 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
           PQTGKPSGNPL GHKKWITGISWEPVHL APCRRFVS+SKDGDARIWDVSLRKCVICLSG
Sbjct: 183 PQTGKPSGNPLIGHKKWITGISWEPVHLRAPCRRFVSSSKDGDARIWDVSLRKCVICLSG 242

Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
           HTLAVTCVKWGGDGVIYTGSQDCTIKVWET+QGKLIRELKGHGHWVNSLALSTEY LRTG
Sbjct: 243 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETSQGKLIRELKGHGHWVNSLALSTEYVLRTG 302

Query: 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
           AFDHTGKQY+SPEEMK+ ALERY K+KGNAPERLVSGSDDFTMFLWEPA SK PKTRMTG
Sbjct: 303 AFDHTGKQYTSPEEMKEVALERYKKMKGNAPERLVSGSDDFTMFLWEPADSKHPKTRMTG 362

Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418
           HQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFVA FRGHVGPVYQISWSADSRLLL
Sbjct: 363 HQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQISWSADSRLLL 422

Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
           SGSKDSTLKVWDIRT KLKQDLPGH DEVFAVDWSPDGEKVASGG+DRVLKLWMG
Sbjct: 423 SGSKDSTLKVWDIRTHKLKQDLPGHEDEVFAVDWSPDGEKVASGGRDRVLKLWMG 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736305|emb|CBI24943.3| unnamed protein product [Vitis vinifera]

 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/475 (90%), Positives = 448/475 (94%), Gaps = 2/475 (0%)

Query: 1   MEIET--ETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYI 58
           MEIE   ET  NVMC LTDPEGN LG PMY PQNA P++L QIVNKLLNNEEKLPYAFYI
Sbjct: 1   MEIEEQGETGKNVMCQLTDPEGNHLGPPMYLPQNAAPKELQQIVNKLLNNEEKLPYAFYI 60

Query: 59  SDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP 118
           SD EL+V LG+YL+K+KVSVEKVL IVYQ QAVFRIRP+NRCS+TIAGHTEAVLSVAFSP
Sbjct: 61  SDQELVVQLGTYLQKNKVSVEKVLPIVYQLQAVFRIRPINRCSSTIAGHTEAVLSVAFSP 120

Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
           DGRQLASGSGDTTVRLWDLNTQTPM+ CTGHKNWVLCIAWS DGKHLVSGSKAGELQCWD
Sbjct: 121 DGRQLASGSGDTTVRLWDLNTQTPMYTCTGHKNWVLCIAWSPDGKHLVSGSKAGELQCWD 180

Query: 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
           PQTGKPSGNPL GHKKWITGISWEPVHL APCRRFVS+SKDGDARIWDVSLRKCVICLSG
Sbjct: 181 PQTGKPSGNPLIGHKKWITGISWEPVHLRAPCRRFVSSSKDGDARIWDVSLRKCVICLSG 240

Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
           HTLAVTCVKWGGDGVIYTGSQDCTIKVWET+QGKLIRELKGHGHWVNSLALSTEY LRTG
Sbjct: 241 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETSQGKLIRELKGHGHWVNSLALSTEYVLRTG 300

Query: 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
           AFDHTGKQY+SPEEMK+ ALERY K+KGNAPERLVSGSDDFTMFLWEPA SK PKTRMTG
Sbjct: 301 AFDHTGKQYTSPEEMKEVALERYKKMKGNAPERLVSGSDDFTMFLWEPADSKHPKTRMTG 360

Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418
           HQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFVA FRGHVGPVYQISWSADSRLLL
Sbjct: 361 HQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQISWSADSRLLL 420

Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
           SGSKDSTLKVWDIRT KLKQDLPGH DEVFAVDWSPDGEKVASGG+DRVLKLWMG
Sbjct: 421 SGSKDSTLKVWDIRTHKLKQDLPGHEDEVFAVDWSPDGEKVASGGRDRVLKLWMG 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464012|ref|XP_004149723.1| PREDICTED: notchless protein homolog [Cucumis sativus]

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/474 (90%), Positives = 451/474 (95%), Gaps = 1/474 (0%)

Query: 1   MEIE-TETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYIS 59
           M+IE  ETTNNVM LLTDPEG PLGAPMY PQNAGPQQL Q+VNKLL+NEEKLPYAFYIS
Sbjct: 5   MDIEHRETTNNVMILLTDPEGTPLGAPMYLPQNAGPQQLQQMVNKLLSNEEKLPYAFYIS 64

Query: 60  DHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPD 119
           D EL V LG+YLEK+KVSVEKVL++VYQPQAVFRIRPV+RCSATI+GH EAVLSV+FSPD
Sbjct: 65  DQELTVSLGAYLEKNKVSVEKVLTVVYQPQAVFRIRPVSRCSATISGHAEAVLSVSFSPD 124

Query: 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179
           GRQLASGSGDTTVRLWDLNTQTP+F CTGHKNWVL IAWS DGKHLVSGSKAGEL CWDP
Sbjct: 125 GRQLASGSGDTTVRLWDLNTQTPLFTCTGHKNWVLSIAWSPDGKHLVSGSKAGELFCWDP 184

Query: 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239
            TGKP GNPL+GHKKWITGISWEP+HL+APCRRFVS+SKDGDARIWDVSL+KCVICLSGH
Sbjct: 185 LTGKPLGNPLTGHKKWITGISWEPLHLSAPCRRFVSSSKDGDARIWDVSLKKCVICLSGH 244

Query: 240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
           TLA+TCVKWGGDGVIYTGSQDCTIKVWET QGKLIRELKGHGHWVNSLALSTEY LRTGA
Sbjct: 245 TLAITCVKWGGDGVIYTGSQDCTIKVWETKQGKLIRELKGHGHWVNSLALSTEYVLRTGA 304

Query: 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359
           FDHTGKQ+SSPEEMKK ALERYNK+KG+APERLVSGSDDFTMFLWEPAVSKQPK RMTGH
Sbjct: 305 FDHTGKQFSSPEEMKKVALERYNKMKGSAPERLVSGSDDFTMFLWEPAVSKQPKIRMTGH 364

Query: 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS 419
           QQLVNHVYFSPDGQWVASASFDKS+KLWNG TGKFVA FRGHVGPVYQISWSADSRLLLS
Sbjct: 365 QQLVNHVYFSPDGQWVASASFDKSVKLWNGITGKFVAAFRGHVGPVYQISWSADSRLLLS 424

Query: 420 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
           GSKDSTLK+WDIRT KLK+DLPGHADEVFAVDWSPDGEKVASGGKD+VLKLWMG
Sbjct: 425 GSKDSTLKIWDIRTHKLKEDLPGHADEVFAVDWSPDGEKVASGGKDKVLKLWMG 478

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40557601|gb|AAR88094.1| notchless-like protein [Solanum chacoense]

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/466 (89%), Positives = 444/466 (95%)

Query: 8   TNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPL 67
           TN+V+C L DPEGNPLGA +Y P+NA P++L+Q+VNKLL+NEEKLPYAFYISD EL+V L
Sbjct: 17  TNSVICQLADPEGNPLGAALYLPENASPKELNQVVNKLLSNEEKLPYAFYISDEELVVQL 76

Query: 68  GSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGS 127
           GSYLEK+KVSVEKVL+IVYQPQAVFRIRPV RCSATIAGHTEAVLSVAFSPDGRQLASGS
Sbjct: 77  GSYLEKNKVSVEKVLTIVYQPQAVFRIRPVTRCSATIAGHTEAVLSVAFSPDGRQLASGS 136

Query: 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187
           GDTTVRLWDLNTQTP+F C GH+NWVL +AWS DGKHLVSGSKAGEL CWD QTGKP GN
Sbjct: 137 GDTTVRLWDLNTQTPLFTCQGHRNWVLSVAWSPDGKHLVSGSKAGELICWDLQTGKPLGN 196

Query: 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247
           PL+GHKKWITGISWEPVHL+APCRRFVSASKDGDARIWDV+ RKC+ICL+GHTLA+TCVK
Sbjct: 197 PLTGHKKWITGISWEPVHLSAPCRRFVSASKDGDARIWDVTTRKCLICLTGHTLAITCVK 256

Query: 248 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY 307
           WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY LR+GAFDHT K +
Sbjct: 257 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYVLRSGAFDHTNKHF 316

Query: 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY 367
           +SPEEMKK ALERYNK++GNAPERLVSGSDDFTMFLWEPAVSK PKTRMTGHQQLVNHVY
Sbjct: 317 ASPEEMKKVALERYNKMRGNAPERLVSGSDDFTMFLWEPAVSKHPKTRMTGHQQLVNHVY 376

Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427
           FSPDGQW+ASASFDKS+KLWNGTTGKFVA FRGHVGPVYQISWSADSRLLLSGSKDSTLK
Sbjct: 377 FSPDGQWIASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQISWSADSRLLLSGSKDSTLK 436

Query: 428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
           VWDIRT+KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Sbjct: 437 VWDIRTKKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 482

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559633|ref|XP_003548103.1| PREDICTED: notchless protein homolog [Glycine max]

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/480 (87%), Positives = 445/480 (92%), Gaps = 7/480 (1%)

Query: 1   MEIETET-------TNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLP 53
           ME ETET        NNVMCLLTDP+G P GAPMY PQNAGPQ L+QIVNKLLNNEEKLP
Sbjct: 1   MEAETETMVEKREIINNVMCLLTDPDGTPFGAPMYLPQNAGPQHLNQIVNKLLNNEEKLP 60

Query: 54  YAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLS 113
           YAFYIS+ ELLVPL +YL+K+KVSVEK L IV QPQA+FRIRPVNRC+ATI+GH EAVLS
Sbjct: 61  YAFYISNEELLVPLETYLQKNKVSVEKALPIVCQPQAIFRIRPVNRCTATISGHAEAVLS 120

Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
           VAFSPDG+QLASGSGDTTVR WDL TQTP++ CTGHKNWVLCIAWS DGK+LVSGSK GE
Sbjct: 121 VAFSPDGQQLASGSGDTTVRFWDLTTQTPLYTCTGHKNWVLCIAWSPDGKYLVSGSKTGE 180

Query: 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233
           L CWDPQTGK  GNPL GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL+KCV
Sbjct: 181 LICWDPQTGKSLGNPLIGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLKKCV 240

Query: 234 ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
           +CLSGHTLA+TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY
Sbjct: 241 MCLSGHTLAITCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 300

Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
            LRTGAFDHTGK+YSSPEEMKK ALERY  ++GNAPERLVSGSDDFTMFLWEP ++K PK
Sbjct: 301 VLRTGAFDHTGKKYSSPEEMKKVALERYQLMRGNAPERLVSGSDDFTMFLWEPFINKHPK 360

Query: 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD 413
           TRMTGHQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFVA FRGHVGPVYQISWSAD
Sbjct: 361 TRMTGHQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQISWSAD 420

Query: 414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
           SRLLLSGSKDSTLKVWDIRT+KLKQDLPGH+DEVF+VDWSPDGEKVASGGKD+VLKLWMG
Sbjct: 421 SRLLLSGSKDSTLKVWDIRTRKLKQDLPGHSDEVFSVDWSPDGEKVASGGKDKVLKLWMG 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499531|ref|XP_003518593.1| PREDICTED: notchless protein homolog [Glycine max]

 Score =  875 bits (2261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/480 (87%), Positives = 440/480 (91%), Gaps = 7/480 (1%)

Query: 1   MEIETET-------TNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLP 53
           ME ETET        NNVMCLLTDP+G PLGAPMY PQNAGPQ L QIVNKLLNNEEKLP
Sbjct: 1   MEDETETMVEKREIINNVMCLLTDPDGTPLGAPMYLPQNAGPQHLIQIVNKLLNNEEKLP 60

Query: 54  YAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLS 113
           Y+FYISD ELLVPL +YL K+K SVEK L IV QPQA+FRIRPVNRC+ATI+GH EAVLS
Sbjct: 61  YSFYISDEELLVPLETYLLKNKASVEKALPIVCQPQAIFRIRPVNRCTATISGHAEAVLS 120

Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
           VAFSPDGRQLASGSGDT VR WDL TQTP++ CTGHKNWVL IAWS DGK+LVSGSK GE
Sbjct: 121 VAFSPDGRQLASGSGDTAVRFWDLTTQTPLYTCTGHKNWVLSIAWSPDGKYLVSGSKTGE 180

Query: 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233
           L CWDPQTGK  GNPL GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL+KCV
Sbjct: 181 LICWDPQTGKSLGNPLIGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLKKCV 240

Query: 234 ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
           +CLSGHTLA+TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL+GHGHWVNSLALSTEY
Sbjct: 241 MCLSGHTLAITCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELRGHGHWVNSLALSTEY 300

Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
            LRTGAFDHTGKQYSSPEEMKK ALERY  ++GNAPERLVSGSDDFTMFLWEP ++K PK
Sbjct: 301 VLRTGAFDHTGKQYSSPEEMKKVALERYQAMRGNAPERLVSGSDDFTMFLWEPFINKHPK 360

Query: 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD 413
           TRMTGHQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFV  FRGHVGPVYQISWSAD
Sbjct: 361 TRMTGHQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVTAFRGHVGPVYQISWSAD 420

Query: 414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
           SRLLLSGSKDSTLKVWDIRT+KLKQDLPGHADEVF+VDWSPDGEKVASGGKD+VLKLWMG
Sbjct: 421 SRLLLSGSKDSTLKVWDIRTRKLKQDLPGHADEVFSVDWSPDGEKVASGGKDKVLKLWMG 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237273|ref|NP_200094.1| Notchless protein-like protein [Arabidopsis thaliana] gi|75334042|sp|Q9FLX9.1|NLE1_ARATH RecName: Full=Notchless protein homolog gi|10177096|dbj|BAB10430.1| Notchless protein homolog [Arabidopsis thaliana] gi|28416555|gb|AAO42808.1| At5g52820 [Arabidopsis thaliana] gi|110742893|dbj|BAE99344.1| Notchless protein homolog [Arabidopsis thaliana] gi|332008882|gb|AED96265.1| Notchless protein-like protein [Arabidopsis thaliana]

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/471 (80%), Positives = 432/471 (91%), Gaps = 1/471 (0%)

Query: 3   IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
           ++T+    VMCLLTDPEG  LG+ MY PQ AGP QL+Q+VN+ L+NEE LPY+FY+SD E
Sbjct: 4   MDTDEGKTVMCLLTDPEGTHLGSAMYIPQKAGPLQLTQLVNRFLDNEEMLPYSFYVSDEE 63

Query: 63  LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
           LLVP+G+YLEK+KVSVEKVL+IVYQ QAVFRIRPVNRCS TIAGH EAVL V+FSPDG+Q
Sbjct: 64  LLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQ 123

Query: 123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
           LASGSGDTTVRLWDL T+TP+F C GHKNWVL +AWS DGKHLVSGSK+GE+ CW+P+ G
Sbjct: 124 LASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKG 183

Query: 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
           +  G+PL+GHKKWITGISWEPVHL++PCRRFV++SKDGDARIWD++L+K +ICLSGHTLA
Sbjct: 184 ELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHTLA 243

Query: 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           VTCVKWGGDG+IYTGSQDCTIK+WETTQGKLIRELKGHGHW+NSLALSTEY LRTGAFDH
Sbjct: 244 VTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDH 303

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
           TG+QY  P E K+ ALERYNK KG++PERLVSGSDDFTMFLWEP+VSKQPK R+TGHQQL
Sbjct: 304 TGRQY-PPNEEKQKALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQL 362

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK 422
           VNHVYFSPDG+W+ASASFDKS++LWNG TG+FV VFRGHVGPVYQ+SWSADSRLLLSGSK
Sbjct: 363 VNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSK 422

Query: 423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
           DSTLK+W+IRT+KLKQDLPGHADEVFAVDWSPDGEKV SGGKDRVLKLW G
Sbjct: 423 DSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLWKG 473

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792623|ref|XP_002864196.1| hypothetical protein ARALYDRAFT_918330 [Arabidopsis lyrata subsp. lyrata] gi|297310031|gb|EFH40455.1| hypothetical protein ARALYDRAFT_918330 [Arabidopsis lyrata subsp. lyrata]

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/473 (79%), Positives = 433/473 (91%), Gaps = 1/473 (0%)

Query: 1   MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISD 60
           M ++T+    VMCLLTDPEG  LG+ MY PQNAGP QL+Q+VN+ L+NEE LPY+FY+SD
Sbjct: 1   MSMDTDEGKTVMCLLTDPEGTHLGSAMYIPQNAGPLQLTQLVNRFLDNEEMLPYSFYVSD 60

Query: 61  HELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDG 120
            ELLVP+G+YLEK+KVSVEKVL+IVYQ QAVFRIRPVNRCS TIAGH EAVL V+FSPDG
Sbjct: 61  EELLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDG 120

Query: 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180
           +QLASGSGDTTVRLWDL T+TP+F C GHKNWVL +AWS DGKHLVSGSK+GE+ CW+P+
Sbjct: 121 KQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPK 180

Query: 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT 240
            G+  G+PL+GHKKWITGISWEPVHL++PCRRFV++SKDGDARIWD++L+K +ICLSGHT
Sbjct: 181 KGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHT 240

Query: 241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300
           LAVTCV+WGGDG+IYTGSQDCTIK+WETTQGKLIRELKGHGHW+NSLALSTEY LRTGAF
Sbjct: 241 LAVTCVQWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAF 300

Query: 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ 360
           DHTG+QY  P E K+ ALERYN+ KG++PERLVSGSDDFTMFLWEP+VSKQPK R+TGHQ
Sbjct: 301 DHTGRQY-PPNEEKQKALERYNQTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQ 359

Query: 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG 420
           QLVNHVYFSPDG+W+ASASFDKS++LWNG TG+FV  FRGHVGPVYQ+SWSADSRLLLSG
Sbjct: 360 QLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTTFRGHVGPVYQVSWSADSRLLLSG 419

Query: 421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
           SKDSTLK+W+IRT+KLKQDLPGH+DEVFAVDWSPDGEKV SGGKDRVLKLW G
Sbjct: 420 SKDSTLKIWEIRTKKLKQDLPGHSDEVFAVDWSPDGEKVVSGGKDRVLKLWKG 472

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115486121|ref|NP_001068204.1| Os11g0594200 [Oryza sativa Japonica Group] gi|77551780|gb|ABA94577.1| Notchless, putative, expressed [Oryza sativa Japonica Group] gi|113645426|dbj|BAF28567.1| Os11g0594200 [Oryza sativa Japonica Group] gi|215767303|dbj|BAG99531.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616248|gb|EEE52380.1| hypothetical protein OsJ_34468 [Oryza sativa Japonica Group]

 Score =  800 bits (2065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/462 (80%), Positives = 413/462 (89%)

Query: 11  VMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSY 70
           VMC L +PEG+ LGA +Y PQN GP QL +IVN LL+NE+KLPYAFYI D EL V LG+Y
Sbjct: 18  VMCQLVNPEGDHLGAALYLPQNVGPPQLQEIVNHLLHNEDKLPYAFYIGDEELSVQLGAY 77

Query: 71  LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDT 130
           +++   +VE  L IVYQPQAVFRIRPVNRCSATIAGHTEAVL+V+FSPDGR LASGSGDT
Sbjct: 78  MQQKNANVEVTLRIVYQPQAVFRIRPVNRCSATIAGHTEAVLAVSFSPDGRCLASGSGDT 137

Query: 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS 190
           TVR WDLNTQTP+F C GHKNWVLCIAWS DG HLVSGSK+GEL  WDP+TGK  G PL+
Sbjct: 138 TVRFWDLNTQTPLFTCKGHKNWVLCIAWSPDGNHLVSGSKSGELILWDPKTGKQLGTPLT 197

Query: 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250
           GH+KWIT +SWEPVHL APCRRFVSASKDGDARIWD++ RKCVI L+GHT +VTCVKWGG
Sbjct: 198 GHRKWITAVSWEPVHLQAPCRRFVSASKDGDARIWDITTRKCVIALTGHTNSVTCVKWGG 257

Query: 251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310
           DG+IYTGS+DC IKVWET+QGKL++ L+GHGHWVNSLALSTEY LRTGA+DHTGK YS+ 
Sbjct: 258 DGLIYTGSEDCLIKVWETSQGKLVKTLQGHGHWVNSLALSTEYILRTGAYDHTGKTYSTA 317

Query: 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370
           +EMK+AAL RY K++GNAPERLVSGSDDFTMFLWEP +SKQPK RMTGHQ+LVNHVYFSP
Sbjct: 318 DEMKEAALARYKKMRGNAPERLVSGSDDFTMFLWEPTISKQPKARMTGHQKLVNHVYFSP 377

Query: 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
           DGQW+ASASFDKS+KLWNG TGKFVA FRGHV  VYQISWSADSRLLLSGSKDSTLKVWD
Sbjct: 378 DGQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQISWSADSRLLLSGSKDSTLKVWD 437

Query: 431 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472
           IRT KLKQDLPGHADEV+AVDWSPDGEKVASGGKDRVLKLWM
Sbjct: 438 IRTHKLKQDLPGHADEVYAVDWSPDGEKVASGGKDRVLKLWM 479

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
TAIR|locus:2176897	473	AT5G52820 "AT5G52820" [Arabido	0.993	0.993	0.806	3.3e-221
UNIPROTKB|Q9NVX2	485	NLE1 "Notchless protein homolo	0.961	0.938	0.603	2.9e-158
UNIPROTKB|Q58D20	486	NLE1 "Notchless protein homolo	0.993	0.967	0.581	1.3e-157
RGD|1308301	487	Nle1 "notchless homolog 1 (Dro	0.995	0.967	0.584	1.3e-157
MGI|MGI:2429770	485	Nle1 "notchless homolog 1 (Dro	0.991	0.967	0.585	2.1e-157
UNIPROTKB|I3LTI2	485	NLE1 "Uncharacterized protein"	0.961	0.938	0.598	1.1e-156
UNIPROTKB|F1NII4	498	NLE1 "Uncharacterized protein"	0.987	0.937	0.581	2.8e-153
DICTYBASE|DDB_G0295761	507	nle1 "putative notchless" [Dic	0.957	0.893	0.575	1.2e-152
UNIPROTKB|F1PUU2	436	NLE1 "Uncharacterized protein"	0.894	0.970	0.617	1.5e-152
FB|FBgn0021874	488	Nle "Notchless" [Drosophila me	0.991	0.961	0.548	1.4e-144

TAIR|locus:2176897 AT5G52820 "AT5G52820" [Arabidopsis thaliana (taxid:3702)]

 Score = 2136 (757.0 bits), Expect = 3.3e-221, P = 3.3e-221
 Identities = 380/471 (80%), Positives = 432/471 (91%)

Query:     3 IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
             ++T+    VMCLLTDPEG  LG+ MY PQ AGP QL+Q+VN+ L+NEE LPY+FY+SD E
Sbjct:     4 MDTDEGKTVMCLLTDPEGTHLGSAMYIPQKAGPLQLTQLVNRFLDNEEMLPYSFYVSDEE 63

Query:    63 LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
             LLVP+G+YLEK+KVSVEKVL+IVYQ QAVFRIRPVNRCS TIAGH EAVL V+FSPDG+Q
Sbjct:    64 LLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQ 123

Query:   123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
             LASGSGDTTVRLWDL T+TP+F C GHKNWVL +AWS DGKHLVSGSK+GE+ CW+P+ G
Sbjct:   124 LASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKG 183

Query:   183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
             +  G+PL+GHKKWITGISWEPVHL++PCRRFV++SKDGDARIWD++L+K +ICLSGHTLA
Sbjct:   184 ELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHTLA 243

Query:   243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
             VTCVKWGGDG+IYTGSQDCTIK+WETTQGKLIRELKGHGHW+NSLALSTEY LRTGAFDH
Sbjct:   244 VTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDH 303

Query:   303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
             TG+QY  P E K+ ALERYNK KG++PERLVSGSDDFTMFLWEP+VSKQPK R+TGHQQL
Sbjct:   304 TGRQYP-PNEEKQKALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQL 362

Query:   363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK 422
             VNHVYFSPDG+W+ASASFDKS++LWNG TG+FV VFRGHVGPVYQ+SWSADSRLLLSGSK
Sbjct:   363 VNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSK 422

Query:   423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
             DSTLK+W+IRT+KLKQDLPGHADEVFAVDWSPDGEKV SGGKDRVLKLW G
Sbjct:   423 DSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLWKG 473

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0051604 "protein maturation" evidence=RCA

UNIPROTKB|Q9NVX2 NLE1 "Notchless protein homolog 1" [Homo sapiens (taxid:9606)]

 Score = 1542 (547.9 bits), Expect = 2.9e-158, P = 2.9e-158
 Identities = 278/461 (60%), Positives = 346/461 (75%)

Query:    17 DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKV 76
             D  G  LG+P   P +  P +L  + N LL  E+ LP AF++ D E++  LG  LE   V
Sbjct:    23 DEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDAEIVSSLGKTLESQAV 82

Query:    77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
               EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+ LASGSGDTTVR WD
Sbjct:    83 ETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWD 142

Query:   137 LNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
             L+T+TP F C GH++WVL I+WS DG+ L SG K G++  WDP TGK  G  L+GH KWI
Sbjct:   143 LSTETPHFTCKGHRHWVLSISWSPDGRKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWI 202

Query:   197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256
             TG+SWEP+H N  CR   S+SKDG  RIWD +  +C   L+GHT +VTC++WGGDG++Y+
Sbjct:   203 TGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRWGGDGLLYS 262

Query:   257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS------SP 310
              SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +      S 
Sbjct:   263 ASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSL 322

Query:   311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370
             +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P TRMTGHQ L+N V FSP
Sbjct:   323 QELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSP 382

Query:   371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
             D + VASASFDKSIKLW+G TGK++A  RGHV  VYQI+WSADSRLL+SGS DSTLKVWD
Sbjct:   383 DSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWD 442

Query:   431 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             ++ QKL  DLPGHADEV+AVDWSPDG++VASGGKD+ L++W
Sbjct:   443 VKAQKLAMDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q58D20 NLE1 "Notchless protein homolog 1" [Bos taurus (taxid:9913)]

 Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
 Identities = 277/476 (58%), Positives = 347/476 (72%)

Query:     2 EIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDH 61
             E  T     ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AFY+ D 
Sbjct:     9 EAATRDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDA 68

Query:    62 ELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGR 121
             E++  LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+
Sbjct:    69 EIVSSLGRTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGK 128

Query:   122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
              LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP T
Sbjct:   129 YLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPST 188

Query:   182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL 241
             GK  G  L+GH KWIT +SWEP+H N  CR   S+SKDG  R+WD +  +C   L+GH  
Sbjct:   189 GKQVGRALTGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERTLTGHAQ 248

Query:   242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
             +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+
Sbjct:   249 SVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFE 308

Query:   302 HTGKQYS------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
                   +      S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P  R
Sbjct:   309 PAEASVNAQDLRGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLAR 368

Query:   356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR 415
             MTGHQ L+N V FSPD + +ASASFDKSIKLW+G TGK++A  RGHV  VYQI+WSADSR
Sbjct:   369 MTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSR 428

Query:   416 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             LL+SGS DSTLKVWD++ QKL  DLPGHADEV+AVDWSPDG++VASGGKD+ L++W
Sbjct:   429 LLVSGSSDSTLKVWDVKAQKLSTDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 484

GO:0005730 "nucleolus" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

RGD|1308301 Nle1 "notchless homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
 Identities = 281/481 (58%), Positives = 353/481 (73%)

Query:     1 MEIETETT-NNVMCLLT---DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAF 56
             +E+  E   ++V  LL    D  G  LG+P   P +  P QL  + N LL  +E LP AF
Sbjct:     5 VEVSDEAAASDVQRLLVQFQDEGGQLLGSPFDVPVDITPDQLQLVCNALLAQDEPLPLAF 64

Query:    57 YISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAF 116
             Y+ D E++  LG  LE   V  EK++ I+YQPQAVFR+R V RC++++ GH+EAV+SVAF
Sbjct:    65 YVHDAEIVSSLGKTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAF 124

Query:   117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176
             SP G+ LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  
Sbjct:   125 SPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQILL 184

Query:   177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL 236
             WDP TG   G  L+GH KWITG+SWEP+H+N  CR   S+SKDG  R+WD +  +C   L
Sbjct:   185 WDPSTGTQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERIL 244

Query:   237 SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296
             +GHT +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALR
Sbjct:   245 TGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALR 304

Query:   297 TGAFD------HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350
             TGAF+      +      S +E+K+ A  RYN ++G  PERLVSGSDDFT+FLW PA  K
Sbjct:   305 TGAFEPAEATVNAQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDK 364

Query:   351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW 410
             +P  RMTGHQ L+N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI+W
Sbjct:   365 KPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAW 424

Query:   411 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470
             SADSRLL+SGS DSTLKVWD++ QKL  DLPGHADEV+AVDWSPDG++VASGGKD+ L++
Sbjct:   425 SADSRLLVSGSSDSTLKVWDVKAQKLTTDLPGHADEVYAVDWSPDGQRVASGGKDKCLRI 484

Query:   471 W 471
             W
Sbjct:   485 W 485

GO:0001826 "inner cell mass cell differentiation" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0007219 "Notch signaling pathway" evidence=IEA;ISO

MGI|MGI:2429770 Nle1 "notchless homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 1534 (545.1 bits), Expect = 2.1e-157, P = 2.1e-157
 Identities = 280/478 (58%), Positives = 350/478 (73%)

Query:     3 IETETTNNVMCLLT---DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYIS 59
             +E     +V  LL    D  G  LG+P   P +  P +L  + N LL  EE LP AFY+ 
Sbjct:     6 VEEAAAGDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEEPLPLAFYVH 65

Query:    60 DHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPD 119
             D E++  LG  LE   V  EK++ I+YQPQAVFR+R V RC++++ GH+EAV+SVAFSP 
Sbjct:    66 DAEIVSSLGKTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPT 125

Query:   120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179
             G+ LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP
Sbjct:   126 GKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQVLLWDP 185

Query:   180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239
              TG   G  L+GH KWITG+SWEP+H+N  CR   S+SKDG  R+WD +  +C   L+GH
Sbjct:   186 STGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGH 245

Query:   240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
             T +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGA
Sbjct:   246 TQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGA 305

Query:   300 FD------HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
             F+      +      S +E+K+ A  RYN ++G  PERLVSGSDDFT+FLW PA  K+P 
Sbjct:   306 FEPAEATVNAQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPL 365

Query:   354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD 413
              RMTGHQ L+N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI+WSAD
Sbjct:   366 ARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSAD 425

Query:   414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             SRLL+SGS DSTLKVWD++ QKL  DLPGHADEV+AVDWSPDG++VASGGKD+ L++W
Sbjct:   426 SRLLVSGSSDSTLKVWDVKAQKLATDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483

GO:0001826 "inner cell mass cell differentiation" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IDA

UNIPROTKB|I3LTI2 NLE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1527 (542.6 bits), Expect = 1.1e-156, P = 1.1e-156
 Identities = 276/461 (59%), Positives = 343/461 (74%)

Query:    17 DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKV 76
             D  G  LG+P   P +  P +L  + N LL  E+ LP AFY+ D E++  LG  LE   V
Sbjct:    23 DEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIISSLGKTLESQAV 82

Query:    77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
               EKVL I+YQPQAVFR+R V RC++++ GH+EAV+SVAFSP G+ LASGSGDTTVR WD
Sbjct:    83 ETEKVLDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWD 142

Query:   137 LNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
             L+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TGK  G  L+GH KWI
Sbjct:   143 LSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWI 202

Query:   197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256
             T +SWEP+H N  CR   S+SKDG  R+WD +  +C   L+GHT +VTC++WGGDG++Y+
Sbjct:   203 TALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYS 262

Query:   257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS------SP 310
              SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +      S 
Sbjct:   263 ASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNAQDLRGSL 322

Query:   311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370
             +E+K+ AL RYN ++G   ERLVSGSDDFT+FLW PA  K+P  RMTGHQ L+N V FSP
Sbjct:   323 QELKERALSRYNLVRGRGLERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSP 382

Query:   371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
             D + +ASASFDKSIKLW+G TGK++A  RGHV  VYQI+WSADSRLL+SGS DSTLKVWD
Sbjct:   383 DSRIIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWD 442

Query:   431 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             ++ QKL  DLPGHADEV+AVDWSPDG++VASGGKD+ L++W
Sbjct:   443 VKAQKLAADLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

UNIPROTKB|F1NII4 NLE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1495 (531.3 bits), Expect = 2.8e-153, P = 2.8e-153
 Identities = 275/473 (58%), Positives = 338/473 (71%)

Query:     5 TETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELL 64
             TE    ++    D  G PLG+P   P +  P +L  + N LL  +E +P AF+  D E++
Sbjct:    24 TEDVERLLIQFRDEAGEPLGSPFDVPVSITPDKLQLVCNALLQQDEPVPLAFFFHDAEIV 83

Query:    65 VPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLA 124
             V L   L    V  EKVL I+YQPQAVFR+R V RC++++ GHTEAV+SVAFSP G+ LA
Sbjct:    84 VSLEKTLAGQAVETEKVLDIIYQPQAVFRVRAVTRCTSSLEGHTEAVISVAFSPTGKYLA 143

Query:   125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184
             SGSGDTTVR WDL+T+TP F   GH++WVL IAWS DGK L SG K  ++  WDP TG  
Sbjct:   144 SGSGDTTVRFWDLSTETPQFTAKGHRHWVLSIAWSPDGKKLASGCKNSQIFLWDPATGNQ 203

Query:   185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244
              G  L+GH KWIT + WEP+H+N  CR   SASKDG  RIWD  + +C   L+GHT +VT
Sbjct:   204 IGRVLTGHSKWITCLCWEPLHINPECRYLASASKDGSIRIWDTLMGRCDKILTGHTQSVT 263

Query:   245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD--- 301
             CVKWGGDG++Y+ SQD TIKVW +  G L R L+GH HWVN++ALST+Y LRTGAF+   
Sbjct:   264 CVKWGGDGLLYSSSQDRTIKVWRSQDGILCRTLQGHAHWVNTMALSTDYVLRTGAFEPAE 323

Query:   302 ---HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
                +      S  E+K  A +RY+K++G  PERLVSGSDDFT+FLW PA  K+P  RMTG
Sbjct:   324 ATINPQDMSGSLAELKDKAQQRYDKVRGQGPERLVSGSDDFTLFLWRPAEDKKPLERMTG 383

Query:   359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418
             HQ L+N V FSPD + +ASASFDKSIKLW G TGK++   RGHV  VYQI+WSADSRLL+
Sbjct:   384 HQALINQVLFSPDTRIIASASFDKSIKLWEGRTGKYLTSLRGHVSAVYQIAWSADSRLLV 443

Query:   419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             SGS DSTLKVWD  T+KL  DLPGHADEVFA DWSPDG++VASGGKD+ L++W
Sbjct:   444 SGSSDSTLKVWDAETKKLAIDLPGHADEVFATDWSPDGQRVASGGKDKCLRIW 496

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

DICTYBASE|DDB_G0295761 nle1 "putative notchless" [Dictyostelium discoideum (taxid:44689)]

 Score = 1489 (529.2 bits), Expect = 1.2e-152, P = 1.2e-152
 Identities = 263/457 (57%), Positives = 351/457 (76%)

Query:    17 DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKV 76
             D E +  G P+   QN   +QL  ++N LLNN+E+LPY+F+++D E+   L ++LE   +
Sbjct:    51 DSENDTTGPPINISQNVTTEQLQMLINSLLNNDEQLPYSFFVNDQEITNNLKNHLEG--L 108

Query:    77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
             S E  LSI YQPQAVFR+RPV RC+++++GHTEAVL+ AFSPDG+   S  GDTTVR+WD
Sbjct:   109 SDETTLSIYYQPQAVFRVRPVTRCASSMSGHTEAVLNCAFSPDGKGFVSVGGDTTVRIWD 168

Query:   137 LNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
             + T TP     GH NWVL +AWS D K + +    G+++ W PQTGK  G+ L GH K+I
Sbjct:   169 IYTSTPTHTLKGHTNWVLQVAWSPDSKKIATAGMEGDIRIWCPQTGKQLGSTLKGHTKFI 228

Query:   197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256
             TG+SWEP HLN  C R  S+SKD   RIWD    K ++ LSGHT++VTC+KWGG+G+IY+
Sbjct:   229 TGLSWEPFHLNPKCVRLASSSKDSTIRIWDTESCKNLMSLSGHTMSVTCLKWGGEGLIYS 288

Query:   257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
             GSQD T++V+ TT G+L+R L GH HWVN+LAL+T+Y LRTG++DHTGK+Y + EE ++ 
Sbjct:   289 GSQDRTVRVFNTTDGRLVRVLDGHAHWVNTLALNTDYVLRTGSYDHTGKEYDTLEEAQRV 348

Query:   317 ALERYNKIKGNAP--ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374
             ALERYN +K  +   E L+SGSDDFT+ +W P+V+K   +R+TGHQQL+N V FSPDG++
Sbjct:   349 ALERYNDVKAKSKGMEILISGSDDFTVIMWNPSVTKTSISRLTGHQQLINLVSFSPDGRY 408

Query:   375 VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ 434
              ASASFDKSIKLW+G +GKF+  FRGHVG VYQ+ WS+DSR L+SGSKDSTLK+WDI+T+
Sbjct:   409 FASASFDKSIKLWDGQSGKFLGNFRGHVGAVYQVCWSSDSRYLVSGSKDSTLKIWDIKTK 468

Query:   435 KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             K++++LPGHADEV+ VDWSPDG++VASG KDR+L++W
Sbjct:   469 KMEKELPGHADEVYTVDWSPDGDRVASGSKDRLLRIW 505

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1PUU2 NLE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1488 (528.9 bits), Expect = 1.5e-152, P = 1.5e-152
 Identities = 265/429 (61%), Positives = 328/429 (76%)

Query:    49 EEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHT 108
             E+ LP AFY+ D E+   LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+
Sbjct:     6 EDPLPLAFYVHDAEITSSLGKTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHS 65

Query:   109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
             EAV+SVAFSP G+ LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG
Sbjct:    66 EAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKTLASG 125

Query:   169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
              K G++  WDP TGK  G  L+GH KWITG+SWEP+H N  CR   S+SKDG  R+WD +
Sbjct:   126 CKNGQILLWDPSTGKQVGRVLAGHSKWITGLSWEPLHANPECRYMASSSKDGSVRVWDTT 185

Query:   229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288
               +C   L+GHT +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++A
Sbjct:   186 AGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMA 245

Query:   289 LSTEYALRTGAFDHTGKQYS------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342
             LST+YALRTGAF+      +      S +E+K  AL RYN ++G  PERLVSGSDDFT+F
Sbjct:   246 LSTDYALRTGAFEPAEASINAQDLQGSLQELKDRALRRYNLVRGQGPERLVSGSDDFTLF 305

Query:   343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
             +W PA  K+P  RMTGHQ L+N V FSPD + +ASASFDKSIKLW+G TGK++A  RGHV
Sbjct:   306 MWSPAEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRGHV 365

Query:   403 GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462
               VYQI+WSADSRLL+SGS DSTLKVWD++ QKL  DLPGHADEV+AVDWSPDG++VASG
Sbjct:   366 AAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHADEVYAVDWSPDGQRVASG 425

Query:   463 GKDRVLKLW 471
             GKD+ L++W
Sbjct:   426 GKDKCLRIW 434

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

FB|FBgn0021874 Nle "Notchless" [Drosophila melanogaster (taxid:7227)]

 Score = 1413 (502.5 bits), Expect = 1.4e-144, P = 1.4e-144
 Identities = 262/478 (54%), Positives = 338/478 (70%)

Query:     2 EIETE---TTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYI 58
             E +TE   T + +   L    G   G P+  P     QQL  I N LL NEE  PY F++
Sbjct:    10 ETDTEQEATPHTIQARLVSDTGEEAGPPIDLPAGITTQQLGLICNALLKNEEATPYLFFV 69

Query:    59 SDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP 118
              + E+   L   L+   V  E V+ IVYQPQAVF++RPV RC++++ GH EAV+S+ FSP
Sbjct:    70 GEDEIKKSLEDTLDLASVDTENVIDIVYQPQAVFKVRPVTRCTSSMPGHAEAVVSLNFSP 129

Query:   119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
             DG  LASGSGDTTVRLWDLNT+TP F CTGHK WVLC++W+ DGK L SG KAG +  WD
Sbjct:   130 DGAHLASGSGDTTVRLWDLNTETPHFTCTGHKQWVLCVSWAPDGKRLASGCKAGSIIIWD 189

Query:   179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
             P+TG+  G PLSGHKK I  ++WEP H +  CR+  SAS DGD RIWDV L +C++ ++G
Sbjct:   190 PETGQQKGRPLSGHKKHINCLAWEPYHRDPECRKLASASGDGDCRIWDVKLGQCLMNIAG 249

Query:   239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
             HT AVT V+WGG G+IYT S+D T+K+W    G L R   GH HWVN++ALST+Y LRTG
Sbjct:   250 HTNAVTAVRWGGAGLIYTSSKDRTVKMWRAADGILCRTFSGHAHWVNNIALSTDYVLRTG 309

Query:   299 AF----DHTGKQYS-SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
              F    D +    S S EE++++AL+RY  +  +  E LVS SDD T++LW    +K  +
Sbjct:   310 PFHPVKDRSKSHLSLSTEELQESALKRYQAVCPDEVESLVSCSDDNTLYLWRNNQNKCVE 369

Query:   354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD 413
              RMTGHQ +VN V +SPD + +ASASFDKS++LW  + G+++A FRGHV  VY ++WSAD
Sbjct:   370 -RMTGHQNVVNDVKYSPDVKLIASASFDKSVRLWRASDGQYMATFRGHVQAVYTVAWSAD 428

Query:   414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             SRL++SGSKDSTLKVW ++T+KL Q+LPGHADEVF VDW+PDG +VASGGKD+V+KLW
Sbjct:   429 SRLIVSGSKDSTLKVWSVQTKKLAQELPGHADEVFGVDWAPDGSRVASGGKDKVIKLW 486

GO:0007219 "Notch signaling pathway" evidence=ISS;TAS

GO:0005112 "Notch binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLX9	NLE1_ARATH	No assigned EC number	0.8067	0.9936	0.9936	yes	no
Q5RFF8	NLE1_PONAB	No assigned EC number	0.5948	0.9788	0.9546	yes	no
Q9NVX2	NLE1_HUMAN	No assigned EC number	0.5861	0.9936	0.9690	yes	no
Q8VEJ4	NLE1_MOUSE	No assigned EC number	0.5884	0.9788	0.9546	yes	no
O74855	NLE1_SCHPO	No assigned EC number	0.4692	0.9450	0.8904	yes	no
Q58D20	NLE1_BOVIN	No assigned EC number	0.5835	0.9873	0.9609	yes	no
P25382	NLE1_YEAST	No assigned EC number	0.5042	0.9556	0.8776	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028735001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (477 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•	•		•		0.925
	GSVIVG00027646001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (526 aa)				•	•		•		0.875
	GSVIVG00026600001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa)				•	•				0.823
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•			•		0.806
	GSVIVG00019318001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (245 aa)				•	•		•		0.796
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)			•	•				•	0.780
	GSVIVG00013990001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (900 aa)			•	•	•		•	•	0.779
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•			•		0.764
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•			•		0.762
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•			•		0.761

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	473
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-83
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-65
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-51
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-49
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-47
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-37
pfam08154	64	pfam08154, NLE, NLE (NUC135) domain	2e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-17
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-10
smart00320	40	smart00320, WD40, WD40 repeats	2e-10
smart00320	40	smart00320, WD40, WD40 repeats	8e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-09
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-08
smart00320	40	smart00320, WD40, WD40 repeats	7e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	5e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	5e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	4e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	5e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-04
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	7e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.001
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.001
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	0.002
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.002
PRK00178	430	PRK00178, tolB, translocation protein TolB; Provis	0.002
PRK04922	433	PRK04922, tolB, translocation protein TolB; Provis	0.002
pfam11768	544	pfam11768, DUF3312, Protein of unknown function (D	0.002
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  259 bits (664), Expect = 1e-83
 Identities = 126/373 (33%), Positives = 178/373 (47%), Gaps = 86/373 (23%)

Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
              T+ GHT  V  VAFSPDG+ LA+GSGD T+++WDL T   +    GH   V  +A S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
           ADG                                                    S S D
Sbjct: 61  ADGT------------------------------------------------YLASGSSD 72

Query: 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK 278
              R+WD+   +CV  L+GHT  V+ V +  DG ++ + S+D TIKVW+   GK +  L+
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132

Query: 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338
           GH  WVNS+A           F   G                           + S S D
Sbjct: 133 GHTDWVNSVA-----------FSPDGT-------------------------FVASSSQD 156

Query: 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398
            T+ LW+   + +    +TGH   VN V FSPDG+ + S+S D +IKLW+ +TGK +   
Sbjct: 157 GTIKLWDLR-TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215

Query: 399 RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK 458
           RGH   V  +++S D  LL SGS+D T++VWD+RT +  Q L GH + V ++ WSPDG++
Sbjct: 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275

Query: 459 VASGGKDRVLKLW 471
           +ASG  D  +++W
Sbjct: 276 LASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  211 bits (540), Expect = 3e-65
 Identities = 108/334 (32%), Positives = 148/334 (44%), Gaps = 86/334 (25%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
                T+ GHT  V  VA S DG  LASGS D T+RLWDL T   +   TGH ++V  +A
Sbjct: 41  GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
           +S DG  ++S S                                               S
Sbjct: 101 FSPDG-RILSSS-----------------------------------------------S 112

Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE 276
           +D   ++WDV   KC+  L GHT  V  V +  DG  + + SQD TIK+W+   GK +  
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172

Query: 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336
           L GH   VNS+           AF   G+                         +L+S S
Sbjct: 173 LTGHTGEVNSV-----------AFSPDGE-------------------------KLLSSS 196

Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
            D T+ LW+ +  K   T + GH+  VN V FSPDG  +AS S D +I++W+  TG+ V 
Sbjct: 197 SDGTIKLWDLSTGKCLGT-LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255

Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
              GH   V  ++WS D + L SGS D T+++WD
Sbjct: 256 TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  179 bits (453), Expect = 7e-51
 Identities = 123/382 (32%), Positives = 186/382 (48%), Gaps = 61/382 (15%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGH 149
           ++ +    +   T+ GH+E+V S+AFSPDG+ LASGS  D T++LWDL T  P+    GH
Sbjct: 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH 197

Query: 150 KNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA 208
            + V  +A+S DG   + SGS  G ++ WD  TGK   + LSGH   +   S+ P     
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV-SSFSPDG--- 253

Query: 209 PCRRFVSASKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
                 S S DG  R+WD+ S    +  LSGH+ +V  V +  DG ++ +GS D T+++W
Sbjct: 254 --SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Query: 267 ETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324
           +   GKL+  L   GH   V+SL+ S +           G                    
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPD-----------GSLL----------------- 343

Query: 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
                  +  GSDD T+ LW+  +      +       V  V FSPDG+ V+S S D ++
Sbjct: 344 -------VSGGSDDGTIRLWD--LRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTV 394

Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
           +LW+ +TG  +    GH   V  + +S D + L SGS D+T+++WD++T           
Sbjct: 395 RLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS------- 447

Query: 445 DEVFAVDWSPDGEKVASGGKDR 466
                V +SPDG+ +AS   D 
Sbjct: 448 -----VSFSPDGKVLASKSSDL 464

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  176 bits (445), Expect = 1e-49
 Identities = 125/375 (33%), Positives = 187/375 (49%), Gaps = 53/375 (14%)

Query: 107 HTEAVLSVAF-SPDGRQLASGSG--DTTVRLWDLNTQT-PMFKCTGHKNWVLCIAWSADG 162
           H  +V  +A  SPDG  +   S   D TV+LWDL+T    +    GH   V  +A+S DG
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 163 KHLVSGSKA-GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
           K L SGS   G ++ WD +TGKP  + L+GH   ++ +++ P           S S DG 
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPL-STLAGHTDPVSSLAFSPDGG----LLIASGSSDGT 222

Query: 222 ARIWDVSLRKCV-ICLSGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWET-TQGKLIRELK 278
            R+WD+S  K +   LSGH+   V+     G  ++ +GS D TI++W+  +   L+R L 
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLS 281

Query: 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338
           GH   V S+A S +                                     + L SGS D
Sbjct: 282 GHSSSVLSVAFSPDG------------------------------------KLLASGSSD 305

Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVA 396
            T+ LW+           + GH+  V+ + FSPDG  + S  S D +I+LW+  TGK + 
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365

Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
              GH   V  +S+S D R++ SGS D T+++WD+ T  L ++L GH   V ++D+SPDG
Sbjct: 366 TLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424

Query: 457 EKVASGGKDRVLKLW 471
           + +ASG  D  ++LW
Sbjct: 425 KSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  164 bits (417), Expect = 4e-47
 Identities = 71/173 (41%), Positives = 100/173 (57%), Gaps = 7/173 (4%)

Query: 96  PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
              +C  T+ GHT+ V SVAFSPDG  +AS S D T++LWDL T   +   TGH   V  
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           +A+S DG+ L+S S  G ++ WD  TGK  G  L GH+  +  +++ P           S
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG-TLRGHENGVNSVAFSPDGYL-----LAS 236

Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267
            S+DG  R+WD+   +CV  LSGHT +VT + W  DG  + +GS D TI++W+
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  142 bits (357), Expect = 2e-37
 Identities = 97/338 (28%), Positives = 156/338 (46%), Gaps = 25/338 (7%)

Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
           +  ++  + G           L          S   L GH+  IT I++ P         
Sbjct: 25  LNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDG-----EL 79

Query: 213 FVSASKDGDARIWDVSLRKCVIC--LSGHTLAVTCVKW----GGDGVIYTGSQDCTIKVW 266
            +S S DG  ++WD+   + +I      H  +V+ +      G   ++ + S D T+K+W
Sbjct: 80  LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139

Query: 267 E-TTQGKLIRELKGHGHWVNSLALST--EYALRTGAFDHTGKQYSSPEEMKKAALERYN- 322
           + +T GKLIR L+GH   V SLA S   +      + D T K +        + L  +  
Sbjct: 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD 199

Query: 323 -----KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377
                    +    + SGS D T+ LW+ +  K  ++ ++GH   V    FSPDG  +AS
Sbjct: 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLAS 258

Query: 378 ASFDKSIKLWN-GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436
            S D +I+LW+  ++   +    GH   V  +++S D +LL SGS D T+++WD+ T KL
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318

Query: 437 KQ--DLPGHADEVFAVDWSPDGEKVASGG-KDRVLKLW 471
                L GH   V ++ +SPDG  + SGG  D  ++LW
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356

Length = 466

>gnl|CDD|219730 pfam08154, NLE, NLE (NUC135) domain

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 11 VMCLLTDPEGNP--LGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLG 68
          V       EG+    G P   P N     LS+++N+LL NEE +P+ F I+  EL   L 
Sbjct: 2  VQVQFVTEEGDYEVPGTPFLVPTNLTRDGLSELLNQLLENEEPVPFDFLINGEELRTSLD 61

Query: 69 SYL 71
           YL
Sbjct: 62 EYL 64

This domain is located N terminal to WD40 repeats. It is found in the microtubule-associated yeast protein YTM1. Length = 64

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.4 bits (202), Expect = 8e-17
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 7/174 (4%)

Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
           +  S   +  +      +    +             +     ++       + GH+  + 
Sbjct: 10  ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSIT 69

Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRG-HVGPVYQISWSA---DSRLLLS 419
            + FSPDG+ + S S D +IKLW+   G K +    G H   V +++ S+   +S LL S
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129

Query: 420 GSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLKLW 471
            S D T+K+WD+ T  KL + L GH++ V ++ +SPDG+ +ASG   D  +KLW
Sbjct: 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLW 183

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 24/38 (63%), Positives = 27/38 (71%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
           +   T+ GHT  V SVAFSPDG  LASGS D TVR+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 23/38 (60%), Positives = 27/38 (71%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
               T+ GHT  V SVAFSPDG+ LASGS D T++LWD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 17/40 (42%), Positives = 27/40 (67%)

Query: 391 TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
           +G+ +   +GH GPV  +++S D + L SGS D T+K+WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
           GK +   +GH GPV  +++S D  LL SGS D T++VWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 329 PERLVSGSDDFTMFLWE-PAVSKQ-----PKTRMTGHQQLVNHVYFSPDGQWV-ASASFD 381
           P++L + S+D T+  W  P          P   + GH + V  V F P    V ASA  D
Sbjct: 88  PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147

Query: 382 KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP 441
             + +W+   GK V V + H   +  + W+ D  LL + SKD  L + D R   +   + 
Sbjct: 148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE 207

Query: 442 GHA 444
            HA
Sbjct: 208 AHA 210

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
           S +    + GH   V  V FSPDG+++AS S D +IKLW+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            +    + GH   V  V FSPDG  +AS S D ++++W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 433 TQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           + +L + L GH   V +V +SPDG+ +ASG  D  +KLW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 435 KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           KL + L GH   V +V +SPDG  +ASG  D  +++W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 139 TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
           +   +    GH   V  +A+S DGK+L SGS  G ++ WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
             +    GH   V  +A+S DG  L SGS  G ++ WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
            K +  L GHT  VT V +  DG ++ +GS D T++VW
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267
            + +  L GHT  VT V +  DG  + +GS D TIK+W+
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 14/102 (13%)

Query: 368 FSPDGQWVASASFDK---SIKLWNGTTGKFVAV--FRGHVG-PVYQISWSAD-SRLLLSG 420
           +SPDGQ +A  SF+     I + +  TG+   V  F G  G P    ++S D S+L +S 
Sbjct: 197 WSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAP----AFSPDGSKLAVSL 252

Query: 421 SKDSTLKVW--DIRTQKLKQDLPGHADEVFAVDWSPDGEKVA 460
           SKD    ++  D+  ++L +   G   +     WSPDG+ +A
Sbjct: 253 SKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPS-WSPDGKSIA 293

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTE--YALRTGAFDHTGKQYSSPEEMKKAA 317
           +  ++VW+  + +L+ E+K H   V S+  S+     L +G+ D + K +S  + +    
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613

Query: 318 LERYNKI-----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
           ++    I        +   L  GS D  ++ ++    K P   M GH + V++V F  D 
Sbjct: 614 IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS 672

Query: 373 QWVASASFDKSIKLWN 388
             + S+S D ++KLW+
Sbjct: 673 STLVSSSTDNTLKLWD 688

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 9/114 (7%)

Query: 366 VYFSP-DGQWVASASFDKSIKLWN-------GTTGKFVAVFRGHVGPVYQISWSADSR-L 416
           V F+P D Q + +AS D +I  W              +   +GH   V  +S+   +  +
Sbjct: 81  VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140

Query: 417 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470
           L S   D  + VWD+   K  + +  H+D++ +++W+ DG  + +  KD+ L +
Sbjct: 141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 16/169 (9%)

Query: 107 HTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKH 164
           H + V S+ +S  D   LASGS D +V+LW +N    +       N + C+ + ++ G+ 
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRS 632

Query: 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
           L  GS   ++  +D +  K     + GH K ++ + +            VS+S D   ++
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF------VDSSTLVSSSTDNTLKL 686

Query: 225 WDVSLRKCVI------CLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVW 266
           WD+S+    I         GHT     V     DG I TGS+   + V+
Sbjct: 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226
           L GH   +T +++ P           S S DG  R+WD
Sbjct: 7   LKGHTGPVTSVAFSPDG-----NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 40/129 (31%)

Query: 104 IAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
           + GHT ++L + F+P   + LASGS D T+R+W++       K                 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----------------- 112

Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
                     E++  DPQ        L GHKK I+ I W P++    C    S+  D   
Sbjct: 113 ----------EIK--DPQC------ILKGHKKKISIIDWNPMNYYIMC----SSGFDSFV 150

Query: 223 RIWDVSLRK 231
            IWD+   K
Sbjct: 151 NIWDIENEK 159

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226
           L GH   +T +++ P       +   S S DG  ++WD
Sbjct: 8   LKGHTGPVTSVAFSPDG-----KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 352 PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW- 410
           P   +    +L    + S     VAS++F+  +++W+    + V   + H   V+ I + 
Sbjct: 525 PVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS 584

Query: 411 SADSRLLLSGSKDSTLKVWDI 431
           SAD  LL SGS D ++K+W I
Sbjct: 585 SADPTLLASGSDDGSVKLWSI 605

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWNG 389
           ++ S + +  + +W+ A S Q  T M  H++ V  + Y S D   +AS S D S+KLW+ 
Sbjct: 547 QVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605

Query: 390 TTGKFVAVFRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQ-DLPGHADEV 447
             G  +   +     +  + + ++S R L  GS D  +  +D+R  KL    + GH+  V
Sbjct: 606 NQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664

Query: 448 FAVDWSPDGEKVASGGKDRVLKLW 471
             V +  D   + S   D  LKLW
Sbjct: 665 SYVRFV-DSSTLVSSSTDNTLKLW 687

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN------TQTPMFKCTGHKNWVLCI 156
           T+ GH++ V  V F  D   L S S D T++LWDL+       +TP+    GH N    +
Sbjct: 656 TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714

Query: 157 AWSADGKHLVSGSKAGEL 174
             S    ++ +GS+  E+
Sbjct: 715 GLSVSDGYIATGSETNEV 732

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 106 GHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH 164
           GHT+ V  V+F P     LAS   D  V +WD+     +     H + +  + W+ DG  
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182

Query: 165 LVSGSKAGELQCWDPQTGK 183
           L + SK  +L   DP+ G 
Sbjct: 183 LCTTSKDKKLNIIDPRDGT 201

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 400 GHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQD-------LPGHADEVFAVD 451
           G  GP+  ++++  D + L + S+D T+  W I  + L Q+       L GH  +V  V 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 452 WSPDGEKV-ASGGKDRVLKLW 471
           + P    V AS G D V+ +W
Sbjct: 133 FHPSAMNVLASAGADMVVNVW 153

Length = 493

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 368 FSPDGQWVASASFDKSIK----LWNGTTGK--FVAVFRGHVGPVYQISWSAD-SRLLLSG 420
           +SPDG+ +A  SF+          +  TGK   +  F G+ G     ++S D S+L  S 
Sbjct: 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSS 256

Query: 421 SKDSTLKVW--DIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVA 460
           S+D +  ++  D+  + L +  +  G         WSPDG K+ 
Sbjct: 257 SRDGSPDIYLMDLDGKNLPRLTNGFGINTSPS---WSPDGSKIV 297

Length = 425

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 24/156 (15%)

Query: 122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQ 180
           Q+AS + +  V++WD+     + +   H+  V  I +S AD   L SGS  G ++ W   
Sbjct: 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606

Query: 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLR--KC 232
            G                I       N  C +F S S         D +++   LR  K 
Sbjct: 607 QG--------------VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL 652

Query: 233 VIC-LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWE 267
            +C + GH+  V+ V++     + + S D T+K+W+
Sbjct: 653 PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWD 688

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 26/208 (12%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVK 247
           L+   K ++GI W     N+  +  V++S  +G  ++WDV+  + V  +  H   V  + 
Sbjct: 529 LASRSK-LSGICW-----NSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSID 582

Query: 248 WGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY--ALRTGAFDHT 303
           +      ++ +GS D ++K+W   QG  I  +K   + +  +   +E   +L  G+ DH 
Sbjct: 583 YSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADH- 640

Query: 304 GKQYSSPEEMKKAAL-------ERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-----KQ 351
            K Y       K  L       +  + ++      LVS S D T+ LW+ ++S     + 
Sbjct: 641 -KVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINET 699

Query: 352 PKTRMTGHQQLVNHVYFSPDGQWVASAS 379
           P     GH  + N V  S    ++A+ S
Sbjct: 700 PLHSFMGHTNVKNFVGLSVSDGYIATGS 727

Length = 793

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 108 TEAVLSVAFSPDGRQLA---SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH 164
            E +LS A+SPDG++LA     SG   + + DL T     K           A+S DG  
Sbjct: 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSK 247

Query: 165 L-VSGSKAGELQ 175
           L VS SK G   
Sbjct: 248 LAVSLSKDGNPD 259

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLSGSKDSTLKVWDIR-----TQKL 436
           +I+L N      V   +GH   +  + ++   S +L SGS+D T++VW+I       +++
Sbjct: 55  AIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI 114

Query: 437 KQD---LPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
           K     L GH  ++  +DW+P    +  S G D  + +W
Sbjct: 115 KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153

Length = 568

>gnl|CDD|166839 PRK00178, tolB, translocation protein TolB; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 26/120 (21%)

Query: 368 FSPDGQWVASASFDKS---IKLWNGTTGKF--VAVFRGHVG-PVYQISWSAD-SRLLLSG 420
           +SPDG+ +A  SF++    I + N  TG+   +  F G  G P    +WS D S+L    
Sbjct: 206 WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAP----AWSPDGSKLAFVL 261

Query: 421 SKDST--LKVWDIRTQKLKQDLPGHADEVFAVD----WSPDGEKVA----SGGKDRVLKL 470
           SKD    + V D+ +++L + +  H     A+D    W  DG  +      GGK ++ K+
Sbjct: 262 SKDGNPEIYVMDLASRQLSR-VTNH----PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV 316

Length = 430

>gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 23/123 (18%)

Query: 351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTG--KFVAVFRGHVG-P 404
            P+T +   + +++  + SPDG+ +A  SF++   +I + +  TG  + VA FRG  G P
Sbjct: 195 NPQTILRSAEPILSPAW-SPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAP 253

Query: 405 VYQISWSAD-SRLLLSGSKDST--LKVWDIRTQKLKQDLPGHADEVFAVD----WSPDGE 457
               S+S D  RL L+ S+D    + V D+ +++L + L  H    F +D    W+PDG+
Sbjct: 254 ----SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNH----FGIDTEPTWAPDGK 304

Query: 458 KVA 460
            + 
Sbjct: 305 SIY 307

Length = 433

>gnl|CDD|204739 pfam11768, DUF3312, Protein of unknown function (DUF3312)

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGS 169
           V S A SPD  +L  G  D+++ L+D +   T + +     +    IAW  D   ++  +
Sbjct: 261 VCSCARSPDEEKLLLGCIDSSLVLYDEHRGVTLLAQAAVIPHL---IAWHPDSAIVLVAN 317

Query: 170 KAGELQCWD 178
           + GELQC+D
Sbjct: 318 EQGELQCFD 326

This is a eukaryotic family of uncharacterized proteins. This family shows similarity to WD40 repeat proteins. Length = 544

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 362 LVNHVYFSPDGQWVASASFDKSIKLW-------NGTTGKFVAVFRGHVGPVYQISWSADS 414
           LV  + F  DG++ A+A  +K IK++       +G    +  V       +  I W++  
Sbjct: 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYI 544

Query: 415 RLLLSGSK-DSTLKVWDIRTQKLKQDLPGHADEVFAVDW-SPDGEKVASGGKDRVLKLW 471
           +  ++ S  +  ++VWD+   +L  ++  H   V+++D+ S D   +ASG  D  +KLW
Sbjct: 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	473
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.98
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG4227	609	consensus WD40 repeat protein [General function pr	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG1334	559	consensus WD40 repeat protein [General function pr	99.82
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.82
KOG2055	514	consensus WD40 repeat protein [General function pr	99.82
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.79
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.79
KOG1334	559	consensus WD40 repeat protein [General function pr	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.75
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.72
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.7
KOG0649	325	consensus WD40 repeat protein [General function pr	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
PRK11028	330	6-phosphogluconolactonase; Provisional	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.66
KOG1310	758	consensus WD40 repeat protein [General function pr	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.64
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
PRK04922	433	tolB translocation protein TolB; Provisional	99.59
KOG4227	609	consensus WD40 repeat protein [General function pr	99.59
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.59
KOG2321	703	consensus WD40 repeat protein [General function pr	99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.56
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.55
PRK03629	429	tolB translocation protein TolB; Provisional	99.54
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.53
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.52
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.5
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.5
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.5
KOG2315	566	consensus Predicted translation initiation factor	99.49
KOG2139	445	consensus WD40 repeat protein [General function pr	99.49
KOG2139	445	consensus WD40 repeat protein [General function pr	99.48
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.48
PRK04922	433	tolB translocation protein TolB; Provisional	99.47
PRK02889	427	tolB translocation protein TolB; Provisional	99.46
PRK05137	435	tolB translocation protein TolB; Provisional	99.43
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.43
KOG4547	541	consensus WD40 repeat-containing protein [General	99.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.39
KOG2321	703	consensus WD40 repeat protein [General function pr	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.38
PRK00178	430	tolB translocation protein TolB; Provisional	99.38
KOG4547	541	consensus WD40 repeat-containing protein [General	99.37
PRK04792	448	tolB translocation protein TolB; Provisional	99.36
KOG2315	566	consensus Predicted translation initiation factor	99.35
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.35
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.35
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.29
KOG2314	698	consensus Translation initiation factor 3, subunit	99.28
PRK01029	428	tolB translocation protein TolB; Provisional	99.28
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.27
PRK00178	430	tolB translocation protein TolB; Provisional	99.27
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.26
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.25
PF08154	65	NLE: NLE (NUC135) domain; InterPro: IPR012972 This	99.25
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.25
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.24
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.24
PRK04792	448	tolB translocation protein TolB; Provisional	99.23
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.2
PRK01029	428	tolB translocation protein TolB; Provisional	99.2
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.18
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.18
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.15
COG4946	668	Uncharacterized protein related to the periplasmic	99.15
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.15
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.15
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.12
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.12
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.11
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.08
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.03
COG4946	668	Uncharacterized protein related to the periplasmic	99.02
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.0
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.0
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.96
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.94
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.94
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.94
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.92
KOG2314	698	consensus Translation initiation factor 3, subunit	98.91
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.9
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.9
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.88
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.87
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.8
PRK04043	419	tolB translocation protein TolB; Provisional	98.79
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.77
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.74
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.74
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.7
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.68
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.68
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.66
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.65
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.57
KOG2695	425	consensus WD40 repeat protein [General function pr	98.56
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.54
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.53
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.52
KOG2695	425	consensus WD40 repeat protein [General function pr	98.52
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.51
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.44
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.43
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.4
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.37
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.31
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.31
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.28
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.2
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.17
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.15
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.11
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.1
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.05
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.03
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.0
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.99
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.97
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.95
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.94
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.93
KOG3621	726	consensus WD40 repeat-containing protein [General	97.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.84
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.83
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.82
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.8
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.78
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.78
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.69
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.68
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.66
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.6
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.58
PRK02888	635	nitrous-oxide reductase; Validated	97.56
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.54
PRK02888	635	nitrous-oxide reductase; Validated	97.53
KOG3621	726	consensus WD40 repeat-containing protein [General	97.48
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.44
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.39
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.32
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.3
KOG2395	644	consensus Protein involved in vacuole import and d	97.25
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.19
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.14
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.12
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.1
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.07
KOG2444	238	consensus WD40 repeat protein [General function pr	97.05
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.05
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.05
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.0
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.97
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.9
PRK13616	591	lipoprotein LpqB; Provisional	96.8
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.75
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.75
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.75
KOG2444	238	consensus WD40 repeat protein [General function pr	96.61
PRK13616	591	lipoprotein LpqB; Provisional	96.53
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.39
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.32
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.28
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.28
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.24
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.23
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.1
KOG2395	644	consensus Protein involved in vacuole import and d	96.1
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.08
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.81
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.72
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.56
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.55
COG3391	381	Uncharacterized conserved protein [Function unknow	95.33
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.22
PHA02713	557	hypothetical protein; Provisional	95.05
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.87
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.73
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.7
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.53
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.49
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.39
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.32
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.23
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.11
COG3391	381	Uncharacterized conserved protein [Function unknow	93.88
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.76
PHA02713	557	hypothetical protein; Provisional	93.74
COG5167	776	VID27 Protein involved in vacuole import and degra	93.55
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.24
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.01
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.98
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.94
KOG2247	615	consensus WD40 repeat-containing protein [General	92.42
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.22
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.69
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.49
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.47
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.25
COG5167	776	VID27 Protein involved in vacuole import and degra	91.2
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.95
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.4
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.35
PRK13684	334	Ycf48-like protein; Provisional	89.76
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.7
PRK10115	686	protease 2; Provisional	89.35
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.33
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.03
PHA03098	534	kelch-like protein; Provisional	89.03
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.88
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	88.78
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.51
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	88.33
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	87.58
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.38
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	87.15
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.15
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.6
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	86.52
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	86.4
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	85.99
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	85.7
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	85.33
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.93
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.74
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.67
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	84.32
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	83.46
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.43
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.93
KOG2247	615	consensus WD40 repeat-containing protein [General	82.83
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.72
PF13449	326	Phytase-like: Esterase-like activity of phytase	82.49
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.24
PHA03098	534	kelch-like protein; Provisional	82.13
PF14727	418	PHTB1_N: PTHB1 N-terminus	81.07
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	80.76
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	80.5
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.34
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	80.01

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.1e-101  Score=652.22  Aligned_cols=468  Identities=65%  Similarity=1.146  Sum_probs=454.9

Q ss_pred             cCCcceEEEEEEC---CCCCcCCCeeeecCCCCHHHHHHHHHHHhcC-CCCcceEEEecCeeecccHHhHHHhcCCCccc
Q 011978            5 TETTNNVMCLLTD---PEGNPLGAPMYFPQNAGPQQLSQIVNKLLNN-EEKLPYAFYISDHELLVPLGSYLEKHKVSVEK   80 (473)
Q Consensus         5 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (473)
                      ..|..+|++.|..   ..+.....++.+|..+.+.||..++|+|+.+ +++.|+.|++.+.++..+|++.++...++.|.
T Consensus         8 ~~~~~~i~~~l~~~~~d~g~~~g~~~~vp~~is~~qL~~l~n~ll~~s~dp~pysf~v~~~ei~~~l~~tL~~~~v~te~   87 (480)
T KOG0271|consen    8 PAELVTIPLLLVSVATDTGENEGSALLVPGDISTLQLELLCNQLLGNSDDPVPYSFFVTEIEILDSLETTLEKQNVSTED   87 (480)
T ss_pred             ccccccchhhcccccCCcccccCCceeccccCCHHHHHHHHHHHhhcccCCcceEEEecchHHHHHHHHHHhhcccchhh
Confidence            3456788888865   4567788999999999999999999999998 89999999999999999999999999999999


Q ss_pred             EEEEEEEeceeEEEeecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECC
Q 011978           81 VLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA  160 (473)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  160 (473)
                      ++.+.|+|+.+++++|..+|...+.||.++|.|++|+|+|.+||+|++|.++|+||+.+..|++.+++|..+|.|++|+|
T Consensus        88 ~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP  167 (480)
T KOG0271|consen   88 VLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP  167 (480)
T ss_pred             eeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc
Q 011978          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT  240 (473)
Q Consensus       161 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~  240 (473)
                      ||+.||+|+.||+|++||+++|++....+.+|+++|++++|.|.+..++|+++++++.||+++|||+..+.++..+.||+
T Consensus       168 Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT  247 (480)
T KOG0271|consen  168 DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT  247 (480)
T ss_pred             CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhh
Q 011978          241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (473)
Q Consensus       241 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (473)
                      .+|+|+.|.++|++++|+.|++|++|+...|++++.+++|.++|+.++.+.++.+++++|++.+....+..+....++.+
T Consensus       248 ~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r  327 (480)
T KOG0271|consen  248 ASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER  327 (480)
T ss_pred             cceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             hhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC
Q 011978          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (473)
Q Consensus       321 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~  400 (473)
                      ++......++++++|++|+++++|++...+++..+|.+|+..|+.+.||||+++||++|.|++|++||.++|+.+..|+|
T Consensus       328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG  407 (480)
T KOG0271|consen  328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG  407 (480)
T ss_pred             HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence            99998888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       401 h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |-++|+.++||.|.++|++||.|.++++||+++.++...++||.++|++++|+|||+.+++|+.|+.+++|.
T Consensus       408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999999999999999999999999999999999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.7e-55  Score=375.49  Aligned_cols=371  Identities=33%  Similarity=0.532  Sum_probs=314.9

Q ss_pred             cceEEEEEECC--CCCcCCCeeeecCCCCHHHHHHHHHHHhcCC----CCcceEEEecCeeecccHHhHHHhcCCCcccE
Q 011978            8 TNNVMCLLTDP--EGNPLGAPMYFPQNAGPQQLSQIVNKLLNNE----EKLPYAFYISDHELLVPLGSYLEKHKVSVEKV   81 (473)
Q Consensus         8 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (473)
                      ..||++.|.++  ++.++..|+++|++.++.+|++++|+|+..+    .+.||+|++.|+.+|++|.+|+++++++.|.+
T Consensus         5 ~~qvqvrF~Tk~e~~aVpD~p~~iP~~~~r~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~   84 (423)
T KOG0313|consen    5 SGQVQVRFFTKNEDYAVPDVPFAIPTSVERYGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEI   84 (423)
T ss_pred             cceEEEEEEecccccCCCCcceeccCcceEccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhhe
Confidence            46999999876  4789999999999999999999999999987    78999999999999999999999999999999


Q ss_pred             EEEEEEeceeEEEeecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCC
Q 011978           82 LSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD  161 (473)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~d  161 (473)
                      ++|+|..    .+.++.....  .-|.+.|.++...  ++++++|++||.+|+||... +......+|.++|.+++|--.
T Consensus        85 leIEYv~----~~~aP~pl~~--~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~~~~~Ght~~ik~v~~v~~  155 (423)
T KOG0313|consen   85 LEIEYVE----AITAPKPLQC--FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSIKTIVGHTGPIKSVAWVIK  155 (423)
T ss_pred             eEEEEEE----ecCCCCcccc--ccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceEEEEecCCcceeeeEEEec
Confidence            9999963    2223222221  2399999999887  88999999999999999865 456678899999998887532


Q ss_pred             ---CCeEEEEecCCeEEEeeCCCCcccc---ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC------
Q 011978          162 ---GKHLVSGSKAGELQCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL------  229 (473)
Q Consensus       162 ---g~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~------  229 (473)
                         ...+++++.|.++++|.++.++...   ....||...|.++...+     ++.+|++|+.|.+++||+...      
T Consensus       156 n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-----sgtr~~SgS~D~~lkiWs~~~~~~~~~  230 (423)
T KOG0313|consen  156 NSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-----SGTRFCSGSWDTMLKIWSVETDEEDEL  230 (423)
T ss_pred             CCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-----CCCeEEeecccceeeecccCCCccccc
Confidence               3369999999999999988765322   22359999999987654     678999999999999999321      


Q ss_pred             -------------------CeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978          230 -------------------RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (473)
Q Consensus       230 -------------------~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  290 (473)
                                         +..+..+.||..+|.++.|.+.+.++++++|.+|+.||+.+++.+.++..           
T Consensus       231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-----------  299 (423)
T KOG0313|consen  231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-----------  299 (423)
T ss_pred             cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-----------
Confidence                               23466788999999999999988999999999999999998876543321           


Q ss_pred             ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC
Q 011978          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp  370 (473)
                                                                                           ...+++++++|
T Consensus       300 ---------------------------------------------------------------------~ksl~~i~~~~  310 (423)
T KOG0313|consen  300 ---------------------------------------------------------------------NKSLNCISYSP  310 (423)
T ss_pred             ---------------------------------------------------------------------CcceeEeeccc
Confidence                                                                                 13467899999


Q ss_pred             CCcEEEEEECCCcEEEEeCCCCc---eEEEeeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCc-eeecccccCC
Q 011978          371 DGQWVASASFDKSIKLWNGTTGK---FVAVFRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQK-LKQDLPGHAD  445 (473)
Q Consensus       371 ~g~~lasgs~d~~v~lwd~~~~~---~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~h~~  445 (473)
                      ..++||+|+.|..+++||.+++.   ....|.+|.+.|.++.|+|.. .+|++||.|+++++||+++.+ .+..+.+|.+
T Consensus       311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D  390 (423)
T KOG0313|consen  311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND  390 (423)
T ss_pred             ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc
Confidence            99999999999999999999763   456789999999999999955 579999999999999999877 8899999999


Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978          446 EVFAVDWSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       446 ~i~~l~~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      +|.+++|+. +..++|||.|++|+++.+
T Consensus       391 Kvl~vdW~~-~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  391 KVLSVDWNE-GGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             eEEEEeccC-CceEEeccCcceEEEecc
Confidence            999999985 679999999999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.9e-51  Score=354.22  Aligned_cols=283  Identities=28%  Similarity=0.506  Sum_probs=263.9

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCC--CCeEEEEecCCeEEEeeCCCC
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg~i~iwd~~~~  182 (473)
                      .|-+.+|..+.|++|++.|||||.+|.++||+..+...+..+.+|...|.++.|+|.  +..+++|+.||++++|+..+.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            467889999999999999999999999999999998888999999999999999996  668999999999999999876


Q ss_pred             ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC
Q 011978          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC  261 (473)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~  261 (473)
                      ..+ ..+.+|...|..++|+|     ++.+++|++.|.+-++||++++..+....||...|.+++|.+|| ++++|+.|.
T Consensus       252 ~~l-~~l~gH~~RVs~VafHP-----sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~  325 (459)
T KOG0272|consen  252 TPL-QDLEGHLARVSRVAFHP-----SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS  325 (459)
T ss_pred             cch-hhhhcchhhheeeeecC-----CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence            544 45889999999999988     67899999999999999999999999999999999999999999 567899999


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      .-+|||+++|+++..+.                                                               
T Consensus       326 ~~RvWDlRtgr~im~L~---------------------------------------------------------------  342 (459)
T KOG0272|consen  326 LGRVWDLRTGRCIMFLA---------------------------------------------------------------  342 (459)
T ss_pred             hhheeecccCcEEEEec---------------------------------------------------------------
Confidence            99999999998775443                                                               


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec-CCCEEEEE
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA-DSRLLLSG  420 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~  420 (473)
                                      +|.+.|.+|+|+|+|..|||||.|++++|||++..+.+.++.+|.+-|+.|.|+| .|++|+|+
T Consensus       343 ----------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta  406 (459)
T KOG0272|consen  343 ----------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA  406 (459)
T ss_pred             ----------------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence                            4556788899999999999999999999999999999999999999999999999 78999999


Q ss_pred             eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       421 s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |.|++++||.-.+..+++.+.||.++|.+++.++|+.+++|++.|+++|+|.
T Consensus       407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999999999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-49  Score=337.94  Aligned_cols=286  Identities=33%  Similarity=0.585  Sum_probs=255.8

Q ss_pred             eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (473)
Q Consensus       143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i  222 (473)
                      ...+.+|..+|.|+.|+|+|++|++|+.|.++++||+.+..+. ....+|..+|.+++|+|     ++..+++|+.||+|
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-~t~KgH~~WVlcvawsP-----Dgk~iASG~~dg~I  181 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-FTCKGHKNWVLCVAWSP-----DGKKIASGSKDGSI  181 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-eeecCCccEEEEEEECC-----CcchhhccccCCeE
Confidence            3456799999999999999999999999999999999886654 35789999999999998     67899999999999


Q ss_pred             EEEECCCCeEE-EEecCccccEEEEEecC-----C-CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978          223 RIWDVSLRKCV-ICLSGHTLAVTCVKWGG-----D-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (473)
Q Consensus       223 ~iwd~~~~~~~-~~~~~h~~~v~~~~~~~-----~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (473)
                      ++||..++.++ ..+.||...|++++|.|     . ..+++++.||+++|||+..++++..+.+|...|.|+.+--    
T Consensus       182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG----  257 (480)
T KOG0271|consen  182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG----  257 (480)
T ss_pred             EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC----
Confidence            99999988765 57899999999999964     2 3689999999999999999999999999999999997642    


Q ss_pred             eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEEC------
Q 011978          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS------  369 (473)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s------  369 (473)
                                                       ...+++++.|++|++|+... ......+.+|..+|+.++.+      
T Consensus       258 ---------------------------------~gliySgS~DrtIkvw~a~d-G~~~r~lkGHahwvN~lalsTdy~LR  303 (480)
T KOG0271|consen  258 ---------------------------------EGLIYSGSQDRTIKVWRALD-GKLCRELKGHAHWVNHLALSTDYVLR  303 (480)
T ss_pred             ---------------------------------CceEEecCCCceEEEEEccc-hhHHHhhcccchheeeeeccchhhhh
Confidence                                             34689999999999999755 34456788999999998876      


Q ss_pred             -----CCCc-------------------------EEEEEECCCcEEEEeCCC-CceEEEeeCCccCEEEEEEecCCCEEE
Q 011978          370 -----PDGQ-------------------------WVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQISWSADSRLLL  418 (473)
Q Consensus       370 -----p~g~-------------------------~lasgs~d~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~g~~l~  418 (473)
                           |.++                         .|++|++|.++.+|+... .+++....+|...|+.|.||||++++|
T Consensus       304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA  383 (480)
T KOG0271|consen  304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA  383 (480)
T ss_pred             ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence                 3333                         499999999999999764 457788899999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       419 s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++|.|..|++||.++|+.+.+++||-+.|+.++||.|.+.|+|||.|.++++|.
T Consensus       384 SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~  437 (480)
T KOG0271|consen  384 SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWD  437 (480)
T ss_pred             EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEE
Confidence            999999999999999999999999999999999999999999999999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-47  Score=316.00  Aligned_cols=293  Identities=29%  Similarity=0.479  Sum_probs=265.2

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      .+|+||...|.++.|++|+++|+++|.||.+.|||.-+..+...++-...+|..++|+|.|+.+|+|+.|+...||++.+
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            57899999999999999999999999999999999988877777777889999999999999999999999999999864


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCC
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC  261 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~  261 (473)
                      .+..                                  +.+        +....+.+|...+.|+.|.+|+.|+|++.|.
T Consensus       129 ~d~~----------------------------------g~~--------~v~r~l~gHtgylScC~f~dD~~ilT~SGD~  166 (343)
T KOG0286|consen  129 RDAE----------------------------------GNV--------RVSRELAGHTGYLSCCRFLDDNHILTGSGDM  166 (343)
T ss_pred             cccc----------------------------------ccc--------eeeeeecCccceeEEEEEcCCCceEecCCCc
Confidence            3211                                  111        1123467899999999999999999999999


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      ++.+||+++|+.+..+.+|...|.+++++|.                                   .++.+++|+-|+..
T Consensus       167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~-----------------------------------~~ntFvSg~cD~~a  211 (343)
T KOG0286|consen  167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPS-----------------------------------DGNTFVSGGCDKSA  211 (343)
T ss_pred             eEEEEEcccceEEEEecCCcccEEEEecCCC-----------------------------------CCCeEEecccccce
Confidence            9999999999999999999999999998874                                   24569999999999


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC--CccCEEEEEEecCCCEEEE
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG--HVGPVYQISWSADSRLLLS  419 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s  419 (473)
                      ++||.+.+ .....+.+|...|++|+|.|+|.-+++|+.|++.|+||++..+.+..|..  -..+|++|+||..|++|.+
T Consensus       212 klWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa  290 (343)
T KOG0286|consen  212 KLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA  290 (343)
T ss_pred             eeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence            99999866 66788999999999999999999999999999999999999998888863  3468999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          420 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       420 ~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |..|.++.+||.-.++....+.||..+|.+|..+|||..+++||.|.++|||.
T Consensus       291 gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  291 GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999999999999999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.5e-43  Score=312.98  Aligned_cols=388  Identities=23%  Similarity=0.414  Sum_probs=305.2

Q ss_pred             CcccEEEEEEEeceeEEEe-------------ecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee
Q 011978           77 SVEKVLSIVYQPQAVFRIR-------------PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM  143 (473)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~  143 (473)
                      +..+++...+.|.+.+|+-             |+-+...++..|+.-|+|++|+|||.++|+++.||+|.+||-.+++.+
T Consensus       146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v  225 (603)
T KOG0318|consen  146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV  225 (603)
T ss_pred             cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE
Confidence            4556677788888877763             344556677889999999999999999999999999999999999988


Q ss_pred             EEEc---CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC--CcEEEEEeceeccCCCCceEEEeeC
Q 011978          144 FKCT---GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK--KWITGISWEPVHLNAPCRRFVSASK  218 (473)
Q Consensus       144 ~~~~---~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~~~~~~s~s~  218 (473)
                      ..+.   +|.+.|.+++|+||++++++++.|.+++|||..+.+.......+.+  +...++-|.       ...+++.+-
T Consensus       226 g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-------kd~lItVSl  298 (603)
T KOG0318|consen  226 GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-------KDHLITVSL  298 (603)
T ss_pred             EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-------CCeEEEEEc
Confidence            8776   8999999999999999999999999999999998876554433333  333444454       247999999


Q ss_pred             CCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeee-eccCceEEEEEecccceee
Q 011978          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALR  296 (473)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~  296 (473)
                      +|++.+++......+..+.||...|++++.++++ .|++|+.||.|.-|+..+|..-+.. +.|...|..++.+....+.
T Consensus       299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~  378 (603)
T KOG0318|consen  299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF  378 (603)
T ss_pred             CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence            9999999999999999999999999999999988 6999999999999999988765544 6788888888877744444


Q ss_pred             eccccCCCcccCC-------HH------HHHHHH-----------------Hhh-----------hh---cccCCCCceE
Q 011978          297 TGAFDHTGKQYSS-------PE------EMKKAA-----------------LER-----------YN---KIKGNAPERL  332 (473)
Q Consensus       297 ~~~~~~~~~~~~~-------~~------~~~~~~-----------------~~~-----------~~---~~~~~~~~~l  332 (473)
                      +..+|..-+....       ..      +.+...                 +.+           +.   .........+
T Consensus       379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v  458 (603)
T KOG0318|consen  379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV  458 (603)
T ss_pred             EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence            4444433221100       00      000000                 000           00   0011223468


Q ss_pred             EEecCCceEEEEeCCCCC-CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE-EeeCCccCEEEEEE
Q 011978          333 VSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQISW  410 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~  410 (473)
                      +.|+.|+.+++|.+.... ........|...|++++||||+.|||+|...+.+.+||..+.+... .+.-|++.|++++|
T Consensus       459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aW  538 (603)
T KOG0318|consen  459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAW  538 (603)
T ss_pred             EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEe
Confidence            899999999999987644 4445677899999999999999999999999999999999887632 33459999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCC-ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          411 SADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       411 sp~g~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +|+..++|+||.|..|.||++... +.+.....|...|+.|.|-.+ ..++|.|.|..||+|.
T Consensus       539 sP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~  600 (603)
T KOG0318|consen  539 SPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWN  600 (603)
T ss_pred             CCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEec
Confidence            999999999999999999999753 334444568888999999854 6899999999999997

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2e-44  Score=332.13  Aligned_cols=341  Identities=27%  Similarity=0.479  Sum_probs=282.4

Q ss_pred             cccccccccC-CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCC--eEEEEecCCe
Q 011978           97 VNRCSATIAG-HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGE  173 (473)
Q Consensus        97 ~~~~~~~~~g-h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~s~~~dg~  173 (473)
                      ..++...... |+.+|..++|+|.|..||+|+.|+.++|||+..+.....+++|.+.|.++.|.|+-.  .|++|..|++
T Consensus        93 tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~  172 (775)
T KOG0319|consen   93 TGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGT  172 (775)
T ss_pred             cchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCce
Confidence            3466677777 999999999999999999999999999999999999999999999999999999754  5889999999


Q ss_pred             EEEeeCCCCccccccCCCcCCcEEEEEeceecc-----------------------------------------CCCCce
Q 011978          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL-----------------------------------------NAPCRR  212 (473)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-----------------------------------------~~~~~~  212 (473)
                      +++||++++..-......|...|+++.+.+...                                         +..+.+
T Consensus       173 v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~  252 (775)
T KOG0319|consen  173 VRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEY  252 (775)
T ss_pred             EEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceE
Confidence            999999977654445677888888887765311                                         001246


Q ss_pred             EEEeeCCCcEEEEECCCCeEE-----------------------------------------------------------
Q 011978          213 FVSASKDGDARIWDVSLRKCV-----------------------------------------------------------  233 (473)
Q Consensus       213 ~~s~s~dg~i~iwd~~~~~~~-----------------------------------------------------------  233 (473)
                      +.|+|.+|.+++||.++++++                                                           
T Consensus       253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l  332 (775)
T KOG0319|consen  253 IITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL  332 (775)
T ss_pred             EEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec
Confidence            778888888888876543211                                                           


Q ss_pred             --------------------------EEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC----ceeeeeeccCc
Q 011978          234 --------------------------ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG----KLIRELKGHGH  282 (473)
Q Consensus       234 --------------------------~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~----~~~~~~~~~~~  282 (473)
                                                ..+.||...|.++....+| .|++|+.|.++++|.+.++    -++....+|..
T Consensus       333 G~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~  412 (775)
T KOG0319|consen  333 GPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN  412 (775)
T ss_pred             CCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence                                      0124777888888744455 7889999999999976433    23445577888


Q ss_pred             eEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC----Ce----e
Q 011978          283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PK----T  354 (473)
Q Consensus       283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~----~  354 (473)
                      .|.+++.+..                                   ....++++|.|.++++|++...+.    ..    .
T Consensus       413 svgava~~~~-----------------------------------~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~  457 (775)
T KOG0319|consen  413 SVGAVAGSKL-----------------------------------GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY  457 (775)
T ss_pred             ccceeeeccc-----------------------------------CccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence            8877776432                                   245799999999999999876321    11    1


Q ss_pred             eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978          355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       355 ~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                      ....|...|++++++|+.++|||||.|++.++|+++....+.++.||...|++|.|+|..+.+||+|.|++|+||.+.+.
T Consensus       458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF  537 (775)
T ss_pred             HHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          435 KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       435 ~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .+++++.||...|..+.|-.+|+.|+|++.||.|++|+
T Consensus       538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence            99999999999999999999999999999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.3e-45  Score=308.27  Aligned_cols=308  Identities=29%  Similarity=0.459  Sum_probs=274.9

Q ss_pred             ecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978           96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (473)
Q Consensus        96 ~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~  175 (473)
                      |+.++...+.||..+|+.+-|+|+-..+++++.|++|++||..+++....+++|.+.|.++.|+..|++|++++.|-.++
T Consensus        96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen   96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK  175 (406)
T ss_pred             CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence            33456667889999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-E
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I  254 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l  254 (473)
                      +||.++.-.-...+.+|...|.++.|.|.     +..+++++.|.+|+.||+.++.|++++.+|...|..++.+.||. +
T Consensus       176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~-----gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~  250 (406)
T KOG0295|consen  176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPL-----GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTII  250 (406)
T ss_pred             heeHHHHHHHHHHhcCcccceeeEEEEec-----CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEE
Confidence            99987643333457789999999999995     36899999999999999999999999999999999999999995 6


Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      ++++.|.++++|-+.++++...+..|+++|.++++.+...+...                                ..++
T Consensus       251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i--------------------------------~~at  298 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI--------------------------------SEAT  298 (406)
T ss_pred             EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch--------------------------------hhcc
Confidence            78999999999999999888889999999999998775221000                                0011


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS  414 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g  414 (473)
                      ++.                                ..++++++++.|++|++||+.+|.++.++.+|.++|.+++|+|.|
T Consensus       299 ~~~--------------------------------~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G  346 (406)
T KOG0295|consen  299 GST--------------------------------NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG  346 (406)
T ss_pred             CCC--------------------------------CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC
Confidence            110                                046789999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          415 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +||+++.+|+++++||++.++.+.++..|...+++++|+.+..+++||+-|.++++|.
T Consensus       347 kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  347 KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            9999999999999999999999999999999999999999999999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.1e-45  Score=315.06  Aligned_cols=247  Identities=31%  Similarity=0.547  Sum_probs=227.9

Q ss_pred             cccccccCCcccEEEEEECCC--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978           99 RCSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~--~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i  176 (473)
                      ....++.||++.|.++.|+|.  +..||||+.||++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+.++
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl  287 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL  287 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence            345678999999999999998  568999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EE
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY  255 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~  255 (473)
                      ||+.++.... ...||...|.+++|+|     ++..++|||.|..-+|||+++++++..+.||..+|.++.|+|+|+ ++
T Consensus       288 WD~~tk~ElL-~QEGHs~~v~~iaf~~-----DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lA  361 (459)
T KOG0272|consen  288 WDLETKSELL-LQEGHSKGVFSIAFQP-----DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLA  361 (459)
T ss_pred             cccccchhhH-hhcccccccceeEecC-----CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEe
Confidence            9999987553 4689999999999987     677899999999999999999999999999999999999999996 88


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      ||+.|++++|||++..+.+                                                             
T Consensus       362 Tgs~Dnt~kVWDLR~r~~l-------------------------------------------------------------  380 (459)
T KOG0272|consen  362 TGSSDNTCKVWDLRMRSEL-------------------------------------------------------------  380 (459)
T ss_pred             ecCCCCcEEEeeecccccc-------------------------------------------------------------
Confidence            9999999999998764332                                                             


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS  414 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g  414 (473)
                                        ..+.+|.+.|+.|.|+| .|.+|+|+|.|+++++|...++.++..+.||.+.|.++.++||+
T Consensus       381 ------------------y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~  442 (459)
T KOG0272|consen  381 ------------------YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS  442 (459)
T ss_pred             ------------------eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence                              23456788899999999 78999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEE
Q 011978          415 RLLLSGSKDSTLKVWD  430 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd  430 (473)
                      +++++++.|.++++|.
T Consensus       443 ~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  443 QAIATSSFDRTIKLWR  458 (459)
T ss_pred             ceEEEeccCceeeecc
Confidence            9999999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-43  Score=326.21  Aligned_cols=371  Identities=27%  Similarity=0.456  Sum_probs=299.4

Q ss_pred             ccHHhHHHhcCC-CcccEEEEEEEece----------eEEEee--cccccccccCCcccEEEEEECCCCC--eEEEEeCC
Q 011978           65 VPLGSYLEKHKV-SVEKVLSIVYQPQA----------VFRIRP--VNRCSATIAGHTEAVLSVAFSPDGR--QLASGSGD  129 (473)
Q Consensus        65 ~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~gh~~~V~~~~~sp~~~--~lat~s~d  129 (473)
                      .+.+.+++.-+. +..+++..++.|..          ..+++.  .+.|...++||.+.|.++.|+|+-.  .|++|..|
T Consensus        91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D  170 (775)
T KOG0319|consen   91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD  170 (775)
T ss_pred             cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence            344566666555 67778888888754          223443  3568899999999999999999865  48899999


Q ss_pred             CeEEEEeCCCCce-eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc----------------------
Q 011978          130 TTVRLWDLNTQTP-MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG----------------------  186 (473)
Q Consensus       130 ~~i~iwd~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~----------------------  186 (473)
                      +++++||+.+... +.....|...|++++|++|+..+++++.|..+.+||+.+.+...                      
T Consensus       171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~  250 (775)
T KOG0319|consen  171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG  250 (775)
T ss_pred             ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence            9999999986654 66778899999999999999999999999999999974321100                      


Q ss_pred             ---------------------------c---------------------------------------cCCCcCCcEEEEE
Q 011978          187 ---------------------------N---------------------------------------PLSGHKKWITGIS  200 (473)
Q Consensus       187 ---------------------------~---------------------------------------~~~~~~~~v~~i~  200 (473)
                                                 +                                       .+.|.++.|..+.
T Consensus       251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~  330 (775)
T KOG0319|consen  251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK  330 (775)
T ss_pred             eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence                                       0                                       0012222222222


Q ss_pred             ecee-------------------------------------ccCCCCceEEEeeCCCcEEEEECCCC----eEEEEecCc
Q 011978          201 WEPV-------------------------------------HLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGH  239 (473)
Q Consensus       201 ~~~~-------------------------------------~~~~~~~~~~s~s~dg~i~iwd~~~~----~~~~~~~~h  239 (473)
                      |...                                     .....+..++||+.|.++++|.+..+    .++....||
T Consensus       331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH  410 (775)
T KOG0319|consen  331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH  410 (775)
T ss_pred             ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc
Confidence            2110                                     00012347899999999999977443    345566799


Q ss_pred             cccEEEEEecCCC--eEEEeecCCeEEEEECCCCcee---------eeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978          240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLI---------RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (473)
Q Consensus       240 ~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (473)
                      ...|.+++++..+  .+++++.|+++++|++...+.-         .....|+..|++++++|+.               
T Consensus       411 ~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd---------------  475 (775)
T KOG0319|consen  411 TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND---------------  475 (775)
T ss_pred             ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC---------------
Confidence            9999999997554  6899999999999998763211         1235578889999888763               


Q ss_pred             CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (473)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd  388 (473)
                                           ..+++||.|++.++|++. .......+.||...+.+|.|+|..+.+||+|.|++|+||.
T Consensus       476 ---------------------kLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~  533 (775)
T KOG0319|consen  476 ---------------------KLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS  533 (775)
T ss_pred             ---------------------ceEEecccccceeeeccc-CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence                                 358999999999999987 4455678899999999999999999999999999999999


Q ss_pred             CCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978          389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL  468 (473)
Q Consensus       389 ~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i  468 (473)
                      +.+..++.+|.||...|..+.|-.+|..|+|++.||-|++|++.++.+..++.+|.++|++++-+|+..+++||+.|+.|
T Consensus       534 is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i  613 (775)
T KOG0319|consen  534 ISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRI  613 (775)
T ss_pred             eccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Eecc
Q 011978          469 KLWM  472 (473)
Q Consensus       469 ~~w~  472 (473)
                      .+|.
T Consensus       614 ~~wk  617 (775)
T KOG0319|consen  614 IFWK  617 (775)
T ss_pred             EEee
Confidence            9995

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.4e-42  Score=293.85  Aligned_cols=328  Identities=24%  Similarity=0.400  Sum_probs=262.0

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ..++..|+++|++++.+|+.+++|||++|....+|++.++.....+.+|+..|+++.||.||.+||+|+.+|.|++|+..
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            45678899999999999999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeec
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~  259 (473)
                      ++....... .--..+.=+.|+|     ....|+.|+.||.+.+|.+.++...+.+.||+.+++|-.|.|+| .++++..
T Consensus       137 tg~~~~~~~-~e~~dieWl~WHp-----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~  210 (399)
T KOG0296|consen  137 TGGEQWKLD-QEVEDIEWLKWHP-----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD  210 (399)
T ss_pred             cCceEEEee-cccCceEEEEecc-----cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence            887554332 1222334445555     45689999999999999999988888999999999999999999 5899999


Q ss_pred             CCeEEEEECCCCceeeeeeccCc-eEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          260 DCTIKVWETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      ||+|++|+..+++.+..+.+..+ ...++.+..                                    .+..++.|+.+
T Consensus       211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~------------------------------------~~~~~~~g~~e  254 (399)
T KOG0296|consen  211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNL------------------------------------AGSTLTKGNSE  254 (399)
T ss_pred             CceEEEEecCCCceeEEecccccCcCCcccccc------------------------------------ccceeEeccCC
Confidence            99999999999988877653221 111111111                                    12234455555


Q ss_pred             ceEEEEeCCCCCCC-------eeeecCcccceeE---EEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEE
Q 011978          339 FTMFLWEPAVSKQP-------KTRMTGHQQLVNH---VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (473)
Q Consensus       339 ~~i~iwd~~~~~~~-------~~~~~~~~~~v~~---v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v  408 (473)
                      +.+++-....++..       ......+...+.+   +.++..-.+.|+|+.||+|-|||+.+.++...+. |..+|..+
T Consensus       255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l  333 (399)
T KOG0296|consen  255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKL  333 (399)
T ss_pred             ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEE
Confidence            54444432222111       0111233334444   4555567789999999999999998877666665 88899999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       409 ~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .|-+ ..+|++++.||.|+.||.++|+++.++.||...|++++++|++++++|+|.|++.+||.
T Consensus       334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             EEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            9998 77999999999999999999999999999999999999999999999999999999985

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-42  Score=282.60  Aligned_cols=284  Identities=29%  Similarity=0.542  Sum_probs=240.0

Q ss_pred             cccccCCcccEEEEEECCC-CCeEEEEeCCCeEEEEeCC-----CCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978          101 SATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLN-----TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~-~~~lat~s~d~~i~iwd~~-----~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i  174 (473)
                      ..+++||++.|..++..+. .+.+.+++.|.++.+|++.     .+.+...+++|+..|..+..++||++.++++.|+++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l   87 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL   87 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence            4578899999999999988 4678899999999999875     356778899999999999999999999999999999


Q ss_pred             EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc--cccEEEEEecCCC
Q 011978          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDG  252 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~  252 (473)
                      ++||+.+|+. .+.+.+|...|.+++++|     +..++++|+.|+++++|+.. +.|.+++..+  ...|+|+.|+|+.
T Consensus        88 rlWDl~~g~~-t~~f~GH~~dVlsva~s~-----dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   88 RLWDLATGES-TRRFVGHTKDVLSVAFST-----DNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             EEEEecCCcE-EEEEEecCCceEEEEecC-----CCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCC
Confidence            9999999854 456899999999999887     56799999999999999976 4555555444  7889999999873


Q ss_pred             ---eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       253 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                         +|++++.|+++++||+++-+..                                                       
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~l~-------------------------------------------------------  185 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQLR-------------------------------------------------------  185 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcchh-------------------------------------------------------
Confidence               6889999999999998764332                                                       


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~  409 (473)
                                              ..+.+|...++.+++||||.++++|+.||.+.+||+..++.+..+. |...|.+++
T Consensus       186 ------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~  240 (315)
T KOG0279|consen  186 ------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLC  240 (315)
T ss_pred             ------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEE
Confidence                                    2234677889999999999999999999999999999999988875 788999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCceeeccc----cc-----CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP----GH-----ADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~h-----~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+|+...|+.+ .+..|+|||+.+++.+.++.    +.     ...-..++||+||..|.+|-.|+.|++|.
T Consensus       241 fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  241 FSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             ecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            99997766655 45669999999987765543    21     12235689999999999999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.3e-42  Score=299.52  Aligned_cols=320  Identities=28%  Similarity=0.494  Sum_probs=280.0

Q ss_pred             CCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCC--c----eeEE----E----cCCCCCEEEEEECCCCCeEEEEec
Q 011978          106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQ--T----PMFK----C----TGHKNWVLCIAWSADGKHLVSGSK  170 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~--~----~~~~----~----~~~~~~v~~l~~s~dg~~l~s~~~  170 (473)
                      +|..+|.+++|+|-.. .+|+++.|-+.|+|++...  .    ..++    .    ......|++|+|+.+|..||+|+.
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            4999999999999887 8899999999999998631  1    0000    0    012357999999999999999999


Q ss_pred             CCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC
Q 011978          171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (473)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  250 (473)
                      ||.+++|+.....  ...+..|+++|.++.|+.     .+.++++++.|+++.+||..++.....+.-|..+-..+.|-.
T Consensus       256 ~G~~riw~~~G~l--~~tl~~HkgPI~slKWnk-----~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~  328 (524)
T KOG0273|consen  256 DGEARIWNKDGNL--ISTLGQHKGPIFSLKWNK-----KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS  328 (524)
T ss_pred             CcEEEEEecCchh--hhhhhccCCceEEEEEcC-----CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec
Confidence            9999999975443  235788999999999986     567999999999999999999999998888888878889998


Q ss_pred             CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978          251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (473)
Q Consensus       251 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (473)
                      +..+++++.|+.|+++.+.....+.++.+|...|.++.+.|..                                    .
T Consensus       329 ~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg------------------------------------~  372 (524)
T KOG0273|consen  329 NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG------------------------------------S  372 (524)
T ss_pred             CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC------------------------------------c
Confidence            8899999999999999999999999999999999999987653                                    3


Q ss_pred             eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC---------cEEEEEECCCcEEEEeCCCCceEEEeeCC
Q 011978          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG---------QWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g---------~~lasgs~d~~v~lwd~~~~~~~~~~~~h  401 (473)
                      .|+++|+|++++||.... ......+.+|...|..+.|+|.|         ..+++++.|++|++||...|.++..|..|
T Consensus       373 LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH  451 (524)
T KOG0273|consen  373 LLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH  451 (524)
T ss_pred             eEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence            589999999999998543 33456688899999999999975         47999999999999999999999999999


Q ss_pred             ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                      ..+|.+|+|||+|+++|+|+.||.|.||++++++..+.+.+ .+.|+.|+|+.+|.+|..+-.|+.+.+
T Consensus       452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCV  519 (524)
T ss_pred             CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceE
Confidence            99999999999999999999999999999999999988876 456999999999999998888888766

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-41  Score=274.51  Aligned_cols=290  Identities=24%  Similarity=0.406  Sum_probs=250.0

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc-ccccCCCcCCcEEEE
Q 011978          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGI  199 (473)
Q Consensus       121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i  199 (473)
                      -+|+++|.|-+||+|...++.+...++..+..|..|..+||++.|++++. ..|++||+++++. ....+.+|++.|.++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            46899999999999999999999999888889999999999999988775 7899999998876 445678999999999


Q ss_pred             EeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeee
Q 011978          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK  278 (473)
Q Consensus       200 ~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~  278 (473)
                      .|..     +++.+++||+||++||||++...+...+ .|..+|+++..+|+. .|++|..+|.|++||+....+.+.+-
T Consensus        90 gF~~-----dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   90 GFQC-----DGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             EEee-----cCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence            8865     6789999999999999999986665544 467899999999876 69999999999999999887766653


Q ss_pred             -ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC-----CCC
Q 011978          279 -GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-----KQP  352 (473)
Q Consensus       279 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~  352 (473)
                       .....|.++.+.++.                                    ..++.+...|+.++|++...     ..|
T Consensus       164 Pe~~~~i~sl~v~~dg------------------------------------sml~a~nnkG~cyvW~l~~~~~~s~l~P  207 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDG------------------------------------SMLAAANNKGNCYVWRLLNHQTASELEP  207 (311)
T ss_pred             CCCCcceeeEEEcCCC------------------------------------cEEEEecCCccEEEEEccCCCccccceE
Confidence             345567777777653                                    24777788899999997542     245


Q ss_pred             eeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978          353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       353 ~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~  431 (473)
                      ..++..|...+....+|||+++||++|.|.+++||+.++. +....+++|..++++.+||.||+||++|+.|+.+++||+
T Consensus       208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL  287 (311)
T ss_pred             hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence            5678889999999999999999999999999999999887 666788999999999999999999999999999999999


Q ss_pred             CCCceeecccccCCCEEEEEEe
Q 011978          432 RTQKLKQDLPGHADEVFAVDWS  453 (473)
Q Consensus       432 ~~~~~~~~~~~h~~~i~~l~~s  453 (473)
                      ..++......||.....+++..
T Consensus       288 ~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  288 SAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ccCceeeecCCcccccEEEEee
Confidence            9999999999998877776653

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.8e-41  Score=311.06  Aligned_cols=340  Identities=26%  Similarity=0.443  Sum_probs=279.1

Q ss_pred             ecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978           96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (473)
Q Consensus        96 ~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~  173 (473)
                      ++-...++..||-+.|.++.|+.|.++|++||.|.++|+|+++..+.  ...+.+|.+.|...-|..|...+++.+.||.
T Consensus       133 ~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~  212 (893)
T KOG0291|consen  133 NPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA  212 (893)
T ss_pred             CcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce
Confidence            33445677889999999999999999999999999999999987665  4567899999999999999999999999999


Q ss_pred             EEEeeCCC-----------------------Ccc-c---------cccCCCcCCcEEEEEecee----------------
Q 011978          174 LQCWDPQT-----------------------GKP-S---------GNPLSGHKKWITGISWEPV----------------  204 (473)
Q Consensus       174 i~iwd~~~-----------------------~~~-~---------~~~~~~~~~~v~~i~~~~~----------------  204 (473)
                      +.+|....                       ++. .         ...+......+++.+|++.                
T Consensus       213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly  292 (893)
T KOG0291|consen  213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY  292 (893)
T ss_pred             EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence            99997651                       000 0         0001111133444444331                


Q ss_pred             ---------------------ccCCCCceEEEeeC-CCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC
Q 011978          205 ---------------------HLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC  261 (473)
Q Consensus       205 ---------------------~~~~~~~~~~s~s~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~  261 (473)
                                           .++..+..++.|+. -|.+-+|+..+...+....||...++|++++||| .+++|+.||
T Consensus       293 elP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg  372 (893)
T KOG0291|consen  293 ELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG  372 (893)
T ss_pred             ecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC
Confidence                                 12233455555443 3788888888888888888999999999999998 588999999


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      .|++||...|-++.++..|+..|..+.++..                                    ...+++.+.||++
T Consensus       373 KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~------------------------------------g~~llssSLDGtV  416 (893)
T KOG0291|consen  373 KVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR------------------------------------GNVLLSSSLDGTV  416 (893)
T ss_pred             cEEEEeccCceEEEEeccCCCceEEEEEEec------------------------------------CCEEEEeecCCeE
Confidence            9999999999999999999999999987643                                    3468999999999


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC-cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~-~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~  420 (473)
                      +.||+......++.....+....|++..|.|.++..|+.|. .|.+|+.++|+++.++.||.+||.+++|+|+|..||++
T Consensus       417 RAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~  496 (893)
T KOG0291|consen  417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASG  496 (893)
T ss_pred             EeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEec
Confidence            99998776665555555566789999999999999999886 69999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEECCCCc-eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          421 SKDSTLKVWDIRTQK-LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       421 s~Dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |.|.+|++||+-... ...++. +...+++++|+|||+.||+++.||.|.+|+
T Consensus       497 SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  497 SWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFD  548 (893)
T ss_pred             cccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence            999999999996542 334453 567799999999999999999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.3e-40  Score=291.89  Aligned_cols=371  Identities=23%  Similarity=0.385  Sum_probs=290.8

Q ss_pred             eecccccccccCCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978           95 RPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (473)
Q Consensus        95 ~~~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~  173 (473)
                      +..+....++.||+..|++++|-|... +++||++|++|.+|+-...+-...+..|..-|.|+.|+|||.++++++.||+
T Consensus       134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk  213 (603)
T KOG0318|consen  134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK  213 (603)
T ss_pred             ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence            445566678899999999999999876 5999999999999986544444556789999999999999999999999999


Q ss_pred             EEEeeCCCCcccccc--CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc----ccEEEEE
Q 011978          174 LQCWDPQTGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT----LAVTCVK  247 (473)
Q Consensus       174 i~iwd~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~  247 (473)
                      +.+||-.+|+.....  -.+|++.|.+++|+|     +..+|+|++.|.++||||+.+++++.++.-..    ..+-| -
T Consensus       214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsP-----Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~-l  287 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-----DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC-L  287 (603)
T ss_pred             EEEEcCCCccEEEEecCCCCccccEEEEEECC-----CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE-E
Confidence            999999999876532  248999999999998     66799999999999999999999888775322    23333 4


Q ss_pred             ecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccce-eeeccccCCCcccCCHHHHHHH-----HHhhh
Q 011978          248 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKA-----ALERY  321 (473)
Q Consensus       248 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  321 (473)
                      |. ++.|++-+.+|+|.+++.......+.+.+|...|.++.++++.. +..+.+|+....|.........     .....
T Consensus       288 Wq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI  366 (603)
T KOG0318|consen  288 WQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI  366 (603)
T ss_pred             Ee-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence            55 55789999999999999999999999999999999999998753 4555555544333221111100     01112


Q ss_pred             hcccCCCCceEEEecCCceEEEEeCCC-----------CCCCeee-------------------ecCc--------ccce
Q 011978          322 NKIKGNAPERLVSGSDDFTMFLWEPAV-----------SKQPKTR-------------------MTGH--------QQLV  363 (473)
Q Consensus       322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~-----------~~~~~~~-------------------~~~~--------~~~v  363 (473)
                      ..+.....+.+++++.|.++++.+...           ..+|...                   +..+        .-..
T Consensus       367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~  446 (603)
T KOG0318|consen  367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES  446 (603)
T ss_pred             EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence            223334447789999999999886421           1112110                   1111        1235


Q ss_pred             eEEEECCCCcEEEEEECCCcEEEEeCCCCce--EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee-cc
Q 011978          364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ-DL  440 (473)
Q Consensus       364 ~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~-~~  440 (473)
                      .++|++|++..+|.|+.|+.|++|.+..+..  ...+..|.++|++++||||+.|||++...+.+.+||+.+.+... .+
T Consensus       447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w  526 (603)
T KOG0318|consen  447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW  526 (603)
T ss_pred             ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee
Confidence            6799999999999999999999999886543  34567799999999999999999999999999999999877643 34


Q ss_pred             cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          441 PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       441 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .-|..+|++++|+|+.+++|+|+-|-.|.||.
T Consensus       527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             eeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence            44999999999999999999999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1e-40  Score=276.94  Aligned_cols=283  Identities=26%  Similarity=0.554  Sum_probs=242.6

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      .+.||.+.|+.+.|+|+|..+|+|+.|..|.+|++... +....+++|.+.|..+.|++|+..|++++.|.+++.||.++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            46799999999999999999999999999999996543 44567789999999999999999999999999999999999


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecC
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d  260 (473)
                      |+... ...+|...|+.+.  |...+  ...+.+++.||++++||++...+++++.. ...++++.|..++ .+++|+-|
T Consensus       122 G~~~r-k~k~h~~~vNs~~--p~rrg--~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  122 GKRIR-KHKGHTSFVNSLD--PSRRG--PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             ceeee-hhccccceeeecC--ccccC--CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeecccc
Confidence            98765 4678999888876  44332  24677899999999999998888776643 4578899998765 68899999


Q ss_pred             CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      +.|++||++.+.....                                                                
T Consensus       196 n~ikvWd~r~~d~~~~----------------------------------------------------------------  211 (338)
T KOG0265|consen  196 NDIKVWDLRKNDGLYT----------------------------------------------------------------  211 (338)
T ss_pred             CceeeeccccCcceEE----------------------------------------------------------------
Confidence            9999999876654433                                                                


Q ss_pred             EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC----CceEEEeeCCcc----CEEEEEEec
Q 011978          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----GKFVAVFRGHVG----PVYQISWSA  412 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~----~~~~~~~~~h~~----~v~~v~~sp  412 (473)
                                     +.||.+.|+.+..+|+|.++.+-+.|.++++||.+-    ..++.++.+|..    ....++|||
T Consensus       212 ---------------lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp  276 (338)
T KOG0265|consen  212 ---------------LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP  276 (338)
T ss_pred             ---------------eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence                           345667788889999999999999999999999863    356888887643    346789999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       413 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                      +++++..|+.|..+++||......+..++||...|+.++|+|....|.+++.|++|.+
T Consensus       277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            9999999999999999999998999999999999999999999999999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.8e-42  Score=296.45  Aligned_cols=280  Identities=29%  Similarity=0.587  Sum_probs=242.5

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~  187 (473)
                      ..+|+.+.|.|+|++|++|+..|.+.+|+..+-.-...+..|..+|.++.|+++|.++++|+.+|.|++|+..-... ..
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KI  174 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HH
Confidence            45799999999999999999999999999754332234568999999999999999999999999999999764332 22


Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEeecCCeEEEE
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVW  266 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~i~~w  266 (473)
                      ....|...|.+++|+|.     ...|++|+.||+|+|||....+....+.||.-.|.|+.|.|. +++++|+.|..|++|
T Consensus       175 ~~ahh~eaIRdlafSpn-----DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlW  249 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPN-----DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLW  249 (464)
T ss_pred             hhHhhhhhhheeccCCC-----CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEee
Confidence            23344488999999983     358999999999999999988888888999999999999985 589999999999999


Q ss_pred             ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  346 (473)
                      |.++|.++.++.                                                                    
T Consensus       250 DprSg~cl~tlh--------------------------------------------------------------------  261 (464)
T KOG0284|consen  250 DPRSGSCLATLH--------------------------------------------------------------------  261 (464)
T ss_pred             cCCCcchhhhhh--------------------------------------------------------------------
Confidence            999988765544                                                                    


Q ss_pred             CCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec-CCCEEEEEeCCCc
Q 011978          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDST  425 (473)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~  425 (473)
                                 +|...|..+.|+|++++|+++|.|..++++|+++.+.+..+++|...|+++.|+| ...+|.+|+.||.
T Consensus       262 -----------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs  330 (464)
T KOG0284|consen  262 -----------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS  330 (464)
T ss_pred             -----------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence                       3455678889999999999999999999999999999999999999999999999 5568999999999


Q ss_pred             EEEEECCCCceeec-ccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          426 LKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       426 i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |..|.+...+.+.. -.+|...|++++|+|=|..|++|+.|+++++|.
T Consensus       331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            99999985554443 357999999999999999999999999999995

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.1e-40  Score=281.10  Aligned_cols=289  Identities=30%  Similarity=0.509  Sum_probs=255.0

Q ss_pred             cccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978           97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (473)
Q Consensus        97 ~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i  176 (473)
                      +-++.+.+.||.+.|.|+++.|-.+++++|+.|++|+|||+.+++....+.+|-..|..+++|+-..++++++.|+.|+.
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEE
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIY  255 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~  255 (473)
                      ||++..+.+. .+.||-..|.+++..|.     -+.+++|+.|.++++||+++...+.++.||...|..+.+.+ |+.++
T Consensus       220 wDLe~nkvIR-~YhGHlS~V~~L~lhPT-----ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi  293 (460)
T KOG0285|consen  220 WDLEYNKVIR-HYHGHLSGVYCLDLHPT-----LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI  293 (460)
T ss_pred             EechhhhhHH-HhccccceeEEEecccc-----ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence            9999877654 47889999999988773     35899999999999999999999999999999999999876 66899


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +|+.|++|++||++.|+....+.                                                         
T Consensus       294 t~S~D~tvrlWDl~agkt~~tlt---------------------------------------------------------  316 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGKTMITLT---------------------------------------------------------  316 (460)
T ss_pred             EecCCceEEEeeeccCceeEeee---------------------------------------------------------
Confidence            99999999999998887554333                                                         


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR  415 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~  415 (473)
                                            .|...+++++.+|....+|+++.|. |+-|++..|..+..+.+|++.|++++.+.|| 
T Consensus       317 ----------------------~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-  372 (460)
T KOG0285|consen  317 ----------------------HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-  372 (460)
T ss_pred             ----------------------cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-
Confidence                                  3445678888999999999999884 9999999999999999999999999998886 


Q ss_pred             EEEEEeCCCcEEEEECCCCceeecc-----cc---cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          416 LLLSGSKDSTLKVWDIRTQKLKQDL-----PG---HADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       416 ~l~s~s~Dg~i~iwd~~~~~~~~~~-----~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++++|++.|.+..||.+++-..+..     +|   .+..|++.+|...|..|++|..|++|++|.
T Consensus       373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence            6778999999999999886543322     11   235799999999999999999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.2e-41  Score=313.40  Aligned_cols=275  Identities=32%  Similarity=0.579  Sum_probs=230.9

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      -++.--...++|..|++|+..||.|-.|..|++|.+...+ +..+++- ..         -..+=+.+.|-.+.+.|.+.
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~-~~---------l~~~d~~sad~~~~~~D~~~  440 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDA-SD---------LSNIDTESADVDVDMLDDDS  440 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccch-hh---------hccccccccchhhhhccccC
Confidence            3333345679999999999999999999999999987542 2222211 11         11222334444455666554


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecC
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD  260 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d  260 (473)
                      +... ..+.+|.++|.+..|+|     +.+.+++||.|+++|+|.+.+..++...+||..+|+++.|+|-|+ ++|++.|
T Consensus       441 ~~~~-~~L~GH~GPVyg~sFsP-----d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D  514 (707)
T KOG0263|consen  441 SGTS-RTLYGHSGPVYGCSFSP-----DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHD  514 (707)
T ss_pred             Ccee-EEeecCCCceeeeeecc-----cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCC
Confidence            4333 34789999999999988     457899999999999999999999999999999999999999995 8899999


Q ss_pred             CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      ++.++|.....+                                                                    
T Consensus       515 ~tArLWs~d~~~--------------------------------------------------------------------  526 (707)
T KOG0263|consen  515 QTARLWSTDHNK--------------------------------------------------------------------  526 (707)
T ss_pred             ceeeeeecccCC--------------------------------------------------------------------
Confidence            999999754322                                                                    


Q ss_pred             EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~  420 (473)
                                 +...+.+|-..|.|++|+|+..|+|+||.|.+||+||..+|..++.|.||.++|.+|+|||+|++||+|
T Consensus       527 -----------PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  527 -----------PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG  595 (707)
T ss_pred             -----------chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec
Confidence                       222345677789999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       421 s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +.||.|++||+.+++....+.+|.+.|+++.||.||..||+||.|++|++|+
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence            9999999999999999999999999999999999999999999999999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-39  Score=263.97  Aligned_cols=251  Identities=28%  Similarity=0.507  Sum_probs=214.2

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (473)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw  177 (473)
                      +.....+.||+..|..+..++||++.++++.|+++|+||+.++++...+.+|...|.+++|++|.++|++|+.|.+|++|
T Consensus        53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw  132 (315)
T KOG0279|consen   53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW  132 (315)
T ss_pred             CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEE
Q 011978          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT  256 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s  256 (473)
                      +....-.....-.+++.+|+++.|+|..   ....+++++.|++|++||+++.+....+.||+..++.++++||| +.++
T Consensus       133 nt~g~ck~t~~~~~~~~WVscvrfsP~~---~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas  209 (315)
T KOG0279|consen  133 NTLGVCKYTIHEDSHREWVSCVRFSPNE---SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS  209 (315)
T ss_pred             eecccEEEEEecCCCcCcEEEEEEcCCC---CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec
Confidence            9876544333333448999999999964   34589999999999999999999999999999999999999999 4678


Q ss_pred             eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      |+.||.+.+||+..++.+.++.                                                          
T Consensus       210 Ggkdg~~~LwdL~~~k~lysl~----------------------------------------------------------  231 (315)
T KOG0279|consen  210 GGKDGEAMLWDLNEGKNLYSLE----------------------------------------------------------  231 (315)
T ss_pred             CCCCceEEEEEccCCceeEecc----------------------------------------------------------
Confidence            9999999999999887654432                                                          


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC----C-----ccCEEE
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG----H-----VGPVYQ  407 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~----h-----~~~v~~  407 (473)
                                            |...|.+++|+|+.-.|+.+.. ..|+|||+.++.++..++.    .     .....+
T Consensus       232 ----------------------a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls  288 (315)
T KOG0279|consen  232 ----------------------AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS  288 (315)
T ss_pred             ----------------------CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence                                  3346888999998777776654 4699999999887765532    1     223578


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECC
Q 011978          408 ISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       408 v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      ++||+||+.|.+|-.|+.|++|.+.
T Consensus       289 laws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  289 LAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEcCCCcEEEeeecCCcEEEEEee
Confidence            9999999999999999999999875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.2e-38  Score=303.39  Aligned_cols=288  Identities=35%  Similarity=0.648  Sum_probs=251.0

Q ss_pred             cccCC-cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          103 TIAGH-TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       103 ~~~gh-~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      .+.+| ...|.++.|+|+|+.+++++.|+.+++|+..+..  ....+.+|...|.+++|+||++++++++.|+++++||+
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence            34444 7899999999999999999999999999997666  55666899999999999999999999999999999999


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~  258 (473)
                      .........+.+|...|++++|+|.     ++.+++|+.|++|++||++++++...+.+|...|++++|++++ .+++++
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~-----g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s  307 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPD-----GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS  307 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCC-----CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence            5443334467799999999999884     4689999999999999999999999999999999999999987 588889


Q ss_pred             cCCeEEEEECCCCce--eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          259 QDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      .|+.|++||+.++..  ...+..+                                                        
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~--------------------------------------------------------  331 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGA--------------------------------------------------------  331 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCC--------------------------------------------------------
Confidence            999999999988763  2221110                                                        


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccC---EEEEEEecC
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP---VYQISWSAD  413 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~---v~~v~~sp~  413 (473)
                                          .... .+++++|+|++.++++++.|+.+++||+..+.+...+.+|...   +.+...++.
T Consensus       332 --------------------~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  332 --------------------ENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             --------------------CCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence                                0112 4788999999999999999999999999999999999999874   445556789


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeccccc-CCCEEEEEEeeCCCEEEEEe--CCCcEEecc
Q 011978          414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-ADEVFAVDWSPDGEKVASGG--KDRVLKLWM  472 (473)
Q Consensus       414 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h-~~~i~~l~~s~d~~~l~s~~--~D~~i~~w~  472 (473)
                      +.++++|+.|+.|++||+.++.....+.+| ...+..+.|+|..+++++++  .|+.+++|.
T Consensus       391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            999999999999999999999889999999 88899999999999999999  799999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.5e-40  Score=280.99  Aligned_cols=268  Identities=30%  Similarity=0.561  Sum_probs=231.6

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~  186 (473)
                      ..+.|.|+.+  |...+++|..|++|+|||.++..++..+.||++.|.|+.|  |.+.|++|+.|.+|++||+++|+++.
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence            4578999988  5677999999999999999998888889999999999999  46799999999999999999999775


Q ss_pred             ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe---EEEEecCccccEEEEEecCCCeEEEeecCCeE
Q 011978          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTI  263 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i  263 (473)
                       .+-+|...|-.+.|+.       +++++++.|+++.+||+....   +...+.||.++|..+.|+.. ++++++.|.+|
T Consensus       272 -tlihHceaVLhlrf~n-------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTi  342 (499)
T KOG0281|consen  272 -TLIHHCEAVLHLRFSN-------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTI  342 (499)
T ss_pred             -HHhhhcceeEEEEEeC-------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecCCceE
Confidence             4668889999888754       589999999999999987653   33456799999999999854 89999999999


Q ss_pred             EEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEE
Q 011978          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (473)
Q Consensus       264 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  343 (473)
                      ++|+..++..++++.+|...|                                                           
T Consensus       343 kvW~~st~efvRtl~gHkRGI-----------------------------------------------------------  363 (499)
T KOG0281|consen  343 KVWSTSTCEFVRTLNGHKRGI-----------------------------------------------------------  363 (499)
T ss_pred             EEEeccceeeehhhhcccccc-----------------------------------------------------------
Confidence            999999998888777665433                                                           


Q ss_pred             EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC
Q 011978          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD  423 (473)
Q Consensus       344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D  423 (473)
                                          -|+.+  .|+++++||.|.+|++||...|.++..++||..-|.++.|  |.+.+++|+.|
T Consensus       364 --------------------AClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD  419 (499)
T KOG0281|consen  364 --------------------ACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD  419 (499)
T ss_pred             --------------------eehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeecccc
Confidence                                33332  5789999999999999999999999999999999999999  56789999999


Q ss_pred             CcEEEEECCCCc---------eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          424 STLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       424 g~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+|++||+..+.         .+.++..|.+.|+.+.|.  ...+++++.|.+|.||+
T Consensus       420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD  475 (499)
T ss_pred             ceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence            999999997643         234567799999999994  57899999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.5e-38  Score=255.92  Aligned_cols=266  Identities=26%  Similarity=0.426  Sum_probs=225.2

Q ss_pred             CeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe--EEEEecCcc
Q 011978          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHT  240 (473)
Q Consensus       163 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~--~~~~~~~h~  240 (473)
                      -+|+++++|.+|++|...+|.+... +......|+.+...|     +. .++.++....||+||+++++  .+.++.+|.
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rT-iqh~dsqVNrLeiTp-----dk-~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~   83 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRT-IQHPDSQVNRLEITP-----DK-KDLAAAGNQHVRLYDLNSNNPNPVATFEGHT   83 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEE-EecCccceeeEEEcC-----Cc-chhhhccCCeeEEEEccCCCCCceeEEeccC
Confidence            4789999999999999999988753 344456688877655     33 34445556899999998865  578899999


Q ss_pred             ccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978          241 LAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (473)
Q Consensus       241 ~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (473)
                      ..|+++.|..+|. +++|+.||++||||++...+.+.+ .+..+|+++.++|+                           
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpn---------------------------  135 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPN---------------------------  135 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCC---------------------------
Confidence            9999999999885 999999999999999985544444 45588999988875                           


Q ss_pred             hhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC------c
Q 011978          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG------K  393 (473)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~------~  393 (473)
                               ...|++|..+|.|++||+.........+......|.++++.|||.+++.+...|..++|++...      +
T Consensus       136 ---------QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~  206 (311)
T KOG0315|consen  136 ---------QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE  206 (311)
T ss_pred             ---------cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence                     2368999999999999987665445555556678999999999999999999999999998654      3


Q ss_pred             eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          394 FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       394 ~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++..|+.|.+-+..+.+|||+++||++|.|.+++||+.... +....+.+|+.-++.++||.||+||++|+.|++.++|.
T Consensus       207 P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  207 PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence            56678999999999999999999999999999999999886 56678899999999999999999999999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.3e-37  Score=281.12  Aligned_cols=286  Identities=43%  Similarity=0.746  Sum_probs=250.0

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      .++.+|.++|.+++|+|++++|++++.||.|++|++.++........|...+.++.|+|+++.|++++.+|.|++|++.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            45678999999999999999999999999999999998877777888999999999999999999999999999999987


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecC
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD  260 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d  260 (473)
                      ++... .+..|...+.++.|.|.     ...+++++.++.+.+||+.+++....+..|...+.++.|++++. +++++.|
T Consensus        83 ~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  156 (289)
T cd00200          83 GECVR-TLTGHTSYVSSVAFSPD-----GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD  156 (289)
T ss_pred             ccceE-EEeccCCcEEEEEEcCC-----CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence            65433 35678888999998873     34677777799999999999998888889999999999999765 5555569


Q ss_pred             CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      +.+++||+++++.+..+.                                                              
T Consensus       157 ~~i~i~d~~~~~~~~~~~--------------------------------------------------------------  174 (289)
T cd00200         157 GTIKLWDLRTGKCVATLT--------------------------------------------------------------  174 (289)
T ss_pred             CcEEEEEccccccceeEe--------------------------------------------------------------
Confidence            999999987554332221                                                              


Q ss_pred             EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~  420 (473)
                                       .|...+.+++|+|+++.+++++.|+.+++||..+++.+..+..|...+.+++|+|++.+++++
T Consensus       175 -----------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  237 (289)
T cd00200         175 -----------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG  237 (289)
T ss_pred             -----------------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence                             233467889999999999999999999999999999998888899999999999999999998


Q ss_pred             eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       421 s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +.||.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.+++|.
T Consensus       238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            8899999999998888888889999999999999999999999999999995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.2e-38  Score=276.29  Aligned_cols=288  Identities=28%  Similarity=0.522  Sum_probs=250.0

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~  187 (473)
                      ...|++++|+.+|..||+|+.||.+|||+.... .+..+..|.++|.++.|+.+|.+|++++.|+++.+||..+|... +
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~-q  312 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK-Q  312 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE-E
Confidence            367999999999999999999999999997654 45567789999999999999999999999999999999887654 3


Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEE
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW  266 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~w  266 (473)
                      .+.-|..+-..+.|..      ...|++++.|+.|+++.+.....+.++.||...|.++.|++.+ +|++++.|+++++|
T Consensus       313 ~f~~~s~~~lDVdW~~------~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW  386 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQS------NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW  386 (524)
T ss_pred             eeeeccCCccceEEec------CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee
Confidence            4555666655677754      3479999999999999999999999999999999999999987 58899999999999


Q ss_pred             ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  346 (473)
                      ....+.....+..|...|..+.++|........                           .....+++++.|.++++||.
T Consensus       387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~---------------------------~~~~~l~sas~dstV~lwdv  439 (524)
T KOG0273|consen  387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNP---------------------------NMNLMLASASFDSTVKLWDV  439 (524)
T ss_pred             ecCCCcchhhhhhhccceeeEeecCCCCccCCC---------------------------cCCceEEEeecCCeEEEEEc
Confidence            999999999999999999999998864332111                           12346899999999999998


Q ss_pred             CCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcE
Q 011978          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTL  426 (473)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i  426 (473)
                      ..+ .+...+..|+..|.+++|+|+|+|+|+|+.||.|.+|+.++++.++.+++ .+.|..|+|+.+|.+|..+-.|+.+
T Consensus       440 ~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~v  517 (524)
T KOG0273|consen  440 ESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSV  517 (524)
T ss_pred             cCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCc
Confidence            654 45566778999999999999999999999999999999999999999886 4569999999999999999999999


Q ss_pred             EEEECC
Q 011978          427 KVWDIR  432 (473)
Q Consensus       427 ~iwd~~  432 (473)
                      .+.|++
T Consensus       518 cvldlr  523 (524)
T KOG0273|consen  518 CVLDLR  523 (524)
T ss_pred             eEEEec
Confidence            999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-36  Score=281.52  Aligned_cols=322  Identities=22%  Similarity=0.443  Sum_probs=268.9

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC-CeEEEeeCCCCcccc
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCWDPQTGKPSG  186 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d-g~i~iwd~~~~~~~~  186 (473)
                      ...|++.+|++.-..||+|=..|...+|++.....++.+.-....|..++|+..|..|+.|+.. |++.+|++++...+.
T Consensus       265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl  344 (893)
T KOG0291|consen  265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL  344 (893)
T ss_pred             ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence            3789999999999999999999999999999988888888777889999999999999998765 899999998765432


Q ss_pred             ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEE
Q 011978          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV  265 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~  265 (473)
                       ..++|...+++++++|     ++.++++|+.||+|++||...+-|+.++..|+..|+.+.|...| .+++++-||+|+.
T Consensus       345 -KQQgH~~~i~~l~YSp-----Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  345 -KQQGHSDRITSLAYSP-----DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA  418 (893)
T ss_pred             -eccccccceeeEEECC-----CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence             3578999999999987     67899999999999999999999999999999999999999877 5889999999999


Q ss_pred             EECCCCceeeeeeccCc-eEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC-ceEEE
Q 011978          266 WETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-FTMFL  343 (473)
Q Consensus       266 wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~i  343 (473)
                      ||+...+..+++..... .-.++++.|.                                    .+.+..|+.| ..|++
T Consensus       419 wDlkRYrNfRTft~P~p~QfscvavD~s------------------------------------GelV~AG~~d~F~Ifv  462 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPEPIQFSCVAVDPS------------------------------------GELVCAGAQDSFEIFV  462 (893)
T ss_pred             eeecccceeeeecCCCceeeeEEEEcCC------------------------------------CCEEEeeccceEEEEE
Confidence            99999998888865433 2344544443                                    2344455544 47999


Q ss_pred             EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEecCCCEEEEEeC
Q 011978          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWSADSRLLLSGSK  422 (473)
Q Consensus       344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~g~~l~s~s~  422 (473)
                      |+...+ +....+.||.++|.+++|+|+|..||+||.|++||+||+-... .+.+++ +..-+..++|+|||+.||++.-
T Consensus       463 WS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTl  540 (893)
T KOG0291|consen  463 WSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATL  540 (893)
T ss_pred             EEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEe
Confidence            998654 4566789999999999999999999999999999999986542 333443 5667999999999999999999


Q ss_pred             CCcEEEEECCCCceeecccc--------------------cCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978          423 DSTLKVWDIRTQKLKQDLPG--------------------HADEVFAVDWSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       423 Dg~i~iwd~~~~~~~~~~~~--------------------h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      ||.|.+||+........+.|                    .....+.+++|+||+.+++||..+.|.++..
T Consensus       541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV  611 (893)
T ss_pred             cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence            99999999876544332221                    1245788999999999999999999998863

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.6e-37  Score=251.66  Aligned_cols=283  Identities=28%  Similarity=0.511  Sum_probs=232.1

Q ss_pred             ccccCCcccEEEEEECCC-CCeEEEEeCCCeEEEEeCCCCc---eeEEE-cCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978          102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT---PMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~-~~~lat~s~d~~i~iwd~~~~~---~~~~~-~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i  176 (473)
                      ..+.||++.|..++|+|- |..||+|+.|+.||||+...+.   +...+ .+|+..|.+++|+|.|++|++++.|.++.|
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI   87 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence            456899999999999998 8899999999999999987422   22222 379999999999999999999999999999


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEE
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY  255 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~  255 (473)
                      |.-..+                                              ..+++..+.||...|.|++|+.+| +|+
T Consensus        88 w~k~~~----------------------------------------------efecv~~lEGHEnEVK~Vaws~sG~~LA  121 (312)
T KOG0645|consen   88 WKKEDG----------------------------------------------EFECVATLEGHENEVKCVAWSASGNYLA  121 (312)
T ss_pred             eecCCC----------------------------------------------ceeEEeeeeccccceeEEEEcCCCCEEE
Confidence            953322                                              235566788999999999999887 688


Q ss_pred             EeecCCeEEEEECCCC---ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          256 TGSQDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                      +++.|+.+-+|.+..+   .++..++.|.+.|..+.++|.                                    .+.|
T Consensus       122 TCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt------------------------------------~dlL  165 (312)
T KOG0645|consen  122 TCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT------------------------------------EDLL  165 (312)
T ss_pred             EeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC------------------------------------ccee
Confidence            9999999999998754   456678899999999988874                                    3469


Q ss_pred             EEecCCceEEEEeCCCC--CCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978          333 VSGSDDFTMFLWEPAVS--KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW  410 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~  410 (473)
                      ++++.|++|++|+....  -.....+.+|...|.+++|+|.|..|++++.|++++||-..+.    .-.-|..+++.++|
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~W  241 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVPW  241 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeeee
Confidence            99999999999985522  1345678899999999999999999999999999999975522    11237889999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCC------ce-eecccccCCCEEEEEEeeC-CCEEEEEeCCCcEEecc
Q 011978          411 SADSRLLLSGSKDSTLKVWDIRTQ------KL-KQDLPGHADEVFAVDWSPD-GEKVASGGKDRVLKLWM  472 (473)
Q Consensus       411 sp~g~~l~s~s~Dg~i~iwd~~~~------~~-~~~~~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~~w~  472 (473)
                      .  ...||+++.|+.|++|.....      +. ...-..|...|+++.|.|. .+.|++++.||.+++|.
T Consensus       242 ~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  242 D--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             c--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            8  458999999999999976532      11 1233468889999999995 67999999999999995

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-38  Score=272.04  Aligned_cols=287  Identities=26%  Similarity=0.397  Sum_probs=238.2

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce---eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i  176 (473)
                      ....+..|++.|+-+.||++|++||+|+.|.+.-+|++.....   .+.+.+|..+|.-+.||||.++|++|+.|..+.+
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            3456788999999999999999999999999999999754433   5677899999999999999999999999999999


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc-cccEEEEEecCCC-eE
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG-VI  254 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~-~l  254 (473)
                      ||..+|........+|...+.+.+|.|     ++.+|++|+.|+++..||+.... .....+- ...|.+++..+|| .+
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~p-----Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~v  369 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCP-----DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYV  369 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEcc-----CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEE
Confidence            999999877666666778899999998     55689999999999999987443 2223332 2458889998888 47


Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      ++.+.|..|++++.++.....                                                           
T Consensus       370 l~v~~d~~i~l~~~e~~~dr~-----------------------------------------------------------  390 (519)
T KOG0293|consen  370 LLVTVDKKIRLYNREARVDRG-----------------------------------------------------------  390 (519)
T ss_pred             EEEecccceeeechhhhhhhc-----------------------------------------------------------
Confidence            788899999998865421110                                                           


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccC--EEEEEEec
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP--VYQISWSA  412 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~--v~~v~~sp  412 (473)
                                           +..-...|+++++|.|++++.+-=.+..+++||++..+.+..+.||...  +..-+|--
T Consensus       391 ---------------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg  449 (519)
T KOG0293|consen  391 ---------------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG  449 (519)
T ss_pred             ---------------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence                                 0011245888999999999999999999999999988888899998643  44455543


Q ss_pred             -CCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC-EEEEEeCCCcEEecc
Q 011978          413 -DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGGKDRVLKLWM  472 (473)
Q Consensus       413 -~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~~w~  472 (473)
                       +..++++||.|+.|+||+..+++++..+.||...|++++|+|... ++||||.||+||||.
T Consensus       450 ~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  450 GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence             557999999999999999999999999999999999999999764 779999999999995

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=8.2e-39  Score=281.81  Aligned_cols=294  Identities=29%  Similarity=0.511  Sum_probs=245.7

Q ss_pred             EeecccccccccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCEEEEEECCCCCeEEEEecC
Q 011978           94 IRPVNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA  171 (473)
Q Consensus        94 ~~~~~~~~~~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d  171 (473)
                      +.-+.+.+..+.||+..|.++.|.| .+.+|++++.|+.|+||++.. +.++..+.+|..+|.++.|+++|..+++++.|
T Consensus       200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD  279 (503)
T KOG0282|consen  200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD  279 (503)
T ss_pred             eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence            3345667788999999999999999 889999999999999999876 77888899999999999999999999999999


Q ss_pred             CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC
Q 011978          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD  251 (473)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  251 (473)
                      +.|++||.++|++...                                                +. ....++|+.|.|+
T Consensus       280 ~~lKlwDtETG~~~~~------------------------------------------------f~-~~~~~~cvkf~pd  310 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSR------------------------------------------------FH-LDKVPTCVKFHPD  310 (503)
T ss_pred             eeeeeeccccceEEEE------------------------------------------------Ee-cCCCceeeecCCC
Confidence            9999998888864321                                                10 0123567778776


Q ss_pred             C--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          252 G--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       252 ~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      +  .+++|+.|+.|+.||.++++.+++...|-..|+.+.+-++                                    .
T Consensus       311 ~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~------------------------------------g  354 (503)
T KOG0282|consen  311 NQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE------------------------------------G  354 (503)
T ss_pred             CCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC------------------------------------C
Confidence            5  6889999999999999999999988888888888877654                                    3


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC---ceEEEeeCCc--cC
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---KFVAVFRGHV--GP  404 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~---~~~~~~~~h~--~~  404 (473)
                      .+++++++|+++++|+.............+.-...++..+|++++++.-+.|+.|.++.....   ..-..|+||.  |.
T Consensus       355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy  434 (503)
T KOG0282|consen  355 RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY  434 (503)
T ss_pred             ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence            468999999999999976654444333334445678999999999999999999999986532   2234678885  45


Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCC-CEEEEEeCCCcEEecc
Q 011978          405 VYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG-EKVASGGKDRVLKLWM  472 (473)
Q Consensus       405 v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~~w~  472 (473)
                      -..|.|||||.+|++|+.||.+.+||.++-++...++.|...+..+.|+|.. ..+|++|.||.|++|.
T Consensus       435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            6779999999999999999999999999999999999999999999999975 4789999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.9e-37  Score=253.25  Aligned_cols=246  Identities=27%  Similarity=0.459  Sum_probs=217.8

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC------ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~------~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~  175 (473)
                      +.++-.+..|..++|+|.|+++|.|+-|+...||++.+.      +....+.+|.+.++|+.|.+| .+|++++.|.+..
T Consensus        91 haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCa  169 (343)
T KOG0286|consen   91 HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCA  169 (343)
T ss_pred             eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEE
Confidence            334556788999999999999999999999999999865      234457899999999999875 5899999999999


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-E
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I  254 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l  254 (473)
                      +||+++|+.. ..+.+|.+.|.++++.|.    +++.|++|+-|+..++||++.+.+.+.|.||...|.++.|.|+|. +
T Consensus       170 lWDie~g~~~-~~f~GH~gDV~slsl~p~----~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~af  244 (343)
T KOG0286|consen  170 LWDIETGQQT-QVFHGHTGDVMSLSLSPS----DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAF  244 (343)
T ss_pred             EEEcccceEE-EEecCCcccEEEEecCCC----CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCee
Confidence            9999999865 457899999999998885    457899999999999999999999999999999999999999995 8


Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      ++|+.|+++|+||++..+.+..+...                                                      
T Consensus       245 atGSDD~tcRlyDlRaD~~~a~ys~~------------------------------------------------------  270 (343)
T KOG0286|consen  245 ATGSDDATCRLYDLRADQELAVYSHD------------------------------------------------------  270 (343)
T ss_pred             eecCCCceeEEEeecCCcEEeeeccC------------------------------------------------------
Confidence            99999999999999987655433210                                                      


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS  414 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g  414 (473)
                                             .-...|++++||..|++|.+|..|.++.+||.-.++.+..+.+|.+.|+++..+|||
T Consensus       271 -----------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG  327 (343)
T KOG0286|consen  271 -----------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG  327 (343)
T ss_pred             -----------------------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC
Confidence                                   001358899999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEE
Q 011978          415 RLLLSGSKDSTLKVWD  430 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd  430 (473)
                      .-+++||.|.+++||.
T Consensus       328 ~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  328 MAVATGSWDSTLRIWA  343 (343)
T ss_pred             cEEEecchhHheeecC
Confidence            9999999999999994

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.1e-36  Score=277.17  Aligned_cols=373  Identities=25%  Similarity=0.401  Sum_probs=288.8

Q ss_pred             eEEEeecc--cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE
Q 011978           91 VFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG  168 (473)
Q Consensus        91 ~~~~~~~~--~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~  168 (473)
                      .++++...  ....++.||...|+++.|+..|.+||+||.|+.|.+||+-...-++.+.+|.+.|+.+-|..+.+.|++.
T Consensus        88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~  167 (888)
T KOG0306|consen   88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSV  167 (888)
T ss_pred             eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEe
Confidence            44555443  4456778999999999999999999999999999999999888899999999999999999888999999


Q ss_pred             ecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-------------------
Q 011978          169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-------------------  229 (473)
Q Consensus       169 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-------------------  229 (473)
                      +.|+.|++||+.+..+.. ..-.|...+.++.+.+       ..+++++.|+.+++|++..                   
T Consensus       168 sKDs~iK~WdL~tqhCf~-Thvd~r~Eiw~l~~~~-------~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~  239 (888)
T KOG0306|consen  168 SKDSMIKFWDLETQHCFE-THVDHRGEIWALVLDE-------KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF  239 (888)
T ss_pred             ccCceEEEEecccceeee-EEecccceEEEEEEec-------ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence            999999999999876654 3456788888887655       4688888888888887610                   


Q ss_pred             ----------------CeEE------------------------------------------------------------
Q 011978          230 ----------------RKCV------------------------------------------------------------  233 (473)
Q Consensus       230 ----------------~~~~------------------------------------------------------------  233 (473)
                                      .+.+                                                            
T Consensus       240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~  319 (888)
T KOG0306|consen  240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT  319 (888)
T ss_pred             eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence                            0000                                                            


Q ss_pred             -----------------------------------------------EEecCccccEEEEEecCCCeEEEeecCCeEEEE
Q 011978          234 -----------------------------------------------ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW  266 (473)
Q Consensus       234 -----------------------------------------------~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w  266 (473)
                                                                     ..+.||...|.+++++.+..++..+..+.+++|
T Consensus       320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiW  399 (888)
T KOG0306|consen  320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIW  399 (888)
T ss_pred             hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEE
Confidence                                                           112367788899999998887777788999999


Q ss_pred             ECCCCceeeeeeccCceEEEEEecccc-eeeeccccCCCcccCCHHHHHH----HHHhhhhcc-cCCCCceEEEecCCce
Q 011978          267 ETTQGKLIRELKGHGHWVNSLALSTEY-ALRTGAFDHTGKQYSSPEEMKK----AALERYNKI-KGNAPERLVSGSDDFT  340 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~l~~~~~d~~  340 (473)
                      +..+.++++++...  .+.+..+-|.. .+..+...+.-..|........    +.-.....+ ..+....+++++.|.+
T Consensus       400 n~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt  477 (888)
T KOG0306|consen  400 NRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT  477 (888)
T ss_pred             EccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE
Confidence            99999999988654  44444444432 2233332222222221111110    111111111 1233457999999999


Q ss_pred             EEEEeCCCC-----CCC------eeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978          341 MFLWEPAVS-----KQP------KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       341 i~iwd~~~~-----~~~------~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~  409 (473)
                      +++||....     .+.      ..+...-.+.|.|+.+||||++||.+=.|.+|++|-+.+.+..-.+.||.-||.|+.
T Consensus       478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD  557 (888)
T KOG0306|consen  478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD  557 (888)
T ss_pred             EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe
Confidence            999985311     111      112223456799999999999999999999999999999999999999999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978          410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      .|||+++++|||.|.+|+||-+.=|.+-+.+.+|.+.|+++.|-|+...+.++|.|+.++-|+|
T Consensus       558 IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg  621 (888)
T KOG0306|consen  558 ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG  621 (888)
T ss_pred             ccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeech
Confidence            9999999999999999999999999998999999999999999999999999999999999975

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.8e-35  Score=304.39  Aligned_cols=303  Identities=18%  Similarity=0.323  Sum_probs=244.7

Q ss_pred             CCeEEEEeCCCCceeEE-----EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC----ccccc--cCCCcCCcEE
Q 011978          129 DTTVRLWDLNTQTPMFK-----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG----KPSGN--PLSGHKKWIT  197 (473)
Q Consensus       129 d~~i~iwd~~~~~~~~~-----~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~----~~~~~--~~~~~~~~v~  197 (473)
                      +|.+++|+.........     +..|...|.+++|+|+|++|++|+.|+.|++|+....    .....  ....+...+.
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  536 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS  536 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence            67788888765433222     3458899999999999999999999999999997542    11000  0112345678


Q ss_pred             EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CC-eEEEeecCCeEEEEECCCCceee
Q 011978          198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG-VIYTGSQDCTIKVWETTQGKLIR  275 (473)
Q Consensus       198 ~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~~~d~~i~~wd~~~~~~~~  275 (473)
                      ++.|.|.    ...++++++.||+|++||+.+++.+..+.+|...|++++|++ ++ .|++|+.|++|++||++++..+.
T Consensus       537 ~l~~~~~----~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        537 GICWNSY----IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             eEEeccC----CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence            8888763    245899999999999999999999999999999999999985 44 68999999999999999988887


Q ss_pred             eeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee
Q 011978          276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR  355 (473)
Q Consensus       276 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  355 (473)
                      .+..+ ..+.++.+.+.                                   ....+++|+.|+.|++||+.....+...
T Consensus       613 ~~~~~-~~v~~v~~~~~-----------------------------------~g~~latgs~dg~I~iwD~~~~~~~~~~  656 (793)
T PLN00181        613 TIKTK-ANICCVQFPSE-----------------------------------SGRSLAFGSADHKVYYYDLRNPKLPLCT  656 (793)
T ss_pred             EEecC-CCeEEEEEeCC-----------------------------------CCCEEEEEeCCCeEEEEECCCCCccceE
Confidence            77654 35666655321                                   1346899999999999998766555667


Q ss_pred             ecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC------CceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011978          356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT------GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVW  429 (473)
Q Consensus       356 ~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~------~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iw  429 (473)
                      +.+|...|.+++|. ++.+|++++.|++|++||+..      .+++..+.+|...+..++|+|++.+||+|+.|+.|++|
T Consensus       657 ~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw  735 (793)
T PLN00181        657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY  735 (793)
T ss_pred             ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEE
Confidence            78999999999997 788999999999999999874      35678899999999999999999999999999999999


Q ss_pred             ECCCCceee-------------cccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          430 DIRTQKLKQ-------------DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       430 d~~~~~~~~-------------~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +........             ....|...|.+++|+|+++.|++|+.||.|+||.
T Consensus       736 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        736 HKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             ECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            976543221             1233456799999999999999999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-36  Score=242.94  Aligned_cols=283  Identities=24%  Similarity=0.390  Sum_probs=242.3

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ...+.+|.++|.++.|+-||++.++++.|.+||+|+...+..+....+|...|..++.+.|...+++|+.|..+.+||..
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC--eEEEEecCccccEEEEEecCCCeEEEee
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGDGVIYTGS  258 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~l~s~~  258 (473)
                      +|+... .+.+|.+.|+.+.|+.     ....+++|+.|.++++||.++.  +.++.+......|.++..+ +..|++|+
T Consensus        90 TGkv~R-r~rgH~aqVNtV~fNe-----esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~heIvaGS  162 (307)
T KOG0316|consen   90 TGKVDR-RFRGHLAQVNTVRFNE-----ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHEIVAGS  162 (307)
T ss_pred             cCeeee-ecccccceeeEEEecC-----cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccEEEeec
Confidence            998765 5789999999998764     5568999999999999998764  5666676667788888776 34688999


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .||++|.||++.|+.....                                                             
T Consensus       163 ~DGtvRtydiR~G~l~sDy-------------------------------------------------------------  181 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSDY-------------------------------------------------------------  181 (307)
T ss_pred             cCCcEEEEEeecceeehhh-------------------------------------------------------------
Confidence            9999999999887643210                                                             


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE--EEEecCCCE
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ--ISWSADSRL  416 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~--v~~sp~g~~  416 (473)
                                          -..+|+++.|++|++....++.|+++++.|-.+|+++..++||.+.-..  .+++....+
T Consensus       182 --------------------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth  241 (307)
T KOG0316|consen  182 --------------------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH  241 (307)
T ss_pred             --------------------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence                                0135899999999999999999999999999999999999999876544  456667789


Q ss_pred             EEEEeCCCcEEEEECCCCceeecccccCCC-EEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          417 LLSGSKDSTLKVWDIRTQKLKQDLPGHADE-VFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       417 l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +++||.||.|++||+.....+..++.|... |..++++|....|+++..-+ +.+|.
T Consensus       242 V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~  297 (307)
T KOG0316|consen  242 VFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY  297 (307)
T ss_pred             EEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence            999999999999999988888888777766 78999999988887776543 44553

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.5e-36  Score=283.18  Aligned_cols=234  Identities=31%  Similarity=0.562  Sum_probs=197.7

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ..++.||+++|..++|+|+.++|+++|+|++||+|.+.+...+...++|..+|+++.|+|-|-++||++.|++-++|...
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD  523 (707)
T ss_pred             eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence            34588999999999999999999999999999999999999999999999999999999998888887777777777654


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeec
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~  259 (473)
                      .                                                .+.+..+.||...|.|+.|+|+. ++++|+.
T Consensus       524 ~------------------------------------------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs  555 (707)
T KOG0263|consen  524 H------------------------------------------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSS  555 (707)
T ss_pred             c------------------------------------------------CCchhhhcccccccceEEECCcccccccCCC
Confidence            3                                                22233456788899999999986 7999999


Q ss_pred             CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  339 (473)
                      |.++|+||+.+|..++.+                                                              
T Consensus       556 D~tVRlWDv~~G~~VRiF--------------------------------------------------------------  573 (707)
T KOG0263|consen  556 DRTVRLWDVSTGNSVRIF--------------------------------------------------------------  573 (707)
T ss_pred             CceEEEEEcCCCcEEEEe--------------------------------------------------------------
Confidence            999999999887655433                                                              


Q ss_pred             eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEE
Q 011978          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS  419 (473)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s  419 (473)
                                       .||...|.+++|||+|++||+|+.||.|.+||+.+++.+..+.+|.+.|.++.||.||..||+
T Consensus       574 -----------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLas  636 (707)
T KOG0263|consen  574 -----------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLAS  636 (707)
T ss_pred             -----------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEe
Confidence                             356778999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEECCCCc------------------------eeecccccCCCEEEEEEeeCCCEEEE
Q 011978          420 GSKDSTLKVWDIRTQK------------------------LKQDLPGHADEVFAVDWSPDGEKVAS  461 (473)
Q Consensus       420 ~s~Dg~i~iwd~~~~~------------------------~~~~~~~h~~~i~~l~~s~d~~~l~s  461 (473)
                      |+.|++|++||+..-.                        .+..+.....+|..|.|.-.+-.|+.
T Consensus       637 gg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~  702 (707)
T KOG0263|consen  637 GGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAV  702 (707)
T ss_pred             cCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEe
Confidence            9999999999985421                        12233344557888888876544443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.5e-36  Score=270.64  Aligned_cols=283  Identities=23%  Similarity=0.387  Sum_probs=250.1

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~  182 (473)
                      .+..|++.|.++.|||...+++++-..|.|.|||.+++..+..+...+-+|.+..|-+-.+.+++|+.|..|++|+.+++
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence            44558999999999999999999999999999999999888888777889999999988889999999999999999999


Q ss_pred             ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCC--eEEEeec
Q 011978          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG--VIYTGSQ  259 (473)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~  259 (473)
                      +... .+.+|.+.|.++..+|..     ..++|+|.|-+|++||.+.. .|.+++.||...|.+++|+|..  .+++++-
T Consensus        88 ekV~-~FeAH~DyIR~iavHPt~-----P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   88 EKVK-TFEAHSDYIRSIAVHPTL-----PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             eeeE-EeeccccceeeeeecCCC-----CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            8765 578999999999988854     48999999999999999765 6888999999999999999854  7999999


Q ss_pred             CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  339 (473)
                      |++|++|.+.+....                                                                 
T Consensus       162 DrTVKVWslgs~~~n-----------------------------------------------------------------  176 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPN-----------------------------------------------------------------  176 (794)
T ss_pred             cccEEEEEcCCCCCc-----------------------------------------------------------------
Confidence            999999987654333                                                                 


Q ss_pred             eEEEEeCCCCCCCeeeecCcccceeEEEECC--CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL  417 (473)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l  417 (473)
                                    ..+.+|...|+|++|-+  |-.||++|++|.++++||.++..|+++++||...|+.+.|+|.=..+
T Consensus       177 --------------fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii  242 (794)
T KOG0276|consen  177 --------------FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII  242 (794)
T ss_pred             --------------eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence                          33446667777887776  44699999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                      ++||.||+++||+..+.+...++.-.-.+|++++-.+.++.++.|...|.+.+
T Consensus       243 isgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  243 ISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             EEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            99999999999999998888887766788999998888888888888887755

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-36  Score=280.53  Aligned_cols=309  Identities=24%  Similarity=0.422  Sum_probs=253.5

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      ++.-+..|..++|+|...++.++-..|.|++||..-+..+..+..|.++|..++|+|++..+++|+.|-+|++|+..+.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            34456678899999999999999999999999999888888899999999999999999999999999999999999887


Q ss_pred             cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeecCCe
Q 011978          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCT  262 (473)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d~~  262 (473)
                      ++. .+.||-+.|..+.|++..     .+++++|.|.+|+||+..+++|+..+.||+..|.|.+|.| +..+++++-|.+
T Consensus        85 clf-tL~GHlDYVRt~~FHhey-----PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT  158 (1202)
T KOG0292|consen   85 CLF-TLLGHLDYVRTVFFHHEY-----PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT  158 (1202)
T ss_pred             ehh-hhccccceeEEeeccCCC-----ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence            764 578999999999988743     4899999999999999999999999999999999999999 568999999999


Q ss_pred             EEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (473)
Q Consensus       263 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  342 (473)
                      ||+||+..-+.- ...            |.      +++         +.+           .+.....=+-|+.|-   
T Consensus       159 VRVWDisGLRkk-~~~------------pg------~~e---------~~~-----------~~~~~~~dLfg~~Da---  196 (1202)
T KOG0292|consen  159 VRVWDISGLRKK-NKA------------PG------SLE---------DQM-----------RGQQGNSDLFGQTDA---  196 (1202)
T ss_pred             EEEEeecchhcc-CCC------------CC------Cch---------hhh-----------hccccchhhcCCcCe---
Confidence            999997532211 000            00      000         000           000000001111221   


Q ss_pred             EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc--eEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~sp~g~~l~s~  420 (473)
                              ..+..+.||...|+-++|+|.-.+|++|++|+.|++|.....+  .+.+.+||.+.|+++-|+|...+++|.
T Consensus       197 --------VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn  268 (1202)
T KOG0292|consen  197 --------VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN  268 (1202)
T ss_pred             --------eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEec
Confidence                    2345678999999999999999999999999999999887544  356789999999999999999999999


Q ss_pred             eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978          421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL  468 (473)
Q Consensus       421 s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i  468 (473)
                      |.|++|+|||+...+..++++-..++-+.++-+|..+.+|.|...|.+
T Consensus       269 sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~  316 (1202)
T KOG0292|consen  269 SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMI  316 (1202)
T ss_pred             CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceE
Confidence            999999999999888888887777889999999999987777665544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.9e-34  Score=293.75  Aligned_cols=284  Identities=19%  Similarity=0.378  Sum_probs=233.7

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEECC-CCCeEEEEecCCeE
Q 011978          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--------TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGEL  174 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~--------~~~~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i  174 (473)
                      +.+|...|.+++|+|+|++||+|+.|+.|+|||....        .+...+. +...+.+++|++ ++.+|++++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4569999999999999999999999999999997532        1222233 345799999987 47899999999999


Q ss_pred             EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CC-
Q 011978          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG-  252 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~-  252 (473)
                      ++||+.+++... .+.+|...|.++.|+|.    ++..|++|+.|++|++||++++.++..+..+ ..+.++.|.+ ++ 
T Consensus       558 ~lWd~~~~~~~~-~~~~H~~~V~~l~~~p~----~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~  631 (793)
T PLN00181        558 QVWDVARSQLVT-EMKEHEKRVWSIDYSSA----DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGR  631 (793)
T ss_pred             EEEECCCCeEEE-EecCCCCCEEEEEEcCC----CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCC
Confidence            999998876543 46789999999999863    3458999999999999999999888887755 5789999954 45 


Q ss_pred             eEEEeecCCeEEEEECCCCc-eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978          253 VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (473)
                      .+++|+.|+.|++||+++++ .+..+.+|...|..+.+.+                                     ...
T Consensus       632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-------------------------------------~~~  674 (793)
T PLN00181        632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-------------------------------------SST  674 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-------------------------------------CCE
Confidence            68899999999999998765 4567778888888887642                                     235


Q ss_pred             EEEecCCceEEEEeCCCC-----CCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe--------
Q 011978          332 LVSGSDDFTMFLWEPAVS-----KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF--------  398 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~--------  398 (473)
                      +++++.|+++++||+...     ..+...+.+|...+.+++|+|++++||+|+.|+.|++|+......+..+        
T Consensus       675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~  754 (793)
T PLN00181        675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV  754 (793)
T ss_pred             EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence            889999999999998642     2345567889999999999999999999999999999998765433222        


Q ss_pred             -----eCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978          399 -----RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       399 -----~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~  431 (473)
                           ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus       755 ~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        755 SGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence                 234567999999999999999999999999986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.3e-36  Score=254.23  Aligned_cols=265  Identities=27%  Similarity=0.534  Sum_probs=223.6

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (473)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i  176 (473)
                      ..+.+.++||++.|.+++|+..|++||+++.|-.+++||..+ .+++....+|+..|.+++|-|.|.+|++++.|.+|+.
T Consensus       140 g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~  219 (406)
T KOG0295|consen  140 GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKA  219 (406)
T ss_pred             hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeE
Confidence            346788999999999999999999999999999999999976 4556667799999999999999999999999999999


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEE
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT  256 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s  256 (473)
                      |+..+|-+.. .+.+|..+|.-+..     +.++..+++|+.|.++++|=+.++.|...+.+|..+|.|++|.+... ++
T Consensus       220 We~~tg~cv~-t~~~h~ewvr~v~v-----~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~-~~  292 (406)
T KOG0295|consen  220 WECDTGYCVK-TFPGHSEWVRMVRV-----NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS-YP  292 (406)
T ss_pred             EecccceeEE-eccCchHhEEEEEe-----cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc-Cc
Confidence            9999998765 57899998887764     44788999999999999999999999999999999999999976532 11


Q ss_pred             eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      ...+.        ++.                                                     ......+.+++
T Consensus       293 ~i~~a--------t~~-----------------------------------------------------~~~~~~l~s~S  311 (406)
T KOG0295|consen  293 SISEA--------TGS-----------------------------------------------------TNGGQVLGSGS  311 (406)
T ss_pred             chhhc--------cCC-----------------------------------------------------CCCccEEEeec
Confidence            10000        000                                                     00012466777


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCE
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRL  416 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~  416 (473)
                      .|++|++||+..+ .....+.+|..+|..++|+|.|+||+++.+|+++++||++++++...+..|...|+++.|+.+-.+
T Consensus       312 rDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~  390 (406)
T KOG0295|consen  312 RDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPY  390 (406)
T ss_pred             ccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCce
Confidence            7777777776654 344567788999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEEC
Q 011978          417 LLSGSKDSTLKVWDI  431 (473)
Q Consensus       417 l~s~s~Dg~i~iwd~  431 (473)
                      +++|+-|.++++|..
T Consensus       391 VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  391 VVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEeccccceeeeeec
Confidence            999999999999964

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-33  Score=256.12  Aligned_cols=323  Identities=20%  Similarity=0.330  Sum_probs=256.1

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      +..+.-..-+|.+..|-+..+++++|+.|..||||+.++...+..+..|.+.|.|++.+|.-.++++++.|-+|++||++
T Consensus        48 VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we  127 (794)
T KOG0276|consen   48 VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE  127 (794)
T ss_pred             eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc
Confidence            34444456688899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC---eEEEe
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTG  257 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~  257 (473)
                      .+-...+.+.||...|..++|+|.    +.+.|++++-|++|++|.+....+..++.||...|.|+.+-+.|   +|++|
T Consensus       128 ~~wa~~qtfeGH~HyVMqv~fnPk----D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg  203 (794)
T KOG0276|consen  128 NEWACEQTFEGHEHYVMQVAFNPK----DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG  203 (794)
T ss_pred             CceeeeeEEcCcceEEEEEEecCC----CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec
Confidence            876667789999999999999995    44689999999999999999999999999999999999997665   89999


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      +.|.++++||.++..+++++.+|.+.|..+.++|..+                                    .+++|+.
T Consensus       204 aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp------------------------------------iiisgsE  247 (794)
T KOG0276|consen  204 ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP------------------------------------IIISGSE  247 (794)
T ss_pred             CCCceEEEeecchHHHHHHhhcccccceEEEecCCCc------------------------------------EEEEecC
Confidence            9999999999999999999999999999999988754                                    4899999


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC----------CCceEE-----------
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT----------TGKFVA-----------  396 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~----------~~~~~~-----------  396 (473)
                      ||+++||....-+.... +.-.-..++|++-.+.++.++.|.+.|.|.+= +-          +|+.+.           
T Consensus       248 DGTvriWhs~Ty~lE~t-Ln~gleRvW~I~~~k~~~~i~vG~Deg~i~v~-lgreeP~vsMd~~gKIiwa~~~ei~~~~~  325 (794)
T KOG0276|consen  248 DGTVRIWNSKTYKLEKT-LNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK-LGREEPAVSMDSNGKIIWAVHSEIQAVNL  325 (794)
T ss_pred             CccEEEecCcceehhhh-hhcCCceEEEEeecCCCCeEEEeccCCcEEEE-ccCCCCceeecCCccEEEEcCceeeeeec
Confidence            99999998654433322 22234579999999988889999888766542 11          111110           


Q ss_pred             -EeeCC----c-----------c----CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCC
Q 011978          397 -VFRGH----V-----------G----PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG  456 (473)
Q Consensus       397 -~~~~h----~-----------~----~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~  456 (473)
                       .....    .           +    ....++-||+|+++++|+ ||.-.||..-..+..     .-++-....|++|.
T Consensus       326 ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~RnK-----~fG~~~eFvw~~ds  399 (794)
T KOG0276|consen  326 KSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALRNK-----AFGSGLEFVWAADS  399 (794)
T ss_pred             eeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehhhc-----ccccceeEEEcCCC
Confidence             00000    0           0    013456789999887765 888888865332221     12233456677776


Q ss_pred             CEEEEEeCCCcEEec
Q 011978          457 EKVASGGKDRVLKLW  471 (473)
Q Consensus       457 ~~l~s~~~D~~i~~w  471 (473)
                      +.++.-.+++.|+++
T Consensus       400 ne~avRes~~~vki~  414 (794)
T KOG0276|consen  400 NEFAVRESNGNVKIF  414 (794)
T ss_pred             CeEEEEecCCceEEE
Confidence            667777666766665

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=240.38  Aligned_cols=291  Identities=20%  Similarity=0.338  Sum_probs=239.7

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      ...++.||.+.|.++.|+.||.+||||..+|.|+||+..++.....+...-..+.=|.|+|-+..|++|+.||.+-.|.+
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            55678999999999999999999999999999999999999877777655667888999999999999999999999999


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc-cccEEEEEecCCC-eEEEe
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG-VIYTG  257 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~-~l~s~  257 (473)
                      .++ ...+.+.||..++++-.|.|     ++++++++..||+|++||..++..+..+.+- ....+|+.++..+ .+++|
T Consensus       178 p~~-~~~kv~~Gh~~~ct~G~f~p-----dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g  251 (399)
T KOG0296|consen  178 PSQ-ALCKVMSGHNSPCTCGEFIP-----DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG  251 (399)
T ss_pred             CCc-ceeeEecCCCCCcccccccC-----CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence            875 34457899999998877766     6889999999999999999999888776532 3356677777766 57789


Q ss_pred             ecCCeEEEEECCCCceeeeeec--------cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          258 SQDCTIKVWETTQGKLIRELKG--------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      ..++.+++-...+|+.+....+        +...+.++.+.+..                                 ..-
T Consensus       252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s---------------------------------s~l  298 (399)
T KOG0296|consen  252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS---------------------------------SKL  298 (399)
T ss_pred             cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc---------------------------------ccc
Confidence            9999999999888887765542        11122222111100                                 011


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~  409 (473)
                      ...++|+-||+|.|||.....  ....-.|...|..+.|-+ ..+|++++.||.|+.||.++|+++..+.||..+|.+++
T Consensus       299 pL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~  375 (399)
T KOG0296|consen  299 PLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA  375 (399)
T ss_pred             chhhcccccceEEEEecccch--hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEE
Confidence            246889999999999986543  233456788899999998 78999999999999999999999999999999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECC
Q 011978          410 WSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      ++|+.++++++|.|++.+||++.
T Consensus       376 ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  376 LSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999864

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.6e-35  Score=246.45  Aligned_cols=284  Identities=28%  Similarity=0.432  Sum_probs=236.9

Q ss_pred             CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE--------cCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--------TGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~--------~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw  177 (473)
                      |...-+.|..|||||++|++|+-||.|.+||..+++....+        --+.++|.|+.||.|...|++|+.||+|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            55667889999999999999999999999999887643322        2367899999999999999999999999999


Q ss_pred             eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEE
Q 011978          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT  256 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s  256 (473)
                      .+++|.++...-.+|++.|+++.|+.     ++..+++++.|.++++.-+.+|+++..+.||...|+.+.|.+|| .+++
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSr-----D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis  365 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSR-----DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS  365 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEcc-----CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence            99999998887789999999999875     56789999999999999999999999999999999999999998 6999


Q ss_pred             eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      ++.||+|++|+..+..++.+++..+.                                                      
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~~------------------------------------------------------  391 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLGT------------------------------------------------------  391 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCCC------------------------------------------------------
Confidence            99999999999998888776653211                                                      


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeC---CccCEEEEEEec
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQISWSA  412 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~---h~~~v~~v~~sp  412 (473)
                                             ...|+++-.-| +...++.+...++|++-++. |+.+..|..   ..+...+.+.||
T Consensus       392 -----------------------d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSp  447 (508)
T KOG0275|consen  392 -----------------------DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSP  447 (508)
T ss_pred             -----------------------cccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecC
Confidence                                   11222332223 33455566666677777653 555655532   123455667899


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       413 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .|.++.+.+.|+.++.|...+|++..++.-|...+..+.-+|..+.||+=+.||.+++|.
T Consensus       448 kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  448 KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            999999999999999999999999999999999999999999999999999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-32  Score=255.19  Aligned_cols=355  Identities=25%  Similarity=0.376  Sum_probs=268.2

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~  186 (473)
                      -...|+|+.-+|+..+||.|..||.|+||+..++.....+.+|...|+++.|...|..|++|+.|+.|.+||+-... ..
T Consensus        64 ~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-Gl  142 (888)
T KOG0306|consen   64 KKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-GL  142 (888)
T ss_pred             ccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-ee
Confidence            34589999999999999999999999999999888889999999999999999999999999999999999986433 22


Q ss_pred             ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEE
Q 011978          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW  266 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w  266 (473)
                      ..+.||+..|+..-|..     +...+++.+.|+.+++||+.+..|..+.-.|...|+.+++.+ ..+++++.|+.+++|
T Consensus       143 ~rL~GHkd~iT~~~F~~-----~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~  216 (888)
T KOG0306|consen  143 FRLRGHKDSITQALFLN-----GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-KLLVTAGTDSELKVW  216 (888)
T ss_pred             EEeecchHHHhHHhccC-----CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-ceEEEEecCCceEEE
Confidence            45789999988876653     346889999999999999999999999999999999999987 578999999999999


Q ss_pred             ECCCC-------c-----eeeee--eccCceEEEEEecccceeeeccccCCCc--ccCCHHHHHHH--------------
Q 011978          267 ETTQG-------K-----LIREL--KGHGHWVNSLALSTEYALRTGAFDHTGK--QYSSPEEMKKA--------------  316 (473)
Q Consensus       267 d~~~~-------~-----~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------------  316 (473)
                      ++...       .     ...++  ++.+..++-+.-..+..+.+...|....  ...+.++....              
T Consensus       217 ~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t  296 (888)
T KOG0306|consen  217 ELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAET  296 (888)
T ss_pred             EeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccc
Confidence            98211       0     00111  1112233322222222222222222111  11112111100              


Q ss_pred             -------------HHhhhhcc------------cCCC-CceEEEecCCceEEEEeCCCCCCC--------eeeecCcccc
Q 011978          317 -------------ALERYNKI------------KGNA-PERLVSGSDDFTMFLWEPAVSKQP--------KTRMTGHQQL  362 (473)
Q Consensus       317 -------------~~~~~~~~------------~~~~-~~~l~~~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~  362 (473)
                                   .+.++..+            .+.. ...++. -.++++.++.+......        .....+|...
T Consensus       297 ~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~d  375 (888)
T KOG0306|consen  297 EENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSD  375 (888)
T ss_pred             cccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhh
Confidence                         00111111            1111 112332 55667777765542211        2356789999


Q ss_pred             eeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc
Q 011978          363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG  442 (473)
Q Consensus       363 v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  442 (473)
                      |+++++|.+...+++|+. +.+++|+..+.+++.++..  +-+.+..|-|.++++++|...|.+.+||+.+.....+++.
T Consensus       376 VRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A  452 (888)
T KOG0306|consen  376 VRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRA  452 (888)
T ss_pred             eeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhc
Confidence            999999999998888865 5799999999999999873  4889999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          443 HADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       443 h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |.+.|+.++.+||++.+++||.|++|++|.
T Consensus       453 HdgaIWsi~~~pD~~g~vT~saDktVkfWd  482 (888)
T KOG0306|consen  453 HDGAIWSISLSPDNKGFVTGSADKTVKFWD  482 (888)
T ss_pred             cccceeeeeecCCCCceEEecCCcEEEEEe
Confidence            999999999999999999999999999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-33  Score=229.74  Aligned_cols=281  Identities=23%  Similarity=0.428  Sum_probs=228.3

Q ss_pred             EEEEECCC--CCe-EEEE-----eCCCeEEEEeCCCCceeEEEc--CCCCCEEEEEECCC-CCeEEEEecCCeEEEeeCC
Q 011978          112 LSVAFSPD--GRQ-LASG-----SGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       112 ~~~~~sp~--~~~-lat~-----s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~~  180 (473)
                      .++.|||-  +++ +|++     .+.|.+.|-++...+.+..+.  .-.+.+..++|+++ ...+++++.||.+++||..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            35778884  333 2333     257889999886444343332  34678999999985 4678899999999999965


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--CeEEEee
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGS  258 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~  258 (473)
                      ........++.|...|.++.|++..    ...++++|.|++||+|+....+.+.++.||...|....|+|.  +.+++++
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~----r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVR----RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             CCCcchhHHHhhhhheEEecccccc----ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence            4444445678999999999998853    467899999999999999999999999999999999999974  4788999


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|+++++||++.......+..|...+.+..++.-                                   ....+++|+.|
T Consensus       168 gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky-----------------------------------~~~vl~Tg~vd  212 (311)
T KOG0277|consen  168 GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY-----------------------------------NHNVLATGGVD  212 (311)
T ss_pred             CCceEEEEEecCCCceeEEEeccceeEeeccccc-----------------------------------CCcEEEecCCC
Confidence            9999999998864333337777767777665431                                   24468999999


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEec-CCC
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSA-DSR  415 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp-~g~  415 (473)
                      +.|+.||++..+.+...+.+|.-.|+.+.|||. ..+||+++.|-++|+||...+ .++.++.-|+..|..+.||+ ++.
T Consensus       213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~  292 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPG  292 (311)
T ss_pred             ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCc
Confidence            999999999999999999999999999999995 578999999999999999854 45667778999999999998 667


Q ss_pred             EEEEEeCCCcEEEEEC
Q 011978          416 LLLSGSKDSTLKVWDI  431 (473)
Q Consensus       416 ~l~s~s~Dg~i~iwd~  431 (473)
                      ++|+++.|+.++||+.
T Consensus       293 ~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  293 QVASTGWDELLYVWNP  308 (311)
T ss_pred             eeeecccccceeeecc
Confidence            9999999999999984

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.2e-31  Score=237.77  Aligned_cols=412  Identities=20%  Similarity=0.302  Sum_probs=293.1

Q ss_pred             HHHHHHhcCCCCcceEEEecCeeecccHHhHHHhcCCCcccEEEEEEE-eceeEEEeecccccccccCCcccEEEEEECC
Q 011978           40 QIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQ-PQAVFRIRPVNRCSATIAGHTEAVLSVAFSP  118 (473)
Q Consensus        40 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp  118 (473)
                      ..-+.++.+..++.+.+.++|...+.++--  .       +.-.+.|. +.-.......++..+.+.||++.|.|++.+|
T Consensus        44 ~~d~~~P~~kl~LewvygYRG~dcR~Nly~--l-------ptgE~vyfvA~V~Vl~n~ee~~Qr~y~GH~ddikc~~vHP  114 (626)
T KOG2106|consen   44 MADVELPTEKLKLEWVYGYRGVDCRNNLYL--L-------PTGELVYFVAAVGVLYNWEERSQRHYLGHNDDIKCMAVHP  114 (626)
T ss_pred             hhhccCcccCceeEEEEeecceeeeceeEE--c-------cCccEEEEeccEEEEEeehhhhcccccCCCCceEEEeecC
Confidence            344555666677888999999988766521  1       11123332 3222223333445667889999999999999


Q ss_pred             CCCeEEEEeCCC--------eEEEEeCCCCceeEEEcCCCCCEEEEEECCC--CCeEEEE--ecCCeEEEeeCCCCcccc
Q 011978          119 DGRQLASGSGDT--------TVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD--GKHLVSG--SKAGELQCWDPQTGKPSG  186 (473)
Q Consensus       119 ~~~~lat~s~d~--------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~d--g~~l~s~--~~dg~i~iwd~~~~~~~~  186 (473)
                      |.-++|+|..-|        .+||||..+-.-+..+......|.|++||+-  |.+|...  +.+..+.+||++.+....
T Consensus       115 dri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~  194 (626)
T KOG2106|consen  115 DRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG  194 (626)
T ss_pred             CceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccC
Confidence            999999886554        5999997766555555566788999999983  4555554  334568999998776543


Q ss_pred             ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE---ecCc-cccEEEEEecCCCeEEEeecCCe
Q 011978          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC---LSGH-TLAVTCVKWGGDGVIYTGSQDCT  262 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~---~~~h-~~~v~~~~~~~~~~l~s~~~d~~  262 (473)
                       .....+..|....|+|...    +.+++++. +.+.+|+.+.+.....   +.++ ...|.|++|.++|.+++|..+|.
T Consensus       195 -~vk~sne~v~~a~FHPtd~----nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~  268 (626)
T KOG2106|consen  195 -PVKTSNEVVFLATFHPTDP----NLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGN  268 (626)
T ss_pred             -cceeccceEEEEEeccCCC----cEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCce
Confidence             3444566778889999643    46667665 8999999988765432   3332 35799999999999999999999


Q ss_pred             EEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC----------CHHHHHHHH---------------
Q 011978          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS----------SPEEMKKAA---------------  317 (473)
Q Consensus       263 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~---------------  317 (473)
                      |.+|+..+.+..++...|...|.++....+..+..+..|.....+.          .|++.-...               
T Consensus       269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtr  348 (626)
T KOG2106|consen  269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTR  348 (626)
T ss_pred             EEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeecc
Confidence            9999999888888888999999999888777666654442211111          111100000               


Q ss_pred             ---H-----hhhhc------------ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE
Q 011978          318 ---L-----ERYNK------------IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS  377 (473)
Q Consensus       318 ---~-----~~~~~------------~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las  377 (473)
                         +     ..+..            ......+.+++++.|+.+.+|+  ..+....+..  .+...|++|+|.| .+|.
T Consensus       349 N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~--~d~~~~~~fhpsg-~va~  423 (626)
T KOG2106|consen  349 NFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII--EDPAECADFHPSG-VVAV  423 (626)
T ss_pred             ceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe--cCceeEeeccCcc-eEEE
Confidence               0     00000            0112235688999999999998  2222223332  3567899999999 9999


Q ss_pred             EECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eecc-cccCCCEEEEEEeeC
Q 011978          378 ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDL-PGHADEVFAVDWSPD  455 (473)
Q Consensus       378 gs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~-~~~~-~~h~~~i~~l~~s~d  455 (473)
                      |...|...+.|.++...+..-.. ..+++.++|+|+|.+||.||.|+.|+||-+..... .... .-|...|+.|+||+|
T Consensus       424 Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D  502 (626)
T KOG2106|consen  424 GTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD  502 (626)
T ss_pred             eeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence            99999999999999766666555 88999999999999999999999999999865332 2211 113378999999999


Q ss_pred             CCEEEEEeCCCcEEecc
Q 011978          456 GEKVASGGKDRVLKLWM  472 (473)
Q Consensus       456 ~~~l~s~~~D~~i~~w~  472 (473)
                      +++|.+.+.|-.|..|.
T Consensus       503 s~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  503 SQFLVSNSGDYEILYWK  519 (626)
T ss_pred             CceEEeccCceEEEEEc
Confidence            99999999999999994

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1e-33  Score=240.53  Aligned_cols=242  Identities=26%  Similarity=0.494  Sum_probs=223.5

Q ss_pred             ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEE
Q 011978          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV  265 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~  265 (473)
                      ..+.+|.++|.++++.|.     ...|++|+.|++++|||+.+++...++.||...|..+++++.. ++++++.|+.|+-
T Consensus       145 rVi~gHlgWVr~vavdP~-----n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPG-----NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             hhhhhccceEEEEeeCCC-----ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            357899999999999884     4699999999999999999999999999999999999998765 7999999999999


Q ss_pred             EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (473)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  345 (473)
                      ||++..+.++...+|-..|.+++++|.                                    .+.+++|+.|.++++||
T Consensus       220 wDLe~nkvIR~YhGHlS~V~~L~lhPT------------------------------------ldvl~t~grDst~RvWD  263 (460)
T KOG0285|consen  220 WDLEYNKVIRHYHGHLSGVYCLDLHPT------------------------------------LDVLVTGGRDSTIRVWD  263 (460)
T ss_pred             EechhhhhHHHhccccceeEEEecccc------------------------------------ceeEEecCCcceEEEee
Confidence            999999999999999999999998874                                    34699999999999999


Q ss_pred             CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc
Q 011978          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST  425 (473)
Q Consensus       346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~  425 (473)
                      ++.. .....+.||...|.++.+.|-...+++||.|++|++||+..|+...++..|.-.|.+++.+|....+|++|.|. 
T Consensus       264 iRtr-~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-  341 (460)
T KOG0285|consen  264 IRTR-ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-  341 (460)
T ss_pred             eccc-ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-
Confidence            8754 45678899999999999999888899999999999999999999999999999999999999999999999885 


Q ss_pred             EEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          426 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       426 i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+-|++..+..++.+.+|..-|++++...|| ++++|+..|.|.+|+
T Consensus       342 ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwd  387 (460)
T KOG0285|consen  342 IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD  387 (460)
T ss_pred             ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence            8999999999999999999999999988886 789999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.3e-33  Score=234.79  Aligned_cols=247  Identities=26%  Similarity=0.464  Sum_probs=209.3

Q ss_pred             eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (473)
Q Consensus       142 ~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~  221 (473)
                      ++..+.+|++.|..+.|+|+|..|++|+.|..|.+|+......-.-.+.+|++.|..+.|.+     ++..+++++.|.+
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-----d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-----DGSHILSCGTDKT  113 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-----CCCEEEEecCCce
Confidence            44557899999999999999999999999999999997554433445779999999998876     5678999999999


Q ss_pred             EEEEECCCCeEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978          222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (473)
Q Consensus       222 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (473)
                      ++.||+++++++..+++|...|.++.-..-|  .+.+++.|+++++||.++...++++.                     
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---------------------  172 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---------------------  172 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---------------------
Confidence            9999999999999999999999988754434  46688899999999988654433221                     


Q ss_pred             ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE
Q 011978          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (473)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs  379 (473)
                                                                                 ....++++.|..++..+.+|+
T Consensus       173 -----------------------------------------------------------~kyqltAv~f~d~s~qv~sgg  193 (338)
T KOG0265|consen  173 -----------------------------------------------------------NKYQLTAVGFKDTSDQVISGG  193 (338)
T ss_pred             -----------------------------------------------------------cceeEEEEEecccccceeecc
Confidence                                                                       123467889999999999999


Q ss_pred             CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeecccccCC----CEEEEE
Q 011978          380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ----KLKQDLPGHAD----EVFAVD  451 (473)
Q Consensus       380 ~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~----~~~~~~~~h~~----~i~~l~  451 (473)
                      -|+.|++||++....+.+++||..+|+.+..+|+|.++.+-+.|.++++||++..    +.+..+.||..    ....++
T Consensus       194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence            9999999999999999999999999999999999999999999999999999853    33555555542    456789


Q ss_pred             EeeCCCEEEEEeCCCcEEeccC
Q 011978          452 WSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       452 ~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      |||+++++..|+.|+.+.+|+.
T Consensus       274 wsp~~~~i~ags~dr~vyvwd~  295 (338)
T KOG0265|consen  274 WSPNGTKITAGSADRFVYVWDT  295 (338)
T ss_pred             ccCCCCccccccccceEEEeec
Confidence            9999999999999999999973

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4e-35  Score=248.28  Aligned_cols=228  Identities=31%  Similarity=0.584  Sum_probs=204.5

Q ss_pred             CCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCc
Q 011978          193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK  272 (473)
Q Consensus       193 ~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  272 (473)
                      .+.|.++.+.       ...+++|..|.+|+|||..+..|...+.||++.|.|+.|.. ..+++|+.|.+|++||+.+|+
T Consensus       197 skgVYClQYD-------D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  197 SKGVYCLQYD-------DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             CCceEEEEec-------chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCc
Confidence            4557777653       36799999999999999999999999999999999999974 389999999999999999999


Q ss_pred             eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC-
Q 011978          273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-  351 (473)
Q Consensus       273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-  351 (473)
                      .++++-+|...|..+.++..                                      .+++++.|.++.+||+..... 
T Consensus       269 ~l~tlihHceaVLhlrf~ng--------------------------------------~mvtcSkDrsiaVWdm~sps~i  310 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFSNG--------------------------------------YMVTCSKDRSIAVWDMASPTDI  310 (499)
T ss_pred             hhhHHhhhcceeEEEEEeCC--------------------------------------EEEEecCCceeEEEeccCchHH
Confidence            99999999999988887643                                      588999999999999865442 


Q ss_pred             -CeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978          352 -PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD  430 (473)
Q Consensus       352 -~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd  430 (473)
                       ....+.||...|+.+.|+  .+|++++|.|++|++|+..+++++.++.+|...|-|+.+  .|+++++||.|.+|++||
T Consensus       311 t~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwd  386 (499)
T KOG0281|consen  311 TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD  386 (499)
T ss_pred             HHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEe
Confidence             234578999999999996  459999999999999999999999999999999999887  589999999999999999


Q ss_pred             CCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          431 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       431 ~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +..|..+..+.||+.-|.++.|.  .+.++||+.||+|++|+
T Consensus       387 i~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWd  426 (499)
T KOG0281|consen  387 IECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWD  426 (499)
T ss_pred             ccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEe
Confidence            99999999999999999999995  68999999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.7e-35  Score=251.14  Aligned_cols=246  Identities=24%  Similarity=0.417  Sum_probs=215.9

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~  182 (473)
                      .+..|.++|.++.|+++|.++++|+.+|.|++|+.+-.........|...|.+++|||+...+++++.||+|+|||....
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~  212 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP  212 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence            35789999999999999999999999999999997644322222345588999999999999999999999999998776


Q ss_pred             ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC
Q 011978          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC  261 (473)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~  261 (473)
                      +... .+.+|.-.|.++.|+|.     ...++++|.|..|++||.+++.|+.++.+|...|..+.|++++ .|++++.|.
T Consensus       213 kee~-vL~GHgwdVksvdWHP~-----kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~  286 (464)
T KOG0284|consen  213 KEER-VLRGHGWDVKSVDWHPT-----KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ  286 (464)
T ss_pred             chhh-eeccCCCCcceeccCCc-----cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence            6543 46999999999999994     3589999999999999999999999999999999999999887 799999999


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      .++++|+++-+.+..+++|...+.++.++|-.                                   ...|.+|+.|+.+
T Consensus       287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~-----------------------------------~~lftsgg~Dgsv  331 (464)
T KOG0284|consen  287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN-----------------------------------ESLFTSGGSDGSV  331 (464)
T ss_pred             eEEEEehhHhHHHHHhhcchhhheeecccccc-----------------------------------ccceeeccCCCce
Confidence            99999999888888899999999999887742                                   3468899999999


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~  389 (473)
                      ..|...........-.+|...|++++|+|-|..||+|+.|+++++|..
T Consensus       332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            999987555555566789999999999999999999999999999964

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=6.9e-33  Score=264.27  Aligned_cols=285  Identities=33%  Similarity=0.605  Sum_probs=250.3

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  185 (473)
                      |...+.+..|+  +.++++++.|++|++||..++..+.. +.+|.+.|.++++..-+..|++|+.|.++++||..+|.+.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            56678888888  67899999999999999999887777 9999999999999876789999999999999999999876


Q ss_pred             cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEE
Q 011978          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV  265 (473)
Q Consensus       186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~  265 (473)
                      . .+.+|...+.++...+       ..+++|+.|.+|++|++.+++++..+.+|..+|.++..+ +..+++|+.|++|++
T Consensus       285 ~-~l~gh~stv~~~~~~~-------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~V  355 (537)
T KOG0274|consen  285 H-SLQGHTSSVRCLTIDP-------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKV  355 (537)
T ss_pred             E-EecCCCceEEEEEccC-------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEE
Confidence            5 4679999999887654       367888999999999999999999999999999999998 668999999999999


Q ss_pred             EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (473)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  345 (473)
                      ||..++++++.+.+|..+|.++.+...                                     ..+++|+.|++|++||
T Consensus       356 W~~~~~~cl~sl~gH~~~V~sl~~~~~-------------------------------------~~~~Sgs~D~~IkvWd  398 (537)
T KOG0274|consen  356 WDPRTGKCLKSLSGHTGRVYSLIVDSE-------------------------------------NRLLSGSLDTTIKVWD  398 (537)
T ss_pred             EEhhhceeeeeecCCcceEEEEEecCc-------------------------------------ceEEeeeeccceEeec
Confidence            999999999999999999999876531                                     3689999999999999


Q ss_pred             CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC-CccCEEEEEEecCCCEEEEEeCCC
Q 011978          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQISWSADSRLLLSGSKDS  424 (473)
Q Consensus       346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~g~~l~s~s~Dg  424 (473)
                      +....+....+.+|...+.++.+  .+++|++++.|++|++||..+++++.++.+ |.+.|..+++.  ...+++++.||
T Consensus       399 l~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~  474 (537)
T KOG0274|consen  399 LRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDG  474 (537)
T ss_pred             CCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCC
Confidence            98764566678888888866554  578999999999999999999999999998 77889998886  45788899999


Q ss_pred             cEEEEECCCCceeeccccc
Q 011978          425 TLKVWDIRTQKLKQDLPGH  443 (473)
Q Consensus       425 ~i~iwd~~~~~~~~~~~~h  443 (473)
                      ++++||+++++....+-.+
T Consensus       475 ~~~l~dl~~~~~~~~l~~~  493 (537)
T KOG0274|consen  475 SVKLWDLRSGTLIRTLLST  493 (537)
T ss_pred             eeEEEecccCchhhhhhhc
Confidence            9999999998887765333

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4.9e-34  Score=231.21  Aligned_cols=286  Identities=24%  Similarity=0.384  Sum_probs=241.3

Q ss_pred             ccCCcccEEEEEEC---CCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          104 IAGHTEAVLSVAFS---PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       104 ~~gh~~~V~~~~~s---p~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ..||+.+|..++||   |+|-+|++++.|+.-.+-+-+++.=+..+.+|.+.|++...+.+....++++.|-+-++||.-
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~   89 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV   89 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence            46899999999998   578899999999999998888888888999999999999999988888999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe-EEEEecCccccEEEEEec-CCCeEEEee
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKWG-GDGVIYTGS  258 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~-~~~~l~s~~  258 (473)
                      +|..+.  ...|+..|..++|..     +..++++|+.+..+|++|+...+ ....+.+|...|..+.|. .|..+++++
T Consensus        90 tgdelh--sf~hkhivk~~af~~-----ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa  162 (334)
T KOG0278|consen   90 TGDELH--SFEHKHIVKAVAFSQ-----DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA  162 (334)
T ss_pred             hhhhhh--hhhhhheeeeEEecc-----cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence            987654  245777788888764     66789999999999999987643 456788999999999996 456789999


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|++||+||.++++.++++... .+|.++.++++                                     ..+++....
T Consensus       163 dd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~d-------------------------------------G~ilTia~g  204 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQD-------------------------------------GRILTIAYG  204 (334)
T ss_pred             cCCceEEEEeccCcEEEEEecC-CCCcceeeccC-------------------------------------CCEEEEecC
Confidence            9999999999999998887642 34555555443                                     357778888


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe-eCCccCEEEEEEecCCCEE
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQISWSADSRLL  417 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~g~~l  417 (473)
                      +.|.+||...-...+  ...-+..|.+..++|+...+++|+.|..++.||+.+|+.+..+ ++|.++|.||.|+|||...
T Consensus       205 ssV~Fwdaksf~~lK--s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~y  282 (334)
T KOG0278|consen  205 SSVKFWDAKSFGLLK--SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELY  282 (334)
T ss_pred             ceeEEecccccccee--eccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCcee
Confidence            899999975433222  2223456888999999999999999999999999999999887 8999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCce
Q 011978          418 LSGSKDSTLKVWDIRTQKL  436 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~~~~~  436 (473)
                      |+||.||+|+||....++.
T Consensus       283 AsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  283 ASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             eccCCCceEEEEEecCCCc
Confidence            9999999999999876654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=6.6e-34  Score=246.10  Aligned_cols=288  Identities=22%  Similarity=0.407  Sum_probs=234.5

Q ss_pred             cccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978           97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (473)
Q Consensus        97 ~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i  174 (473)
                      +..+...+..|.+.|..+.|-++...|++|+.|..|++|++...+  ....+.+..+.|+++.|.++++++++++.|+.+
T Consensus       164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~  243 (459)
T KOG0288|consen  164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL  243 (459)
T ss_pred             chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence            345666778899999999999999999999999999999987765  345566778889999999999999999999999


Q ss_pred             EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeE
Q 011978          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI  254 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l  254 (473)
                      ++|+....+.. ..+.+|.+.|+++.|...+     .+.++|+.|+++++||+....|..+...- ..+..+..+ ...+
T Consensus       244 r~Wnvd~~r~~-~TLsGHtdkVt~ak~~~~~-----~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~-~~~~  315 (459)
T KOG0288|consen  244 RLWNVDSLRLR-HTLSGHTDKVTAAKFKLSH-----SRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS-ISDV  315 (459)
T ss_pred             eeeeccchhhh-hhhcccccceeeehhhccc-----cceeeccccchhhhhhhhhhheecccccc-ccccceEec-ceee
Confidence            99999887754 4688999999998876532     35899999999999999988877654321 122233322 3356


Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      ++|..|++|++||.+..........                                                       
T Consensus       316 ~SgH~DkkvRfwD~Rs~~~~~sv~~-------------------------------------------------------  340 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSADKTRSVPL-------------------------------------------------------  340 (459)
T ss_pred             eecccccceEEEeccCCceeeEeec-------------------------------------------------------
Confidence            7788888888888776654433221                                                       


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC----ccCEEEEEE
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH----VGPVYQISW  410 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h----~~~v~~v~~  410 (473)
                                               .+.|+++..+++|..|.+.+.|.++.+.|+++.+....+.+.    ..-.+.+.|
T Consensus       341 -------------------------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf  395 (459)
T KOG0288|consen  341 -------------------------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF  395 (459)
T ss_pred             -------------------------CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence                                     135888999999999999999999999999998877776542    123789999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCCceeecccccCC--CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          411 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD--EVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       411 sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~--~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ||++.|+|+||.||.|+||++.++++...+.....  .|+++.|+|.|..|++++.++.+.+|.
T Consensus       396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            99999999999999999999999998777665443  599999999999999999999999995

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-31  Score=223.59  Aligned_cols=282  Identities=23%  Similarity=0.361  Sum_probs=227.4

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec--CCeEEEeeCCCCcc
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKP  184 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~--dg~i~iwd~~~~~~  184 (473)
                      -...|+++.|+++|.+|++++.|.+++|||..+++++..+..++..+..+.|......++.++.  |.+|+..++.+.+.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            4678999999999999999999999999999999998888888889999999887777777776  88999999998887


Q ss_pred             ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCC-eE
Q 011978          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-TI  263 (473)
Q Consensus       185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~-~i  263 (473)
                      ++ .+.||.+.|+.+..+|..     +.|++++-|++|++||++..+|...+.-..  -..++|+|+|++++.+..+ .|
T Consensus        93 lR-YF~GH~~~V~sL~~sP~~-----d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~I  164 (311)
T KOG1446|consen   93 LR-YFPGHKKRVNSLSVSPKD-----DTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELI  164 (311)
T ss_pred             EE-EcCCCCceEEEEEecCCC-----CeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeE
Confidence            65 689999999999988853     689999999999999999888876664333  2347899999866655544 99


Q ss_pred             EEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEE
Q 011978          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (473)
Q Consensus       264 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  343 (473)
                      ++||++.-..     +   +-..                                              +.         
T Consensus       165 kLyD~Rs~dk-----g---PF~t----------------------------------------------f~---------  181 (311)
T KOG1446|consen  165 KLYDLRSFDK-----G---PFTT----------------------------------------------FS---------  181 (311)
T ss_pred             EEEEecccCC-----C---Ccee----------------------------------------------Ec---------
Confidence            9999864210     0   0000                                              00         


Q ss_pred             EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCE---EEEEEecCCCEEEEE
Q 011978          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV---YQISWSADSRLLLSG  420 (473)
Q Consensus       344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v---~~v~~sp~g~~l~s~  420 (473)
                        +         ..+.....+.+.|||||++|+.+...+.+++.|.-+|.....+.++...-   .+..|+||++++.+|
T Consensus       182 --i---------~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g  250 (311)
T KOG1446|consen  182 --I---------TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG  250 (311)
T ss_pred             --c---------CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence              0         00112346779999999999999999999999999999988888765432   578899999999999


Q ss_pred             eCCCcEEEEECCCCceeecccc-cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          421 SKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       421 s~Dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +.||+|.+|++++++....+.+ +...+.++.|+|.--  .-++.+..+.+|.
T Consensus       251 s~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~--mf~sa~s~l~fw~  301 (311)
T KOG1446|consen  251 SDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA--MFVSASSNLVFWL  301 (311)
T ss_pred             cCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee--eeeecCceEEEEe
Confidence            9999999999999998888877 678899999999654  4455556788884

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-32  Score=222.39  Aligned_cols=283  Identities=22%  Similarity=0.353  Sum_probs=228.0

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~  182 (473)
                      .+.||..+++.+.++.+|++|++++.|.++.||=..+++.+....+|.+.|+|++.+-+.+++++|+.|.++++||.++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46899999999999999999999999999999988888889999999999999999999999999999999999999999


Q ss_pred             ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC-----CCcEEEEECC-------CCeEEEEecCccccEEEEEecC
Q 011978          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVS-------LRKCVICLSGHTLAVTCVKWGG  250 (473)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-----dg~i~iwd~~-------~~~~~~~~~~h~~~v~~~~~~~  250 (473)
                      +++...  .-...|..+.|++     .+++++.+..     .+.|.++|++       ...+...+..+...++.+-|.+
T Consensus        85 k~la~~--k~~~~Vk~~~F~~-----~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   85 KQLATW--KTNSPVKRVDFSF-----GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             cEEEEe--ecCCeeEEEeecc-----CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            876432  2344566676665     4455555433     4678999987       3455666677778889999987


Q ss_pred             CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          251 DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       251 ~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      -+ .|++|..||.|..||+++|+....                                                     
T Consensus       158 l~~~ii~Ghe~G~is~~da~~g~~~v~-----------------------------------------------------  184 (327)
T KOG0643|consen  158 LGETIIAGHEDGSISIYDARTGKELVD-----------------------------------------------------  184 (327)
T ss_pred             cCCEEEEecCCCcEEEEEcccCceeee-----------------------------------------------------
Confidence            65 688999999999999988754321                                                     


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~  409 (473)
                                               ....|...|+.++++||..++++||.|.+-++||..+.+++.++.- ..||++.+
T Consensus       185 -------------------------s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa  238 (327)
T KOG0643|consen  185 -------------------------SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA  238 (327)
T ss_pred             -------------------------chhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-ccccccee
Confidence                                     0113455788999999999999999999999999999999999874 56999999


Q ss_pred             EecCCCEEEEEeCCCcEEE--EECCCC------------ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          410 WSADSRLLLSGSKDSTLKV--WDIRTQ------------KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~i--wd~~~~------------~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      ++|...+++.|+.....-+  =+.+.+            +.+..++||-++|++++|+|||+..+||+.||.|++.
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence            9997777766654322211  112223            2345678999999999999999999999999999985

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.4e-32  Score=261.76  Aligned_cols=240  Identities=33%  Similarity=0.619  Sum_probs=211.4

Q ss_pred             CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc-cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (473)
Q Consensus       149 ~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~  227 (473)
                      +...|.++.|+++|+.+++++.++.+++|+..+++ .....+.+|...|..+.|+|     ++..+++++.|+++++||+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-----d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-----DGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-----CCcEEEEecCCceEEEeec
Confidence            36789999999999999999999999999997666 12234589999999999988     5569999999999999999


Q ss_pred             -CCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCc
Q 011978          228 -SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (473)
Q Consensus       228 -~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (473)
                       ..+.++.++.+|...|++++|++++ .+++|+.|++|++||++++++.+.+.                           
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---------------------------  285 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK---------------------------  285 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------------------
Confidence             5568999999999999999999988 68899999999999999877665443                           


Q ss_pred             ccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEE
Q 011978          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (473)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~  385 (473)
                                                                          +|.+.|++++|++++++|++++.|+.|+
T Consensus       286 ----------------------------------------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  286 ----------------------------------------------------GHSDGISGLAFSPDGNLLVSASYDGTIR  313 (456)
T ss_pred             ----------------------------------------------------ccCCceEEEEECCCCCEEEEcCCCccEE
Confidence                                                                4556788899999999999999999999


Q ss_pred             EEeCCCCc--eEEEeeCCccC--EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC---EEEEEEeeCCCE
Q 011978          386 LWNGTTGK--FVAVFRGHVGP--VYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE---VFAVDWSPDGEK  458 (473)
Q Consensus       386 lwd~~~~~--~~~~~~~h~~~--v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~---i~~l~~s~d~~~  458 (473)
                      +||..++.  ++..+.++...  ++.+.|+|++.++++++.|+.+++||+..++......+|...   +++...++++++
T Consensus       314 vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (456)
T KOG0266|consen  314 VWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL  393 (456)
T ss_pred             EEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence            99999998  56777776655  999999999999999999999999999999988888888764   445566889999


Q ss_pred             EEEEeCCCcEEecc
Q 011978          459 VASGGKDRVLKLWM  472 (473)
Q Consensus       459 l~s~~~D~~i~~w~  472 (473)
                      +++|+.|+.|.+|.
T Consensus       394 i~sg~~d~~v~~~~  407 (456)
T KOG0266|consen  394 IYSGSEDGSVYVWD  407 (456)
T ss_pred             EEEEeCCceEEEEe
Confidence            99999999999996

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-33  Score=239.17  Aligned_cols=281  Identities=20%  Similarity=0.360  Sum_probs=224.5

Q ss_pred             cccccCCcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      +..|.||.++|.|++=+|.. ..+|+|+.||.|+|||+....+...+..|.+.|..+++..  ..+++++.|++|+.|.+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            45678999999999999987 7799999999999999999989999999999999999986  67899999999999987


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEEEe
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTG  257 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~  257 (473)
                      +.. .... +.+ +..+.++.     .......|+|||.  .|.|||......+..+.-....|.++.|++..  +|+++
T Consensus       137 ~~~-p~~t-ilg-~s~~~gId-----h~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~  206 (433)
T KOG0268|consen  137 DGP-PLHT-ILG-KSVYLGID-----HHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC  206 (433)
T ss_pred             cCC-ccee-eec-cccccccc-----cccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence            542 1111 111 11122222     1223356888875  58999998888887777777789999999864  67888


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      +.|+.|.+||++++..++.+.                                                       ..  
T Consensus       207 ~sDrsIvLyD~R~~~Pl~KVi-------------------------------------------------------~~--  229 (433)
T KOG0268|consen  207 ASDRSIVLYDLRQASPLKKVI-------------------------------------------------------LT--  229 (433)
T ss_pred             ccCCceEEEecccCCccceee-------------------------------------------------------ee--
Confidence            899999999999877654321                                                       00  


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCE
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRL  416 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~  416 (473)
                                             -.-+.|+|+|.+-.+++|+.|..++.||.+.. .++..+++|.+.|.+|.|||.|+-
T Consensus       230 -----------------------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E  286 (433)
T KOG0268|consen  230 -----------------------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE  286 (433)
T ss_pred             -----------------------ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch
Confidence                                   11356899998888999999999999999865 567889999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeeccccc-CCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978          417 LLSGSKDSTLKVWDIRTQKLKQDLPGH-ADEVFAVDWSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       417 l~s~s~Dg~i~iwd~~~~~~~~~~~~h-~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      +++||.|.+|+||.++.+......... -..|.++.||-|.++++|||.|+.|++|.+
T Consensus       287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            999999999999999876543332111 135899999999999999999999999975

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-32  Score=220.86  Aligned_cols=279  Identities=24%  Similarity=0.388  Sum_probs=226.2

Q ss_pred             EEEEECC--CCCeEEEE------ecCCeEEEeeCCCCccccc-cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978          154 LCIAWSA--DGKHLVSG------SKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (473)
Q Consensus       154 ~~l~~s~--dg~~l~s~------~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i  224 (473)
                      .++.|||  ++++.++.      ...|++.|.++..++.+.. .-..-.+.+..++|++.+-    +.+++++.||++++
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e----~~~~~a~GDGSLrl   87 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE----NQVIAASGDGSLRL   87 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc----ceEEEEecCceEEE
Confidence            4678888  34333322      2468899999864332221 1122345688899988543    47899999999999


Q ss_pred             EECCC-CeEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978          225 WDVSL-RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (473)
Q Consensus       225 wd~~~-~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (473)
                      ||+.. .+.+..++.|...|.++.|+.-.  .+++++.|++||+|+...++.+.++.+|...|....++|.         
T Consensus        88 ~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~---------  158 (311)
T KOG0277|consen   88 FDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH---------  158 (311)
T ss_pred             eccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCC---------
Confidence            99654 35677888999999999998643  5788899999999999999999999999999999988875         


Q ss_pred             CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEEC
Q 011978          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASF  380 (473)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~  380 (473)
                                                .++.++++|.|+++++||++...+... +..|...+.+..|+. +.++|+||+.
T Consensus       159 --------------------------~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~v  211 (311)
T KOG0277|consen  159 --------------------------IPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGV  211 (311)
T ss_pred             --------------------------CCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCC
Confidence                                      356799999999999999877654444 778888999999997 7789999999


Q ss_pred             CCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCC-ceeecccccCCCEEEEEEeeC-C
Q 011978          381 DKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPD-G  456 (473)
Q Consensus       381 d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~d-~  456 (473)
                      |+.||.||++.. .++..+.+|.-.|..|+|||.. ..||++|.|=+++|||...+ ..+.+..-|...+..++||+- .
T Consensus       212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~  291 (311)
T KOG0277|consen  212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDP  291 (311)
T ss_pred             CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccC
Confidence            999999999875 4678889999999999999964 58999999999999999754 345667778889999999864 5


Q ss_pred             CEEEEEeCCCcEEecc
Q 011978          457 EKVASGGKDRVLKLWM  472 (473)
Q Consensus       457 ~~l~s~~~D~~i~~w~  472 (473)
                      .++|+++.|..++||+
T Consensus       292 ~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  292 GQVASTGWDELLYVWN  307 (311)
T ss_pred             ceeeecccccceeeec
Confidence            6899999999999997

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-31  Score=215.60  Aligned_cols=240  Identities=23%  Similarity=0.374  Sum_probs=211.0

Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEE
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW  266 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~w  266 (473)
                      .+.++.+.|.++.|+.     ++++.++|+.|++|++|+...+.++.++.||...|..++.+.|+ .+++|+.|+.+.+|
T Consensus        12 ~l~~~qgaV~avryN~-----dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNV-----DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             eecccccceEEEEEcc-----CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            4567888888887654     77899999999999999999999999999999999999988766 69999999999999


Q ss_pred             ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  346 (473)
                      |+.+|+.++.+.+|...|+.+.++++                                    ...+++|+.|.++++||.
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNee------------------------------------sSVv~SgsfD~s~r~wDC  130 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEE------------------------------------SSVVASGSFDSSVRLWDC  130 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCc------------------------------------ceEEEeccccceeEEEEc
Confidence            99999999999999999999998765                                    235899999999999998


Q ss_pred             CCCC-CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc
Q 011978          347 AVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST  425 (473)
Q Consensus       347 ~~~~-~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~  425 (473)
                      +... .|...+....+.|.++.++  +..|++||.||++|.||++.|....-+-+|  ||++++|++|++....++.|++
T Consensus       131 RS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~st  206 (307)
T KOG0316|consen  131 RSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDST  206 (307)
T ss_pred             ccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccce
Confidence            6543 4555666667788888875  567999999999999999999887666555  8999999999999999999999


Q ss_pred             EEEEECCCCceeecccccCCCEEEE--EEeeCCCEEEEEeCCCcEEecc
Q 011978          426 LKVWDIRTQKLKQDLPGHADEVFAV--DWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       426 i~iwd~~~~~~~~~~~~h~~~i~~l--~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +++.|-.++++++.+.||...-+.+  +++.....+++|++||.+.+|.
T Consensus       207 lrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wd  255 (307)
T KOG0316|consen  207 LRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD  255 (307)
T ss_pred             eeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEE
Confidence            9999999999999999998876654  5667778999999999999996

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.3e-31  Score=253.86  Aligned_cols=272  Identities=31%  Similarity=0.529  Sum_probs=242.5

Q ss_pred             CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (473)
Q Consensus       149 ~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~  228 (473)
                      +...+.+..|.  +.++++++.+++|++|+..++......+.+|.+.|.++.+..     .+..+++|+.|.++++||..
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-----~~~~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-----GGDKLVSGSTDKTERVWDCS  279 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-----CCCEEEEEecCCcEEeEecC
Confidence            56678888887  568999999999999999999988877999999999998753     34689999999999999999


Q ss_pred             CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978          229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (473)
Q Consensus       229 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (473)
                      ++.|...+.||...|.|+...+ ..+++|+.|.+|++|++.++..+..+.+|..+|.++....                 
T Consensus       280 sg~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~-----------------  341 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDE-----------------  341 (537)
T ss_pred             CCcEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecC-----------------
Confidence            9999999999999999998653 3678899999999999999999999999999999997653                 


Q ss_pred             CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (473)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd  388 (473)
                                           ..+++|+.|++|++||+. ..+....+.+|...|.++.+.+. ..+++|+.|++|++||
T Consensus       342 ---------------------~~lvsgs~d~~v~VW~~~-~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWd  398 (537)
T KOG0274|consen  342 ---------------------PLLVSGSYDGTVKVWDPR-TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWD  398 (537)
T ss_pred             ---------------------CEEEEEecCceEEEEEhh-hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeec
Confidence                                 368999999999999987 45667788899999999988766 8999999999999999


Q ss_pred             CCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-cCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          389 GTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       389 ~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      ++++ +++.++.+|.+.+.++.+  .+++|++++.|++|++||..+++.++.+.+ |...|..+++.  ...+++++.|+
T Consensus       399 l~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~  474 (537)
T KOG0274|consen  399 LRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDG  474 (537)
T ss_pred             CCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCC
Confidence            9999 999999999998876655  578999999999999999999999999988 66889888876  46889999999


Q ss_pred             cEEecc
Q 011978          467 VLKLWM  472 (473)
Q Consensus       467 ~i~~w~  472 (473)
                      ++++|+
T Consensus       475 ~~~l~d  480 (537)
T KOG0274|consen  475 SVKLWD  480 (537)
T ss_pred             eeEEEe
Confidence            999996

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.1e-31  Score=215.70  Aligned_cols=276  Identities=25%  Similarity=0.416  Sum_probs=226.4

Q ss_pred             EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc-cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (473)
Q Consensus       146 ~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i  224 (473)
                      ..+|.+.|.+++|+.+|..|++|+.|+++.+|+++..+.. .....+|.+.|..+.|.|.+.    ..|++++.|.+|++
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~----d~~atas~dk~ir~   91 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP----DLFATASGDKTIRI   91 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC----cceEEecCCceEEE
Confidence            4578889999999999999999999999999999876432 234678999999999998653    58999999999999


Q ss_pred             EECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCC
Q 011978          225 WDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT  303 (473)
Q Consensus       225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  303 (473)
                      ||++.+++..........+. +.|+|+| +++.+..|..|.+.|.++.+.....+.. ..++.+.+..            
T Consensus        92 wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~e~ne~~w~~------------  157 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-FEVNEISWNN------------  157 (313)
T ss_pred             EEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhccc-ceeeeeeecC------------
Confidence            99999999987765444443 5677766 6889999999999999887766543321 1122222221            


Q ss_pred             CcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc
Q 011978          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS  383 (473)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~  383 (473)
                                              ..+.++.....|++.|-.-. .-++...+..|.....||.|+|+|+|+|+|+.|..
T Consensus       158 ------------------------~nd~Fflt~GlG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~GryfA~GsADAl  212 (313)
T KOG1407|consen  158 ------------------------SNDLFFLTNGLGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL  212 (313)
T ss_pred             ------------------------CCCEEEEecCCceEEEEecc-ccccccccccCCcceEEEEECCCCceEeeccccce
Confidence                                    12344555556777776654 34566778899999999999999999999999999


Q ss_pred             EEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978          384 IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       384 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      +.+||++..-+++.+..+.-+|..+.||.||++||+||.|..|-|=++.+|.....++ +.++.+.|+|+|....||-+.
T Consensus       213 vSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~  291 (313)
T KOG1407|consen  213 VSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYAC  291 (313)
T ss_pred             eeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEe
Confidence            9999999998999999999999999999999999999999999999999999888886 778899999999999999887


Q ss_pred             CC
Q 011978          464 KD  465 (473)
Q Consensus       464 ~D  465 (473)
                      .|
T Consensus       292 dd  293 (313)
T KOG1407|consen  292 DD  293 (313)
T ss_pred             cC
Confidence            65

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-32  Score=225.78  Aligned_cols=323  Identities=23%  Similarity=0.386  Sum_probs=251.4

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      ++...+.||.+.|+.++.......+.+++.|.+.+||.++++.++....+|.+.|.|+.|++.+.++++++.|++-.||.
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            45678899999999999988878899999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCccc--cccCCCcCCcEEEEEeceeccCCCCceEEEe--eCCC-cEEEEECCCCeEEEEecCccccEEEEEecCCC-
Q 011978          179 PQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSA--SKDG-DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-  252 (473)
Q Consensus       179 ~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~--s~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-  252 (473)
                      ..-.-..  .....+|...-. ...+     .....+..+  ..|| +|       ...+..+.||...|.+..|-..| 
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE-~e~s-----De~~~d~d~~~~sD~~ti-------RvPl~~ltgH~~vV~a~dWL~gg~  285 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEE-EEHS-----DEHNRDTDSSEKSDGHTI-------RVPLMRLTGHRAVVSACDWLAGGQ  285 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhh-hhcc-----cccccccccccccCCcee-------eeeeeeeeccccceEehhhhcCcc
Confidence            3211000  001112211000 0000     000111111  1121 22       23566788999999999997665 


Q ss_pred             eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                      .++++++|.+..+||+++|..+..+.+|++....+..+|.                                    ...+
T Consensus       286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt------------------------------------QrLV  329 (481)
T KOG0300|consen  286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT------------------------------------QRLV  329 (481)
T ss_pred             eeeeeeccccceeeeeccCceeccccCcchhccccccCCc------------------------------------ceEE
Confidence            6999999999999999999999999999887776665543                                    2357


Q ss_pred             EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEe
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWS  411 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~s  411 (473)
                      ++++.|.+.++||.+...+....+.||.+.|+++.|.-+.+ +++|+.|.+|++||+++.. ++.+++- ..+++.++.+
T Consensus       330 vTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs  407 (481)
T KOG0300|consen  330 VTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVS  407 (481)
T ss_pred             EEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec-CCccceeEee
Confidence            89999999999999877778889999999999999997655 8899999999999998764 5666663 5689999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCcee----ecccccCCCEEEEEEeeCC--CEEEEEeCCCcEEecc
Q 011978          412 ADSRLLLSGSKDSTLKVWDIRTQKLK----QDLPGHADEVFAVDWSPDG--EKVASGGKDRVLKLWM  472 (473)
Q Consensus       412 p~g~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~h~~~i~~l~~s~d~--~~l~s~~~D~~i~~w~  472 (473)
                      ..+..+|.--++..|++||+...++.    ..-.||...|.+++|..+-  .-|.++|-|..+.=|.
T Consensus       408 ~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  408 KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK  474 (481)
T ss_pred             cCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence            88888888888889999999876542    2446899999999998553  3578999999888775

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1e-31  Score=238.76  Aligned_cols=294  Identities=25%  Similarity=0.413  Sum_probs=226.7

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc----eeEEE-cCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGE  173 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~----~~~~~-~~~~~~v~~l~~s~dg~~l~s~~~dg~  173 (473)
                      .+..++.+|+..|.++++.|.|-++++||.|.+|++||+..-.    ....+ ..-...|.++.|++.|..|++.+....
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            3456788999999999999999999999999999999986421    11111 123346999999999999999999999


Q ss_pred             EEEeeCCCCcccc-----------ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE-EEEe-----
Q 011978          174 LQCWDPQTGKPSG-----------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICL-----  236 (473)
Q Consensus       174 i~iwd~~~~~~~~-----------~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~-~~~~-----  236 (473)
                      .+++|........           ....||...+++..|+|..    ...|+|++.||++||||+...+. +..+     
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~----k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN----KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc----ccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence            9999965432211           2357899999999999954    35899999999999999976432 2222     


Q ss_pred             cCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978          237 SGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (473)
Q Consensus       237 ~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (473)
                      .+....++.++|++++. |++|..||.|.+|+...... +               +.                       
T Consensus       314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v-~---------------p~-----------------------  354 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV-R---------------PV-----------------------  354 (641)
T ss_pred             CCcccCceeeecCCCcchhhhcccCCceeeeecCCccc-c---------------cc-----------------------
Confidence            24455788999999984 77889999999999743110 0               00                       


Q ss_pred             HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccc--ceeEEEECCCCcEEEEEECCCcEEEEeCCCCc
Q 011978          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (473)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~  393 (473)
                                               +            ..-..|..  .|+||+||+||++|++-+.|+++++||++..+
T Consensus       355 -------------------------~------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  355 -------------------------M------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             -------------------------e------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence                                     0            00112333  69999999999999999999999999998753


Q ss_pred             -eEEEeeCC--ccCEEEEEEecCCCEEEEEeC------CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978          394 -FVAVFRGH--VGPVYQISWSADSRLLLSGSK------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       394 -~~~~~~~h--~~~v~~v~~sp~g~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                       ++.+..+-  .-+-+.++|||+.++|++|..      .|++.+||..+....+.+.-....|..+.|+|.=+.|..|+.
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg  477 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG  477 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence             44444432  234577999999999999864      567999999998888877766788999999999999999999


Q ss_pred             CCcEEecc
Q 011978          465 DRVLKLWM  472 (473)
Q Consensus       465 D~~i~~w~  472 (473)
                      ||+++++.
T Consensus       478 dG~~~vyY  485 (641)
T KOG0772|consen  478 DGTAHVYY  485 (641)
T ss_pred             CCceEEEE
Confidence            99999874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-31  Score=242.15  Aligned_cols=270  Identities=28%  Similarity=0.552  Sum_probs=225.2

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK  193 (473)
Q Consensus       114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  193 (473)
                      +.|+ ....||.| ....|++|+..++.....+..++..|+++.|+++|.+|++|..+|.|.|||..+.+........|.
T Consensus       183 ldWs-s~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~  260 (484)
T KOG0305|consen  183 LDWS-SANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA  260 (484)
T ss_pred             hhcc-cCCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence            4566 34455555 445899999988875555555588999999999999999999999999999988776655444499


Q ss_pred             CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC
Q 011978          194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG  271 (473)
Q Consensus       194 ~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~  271 (473)
                      ..|-+++|..       ..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+ ++++|+.|+.+.|||....
T Consensus       261 ~rvg~laW~~-------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~  333 (484)
T KOG0305|consen  261 SRVGSLAWNS-------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP  333 (484)
T ss_pred             ceeEEEeccC-------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence            9999999984       4688999999999999998776555 88999999999999987 5888999999999986321


Q ss_pred             ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978          272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ  351 (473)
Q Consensus       272 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  351 (473)
                                                                                                     .
T Consensus       334 -------------------------------------------------------------------------------~  334 (484)
T KOG0305|consen  334 -------------------------------------------------------------------------------E  334 (484)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           2


Q ss_pred             CeeeecCcccceeEEEECC-CCcEEEEEE--CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE--eCCCcE
Q 011978          352 PKTRMTGHQQLVNHVYFSP-DGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG--SKDSTL  426 (473)
Q Consensus       352 ~~~~~~~~~~~v~~v~~sp-~g~~lasgs--~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~--s~Dg~i  426 (473)
                      +...+..|...|.+++|+| ...+||+|+  .|+.|++||..+|+.+..... .+.|..|.|++..+-|+++  -.++.|
T Consensus       335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i  413 (484)
T KOG0305|consen  335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQI  413 (484)
T ss_pred             ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcE
Confidence            3344556788899999999 677899875  699999999999998877653 4579999999998766664  357789


Q ss_pred             EEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          427 KVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       427 ~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .||+..+.+....+.+|..+|..+++||||..+++|+.|.++++|+
T Consensus       414 ~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  414 TLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             EEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence            9999999999999999999999999999999999999999999996

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.2e-30  Score=204.55  Aligned_cols=292  Identities=25%  Similarity=0.375  Sum_probs=229.9

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC------------CceeE---EEcCCCCCEEEEEECCCCCeEEEEecC
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------------QTPMF---KCTGHKNWVLCIAWSADGKHLVSGSKA  171 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~------------~~~~~---~~~~~~~~v~~l~~s~dg~~l~s~~~d  171 (473)
                      .+..|.+++|+|.|.+.|.|+..++.||.....            ..|..   ..+.|.+.|.|.+|||+|.+|++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            566899999999999999999999999975421            11222   235789999999999999999999999


Q ss_pred             CeEEEeeCC--CCccc--cccCCCcCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCCCeEEEEecCccccEEEE
Q 011978          172 GELQCWDPQ--TGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (473)
Q Consensus       172 g~i~iwd~~--~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  246 (473)
                      ++|++...+  +....  ...+.-|.+.|..++|.... ...+..+++++ .|..|.+=|...+.....+.||.+-|.++
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~-~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal  189 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP-ESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL  189 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCC-CcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence            999886543  32221  12456788999999986532 23344555544 46677777888999999999999998876


Q ss_pred             E-ecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978          247 K-WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (473)
Q Consensus       247 ~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
                      - |+ +-.+++|+.|.+|++||++-..+++.+...-                                            
T Consensus       190 yswn-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~--------------------------------------------  224 (350)
T KOG0641|consen  190 YSWN-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDF--------------------------------------------  224 (350)
T ss_pred             EEec-CcEEEccCCCceEEEEeeeccceeeeccCcc--------------------------------------------
Confidence            4 44 3478899999999999998665554332100                                            


Q ss_pred             CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCE
Q 011978          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV  405 (473)
Q Consensus       326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v  405 (473)
                                 .|+          .       -....|.++++.|.|++|++|-.|....+||++.++.++.|..|+..|
T Consensus       225 -----------~~~----------g-------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadi  276 (350)
T KOG0641|consen  225 -----------HDG----------G-------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI  276 (350)
T ss_pred             -----------cCC----------C-------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccce
Confidence                       000          0       012458899999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          406 YQISWSADSRLLLSGSKDSTLKVWDIRTQ----KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       406 ~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~----~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .+|.|||.-.+|.++|.|..|++-|+...    ..+.....|.+++..+.|+|..--++|.+.|+++.+|.
T Consensus       277 r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa  347 (350)
T KOG0641|consen  277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA  347 (350)
T ss_pred             eEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence            99999999999999999999999998742    12334556889999999999998999999999999995

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-31  Score=232.84  Aligned_cols=276  Identities=27%  Similarity=0.401  Sum_probs=229.6

Q ss_pred             CcccEEEEEECCCCCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978          107 HTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~-lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  185 (473)
                      ....|.+++|+|...+ +|+++ .-.+.||+..+......+......|.++.|-.||++|++|+..|.|+++|..+ +.+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~i  102 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVI  102 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHH
Confidence            3467999999997654 44443 35799999887766655666778899999999999999999999999999544 445


Q ss_pred             cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEEEeecCCeE
Q 011978          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTI  263 (473)
Q Consensus       186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i  263 (473)
                      ...+.+|..++..+.|.|.    +...|++|+.|+.+++||+.+......+.+|...|.|.+|.|-.  .++||+.||.|
T Consensus       103 LR~~~ah~apv~~~~f~~~----d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v  178 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQ----DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV  178 (487)
T ss_pred             HHHHhhccCceeEEEeccc----CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence            5568899999999999885    45689999999999999999998877899999999999998743  68999999999


Q ss_pred             EEEECCCCc-eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978          264 KVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (473)
Q Consensus       264 ~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  342 (473)
                      ++||.+... .+.                                                                   
T Consensus       179 rl~DtR~~~~~v~-------------------------------------------------------------------  191 (487)
T KOG0310|consen  179 RLWDTRSLTSRVV-------------------------------------------------------------------  191 (487)
T ss_pred             EEEEeccCCceeE-------------------------------------------------------------------
Confidence            999987531 111                                                                   


Q ss_pred             EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEe
Q 011978          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGS  421 (473)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s  421 (473)
                                   ...|..+|..+.+-|.|..||+++.. .|++||+.+| +.+..+..|.-.|+|+++..++..|++||
T Consensus       192 -------------elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s  257 (487)
T KOG0310|consen  192 -------------ELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS  257 (487)
T ss_pred             -------------EecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence                         12355678889999999999998754 7999999965 44555556999999999999999999999


Q ss_pred             CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          422 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       422 ~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                      -|+.|++||+.+.+....+. -.++|.+++.+||++.++.|..||.+.+
T Consensus       258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             cccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence            99999999998888887775 4678999999999999999999997653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.4e-30  Score=210.85  Aligned_cols=242  Identities=29%  Similarity=0.546  Sum_probs=200.7

Q ss_pred             eEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978          143 MFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (473)
Q Consensus       143 ~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~  221 (473)
                      ...+++|.+.+..++|+|- |..|++|+.|+.|++|+...+..           .+                        
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-----------~~------------------------   51 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-----------WT------------------------   51 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-----------EE------------------------
Confidence            4567789999999999997 77889999999999998653221           00                        


Q ss_pred             EEEEECCCCeEEEEe-cCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC--ceeeeeeccCceEEEEEecccceeee
Q 011978          222 ARIWDVSLRKCVICL-SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRT  297 (473)
Q Consensus       222 i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~  297 (473)
                                |...+ .+|...|.+++|+|.| +|++|+.|.++.||.-..+  +++..+++|+..|.+++++++     
T Consensus        52 ----------ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s-----  116 (312)
T KOG0645|consen   52 ----------CKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS-----  116 (312)
T ss_pred             ----------EEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC-----
Confidence                      11111 2688899999999987 5889999999999987655  577889999999999999875     


Q ss_pred             ccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC--CCCeeeecCcccceeEEEECCCCcEE
Q 011978          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS--KQPKTRMTGHQQLVNHVYFSPDGQWV  375 (473)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~v~~sp~g~~l  375 (473)
                                                     ...|++++.|+.+-+|+....  ......+.+|...|..+.|+|...+|
T Consensus       117 -------------------------------G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen  117 -------------------------------GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             -------------------------------CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence                                           346999999999999998733  23456788999999999999999999


Q ss_pred             EEEECCCcEEEEeCC---CCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc-ccCCCEEEEE
Q 011978          376 ASASFDKSIKLWNGT---TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-GHADEVFAVD  451 (473)
Q Consensus       376 asgs~d~~v~lwd~~---~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~h~~~i~~l~  451 (473)
                      +++|.|++|++|+-.   .-.++.++.+|.+.|.+++|+|.|..|++++.|++|+||-..+     .++ -|..+++.+.
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~  240 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVP  240 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeee
Confidence            999999999999765   3468899999999999999999999999999999999997653     222 3678999999


Q ss_pred             EeeCCCEEEEEeCCCcEEecc
Q 011978          452 WSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       452 ~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |.  ...|+|++.|+.|+||.
T Consensus       241 W~--~~~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  241 WD--NGVIASGGGDDAIRLFK  259 (312)
T ss_pred             ec--ccceEeccCCCEEEEEE
Confidence            98  45899999999999985

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=6.7e-31  Score=241.42  Aligned_cols=369  Identities=25%  Similarity=0.428  Sum_probs=260.5

Q ss_pred             cccccccCCcccEEEEEECCCCC---eEEEEeCCCeEEEEeCCCCc-----------------eeE----E---------
Q 011978           99 RCSATIAGHTEAVLSVAFSPDGR---QLASGSGDTTVRLWDLNTQT-----------------PMF----K---------  145 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~---~lat~s~d~~i~iwd~~~~~-----------------~~~----~---------  145 (473)
                      .....+.||++.|.+++|...+.   +||++|.|..||||.+.-+.                 +.+    .         
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA  261 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence            34567899999999999987655   78999999999999763111                 111    1         


Q ss_pred             -EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc--c----cCCCcCCcEEEEEeceeccCCCCceEEEeeC
Q 011978          146 -CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG--N----PLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (473)
Q Consensus       146 -~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~--~----~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~  218 (473)
                       +.||+++|.++.|+|++..|++++.|+++.+|...+...+-  .    ...+......+.-|+|     +...+++-+.
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-----n~~~ii~~g~  336 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-----NSNVIIAHGR  336 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-----CCCEEEEecc
Confidence             23899999999999999999999999999999876542110  0    1122333455555665     4467888899


Q ss_pred             CCcEEEEECCC-C--eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC----ceeeeeeccCceEEEEEec
Q 011978          219 DGDARIWDVSL-R--KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG----KLIRELKGHGHWVNSLALS  290 (473)
Q Consensus       219 dg~i~iwd~~~-~--~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~~~~~  290 (473)
                      .|..++|.... .  .....+.||...|..+.|+|.| +|++.+.|.+-|+|-.-..    ..+.+-+.|+..+.++++-
T Consensus       337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v  416 (764)
T KOG1063|consen  337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV  416 (764)
T ss_pred             cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence            99999998222 1  2334567999999999999987 6889999999999864311    2233346688889999877


Q ss_pred             c-cceeeeccccCCCcccCCHHHHHHHHHhhhh-ccc--------------CCCCceEEE-ecCCceE-EE-Ee------
Q 011978          291 T-EYALRTGAFDHTGKQYSSPEEMKKAALERYN-KIK--------------GNAPERLVS-GSDDFTM-FL-WE------  345 (473)
Q Consensus       291 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~l~~-~~~d~~i-~i-wd------  345 (473)
                      + +..+..++.....+.|..|............ ...              +....-+.- -..+|.. .. .+      
T Consensus       417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence            6 5556666655555556555443221111000 000              000000000 0011110 00 00      


Q ss_pred             ------CCCC--------CCCeeeecCcccceeEEEECCCCcEEEEEECCC-----cEEEEeCCCCceEEEeeCCccCEE
Q 011978          346 ------PAVS--------KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-----SIKLWNGTTGKFVAVFRGHVGPVY  406 (473)
Q Consensus       346 ------~~~~--------~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~-----~v~lwd~~~~~~~~~~~~h~~~v~  406 (473)
                            ++..        -....++.||...|.+++.+|+|+++|++....     .|++|+..+....+.+.+|.-.|+
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT  576 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT  576 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE
Confidence                  1000        012345789999999999999999999987543     599999999888889999999999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCce----eecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          407 QISWSADSRLLLSGSKDSTLKVWDIRTQKL----KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .++|||||++|++.|.|.++.+|.......    ...++.|..-|++++|+||+++++|+|.|+++++|.
T Consensus       577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            999999999999999999999998754321    234678999999999999999999999999999995

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4.7e-32  Score=219.77  Aligned_cols=282  Identities=26%  Similarity=0.421  Sum_probs=234.6

Q ss_pred             EEEcCCCCCEEEEEECC---CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC
Q 011978          144 FKCTGHKNWVLCIAWSA---DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (473)
Q Consensus       144 ~~~~~~~~~v~~l~~s~---dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg  220 (473)
                      ..+.+|..+|..++|||   +|-+|++++.|+.-.+-+-++|..+. .+.+|++.|-+...+     .+..+.++++.|-
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig-tfeghkgavw~~~l~-----~na~~aasaaadf   81 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG-TFEGHKGAVWSATLN-----KNATRAASAAADF   81 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE-eeeccCcceeeeecC-----chhhhhhhhcccc
Confidence            45789999999999985   88899999999998888888888776 478999887665433     3445778999999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCc-eeeeeeccCceEEEEEecccceeeec
Q 011978          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTG  298 (473)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~  298 (473)
                      +.++||.-++..+..+ .|...|..++|+.|. .|++|+.+.-+|+||+...+ ....+.+|...|..+.+.-.      
T Consensus        82 takvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e------  154 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE------  154 (334)
T ss_pred             hhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc------
Confidence            9999999998877766 477889999999876 69999999999999987643 34567778877777655321      


Q ss_pred             cccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE
Q 011978          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA  378 (473)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg  378 (473)
                                                    ...++++++|+++++||.+...........  ..|+++.++++|++|.++
T Consensus       155 ------------------------------D~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~ilTia  202 (334)
T KOG0278|consen  155 ------------------------------DKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVSQDGRILTIA  202 (334)
T ss_pred             ------------------------------CceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeeccCCCEEEEe
Confidence                                          335788899999999998877655444333  358999999999988776


Q ss_pred             ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc-cccCCCEEEEEEeeCCC
Q 011978          379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGE  457 (473)
Q Consensus       379 s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~s~d~~  457 (473)
                      . .+.|.+||..+..++..++.. ..|.+.+.+|+...+++|+.|..++.||..+++.+... +||.++|.++.|+|||.
T Consensus       203 ~-gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  203 Y-GSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE  280 (334)
T ss_pred             c-CceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence            4 468999999998888887643 46889999999999999999999999999999988875 89999999999999999


Q ss_pred             EEEEEeCCCcEEecc
Q 011978          458 KVASGGKDRVLKLWM  472 (473)
Q Consensus       458 ~l~s~~~D~~i~~w~  472 (473)
                      ..++||.||+|+||+
T Consensus       281 ~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  281 LYASGSEDGTIRLWQ  295 (334)
T ss_pred             eeeccCCCceEEEEE
Confidence            999999999999996

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.1e-30  Score=252.36  Aligned_cols=288  Identities=25%  Similarity=0.430  Sum_probs=230.4

Q ss_pred             CcccEEEEEECCCCCeEEEEe--CCCeEEEEeCCC------------CceeEEEcCCCCCEEEEEECCCCCeEEEEecCC
Q 011978          107 HTEAVLSVAFSPDGRQLASGS--GDTTVRLWDLNT------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG  172 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s--~d~~i~iwd~~~------------~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg  172 (473)
                      +...|.+++.+|||..+|||+  .|+.++||+...            .+.+.....|.+.|.|+.|+|||++||+|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            345689999999999999999  899999998642            233455678999999999999999999999999


Q ss_pred             eEEEeeCCC----------Ccc-------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE
Q 011978          173 ELQCWDPQT----------GKP-------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC  235 (473)
Q Consensus       173 ~i~iwd~~~----------~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~  235 (473)
                      .|.+|....          |..       ....+.+|...|..+.|+|     +..++++++-|++|.+||..+.+++..
T Consensus        92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-----~~~~lvS~s~DnsViiwn~~tF~~~~v  166 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-----DDSLLVSVSLDNSVIIWNAKTFELLKV  166 (942)
T ss_pred             eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-----CccEEEEecccceEEEEccccceeeee
Confidence            999999763          000       1234678999999999998     456999999999999999999999999


Q ss_pred             ecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHH
Q 011978          236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (473)
Q Consensus       236 ~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (473)
                      +.+|...|-.+.|+|-| ++++-+.|++|++|+..+-...+.+..+..                                
T Consensus       167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~--------------------------------  214 (942)
T KOG0973|consen  167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE--------------------------------  214 (942)
T ss_pred             eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh--------------------------------
Confidence            99999999999999988 577889999999998655333333221100                                


Q ss_pred             HHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC----CCcEEEEeCC
Q 011978          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF----DKSIKLWNGT  390 (473)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~----d~~v~lwd~~  390 (473)
                                                         ..      .-...+..+.|||||++|++.-.    -.++.|.+-.
T Consensus       215 -----------------------------------~~------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~  253 (942)
T KOG0973|consen  215 -----------------------------------ES------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG  253 (942)
T ss_pred             -----------------------------------hC------CCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence                                               00      00123567889999999998743    3478888887


Q ss_pred             CCceEEEeeCCccCEEEEEEecC------C-----------CEEEEEeCCCcEEEEECCCCceeecccc-cCCCEEEEEE
Q 011978          391 TGKFVAVFRGHVGPVYQISWSAD------S-----------RLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDW  452 (473)
Q Consensus       391 ~~~~~~~~~~h~~~v~~v~~sp~------g-----------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~  452 (473)
                      +.+.-..|-||.+++.+++|+|.      .           ..+|+||.|++|-||.....+.+..+.. -...|..++|
T Consensus       254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW  333 (942)
T KOG0973|consen  254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW  333 (942)
T ss_pred             CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE
Confidence            77877889999999999999972      1           1688999999999999876666443221 2357999999


Q ss_pred             eeCCCEEEEEeCCCcEEecc
Q 011978          453 SPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       453 s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +|||-.|..+|.||+|.+..
T Consensus       334 spdG~~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  334 SPDGFSLFACSLDGTVALIH  353 (942)
T ss_pred             cCCCCeEEEEecCCeEEEEE
Confidence            99999999999999998764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1.1e-30  Score=218.23  Aligned_cols=290  Identities=23%  Similarity=0.406  Sum_probs=229.9

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-----------------C-ceeEEEcCCCCCEEEEEECCC
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-----------------Q-TPMFKCTGHKNWVLCIAWSAD  161 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-----------------~-~~~~~~~~~~~~v~~l~~s~d  161 (473)
                      ....+..|..++.+.+|+|||.++|||+.|..|+|.|++.                 + ..+..+-.|...|.++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            3445678999999999999999999999999999999861                 0 123456689999999999999


Q ss_pred             CCeEEEEecCCeEEEeeCCCCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe---c
Q 011978          162 GKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---S  237 (473)
Q Consensus       162 g~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~---~  237 (473)
                      ...|++|+.|++|+++|........ ........+|.++.|+|     .+..++.|..-.++++||+.+-+|...-   .
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-----sGefllvgTdHp~~rlYdv~T~QcfvsanPd~  258 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-----SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD  258 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-----CCceEEEecCCCceeEEeccceeEeeecCccc
Confidence            9999999999999999986432110 01112235688888887     5678888888899999999998887654   3


Q ss_pred             CccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeec-cCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978          238 GHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (473)
Q Consensus       238 ~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (473)
                      +|...|+++.+++.+. .++|+.||.|++||-.++++++++.. |+                                  
T Consensus       259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~----------------------------------  304 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG----------------------------------  304 (430)
T ss_pred             ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC----------------------------------
Confidence            6899999999999884 67999999999999888877765421 11                                  


Q ss_pred             HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE
Q 011978          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (473)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~  395 (473)
                                                                  ...|.+..|..+|+||.+.+.|..+++|.+.+++++
T Consensus       305 --------------------------------------------gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l  340 (430)
T KOG0640|consen  305 --------------------------------------------GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML  340 (430)
T ss_pred             --------------------------------------------CceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence                                                        124677889999999999999999999999999999


Q ss_pred             EEeeCCc--c---CEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecc-cccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978          396 AVFRGHV--G---PVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVL  468 (473)
Q Consensus       396 ~~~~~h~--~---~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~s~d~~~l~s~~~D~~i  468 (473)
                      ..+.|-.  +   .-+...|+....+++.-. ..+.+.-||.++......+ -||.+.+..+.-||.+..+.++|.|..+
T Consensus       341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra  420 (430)
T KOG0640|consen  341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA  420 (430)
T ss_pred             EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence            8887531  1   224455666666666543 3457888999986544332 3799999999999999999999999999


Q ss_pred             Eecc
Q 011978          469 KLWM  472 (473)
Q Consensus       469 ~~w~  472 (473)
                      |+|.
T Consensus       421 RFWy  424 (430)
T KOG0640|consen  421 RFWY  424 (430)
T ss_pred             eeee
Confidence            9995

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.98  E-value=2.5e-30  Score=237.84  Aligned_cols=278  Identities=27%  Similarity=0.458  Sum_probs=235.0

Q ss_pred             eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc-ccCCCcCCcEEE-EEeceeccCCCCceEEEeeCCC
Q 011978          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITG-ISWEPVHLNAPCRRFVSASKDG  220 (473)
Q Consensus       143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~-i~~~~~~~~~~~~~~~s~s~dg  220 (473)
                      ...+.+|...|..+++.+. ..+++++.||++++|+-..+.... ..+.+|.+.|.. +.+.+    .+..++++|+.|.
T Consensus         7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e----~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE----SDKGRLVVGGMDT   81 (745)
T ss_pred             EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc----ccCcceEeecccc
Confidence            3457799999999888754 479999999999999986665444 456778887776 66554    2445799999999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (473)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (473)
                      .+.+|.......++.+.||...|.|++...++.+++|++|.++++|-  .+++...+.+|...|+++..-++        
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e--------  151 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPE--------  151 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEec--chhhhcccCCcchheeeeeecCC--------
Confidence            99999999999999999999999999988888899999999999995  45677779999999998876543        


Q ss_pred             cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC
Q 011978          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (473)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~  380 (473)
                                                   ..+++||.|.+|++|..   ......+.+|.+.|+.+++-|++. +++++.
T Consensus       152 -----------------------------~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~-flScsN  198 (745)
T KOG0301|consen  152 -----------------------------NTYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN  198 (745)
T ss_pred             -----------------------------CcEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC-eEeecC
Confidence                                         25899999999999974   445567889999999999998754 788999


Q ss_pred             CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEE
Q 011978          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA  460 (473)
Q Consensus       381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~  460 (473)
                      ||.|++|+. +|+++..+.+|++.|.+++..+++..+++++.|++++||+..  ++.+.+.-....|+++.+-++|. ++
T Consensus       199 Dg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Iv  274 (745)
T KOG0301|consen  199 DGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IV  274 (745)
T ss_pred             CceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EE
Confidence            999999998 789999999999999999988889999999999999999987  45555543345799999888875 79


Q ss_pred             EEeCCCcEEecc
Q 011978          461 SGGKDRVLKLWM  472 (473)
Q Consensus       461 s~~~D~~i~~w~  472 (473)
                      +|++||.|+||.
T Consensus       275 vg~SDG~VrVfT  286 (745)
T KOG0301|consen  275 VGGSDGRVRVFT  286 (745)
T ss_pred             EeccCceEEEEE
Confidence            999999999995

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=2.5e-31  Score=234.69  Aligned_cols=256  Identities=25%  Similarity=0.447  Sum_probs=206.8

Q ss_pred             EEEeecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCC-CeEEEEec
Q 011978           92 FRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSK  170 (473)
Q Consensus        92 ~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~  170 (473)
                      +.+....+|.+++.||..+|.+++|+++|..+.++|.|+++++||+++|+++..+.. ...+.|+.|.||+ +.+++|+.
T Consensus       242 W~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~s  320 (503)
T KOG0282|consen  242 WNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGS  320 (503)
T ss_pred             EEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecC
Confidence            344556789999999999999999999999999999999999999999998877642 3457899999998 78889999


Q ss_pred             CCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEec
Q 011978          171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWG  249 (473)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~  249 (473)
                      |+.|+.||+++++.+ +.+..|-+.|..+.|.+     .+.+|++.+.|++++||+.+....+.... .+.....|+...
T Consensus       321 d~ki~~wDiRs~kvv-qeYd~hLg~i~~i~F~~-----~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~  394 (503)
T KOG0282|consen  321 DKKIRQWDIRSGKVV-QEYDRHLGAILDITFVD-----EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH  394 (503)
T ss_pred             CCcEEEEeccchHHH-HHHHhhhhheeeeEEcc-----CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecC
Confidence            999999999999844 45677888999999877     56799999999999999998876554332 223345677777


Q ss_pred             CCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978          250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (473)
Q Consensus       250 ~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
                      |++ .+++-+.|+.|.+|.....-                                                        
T Consensus       395 P~~~~~~aQs~dN~i~ifs~~~~~--------------------------------------------------------  418 (503)
T KOG0282|consen  395 PNGKWFAAQSMDNYIAIFSTVPPF--------------------------------------------------------  418 (503)
T ss_pred             CCCCeehhhccCceEEEEeccccc--------------------------------------------------------
Confidence            776 45566788888877642110                                                        


Q ss_pred             CceEEEecCCceEEEEeCCCCCCCeeeecCcc--cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~  406 (473)
                                          ......++.||.  +.-..+.|||||++|++|+.||.+.+||..+-+.+..+++|.+++.
T Consensus       419 --------------------r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci  478 (503)
T KOG0282|consen  419 --------------------RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI  478 (503)
T ss_pred             --------------------ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE
Confidence                                001112233332  2345689999999999999999999999999999999999999999


Q ss_pred             EEEEecCC-CEEEEEeCCCcEEEEE
Q 011978          407 QISWSADS-RLLLSGSKDSTLKVWD  430 (473)
Q Consensus       407 ~v~~sp~g-~~l~s~s~Dg~i~iwd  430 (473)
                      .+.|+|.. ..+|+++.||.|++||
T Consensus       479 ~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  479 GVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEecCCCcceeEecccCceeEecC
Confidence            99999954 5899999999999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=7.9e-30  Score=218.69  Aligned_cols=278  Identities=26%  Similarity=0.466  Sum_probs=220.2

Q ss_pred             HhHHHhcCCCcccEEEEEEEeceeEEEee-cccccccccCCcccEEEEEECCCC---CeEEEEeCCCeEEEEeCCCCce-
Q 011978           68 GSYLEKHKVSVEKVLSIVYQPQAVFRIRP-VNRCSATIAGHTEAVLSVAFSPDG---RQLASGSGDTTVRLWDLNTQTP-  142 (473)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gh~~~V~~~~~sp~~---~~lat~s~d~~i~iwd~~~~~~-  142 (473)
                      ..|+..-+...+-+++-.|..  ..+++. .+++..++.||+++|.++++.-..   ..+++++.|.++++|.++.+.. 
T Consensus       105 dDWVSsv~~~~~~IltgsYDg--~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~  182 (423)
T KOG0313|consen  105 DDWVSSVKGASKWILTGSYDG--TSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK  182 (423)
T ss_pred             hhhhhhhcccCceEEEeecCC--eeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence            345555555656677776754  345554 467888899999999988875443   3599999999999999876643 


Q ss_pred             ---eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc------------------------cccccCCCcCCc
Q 011978          143 ---MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK------------------------PSGNPLSGHKKW  195 (473)
Q Consensus       143 ---~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~------------------------~~~~~~~~~~~~  195 (473)
                         +..+.||+..|-++...++|..+++|+.|.+|.+|+..+..                        .....+.||...
T Consensus       183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~  262 (423)
T KOG0313|consen  183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP  262 (423)
T ss_pred             hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc
Confidence               23456999999999999999999999999999999922100                        011346899999


Q ss_pred             EEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCcee
Q 011978          196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI  274 (473)
Q Consensus       196 v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~  274 (473)
                      |.++.|.+      ...+.+++.|.+|+.||+.++.+...+.+ .....|+...+.. +|++|+.|..|++||-+++.  
T Consensus       263 Vs~V~w~d------~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~--  333 (423)
T KOG0313|consen  263 VSSVVWSD------ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD--  333 (423)
T ss_pred             eeeEEEcC------CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCC--
Confidence            99999987      24789999999999999999988877655 3467888887755 57788888888888876541  


Q ss_pred             eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978          275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (473)
Q Consensus       275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  354 (473)
                                                                                                +.....
T Consensus       334 --------------------------------------------------------------------------gs~v~~  339 (423)
T KOG0313|consen  334 --------------------------------------------------------------------------GSVVSQ  339 (423)
T ss_pred             --------------------------------------------------------------------------CceeEE
Confidence                                                                                      112234


Q ss_pred             eecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978          355 RMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       355 ~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~  431 (473)
                      .+.+|..+|.++.|+|. -..|++|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++..+++|+.|.+|+|+.-
T Consensus       340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence            56789999999999995 4578899999999999999887 899999999999999997 4668999999999999854

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=1.7e-29  Score=230.18  Aligned_cols=243  Identities=42%  Similarity=0.702  Sum_probs=210.2

Q ss_pred             EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (473)
Q Consensus       145 ~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i  224 (473)
                      .+.+|..+|.+++|+|++++|++++.||.+++|+..+++.. .....|...+..+.|.|.     ...+++++.++.+++
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~-----~~~l~~~~~~~~i~i   77 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-RTLKGHTGPVRDVAASAD-----GTYLASGSSDKTIRL   77 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-EEEecCCcceeEEEECCC-----CCEEEEEcCCCeEEE
Confidence            35689999999999999999999999999999999877533 345678888888888773     358999999999999


Q ss_pred             EECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCC
Q 011978          225 WDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT  303 (473)
Q Consensus       225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  303 (473)
                      ||+..++.+..+.+|...+.++.|.+++. +++++.|+.+++||+.+++....+                          
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------------------------  131 (289)
T cd00200          78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL--------------------------  131 (289)
T ss_pred             EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe--------------------------
Confidence            99998888888889998999999998864 555666999999998755433221                          


Q ss_pred             CcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc
Q 011978          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS  383 (473)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~  383 (473)
                                                                           ..|...+.+++|+|++.++++++.|+.
T Consensus       132 -----------------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200         132 -----------------------------------------------------RGHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             -----------------------------------------------------ccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence                                                                 134456889999999999999988999


Q ss_pred             EEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978          384 IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       384 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      |++||.++++.+..+..|...+.++.|+|+++.+++++.|+.|++||++.++....+..|...+.++.|+|++.++++++
T Consensus       159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence            99999999998899999999999999999999999999999999999999888888878888999999999999999998


Q ss_pred             CCCcEEecc
Q 011978          464 KDRVLKLWM  472 (473)
Q Consensus       464 ~D~~i~~w~  472 (473)
                      .|+.+++|+
T Consensus       239 ~~~~i~i~~  247 (289)
T cd00200         239 EDGTIRVWD  247 (289)
T ss_pred             CCCcEEEEE
Confidence            899999996

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=5.1e-30  Score=225.17  Aligned_cols=283  Identities=26%  Similarity=0.422  Sum_probs=225.9

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-----------------EEE-cCCCCCEEEEEECCCCC
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-----------------FKC-TGHKNWVLCIAWSADGK  163 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-----------------~~~-~~~~~~v~~l~~s~dg~  163 (473)
                      ..+..|.-+|.+++++|++.+.++++.|++|.-|++.++...                 ..- +.|...+.+++.|+||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            445779999999999999999999999999999998776422                 001 27888999999999999


Q ss_pred             eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE
Q 011978          164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV  243 (473)
Q Consensus       164 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v  243 (473)
                      +|++|+.|..|.||+.++.+... .+.+|.+.|.+++|..     ....+.+++.|+++++|++.....+.++.||...|
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~-~~~ghr~~V~~L~fr~-----gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v  289 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVK-VFKGHRGAVSSLAFRK-----GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV  289 (479)
T ss_pred             EEEecCCCceEEEecCcccchhh-cccccccceeeeeeec-----CccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence            99999999999999999988764 4789999999999875     33579999999999999999888888899999999


Q ss_pred             EEEEecCCCeEEE-eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978          244 TCVKWGGDGVIYT-GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (473)
Q Consensus       244 ~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (473)
                      ..+....-+.++| |+.|+++++|++..... -.+.++...+.++++-.                               
T Consensus       290 ~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In-------------------------------  337 (479)
T KOG0299|consen  290 LGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIN-------------------------------  337 (479)
T ss_pred             eeechhcccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEec-------------------------------
Confidence            9988776666555 56999999999954322 23456666666666532                               


Q ss_pred             cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC-----------cccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-----------HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (473)
Q Consensus       323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~  391 (473)
                            .+.+++|+++|.|.+|++...+........           +..+|++++..|...++|+|+.+|.|++|-+..
T Consensus       338 ------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  338 ------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED  411 (479)
T ss_pred             ------ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence                  357999999999999997655433322222           234899999999999999999999999998887


Q ss_pred             C----ceEEEeeCCccCEEEEEEecCCCEEEEE-eCCCcEEEE
Q 011978          392 G----KFVAVFRGHVGPVYQISWSADSRLLLSG-SKDSTLKVW  429 (473)
Q Consensus       392 ~----~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s~Dg~i~iw  429 (473)
                      +    .++..+. -.+.|++++|+++|+.|++| +....+--|
T Consensus       412 g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  412 GLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             Cccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence            6    3445554 56899999999999966554 455444334

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=3.8e-29  Score=238.59  Aligned_cols=267  Identities=17%  Similarity=0.272  Sum_probs=203.1

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-------------EEEcCCCCCEEEEEECC-CCCeEEEEecCC
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-------------FKCTGHKNWVLCIAWSA-DGKHLVSGSKAG  172 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-------------~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg  172 (473)
                      |-..|.....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            4456666777888777888888777788876543221             13568999999999999 889999999999


Q ss_pred             eEEEeeCCCCcc------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEE
Q 011978          173 ELQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (473)
Q Consensus       173 ~i~iwd~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  246 (473)
                      +|++||+.++..      ....+.+|...|.++.|+|..    ...+++++.|++|++||+.+++.+..+.+|...|.++
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~----~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl  174 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA----MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL  174 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC----CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence            999999876531      123467899999999999842    2479999999999999999999999999999999999


Q ss_pred             EecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978          247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (473)
Q Consensus       247 ~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
                      +|++++ .|++++.|++|++||+++++.+..+.+|...                                          
T Consensus       175 a~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~------------------------------------------  212 (493)
T PTZ00421        175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA------------------------------------------  212 (493)
T ss_pred             EEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC------------------------------------------
Confidence            999988 5889999999999999988766554433210                                          


Q ss_pred             CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE----CCCcEEEEeCCCCc-eEEEeeC
Q 011978          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS----FDKSIKLWNGTTGK-FVAVFRG  400 (473)
Q Consensus       326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs----~d~~v~lwd~~~~~-~~~~~~~  400 (473)
                                                          ....+.|.+++..+++++    .|+.|++||+++.. .+.....
T Consensus       213 ------------------------------------~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~  256 (493)
T PTZ00421        213 ------------------------------------KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL  256 (493)
T ss_pred             ------------------------------------cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence                                                122345667666666554    47899999998754 3444433


Q ss_pred             C-ccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccc-cCCCEEEEEEeeC
Q 011978          401 H-VGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPD  455 (473)
Q Consensus       401 h-~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~d  455 (473)
                      + ...+....|++++++|++++ .|+.|++||+..++....... +...+.+++|.|.
T Consensus       257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            3 34566778999999999887 499999999998876554432 3445667777774

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.9e-30  Score=243.32  Aligned_cols=282  Identities=20%  Similarity=0.358  Sum_probs=204.8

Q ss_pred             CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEE--------eceeccCC-----CCceEE
Q 011978          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS--------WEPVHLNA-----PCRRFV  214 (473)
Q Consensus       148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~--------~~~~~~~~-----~~~~~~  214 (473)
                      .|.+.|+++.||+||++||+|+.|+.|+||.+...+....    +...-.++.        ..|.....     .....-
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~----~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRV----AEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcc----cccccchhhhhhhhccccCccccccccccccccccc
Confidence            7999999999999999999999999999999865322110    000000000        00100000     000001


Q ss_pred             EeeCCCcEEEEECC----CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978          215 SASKDGDARIWDVS----LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (473)
Q Consensus       215 s~s~dg~i~iwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  290 (473)
                      .+..... .+.+..    ..+.+..+.||.+.|..+.|+.++.|++++.|.++|||++....+++.| .|...|+|++|+
T Consensus       341 ~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFN  418 (712)
T ss_pred             cccCCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEec
Confidence            1111112 111111    1345567889999999999999999999999999999999988888876 478889999998


Q ss_pred             ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC
Q 011978          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp  370 (473)
                      |.                                   ....+++|+-|+.++||.+...+  ......-.+.|++++|+|
T Consensus       419 Pv-----------------------------------DDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~P  461 (712)
T KOG0283|consen  419 PV-----------------------------------DDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSP  461 (712)
T ss_pred             cc-----------------------------------CCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEecc
Confidence            74                                   24569999999999999975432  222222346799999999


Q ss_pred             CCcEEEEEECCCcEEEEeCCCCceEEEeeC--C------ccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeeccc
Q 011978          371 DGQWVASASFDKSIKLWNGTTGKFVAVFRG--H------VGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLP  441 (473)
Q Consensus       371 ~g~~lasgs~d~~v~lwd~~~~~~~~~~~~--h------~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~~~~  441 (473)
                      ||++.+.|+.+|.+++|+....++...+.-  |      ...|+.+.|.|.. ..+++.+.|..|+|||.+...++..++
T Consensus       462 dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK  541 (712)
T KOG0283|consen  462 DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK  541 (712)
T ss_pred             CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence            999999999999999999887766543321  1      2279999999844 356677889999999998888888888


Q ss_pred             ccCC--CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          442 GHAD--EVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       442 ~h~~--~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+..  .=....|+.||++|++++.|..|.+|.
T Consensus       542 G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  542 GFRNTSSQISASFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             ccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence            7543  224568999999999999999999996

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-30  Score=244.84  Aligned_cols=252  Identities=26%  Similarity=0.454  Sum_probs=201.6

Q ss_pred             cccc-CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC--------------------------------C--------
Q 011978          102 ATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--------------------------------Q--------  140 (473)
Q Consensus       102 ~~~~-gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~--------------------------------~--------  140 (473)
                      +.+. +|.+.|+++.||+||++||+|+.|+.|+||.+..                                .        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3445 8999999999999999999999999999997633                                0        


Q ss_pred             --------------------ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEE
Q 011978          141 --------------------TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS  200 (473)
Q Consensus       141 --------------------~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~  200 (473)
                                          +|+..+.+|.+.|..|.||.+ .+|++++.|.+|++|++....++.  ...|...|+++.
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~--~F~HndfVTcVa  416 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLK--VFSHNDFVTCVA  416 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceee--EEecCCeeEEEE
Confidence                                123346789999999999976 589999999999999998777664  467999999999


Q ss_pred             eceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeec
Q 011978          201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       201 ~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~  279 (473)
                      |+|.    +.++|++|+-||.+|||++...+.+....-+ .-|++++|.|||. .+.|+.+|.+++|+....+.......
T Consensus       417 FnPv----DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  417 FNPV----DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             eccc----CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence            9996    4579999999999999999887766544433 6799999999995 77899999999999877665443221


Q ss_pred             cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (473)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  359 (473)
                      +.                                                                 ..    .++. .|
T Consensus       492 ~~-----------------------------------------------------------------~~----~Kk~-~~  501 (712)
T KOG0283|consen  492 RL-----------------------------------------------------------------HN----KKKK-QG  501 (712)
T ss_pred             ee-----------------------------------------------------------------cc----Cccc-cC
Confidence            00                                                                 00    0111 12


Q ss_pred             ccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCceEEEeeCCcc--CEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          360 QQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVG--PVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       360 ~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~--~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      . .|+.+.|.|. ...++..+.|..|||+|.++..++..|+|+..  .=....|+.||++|++++.|..|+||+..
T Consensus       502 ~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  502 K-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             c-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            2 6899999874 33566778899999999998899999987643  33567899999999999999999999973

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=1.8e-29  Score=232.18  Aligned_cols=279  Identities=25%  Similarity=0.434  Sum_probs=232.6

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce--eEEEcCCCCCEEE-EEECC-CCCeEEEEecCCeEE
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLC-IAWSA-DGKHLVSGSKAGELQ  175 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~-l~~s~-dg~~l~s~~~dg~i~  175 (473)
                      ....+.||...|..+++.+. ..++++|.||++++|+-..+.-  ...+.+|.+.|.+ +++-+ ++..|++|+.|..|.
T Consensus         6 ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII   84 (745)
T ss_pred             eEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence            34578899999998887654 4789999999999999755442  3446678888877 88775 555799999999999


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEE
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY  255 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~  255 (473)
                      +|...+..+.. .+.+|...|.+++...     + ..+++||+|.++++|-.  +++...+.+|...|+++..-+++.++
T Consensus        85 v~~~~~~~P~~-~LkgH~snVC~ls~~~-----~-~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~v  155 (745)
T KOG0301|consen   85 VFKLSQAEPLY-TLKGHKSNVCSLSIGE-----D-GTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYV  155 (745)
T ss_pred             EEecCCCCchh-hhhccccceeeeecCC-----c-CceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEE
Confidence            99998877654 6889999999886322     2 34899999999999964  56677799999999999999999999


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      ||+.|.+||+|.-  ++.++++.+|...|+.+++-++                                     ..++++
T Consensus       156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-------------------------------------~~flSc  196 (745)
T KOG0301|consen  156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-------------------------------------SHFLSC  196 (745)
T ss_pred             eccCcceeeeccC--CchhhhhccchhheeeeEEecC-------------------------------------CCeEee
Confidence            9999999999975  7889999999999999987653                                     258999


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR  415 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~  415 (473)
                      +.||.|++|+..  .....++.+|...+.+++..+++..+++++.|+++++|+..  ++.+.+.-..-.|+++.+-++|.
T Consensus       197 sNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD  272 (745)
T KOG0301|consen  197 SNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD  272 (745)
T ss_pred             cCCceEEEEecc--CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC
Confidence            999999999973  34567889999999999988899999999999999999866  77777765555899999988886


Q ss_pred             EEEEEeCCCcEEEEECC
Q 011978          416 LLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       416 ~l~s~s~Dg~i~iwd~~  432 (473)
                       +++|+.||.||||...
T Consensus       273 -Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  273 -IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             -EEEeccCceEEEEEec
Confidence             6678889999999765

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.6e-30  Score=223.87  Aligned_cols=249  Identities=25%  Similarity=0.446  Sum_probs=196.8

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      ...++.||..+|..+.||||.++|++|+.|..+++||+.++....... ++...+.|++|.|||..+++|+.|+++..||
T Consensus       261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd  340 (519)
T KOG0293|consen  261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD  340 (519)
T ss_pred             eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence            456789999999999999999999999999999999999998765543 4578899999999999999999999999999


Q ss_pred             CCCCccccccCCC-cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEE
Q 011978          179 PQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT  256 (473)
Q Consensus       179 ~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s  256 (473)
                      .+.... . .-.+ ....|.+++..     .++.++++...|..+++++.++........ ....|++.+.+.++. +++
T Consensus       341 lDgn~~-~-~W~gvr~~~v~dlait-----~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~Lv  412 (519)
T KOG0293|consen  341 LDGNIL-G-NWEGVRDPKVHDLAIT-----YDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALV  412 (519)
T ss_pred             CCcchh-h-cccccccceeEEEEEc-----CCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEE
Confidence            864321 1 0111 11335555543     477889999999999999988766553333 335789999999885 556


Q ss_pred             eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      .-.+..+.+||++..+.++.+.+|...                                               .+    
T Consensus       413 nL~~qei~LWDl~e~~lv~kY~Ghkq~-----------------------------------------------~f----  441 (519)
T KOG0293|consen  413 NLQDQEIHLWDLEENKLVRKYFGHKQG-----------------------------------------------HF----  441 (519)
T ss_pred             EcccCeeEEeecchhhHHHHhhccccc-----------------------------------------------ce----
Confidence            778999999999987777666655321                                               00    


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecC-C
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD-S  414 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-g  414 (473)
                                                +-.-+|-- +..++|+||.|+.|+||+..+|+++.++.||...|++|+|+|. .
T Consensus       442 --------------------------iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p  495 (519)
T KOG0293|consen  442 --------------------------IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADP  495 (519)
T ss_pred             --------------------------EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCH
Confidence                                      11112322 4578999999999999999999999999999999999999994 5


Q ss_pred             CEEEEEeCCCcEEEEECCC
Q 011978          415 RLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd~~~  433 (473)
                      .++|+||+||+|+||....
T Consensus       496 ~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  496 EMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             HHhhccCCCCeEEEecCCc
Confidence            6899999999999997754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.2e-30  Score=242.86  Aligned_cols=267  Identities=23%  Similarity=0.402  Sum_probs=221.0

Q ss_pred             cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEE
Q 011978          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD  226 (473)
Q Consensus       147 ~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd  226 (473)
                      ...+..|..++|+|....++++--+|.|++||.+-+..+. .+..|.++|.++.|+|.     ...|++||.|-.|++|+
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~-rFdeHdGpVRgv~FH~~-----qplFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID-RFDEHDGPVRGVDFHPT-----QPLFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh-hhhccCCccceeeecCC-----CCeEEecCCccEEEEEe
Confidence            3446678999999999999999999999999998776543 47889999999999984     45899999999999999


Q ss_pred             CCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCc
Q 011978          227 VSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (473)
Q Consensus       227 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (473)
                      ...++|+.++.||...|..+.|+++- .|++++.|.+|++|+..+++++..+.+|.+.|.|..|+|.             
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt-------------  146 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT-------------  146 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc-------------
Confidence            99999999999999999999999875 6999999999999999999999999999999999988874             


Q ss_pred             ccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE---EEEECCC
Q 011978          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV---ASASFDK  382 (473)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l---asgs~d~  382 (473)
                                             .+.++++|-|.++++||+...+.......+-.+.       +.+..+   .-|+.|-
T Consensus       147 -----------------------EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~-------~~~~~~~~dLfg~~Da  196 (1202)
T KOG0292|consen  147 -----------------------EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ-------MRGQQGNSDLFGQTDA  196 (1202)
T ss_pred             -----------------------cceEEEecccceEEEEeecchhccCCCCCCchhh-------hhccccchhhcCCcCe
Confidence                                   3579999999999999986433211110000000       011111   1122222


Q ss_pred             cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eecccccCCCEEEEEEeeCCCEEE
Q 011978          383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL--KQDLPGHADEVFAVDWSPDGEKVA  460 (473)
Q Consensus       383 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~s~d~~~l~  460 (473)
                                -...+++||...|+-++|+|.-..++||++|..|++|.+...+.  ..++.||...|.++-|+|..+.++
T Consensus       197 ----------VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl  266 (1202)
T KOG0292|consen  197 ----------VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL  266 (1202)
T ss_pred             ----------eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence                      22357899999999999999999999999999999999976553  568899999999999999999999


Q ss_pred             EEeCCCcEEecc
Q 011978          461 SGGKDRVLKLWM  472 (473)
Q Consensus       461 s~~~D~~i~~w~  472 (473)
                      |.|+|++|++|+
T Consensus       267 SnsEDksirVwD  278 (1202)
T KOG0292|consen  267 SNSEDKSIRVWD  278 (1202)
T ss_pred             ecCCCccEEEEe
Confidence            999999999997

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.4e-29  Score=229.54  Aligned_cols=323  Identities=16%  Similarity=0.307  Sum_probs=252.9

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee---EEEcCCCCCEEEEEECC-C----------CCeEEEEecCCeEEE
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSA-D----------GKHLVSGSKAGELQC  176 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~---~~~~~~~~~v~~l~~s~-d----------g~~l~s~~~dg~i~i  176 (473)
                      -.++.|+|..++|.....|..++|||+..-..+   .....|...|+.+.--| +          ...+++++.|++|++
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            456789999999999999999999999764332   33456777777776544 1          235889999999999


Q ss_pred             eeCCCCc---cc-cccC--------------------------------CCcCCcEEEEEeceeccCCCCceEEEeeCCC
Q 011978          177 WDPQTGK---PS-GNPL--------------------------------SGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (473)
Q Consensus       177 wd~~~~~---~~-~~~~--------------------------------~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg  220 (473)
                      ||+..+.   .. ..++                                -+....+.+++.     ++++..+++|...|
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v-----Sp~gqhLAsGDr~G  481 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV-----SPDGQHLASGDRGG  481 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE-----CCCcceecccCccC
Confidence            9987521   10 0000                                011122334444     44678899999999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEecCC----CeEEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEeccccee
Q 011978          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYAL  295 (473)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~  295 (473)
                      ++++||+..-..+..+..|...|.|+.|+..    .+|++++.|+-|.+||+... .++.++.+|...|.++.|....  
T Consensus       482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g--  559 (1080)
T KOG1408|consen  482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG--  559 (1080)
T ss_pred             ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC--
Confidence            9999999988888888999999999999843    36889999999999998654 5667889999999998875431  


Q ss_pred             eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC----cccceeEEEECCC
Q 011978          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG----HQQLVNHVYFSPD  371 (473)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~v~~sp~  371 (473)
                                                      ...++++++.|+.+.+--..........+.+    ....+..+++.|.
T Consensus       560 --------------------------------ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~  607 (1080)
T KOG1408|consen  560 --------------------------------LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT  607 (1080)
T ss_pred             --------------------------------CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence                                            1235777888877654322211111111211    2345788999999


Q ss_pred             CcEEEEEECCCcEEEEeCCCCceEEEeeC---CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEE
Q 011978          372 GQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF  448 (473)
Q Consensus       372 g~~lasgs~d~~v~lwd~~~~~~~~~~~~---h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~  448 (473)
                      .+++++++.|+.|+|||+++|+....|++   |.+....|...|.|.|||+...|.++-++|..++++..++.||...|+
T Consensus       608 ~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VT  687 (1080)
T KOG1408|consen  608 SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVT  687 (1080)
T ss_pred             cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhee
Confidence            99999999999999999999999999976   667788999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEecc
Q 011978          449 AVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       449 ~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .+.|++|-+.|+|++.||.|.||.
T Consensus       688 G~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  688 GVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             eeeecccchhheeecCCceEEEEE
Confidence            999999999999999999999996

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.1e-28  Score=206.49  Aligned_cols=270  Identities=20%  Similarity=0.311  Sum_probs=210.2

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~  186 (473)
                      ..+.|.++.|+|.+..|+.++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++... 
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-   88 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-   88 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence            3678999999999999999999999999999877443333 4889999999986 468999999999999999988653 


Q ss_pred             ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEE
Q 011978          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW  266 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w  266 (473)
                       .+..|...|.++.+.+.     ...+++||+|++|++||.+.......+.. ...|.|+...++ .|+.|+.|..+.+|
T Consensus        89 -~igth~~~i~ci~~~~~-----~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~-~LvVg~~~r~v~iy  160 (323)
T KOG1036|consen   89 -QIGTHDEGIRCIEYSYE-----VGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGN-RLVVGTSDRKVLIY  160 (323)
T ss_pred             -eeccCCCceEEEEeecc-----CCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCC-EEEEeecCceEEEE
Confidence             46779999999988753     35789999999999999886444333322 236777766543 66777788888888


Q ss_pred             ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  346 (473)
                      |+++-....+                                                                      
T Consensus       161 DLRn~~~~~q----------------------------------------------------------------------  170 (323)
T KOG1036|consen  161 DLRNLDEPFQ----------------------------------------------------------------------  170 (323)
T ss_pred             Ecccccchhh----------------------------------------------------------------------
Confidence            8765321100                                                                      


Q ss_pred             CCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC----ceEEEeeCCc---------cCEEEEEEecC
Q 011978          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG----KFVAVFRGHV---------GPVYQISWSAD  413 (473)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~----~~~~~~~~h~---------~~v~~v~~sp~  413 (473)
                             .+...-...++||++-|++.-.+.+|-||.|.+=.+...    +.-..|+.|.         -||++++|+|-
T Consensus       171 -------~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  171 -------RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             -------hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence                   001112245889999999988999999998876544433    2335566664         37999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978          414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       414 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      -+.||||+.||.|.+||+...|.+..+..-...|..++|+.||..||.++.
T Consensus       244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            889999999999999999999988888877788999999999999998875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-28  Score=230.93  Aligned_cols=362  Identities=22%  Similarity=0.346  Sum_probs=254.9

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE-EEEecCCeEEE
Q 011978           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQC  176 (473)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~s~~~dg~i~i  176 (473)
                      ++.+.++.++.+.|+++.-+|-=+.+|.|..+|+|.|++++.++.+..++...+.|++++|..||..+ ++|+..|.+.+
T Consensus       192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~  271 (910)
T KOG1539|consen  192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF  271 (910)
T ss_pred             CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence            45677889999999999999999999999999999999999999988888656899999999999755 56667799999


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC--C--eEEEEecCccccEEEEEecC-C
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL--R--KCVICLSGHTLAVTCVKWGG-D  251 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~--~--~~~~~~~~h~~~v~~~~~~~-~  251 (473)
                      ||++..+........|.+.+....|.|     .+..+++.+.|..+++|=..+  +  +.+..-.||..+..|+.|-. +
T Consensus       272 wDLe~kkl~~v~~nah~~sv~~~~fl~-----~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~  346 (910)
T KOG1539|consen  272 WDLEKKKLINVTRNAHYGSVTGATFLP-----GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ  346 (910)
T ss_pred             EEcCCCeeeeeeeccccCCcccceecC-----CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence            999988877777788988888888776     345788889999888884432  2  23334456666666666642 3


Q ss_pred             C-eEEEeecCCeEEEEEC--------------------------------------------------------------
Q 011978          252 G-VIYTGSQDCTIKVWET--------------------------------------------------------------  268 (473)
Q Consensus       252 ~-~l~s~~~d~~i~~wd~--------------------------------------------------------------  268 (473)
                      + .+.+++.|++.+.+++                                                              
T Consensus       347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence            3 3555566555554432                                                              


Q ss_pred             ---CCCcee-eeeecc-------CceEEEEEecccceee---eccccC----CCc---cc-CCHHHHHHHHHhhhhc-cc
Q 011978          269 ---TQGKLI-RELKGH-------GHWVNSLALSTEYALR---TGAFDH----TGK---QY-SSPEEMKKAALERYNK-IK  325 (473)
Q Consensus       269 ---~~~~~~-~~~~~~-------~~~v~~~~~~~~~~~~---~~~~~~----~~~---~~-~~~~~~~~~~~~~~~~-~~  325 (473)
                         ++...- ..+...       ....-++...-++.+.   .+..+.    .+.   .| .++.     ....... ..
T Consensus       427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a-----h~~~V~gla~  501 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA-----HKGEVTGLAV  501 (910)
T ss_pred             EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc-----ccCceeEEEe
Confidence               211110 001000       1122333333222221   111110    000   00 0000     0000000 01


Q ss_pred             CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCE
Q 011978          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV  405 (473)
Q Consensus       326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v  405 (473)
                      ......+++++.+|.+..||..........-.  ...+.++.++-....+|.+..|-.|+++|..+.+.++.|.||.+.|
T Consensus       502 D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l--~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri  579 (910)
T KOG1539|consen  502 DGTNRLLVSAGADGILKFWDFKKKVLKKSLRL--GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI  579 (910)
T ss_pred             cCCCceEEEccCcceEEEEecCCcceeeeecc--CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce
Confidence            12234689999999999999754432111112  2356777888888899999999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCC-CcEEecc
Q 011978          406 YQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD-RVLKLWM  472 (473)
Q Consensus       406 ~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~~w~  472 (473)
                      ++++|||||++|++++.|++|++||+.++..+-.+. -..+...+.|||+|.+||++..| .-|.+|.
T Consensus       580 td~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  580 TDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            999999999999999999999999999998875553 35678899999999999999999 6788884

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=5.1e-28  Score=231.78  Aligned_cols=251  Identities=18%  Similarity=0.300  Sum_probs=192.0

Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEeeCCCCccc-------cccCCCcCCcEE
Q 011978          126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPS-------GNPLSGHKKWIT  197 (473)
Q Consensus       126 ~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~v~  197 (473)
                      |+.++.|++|+.....++..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+.++...       ...+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            556889999998887788889999999999999996 789999999999999999764321       123578999999


Q ss_pred             EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeee
Q 011978          198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRE  276 (473)
Q Consensus       198 ~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~  276 (473)
                      ++.|+|..    ...+++++.|++|++||+++++.+..+. |...|.+++|+++|. |++++.|+.|++||.++++.+..
T Consensus       130 sVaf~P~g----~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t  204 (568)
T PTZ00420        130 IIDWNPMN----YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS  204 (568)
T ss_pred             EEEECCCC----CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            99999842    2356799999999999999988777665 557899999999884 66788999999999999887776


Q ss_pred             eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee
Q 011978          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM  356 (473)
Q Consensus       277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  356 (473)
                      +.+|...+...                                                                     
T Consensus       205 l~gH~g~~~s~---------------------------------------------------------------------  215 (568)
T PTZ00420        205 FHIHDGGKNTK---------------------------------------------------------------------  215 (568)
T ss_pred             EecccCCceeE---------------------------------------------------------------------
Confidence            66554321110                                                                     


Q ss_pred             cCcccceeEEEECCCCcEEEEEECCC----cEEEEeCCC-CceEEEee--CCccCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011978          357 TGHQQLVNHVYFSPDGQWVASASFDK----SIKLWNGTT-GKFVAVFR--GHVGPVYQISWSADSRLLLSGSKDSTLKVW  429 (473)
Q Consensus       357 ~~~~~~v~~v~~sp~g~~lasgs~d~----~v~lwd~~~-~~~~~~~~--~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iw  429 (473)
                           .+....|++++.+|++++.|+    .|+|||++. ++++..+.  .+.+.+...-..++|.++++|+.|++|++|
T Consensus       216 -----~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~  290 (568)
T PTZ00420        216 -----NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYY  290 (568)
T ss_pred             -----EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEE
Confidence                 122345778999999988774    799999985 55555543  334444444445678999999999999999


Q ss_pred             ECCCCce--eecccccCCCEEEEEEeeCC
Q 011978          430 DIRTQKL--KQDLPGHADEVFAVDWSPDG  456 (473)
Q Consensus       430 d~~~~~~--~~~~~~h~~~i~~l~~s~d~  456 (473)
                      ++..+..  +.... +..++.+++|.|+.
T Consensus       291 e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        291 QHSLGSIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EccCCcEEeecccc-cCCCccceEEcccc
Confidence            9987643  22222 45677889999863

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.7e-30  Score=206.32  Aligned_cols=256  Identities=23%  Similarity=0.394  Sum_probs=184.7

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCCEEEEEECC--CCCeEEEEecCCeEEEeeC
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iwd~  179 (473)
                      .+|.+.|..+.+..-|++|||++.|++|+|+.+....   .+..+.+|+++|..++|..  -|..|+++++||+|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            5799999999999999999999999999999987643   5677899999999999975  7999999999999999998


Q ss_pred             CCCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC---eEE
Q 011978          180 QTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIY  255 (473)
Q Consensus       180 ~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~  255 (473)
                      ++|+-.. ....                                               .|...|++++|.|.+   .|+
T Consensus        88 ~~g~w~k~~e~~-----------------------------------------------~h~~SVNsV~wapheygl~La  120 (299)
T KOG1332|consen   88 ENGRWTKAYEHA-----------------------------------------------AHSASVNSVAWAPHEYGLLLA  120 (299)
T ss_pred             CCCchhhhhhhh-----------------------------------------------hhcccceeecccccccceEEE
Confidence            7774221 1122                                               355556666665543   477


Q ss_pred             EeecCCeEEEEECCCC-ce--eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          256 TGSQDCTIKVWETTQG-KL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~-~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                      +++.||.|.+.+.... ..  .+....|..-|+++...|...                                      
T Consensus       121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~--------------------------------------  162 (299)
T KOG1332|consen  121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA--------------------------------------  162 (299)
T ss_pred             EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC--------------------------------------
Confidence            8888998888776543 11  111233444444444333200                                      


Q ss_pred             EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc--eEEEeeCCccCEEEEEE
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQISW  410 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~  410 (473)
                           +|.+               ..|..       ...-+.|++|+.|..|+||+..+++  ....+++|.+.|.+|+|
T Consensus       163 -----~g~~---------------~~~~~-------~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw  215 (299)
T KOG1332|consen  163 -----PGSL---------------VDQGP-------AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW  215 (299)
T ss_pred             -----Cccc---------------cccCc-------ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh
Confidence                 0000               00000       0001569999999999999988764  34568999999999999


Q ss_pred             ecCC----CEEEEEeCCCcEEEEECCCC-c--eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          411 SADS----RLLLSGSKDSTLKVWDIRTQ-K--LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       411 sp~g----~~l~s~s~Dg~i~iwd~~~~-~--~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .|.-    .+||++|.||+|.||..+.. +  ....+..-.+.++.++||+.|+.|+.++.|+.+.+|.
T Consensus       216 aP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  216 APSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             ccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            9964    47999999999999977521 1  1222333456899999999999999999999999995

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-28  Score=226.80  Aligned_cols=241  Identities=31%  Similarity=0.532  Sum_probs=211.5

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  185 (473)
                      +...|+++.|+++|.+||+|..+|.|.|||....+.+..+.+ |...|.+++|+  +..+.+|+.|+.|..+|++..+..
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence            378999999999999999999999999999998888777777 99999999998  678999999999999999887765


Q ss_pred             cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC--CCeEEEe--ecCC
Q 011978          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG--DGVIYTG--SQDC  261 (473)
Q Consensus       186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~--~~d~  261 (473)
                      ...+.+|...|.++.|++     +..++++|+.|+.+.|||.........+..|.++|..++|+|  .++|++|  +.|+
T Consensus       294 ~~~~~~H~qeVCgLkws~-----d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  294 VSTLQGHRQEVCGLKWSP-----DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             hhhhhcccceeeeeEECC-----CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence            556889999999999987     567999999999999999988888889999999999999997  4678875  5899


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      +|++||..+|..+..+.                                                       +       
T Consensus       369 ~i~fwn~~~g~~i~~vd-------------------------------------------------------t-------  386 (484)
T KOG0305|consen  369 CIKFWNTNTGARIDSVD-------------------------------------------------------T-------  386 (484)
T ss_pred             EEEEEEcCCCcEecccc-------------------------------------------------------c-------
Confidence            99999998877654321                                                       0       


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE--ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEE
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS  419 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg--s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s  419 (473)
                                        ...|.+|.|++..+-|+++  -.++.|.||++.+.+.+..+.+|...|..+++||||..+++
T Consensus       387 ------------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t  448 (484)
T KOG0305|consen  387 ------------------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT  448 (484)
T ss_pred             ------------------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence                              1357889999988666654  34678999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEECCCC
Q 011978          420 GSKDSTLKVWDIRTQ  434 (473)
Q Consensus       420 ~s~Dg~i~iwd~~~~  434 (473)
                      |+.|.++++|++-..
T Consensus       449 ~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  449 GAADETLRFWNLFDE  463 (484)
T ss_pred             ecccCcEEeccccCC
Confidence            999999999998764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.7e-28  Score=203.39  Aligned_cols=270  Identities=18%  Similarity=0.266  Sum_probs=214.6

Q ss_pred             CCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCC-CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEE
Q 011978          148 GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (473)
Q Consensus       148 ~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iw  225 (473)
                      ..++.|.+|+||| ....+++++.||+|++|+++. |.........|.++|.++.|+.     ++..+.+|+.|+.+++|
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-----dgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-----DGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-----CCceEEeeccCCceEEE
Confidence            3467899999999 455666899999999999987 4555566778999999999976     56789999999999999


Q ss_pred             ECCCCeEEEEecCccccEEEEEecCCC---eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978          226 DVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       226 d~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                      |+.++ .+.....|..+|.++.|-+..   .|+||++|++||.||.+....+.++...+ .+.++.+-            
T Consensus       100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~------------  165 (347)
T KOG0647|consen  100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL------------  165 (347)
T ss_pred             EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc------------
Confidence            99998 455677899999999996532   68999999999999999888777665432 22222211            


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC-cccceeEEEECCCCcEEEEEECC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFD  381 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d  381 (473)
                                                ...++.+..++.|.++.+.......+++.. -.-.++||+..+|....|.|+-.
T Consensus       166 --------------------------~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE  219 (347)
T KOG0647|consen  166 --------------------------YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE  219 (347)
T ss_pred             --------------------------CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence                                      124677788899999998655433333222 23458999999999888999999


Q ss_pred             CcEEEEeCCCC--ceEEEeeCCcc---------CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEE
Q 011978          382 KSIKLWNGTTG--KFVAVFRGHVG---------PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAV  450 (473)
Q Consensus       382 ~~v~lwd~~~~--~~~~~~~~h~~---------~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l  450 (473)
                      |.+-+..+..+  +.-.+|+.|+.         .|++++|+|.-..|++++.||+..+||-.....+.+.+.|..+|++.
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc  299 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCC  299 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcccee
Confidence            99999988776  43456666652         58899999988899999999999999998877777778899999999


Q ss_pred             EEeeCCCEEEEE
Q 011978          451 DWSPDGEKVASG  462 (473)
Q Consensus       451 ~~s~d~~~l~s~  462 (473)
                      +|+.+|.++|-+
T Consensus       300 ~fn~~G~ifaYA  311 (347)
T KOG0647|consen  300 SFNRNGSIFAYA  311 (347)
T ss_pred             EecCCCCEEEEE
Confidence            999999999865

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.4e-28  Score=214.70  Aligned_cols=273  Identities=27%  Similarity=0.369  Sum_probs=223.7

Q ss_pred             EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc----------------cC-CCcCCcEEEEEeceecc
Q 011978          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----------------PL-SGHKKWITGISWEPVHL  206 (473)
Q Consensus       144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~----------------~~-~~~~~~v~~i~~~~~~~  206 (473)
                      .....|.-++.||+++||+++.++++.+++|.-|+..+|+....                .. .+|.+.+.+++.++   
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~---  212 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS---  212 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC---
Confidence            34557889999999999999999999999999999988763310                01 26777777777665   


Q ss_pred             CCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEeecCCeEEEEECCCCceeeeeeccCceEE
Q 011978          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVN  285 (473)
Q Consensus       207 ~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~  285 (473)
                        ++.+|++|+.|..|.||+..+.+.+..+++|...|.+++|-.. ..+++++.|+++++|++..-..+.++.+|...|.
T Consensus       213 --Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~  290 (479)
T KOG0299|consen  213 --DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL  290 (479)
T ss_pred             --CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence              7789999999999999999999999999999999999999643 4799999999999999998888888999988888


Q ss_pred             EEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE-ecCCceEEEEeCCCCCCCeeeecCccccee
Q 011978          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-GSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (473)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  364 (473)
                      .+....                                     .+++++ |+.|+++++|++..  ..+..+.+|...+.
T Consensus       291 ~IdaL~-------------------------------------reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sid  331 (479)
T KOG0299|consen  291 GIDALS-------------------------------------RERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSID  331 (479)
T ss_pred             eechhc-------------------------------------ccceEEeccccceeEEEeccc--cceeeeeCCCCCee
Confidence            775432                                     234444 55999999999843  33455677888899


Q ss_pred             EEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC-C-----------ccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-H-----------VGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       365 ~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~-h-----------~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      |++|-. ...+++||.||.|.+|++.+.+++.+.+. |           ..+|++|+..|...++|+||.+|.|++|-+.
T Consensus       332 cv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  332 CVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             eEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence            999874 46799999999999999998888776542 2           2389999999999999999999999999998


Q ss_pred             CC----ceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978          433 TQ----KLKQDLPGHADEVFAVDWSPDGEKVASG  462 (473)
Q Consensus       433 ~~----~~~~~~~~h~~~i~~l~~s~d~~~l~s~  462 (473)
                      .+    .++..++ -.+.|++|+|+++|+++++|
T Consensus       411 ~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  411 DGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             CCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence            76    3445555 45789999999999966554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.6e-28  Score=203.45  Aligned_cols=271  Identities=20%  Similarity=0.281  Sum_probs=201.3

Q ss_pred             CcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCC-cee-EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          107 HTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-TPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       107 h~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~-~~~-~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      ..+.|.+|+|||.. ..++++|.|++||+|+++.. ... .....|.++|.+++|+.||..+++|+-|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            56889999999954 45668899999999999763 322 2234689999999999999999999999999999999986


Q ss_pred             cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeE
Q 011978          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTI  263 (473)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i  263 (473)
                      ..  ....|.++|..+.|.+...   ...++|||+|.+|+.||.+....+.++.- ...+.++..- ...++.+..++.|
T Consensus       106 ~~--~v~~Hd~pvkt~~wv~~~~---~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~-~pm~vVata~r~i  178 (347)
T KOG0647|consen  106 VS--QVAAHDAPVKTCHWVPGMN---YQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL-YPMAVVATAERHI  178 (347)
T ss_pred             ee--eeeecccceeEEEEecCCC---cceeEecccccceeecccCCCCeeeeeec-cceeeehhcc-CceeEEEecCCcE
Confidence            43  4678999999999977432   34689999999999999998877765532 2344444332 2367889999999


Q ss_pred             EEEECCCCceee-ee-eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          264 KVWETTQGKLIR-EL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       264 ~~wd~~~~~~~~-~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      .+|+++++.... .. ..-.-.+++++...+                                    .+..+.|+-.|.+
T Consensus       179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d------------------------------------~~~~alGsiEGrv  222 (347)
T KOG0647|consen  179 AVYNLENPPTEFKRIESPLKWQTRCVACFQD------------------------------------KDGFALGSIEGRV  222 (347)
T ss_pred             EEEEcCCCcchhhhhcCcccceeeEEEEEec------------------------------------CCceEeeeecceE
Confidence            999998764321 11 111233555554433                                    1234666777777


Q ss_pred             EEEeCCCCC-CCeeeecCcc---------cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe
Q 011978          342 FLWEPAVSK-QPKTRMTGHQ---------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS  411 (473)
Q Consensus       342 ~iwd~~~~~-~~~~~~~~~~---------~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s  411 (473)
                      .+..+.... .....+.-|.         ..|++|+|+|....|+|++.||++.+||-.....+...+.|..+|++.+|+
T Consensus       223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn  302 (347)
T KOG0647|consen  223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN  302 (347)
T ss_pred             EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEec
Confidence            666544321 1122222232         358899999999999999999999999998888888888899999999999


Q ss_pred             cCCCEEEEE
Q 011978          412 ADSRLLLSG  420 (473)
Q Consensus       412 p~g~~l~s~  420 (473)
                      .+|.++|-+
T Consensus       303 ~~G~ifaYA  311 (347)
T KOG0647|consen  303 RNGSIFAYA  311 (347)
T ss_pred             CCCCEEEEE
Confidence            999987765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.8e-29  Score=216.13  Aligned_cols=245  Identities=26%  Similarity=0.438  Sum_probs=205.7

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      ...+|.|-.+.|+++.|.++++++++++.|+.+++|++...+....+.+|.+.|+++.|......+++|+.|.+|++||+
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL  290 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence            55678888999999999999999999999999999999999999999999999999999987777999999999999999


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS  258 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~  258 (473)
                      +...+...++.+..  ++.|...+       ..+++|-.|++|++||++...+......+. .|+++..+.++. +++++
T Consensus       291 ~k~~C~kt~l~~S~--cnDI~~~~-------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss  360 (459)
T KOG0288|consen  291 QKAYCSKTVLPGSQ--CNDIVCSI-------SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS  360 (459)
T ss_pred             hhhheecccccccc--ccceEecc-------eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec
Confidence            98877766655433  23333222       357788899999999999999998888776 899999999884 88899


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|.++++.|+++......+...+                                                  +-+    
T Consensus       361 RDdtl~viDlRt~eI~~~~sA~g--------------------------------------------------~k~----  386 (459)
T KOG0288|consen  361 RDDTLKVIDLRTKEIRQTFSAEG--------------------------------------------------FKC----  386 (459)
T ss_pred             CCCceeeeecccccEEEEeeccc--------------------------------------------------ccc----
Confidence            99999999998866554432110                                                  001    


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc--CEEEEEEecCCCE
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG--PVYQISWSADSRL  416 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~--~v~~v~~sp~g~~  416 (473)
                                         +|  ..+.+.|||++.|+|+||.||.|+||++.++++...+.....  .|++++|+|.|..
T Consensus       387 -------------------as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  387 -------------------AS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG  445 (459)
T ss_pred             -------------------cc--ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence                               11  146688999999999999999999999999999888876544  4999999999999


Q ss_pred             EEEEeCCCcEEEE
Q 011978          417 LLSGSKDSTLKVW  429 (473)
Q Consensus       417 l~s~s~Dg~i~iw  429 (473)
                      |++++.++.+.+|
T Consensus       446 Llsadk~~~v~lW  458 (459)
T KOG0288|consen  446 LLSADKQKAVTLW  458 (459)
T ss_pred             hhcccCCcceEec
Confidence            9999999999999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.2e-27  Score=195.52  Aligned_cols=276  Identities=24%  Similarity=0.351  Sum_probs=224.3

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeE--EEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEee
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWD  178 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~--~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd  178 (473)
                      +.+.+|...|.+++|+-+|..||+|+.|+++++|++...+...  ...+|.+.|-.++|+|. ...+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4567899999999999999999999999999999998765433  34689999999999974 56899999999999999


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEe
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~  257 (473)
                      .+.+++......  +..-.-+.|+|     ++.+++.++.|..|.+.|.++.+.+.... ....+..++|+.++ .++.-
T Consensus        94 ~r~~k~~~~i~~--~~eni~i~wsp-----~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   94 IRSGKCTARIET--KGENINITWSP-----DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             eccCcEEEEeec--cCcceEEEEcC-----CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEe
Confidence            999887543221  22223466777     56799999999999999999877665432 33456677787555 45555


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      ..-|+|.|.....-+.+.+++.|.....++.++|+.                                    ..+++|+.
T Consensus       166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G------------------------------------ryfA~GsA  209 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG------------------------------------RYFATGSA  209 (313)
T ss_pred             cCCceEEEEeccccccccccccCCcceEEEEECCCC------------------------------------ceEeeccc
Confidence            556999999999989999999999888888888763                                    35899999


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL  417 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l  417 (473)
                      |..+.+||+.... ....+..+.-+|+.+.||.||++||+||.|..|-|=+.++|..+..++ +.++-..|+|+|...+|
T Consensus       210 DAlvSLWD~~ELi-C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LL  287 (313)
T KOG1407|consen  210 DALVSLWDVDELI-CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLL  287 (313)
T ss_pred             cceeeccChhHhh-hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCcee
Confidence            9999999975332 233445567789999999999999999999999999999999888876 78899999999999999


Q ss_pred             EEEeCC
Q 011978          418 LSGSKD  423 (473)
Q Consensus       418 ~s~s~D  423 (473)
                      |-++.|
T Consensus       288 AyA~dd  293 (313)
T KOG1407|consen  288 AYACDD  293 (313)
T ss_pred             eEEecC
Confidence            988765

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=1.1e-26  Score=218.18  Aligned_cols=356  Identities=20%  Similarity=0.313  Sum_probs=266.0

Q ss_pred             EEEEEECCCC--CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          111 VLSVAFSPDG--RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       111 V~~~~~sp~~--~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      |+++ +||.-  ..++.|+.+|.+++|++++++.+..++++...|+++.=+|-=..++.|..+|+|.+++++.++.+...
T Consensus       162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF  240 (910)
T KOG1539|consen  162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF  240 (910)
T ss_pred             eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence            5443 56653  45788999999999999999999999999999999999998889999999999999999988865432


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEecCCC-eEEEeecCCeEEEE
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKVW  266 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~l~s~~~d~~i~~w  266 (473)
                       ....+.|+.++|.-.    ....+++++..|.+.+||++..+.+..+. .|...|..+.|-+.. .+++++.|+.+++|
T Consensus       241 -k~d~g~VtslSFrtD----G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~  315 (910)
T KOG1539|consen  241 -KQDWGRVTSLSFRTD----GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW  315 (910)
T ss_pred             -EccccceeEEEeccC----CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence             222488999998742    22467888889999999999988876655 788888888887655 78899999999987


Q ss_pred             ECC--CC--ceeeeeeccCceEEEEEeccc--ceeeeccccCCCcccCCHHHHHHHHHhhh---------h---cccC--
Q 011978          267 ETT--QG--KLIRELKGHGHWVNSLALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERY---------N---KIKG--  326 (473)
Q Consensus       267 d~~--~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~--  326 (473)
                      =..  .|  +.++.-.+|..+-.++.+...  ..+.....|.+-+.+....+.....+...         +   ...-  
T Consensus       316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~  395 (910)
T KOG1539|consen  316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL  395 (910)
T ss_pred             EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence            544  33  566777888888888876532  23333444444444433322222211110         0   0000  


Q ss_pred             -------------CC-CceEEEecCCceEEEEeCCCCCCCeeee-----cCcccceeEEEECCCCcEEEEEECCCcEEEE
Q 011978          327 -------------NA-PERLVSGSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (473)
Q Consensus       327 -------------~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~v~~sp~g~~lasgs~d~~v~lw  387 (473)
                                   .. .+.+...-.+..++.|+..........+     ......+++++.++.|++.+.|...|+|.+|
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f  475 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF  475 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence                         00 1123344456678889876543322211     2234568999999999999999999999999


Q ss_pred             eCCCCceEEEe---eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce----------------------------
Q 011978          388 NGTTGKFVAVF---RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL----------------------------  436 (473)
Q Consensus       388 d~~~~~~~~~~---~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~----------------------------  436 (473)
                      ++++|-....|   ..|.++|++++...-++.+++++.||-++.||...+..                            
T Consensus       476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd  555 (910)
T KOG1539|consen  476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD  555 (910)
T ss_pred             EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence            99999888787   58999999999988889999999999999998765431                            


Q ss_pred             -------------eecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          437 -------------KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       437 -------------~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                                   ...+.||.++|++++|||||+||++++.|++|++|+
T Consensus       556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence                         123458999999999999999999999999999997

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.7e-27  Score=207.70  Aligned_cols=281  Identities=20%  Similarity=0.333  Sum_probs=240.5

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      ..+.++...|....+.+|+.|..+.++|...++.+..++||...|..+.|+|+...+++++.|..|++|....... ...
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-~~~  298 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-PTS  298 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-ccc
Confidence            5688888888878899999999999999999998899999999999999999999999999999999998765542 234


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC--ccccEEEEEecCCCe-EEEeecCCeEEE
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDGV-IYTGSQDCTIKV  265 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~-l~s~~~d~~i~~  265 (473)
                      ...|..+|+.+..+|     .+.+|++++.|+...+.|++++.++.....  ....+++.+|+|||. +.+|..|+.+++
T Consensus       299 ~~~h~~~V~~ls~h~-----tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHP-----TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI  373 (506)
T ss_pred             cccccccceeeeecc-----CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence            677999999988766     568999999999999999999988765543  334689999999996 558999999999


Q ss_pred             EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (473)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  345 (473)
                      ||+.++..+..|.+|..+|..+.|+.++                                    ..++++++|+.+++||
T Consensus       374 wdlks~~~~a~Fpght~~vk~i~FsENG------------------------------------Y~Lat~add~~V~lwD  417 (506)
T KOG0289|consen  374 WDLKSQTNVAKFPGHTGPVKAISFSENG------------------------------------YWLATAADDGSVKLWD  417 (506)
T ss_pred             EEcCCccccccCCCCCCceeEEEeccCc------------------------------------eEEEEEecCCeEEEEE
Confidence            9999999999999999999999998764                                    3489999999999999


Q ss_pred             CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC--CCceEEEeeCCccCEEEEEEecCCCEEEEEeCC
Q 011978          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT--TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD  423 (473)
Q Consensus       346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~--~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D  423 (473)
                      ++..+..+.........+.++.|.+.|.+|+.++.|=.|++++-.  +..++..+..|.+..+.+.|..+.++++++|.|
T Consensus       418 LRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd  497 (506)
T KOG0289|consen  418 LRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD  497 (506)
T ss_pred             ehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccch
Confidence            988776655555555579999999999999999887566665533  455677788899999999999999999999999


Q ss_pred             CcEEEEEC
Q 011978          424 STLKVWDI  431 (473)
Q Consensus       424 g~i~iwd~  431 (473)
                      ..++++-+
T Consensus       498 ~~l~~~a~  505 (506)
T KOG0289|consen  498 AILRLYAL  505 (506)
T ss_pred             hheEEeec
Confidence            99888754

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.5e-27  Score=226.14  Aligned_cols=228  Identities=20%  Similarity=0.303  Sum_probs=179.3

Q ss_pred             cccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCEEEEEECCCC-CeEEEEecCCe
Q 011978          103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGE  173 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~  173 (473)
                      .+.||.+.|++++|+| ++++||+|+.|++|++||+.++       .++..+.+|...|.+++|+|++ .+|++++.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4789999999999999 8899999999999999999764       3456788999999999999985 68999999999


Q ss_pred             EEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE-EEEEecCCC
Q 011978          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-TCVKWGGDG  252 (473)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v-~~~~~~~~~  252 (473)
                      |++||+++++... .+.+|...|.++.|+|     ++..+++++.|++|++||+++++.+..+.+|...+ ..+.|.+++
T Consensus       150 VrIWDl~tg~~~~-~l~~h~~~V~sla~sp-----dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~  223 (493)
T PTZ00421        150 VNVWDVERGKAVE-VIKCHSDQITSLEWNL-----DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK  223 (493)
T ss_pred             EEEEECCCCeEEE-EEcCCCCceEEEEEEC-----CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCC
Confidence            9999999886543 4678999999999987     45689999999999999999999988888887653 456677654


Q ss_pred             -eEEEee----cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCC
Q 011978          253 -VIYTGS----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (473)
Q Consensus       253 -~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (473)
                       .+++++    .|+.|++||+++........                                                 
T Consensus       224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~-------------------------------------------------  254 (493)
T PTZ00421        224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTV-------------------------------------------------  254 (493)
T ss_pred             CeEEEEecCCCCCCeEEEEeCCCCCCceeEe-------------------------------------------------
Confidence             555543    47889999986532110000                                                 


Q ss_pred             CCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeC-CccCE
Q 011978          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRG-HVGPV  405 (473)
Q Consensus       328 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~-h~~~v  405 (473)
                                       +           ..+...+....|++++++|++|+ .|+.|++||+.+++++..... +..++
T Consensus       255 -----------------~-----------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~  306 (493)
T PTZ00421        255 -----------------D-----------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH  306 (493)
T ss_pred             -----------------c-----------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence                             0           00112344567899999999887 599999999999987766543 44567


Q ss_pred             EEEEEecC
Q 011978          406 YQISWSAD  413 (473)
Q Consensus       406 ~~v~~sp~  413 (473)
                      ..++|.|.
T Consensus       307 ~g~~~~pk  314 (493)
T PTZ00421        307 KGLCMMPK  314 (493)
T ss_pred             cceEeccc
Confidence            78888874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.3e-29  Score=227.48  Aligned_cols=236  Identities=23%  Similarity=0.457  Sum_probs=197.5

Q ss_pred             CCCCeEEEEecCCeEEEeeCCCCcc-----ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC--eE
Q 011978          160 ADGKHLVSGSKAGELQCWDPQTGKP-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KC  232 (473)
Q Consensus       160 ~dg~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~--~~  232 (473)
                      |.+++|++|+.||.|++|+......     -...++.|.++|+.+....     .++.|+++|.|-+|++|+...+  -|
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-----~~~tlIS~SsDtTVK~W~~~~~~~~c  109 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-----NGKTLISASSDTTVKVWNAHKDNTFC  109 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-----CCCceEEecCCceEEEeecccCcchh
Confidence            4677899999999999999765332     1234678999998875332     3458999999999999999877  67


Q ss_pred             EEEecCccccEEEEEe-cCCC-eEEEeecCCeEEEEECCCCce--eeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978          233 VICLSGHTLAVTCVKW-GGDG-VIYTGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (473)
Q Consensus       233 ~~~~~~h~~~v~~~~~-~~~~-~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (473)
                      +.++..|...|.|+++ .++. .+++|+-|+.|.+||+.++..  +.++..                             
T Consensus       110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-----------------------------  160 (735)
T KOG0308|consen  110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN-----------------------------  160 (735)
T ss_pred             HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-----------------------------
Confidence            8888999999999999 4544 688999999999999987632  211110                             


Q ss_pred             CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (473)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd  388 (473)
                                             +                  .......|+...|.++|.++.|..|++|+..+.+++||
T Consensus       161 -----------------------~------------------t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD  199 (735)
T KOG0308|consen  161 -----------------------V------------------TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD  199 (735)
T ss_pred             -----------------------c------------------ccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence                                   0                  00001116677899999999999999999999999999


Q ss_pred             CCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978          389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL  468 (473)
Q Consensus       389 ~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i  468 (473)
                      .++++.+..++||+..|..+..++||+.++++|.||+|++||+..++++.++..|.+.|+++..+|+=+++.+|+.|+.|
T Consensus       200 prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i  279 (735)
T KOG0308|consen  200 PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNI  279 (735)
T ss_pred             cccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             Ee
Q 011978          469 KL  470 (473)
Q Consensus       469 ~~  470 (473)
                      ..
T Consensus       280 ~~  281 (735)
T KOG0308|consen  280 YR  281 (735)
T ss_pred             Ee
Confidence            53

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-28  Score=225.48  Aligned_cols=277  Identities=22%  Similarity=0.406  Sum_probs=209.9

Q ss_pred             EEEEC-CCCCeEEEEeCCCeEEEEeCCCCc------eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc-c
Q 011978          113 SVAFS-PDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-P  184 (473)
Q Consensus       113 ~~~~s-p~~~~lat~s~d~~i~iwd~~~~~------~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~-~  184 (473)
                      .+..+ |.+++|+||+.||.|++|++....      ...++..|.+||..+....+|+.|++++.|-+|++|+...+. .
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            34444 456779999999999999985422      255678899999999999999999999999999999987663 1


Q ss_pred             ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE--EE--------Eec-CccccEEEEEecCCCe
Q 011978          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC--VI--------CLS-GHTLAVTCVKWGGDGV  253 (473)
Q Consensus       185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~--~~--------~~~-~h~~~v~~~~~~~~~~  253 (473)
                      -...+..|++.|.++++..    .....+++||-|+.|.+||+.++..  +.        .+. |+...|.+++-++.|.
T Consensus       109 c~stir~H~DYVkcla~~a----k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t  184 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIA----KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT  184 (735)
T ss_pred             hHhhhhcccchheeeeecc----cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce
Confidence            1234678999999998732    2446899999999999999987632  11        112 5555566666555553


Q ss_pred             -EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          254 -IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       254 -l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                       +++|+..+.+++||-++++.+                                                          
T Consensus       185 ~ivsGgtek~lr~wDprt~~ki----------------------------------------------------------  206 (735)
T KOG0308|consen  185 IIVSGGTEKDLRLWDPRTCKKI----------------------------------------------------------  206 (735)
T ss_pred             EEEecCcccceEEeccccccce----------------------------------------------------------
Confidence             445555555566655443322                                                          


Q ss_pred             EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA  412 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp  412 (473)
                                           .++.||...|.++..++||+.++++|.||+|++||+...+++.++..|...|+++..+|
T Consensus       207 ---------------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~  265 (735)
T KOG0308|consen  207 ---------------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP  265 (735)
T ss_pred             ---------------------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence                                 23457888899999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       413 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +=.++++|+.||.|+.=|+++......+-....+|..+..+.+.+-+=+++.|+.|+-|.
T Consensus       266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence            999999999999999999988544333333445566666664444446667777788775

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=7.4e-27  Score=203.79  Aligned_cols=279  Identities=20%  Similarity=0.282  Sum_probs=237.4

Q ss_pred             CCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC
Q 011978          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR  230 (473)
Q Consensus       151 ~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~  230 (473)
                      ..+.++...|....+++|+.|..+.++|...++.+ ..+.||...|+.+.++|.     ....++++.|..|++|.....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-~~~~Gh~kki~~v~~~~~-----~~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-ATLKGHTKKITSVKFHKD-----LDTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhh-hhccCcceEEEEEEeccc-----hhheeecCCcceEEeeccccc
Confidence            45888888887789999999999999998876644 468999999999998874     357889999999999999988


Q ss_pred             eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeec--cCceEEEEEecccceeeeccccCCCccc
Q 011978          231 KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQY  307 (473)
Q Consensus       231 ~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  307 (473)
                      .+......|..+|+.+..++.| ++++++.|++..+.|.++|..+.....  .+..+.+.+++|+..             
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-------------  360 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-------------  360 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-------------
Confidence            8888888999999999999887 799999999999999999988766544  344577788887743             


Q ss_pred             CCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEE
Q 011978          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (473)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lw  387 (473)
                                             .+.+|..|+.+++||+.... ...++.+|.+.|..++|+.+|-|||++..|+.|++|
T Consensus       361 -----------------------ifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw  416 (506)
T KOG0289|consen  361 -----------------------IFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW  416 (506)
T ss_pred             -----------------------EEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE
Confidence                                   47789999999999987655 667889999999999999999999999999999999


Q ss_pred             eCCCCceEEEeeCCc-cCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978          388 NGTTGKFVAVFRGHV-GPVYQISWSADSRLLLSGSKDSTLKVWDIR--TQKLKQDLPGHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       388 d~~~~~~~~~~~~h~-~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~--~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      |++..+...++.... .+|.++.|.+.|.+|+.++.|=.|++++-.  ....+..+..|.+..+.+.|..+.++++++|.
T Consensus       417 DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm  496 (506)
T KOG0289|consen  417 DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM  496 (506)
T ss_pred             EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccc
Confidence            999888777765432 369999999999999999887666666633  35567778888888999999999999999999


Q ss_pred             CCcEEecc
Q 011978          465 DRVLKLWM  472 (473)
Q Consensus       465 D~~i~~w~  472 (473)
                      |..++++.
T Consensus       497 d~~l~~~a  504 (506)
T KOG0289|consen  497 DAILRLYA  504 (506)
T ss_pred             hhheEEee
Confidence            99998864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=7.8e-28  Score=211.51  Aligned_cols=243  Identities=26%  Similarity=0.477  Sum_probs=197.9

Q ss_pred             CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe----------EEEEecCccccEEEEEecC--CCeEEEee
Q 011978          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----------CVICLSGHTLAVTCVKWGG--DGVIYTGS  258 (473)
Q Consensus       191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~~~--~~~l~s~~  258 (473)
                      .|.+.|+.+.+.|..    ...+++.+..+.+.|||.....          .-..+.||...-..++|+.  .+.+++++
T Consensus       122 ~h~gEVnRaRymPQn----p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~  197 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQN----PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS  197 (422)
T ss_pred             cCCccchhhhhCCCC----CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence            477888888888854    3478888999999999975421          1236778988778899986  46899999


Q ss_pred             cCCeEEEEECCCCce-------eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978          259 QDCTIKVWETTQGKL-------IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (473)
                      .|++|.+||+.....       ...+.+|+..|..+++++.                                   ....
T Consensus       198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-----------------------------------h~~l  242 (422)
T KOG0264|consen  198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-----------------------------------HEDL  242 (422)
T ss_pred             CCCcEEEEeccccccCCccccceEEeecCCcceehhhcccc-----------------------------------chhh
Confidence            999999999865432       3456788888888877653                                   2346


Q ss_pred             EEEecCCceEEEEeCCC-CCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEE
Q 011978          332 LVSGSDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQI  408 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v  408 (473)
                      +.++++|+.+.|||.+. ...+.....+|...++|++|+| ++..||+||.|++|++||+++. +++.++.+|...|.+|
T Consensus       243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V  322 (422)
T KOG0264|consen  243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQV  322 (422)
T ss_pred             heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEE
Confidence            88999999999999986 4455566788999999999999 6678999999999999999975 4688999999999999


Q ss_pred             EEecCC-CEEEEEeCCCcEEEEECCC-C-------------ceeecccccCCCEEEEEEeeCCCEE-EEEeCCCcEEecc
Q 011978          409 SWSADS-RLLLSGSKDSTLKVWDIRT-Q-------------KLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLWM  472 (473)
Q Consensus       409 ~~sp~g-~~l~s~s~Dg~i~iwd~~~-~-------------~~~~~~~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~~w~  472 (473)
                      .|||+. ..||+++.|+.+.+||+.. +             +++..-.||...|..++|+|...++ +|++.|+.+.||+
T Consensus       323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence            999964 6899999999999999864 1             1234456899999999999998765 7899999999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=3.2e-28  Score=204.77  Aligned_cols=239  Identities=27%  Similarity=0.490  Sum_probs=196.8

Q ss_pred             CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc-------ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (473)
Q Consensus       149 ~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~  221 (473)
                      ...-+.|..|||||++|++|+.||.|.+||..+|+...       ..+--+...|.++.|+.     +...+++|+.||.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-----DsEMlAsGsqDGk  286 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-----DSEMLASGSQDGK  286 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-----cHHHhhccCcCCc
Confidence            34558899999999999999999999999999887432       12345677888888765     5678999999999


Q ss_pred             EEEEECCCCeEEEEec-CccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978          222 ARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (473)
Q Consensus       222 i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (473)
                      |++|.+.+|.|+..+. .|+..|+|+.|+.|+ .+++++.|.++++--+.+|++++.+++                    
T Consensus       287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG--------------------  346 (508)
T KOG0275|consen  287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG--------------------  346 (508)
T ss_pred             EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC--------------------
Confidence            9999999999998886 899999999999887 699999999999988888877665544                    


Q ss_pred             ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE
Q 011978          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (473)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs  379 (473)
                                                                                 |...|+...|++||.+++++|
T Consensus       347 -----------------------------------------------------------HsSyvn~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  347 -----------------------------------------------------------HSSYVNEATFTDDGHHIISAS  367 (508)
T ss_pred             -----------------------------------------------------------ccccccceEEcCCCCeEEEec
Confidence                                                                       455567778999999999999


Q ss_pred             CCCcEEEEeCCCCceEEEeeC--CccCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceeeccccc---CCCEEEEEEe
Q 011978          380 FDKSIKLWNGTTGKFVAVFRG--HVGPVYQISWSAD-SRLLLSGSKDSTLKVWDIRTQKLKQDLPGH---ADEVFAVDWS  453 (473)
Q Consensus       380 ~d~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h---~~~i~~l~~s  453 (473)
                      .||+|++|+..+++|+.+|+.  ...+|+++..-|. ..+++.+...++|+|-++..+ ....+...   .+.-.+...|
T Consensus       368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vVrsfsSGkREgGdFi~~~lS  446 (508)
T KOG0275|consen  368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VVRSFSSGKREGGDFINAILS  446 (508)
T ss_pred             CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EEeeeccCCccCCceEEEEec
Confidence            999999999999999998874  3457888888774 467888989999999998754 33443321   2334466789


Q ss_pred             eCCCEEEEEeCCCcEEecc
Q 011978          454 PDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       454 ~d~~~l~s~~~D~~i~~w~  472 (473)
                      |.|.++.+.+.|+.+..|.
T Consensus       447 pkGewiYcigED~vlYCF~  465 (508)
T KOG0275|consen  447 PKGEWIYCIGEDGVLYCFS  465 (508)
T ss_pred             CCCcEEEEEccCcEEEEEE
Confidence            9999999999999998874

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=194.99  Aligned_cols=294  Identities=21%  Similarity=0.330  Sum_probs=199.9

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCEEEEEECCCCCeEEE-EecCCeE
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGEL  174 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~dg~~l~s-~~~dg~i  174 (473)
                      ...|.||.+.|++++|+.||+.|||++.|++|+||++....     .+...- .-+--+.+.|+||-+-++. +-...++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence            46789999999999999999999999999999999987532     111110 1123567899999775554 4455679


Q ss_pred             EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-e
Q 011978          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V  253 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~  253 (473)
                      ++|.....+.-       ......+.|...++                             -..|...+-.+-...++ +
T Consensus       158 ~vyk~~K~~dG-------~~~~~~v~~D~~~f-----------------------------~~kh~v~~i~iGiA~~~k~  201 (420)
T KOG2096|consen  158 CVYKLVKKTDG-------SGSHHFVHIDNLEF-----------------------------ERKHQVDIINIGIAGNAKY  201 (420)
T ss_pred             EEEEeeecccC-------CCCccccccccccc-----------------------------chhcccceEEEeecCCceE
Confidence            99976432210       00111111111111                             11244444444444445 5


Q ss_pred             EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      |++++.|..|.+|+++ |+.+..+......-...+++|+                                    ...++
T Consensus       202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~------------------------------------GRFia  244 (420)
T KOG2096|consen  202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD------------------------------------GRFIA  244 (420)
T ss_pred             EEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC------------------------------------CcEEE
Confidence            8899999999999998 8877766543333333444444                                    23467


Q ss_pred             EecCCceEEEEeCCCCC-------CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC----C---ceEEEee
Q 011978          334 SGSDDFTMFLWEPAVSK-------QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----G---KFVAVFR  399 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~----~---~~~~~~~  399 (473)
                      +++.--.+++|++--.+       .....+.||+..|..++|+|+.+.+++.|.||++++||..-    +   +.+.+..
T Consensus       245 ~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~  324 (420)
T KOG2096|consen  245 VSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS  324 (420)
T ss_pred             EecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC
Confidence            77777778899864332       12345789999999999999999999999999999999652    1   2222221


Q ss_pred             ----CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc-cccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          400 ----GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       400 ----~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                          ...+.-..++.||.|+.||.+. ...+++|..++++...++ ..|...|.+++|++||++++++|.- .+++
T Consensus       325 ~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv  398 (420)
T KOG2096|consen  325 APLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRV  398 (420)
T ss_pred             cchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeee
Confidence                1122334899999999888654 457999999988766544 3588899999999999999998764 4444

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1.2e-27  Score=210.40  Aligned_cols=246  Identities=24%  Similarity=0.506  Sum_probs=199.8

Q ss_pred             CCcccEEEEEECCCCCe-EEEEeCCCeEEEEeCCCC----------ceeEEEcCCCCCEEEEEECCC-CCeEEEEecCCe
Q 011978          106 GHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQ----------TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGE  173 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~-lat~s~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~  173 (473)
                      -|.+.|+.++.-|+... +|+.+..+.|.|||..+.          .|-..+.+|++.-..|+|++. .-.|++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            48899999999998765 567788899999998543          223467899987788999985 347999999999


Q ss_pred             EEEeeCCCCcc------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC--CCeEEEEecCccccEEE
Q 011978          174 LQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--LRKCVICLSGHTLAVTC  245 (473)
Q Consensus       174 i~iwd~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~v~~  245 (473)
                      |.+||++....      ....+.+|...|..++|++.+-    ..|++++.|+.+.|||++  +.+......+|.+.|.|
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~----~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE----DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccch----hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence            99999875432      2234689999999999999654    479999999999999999  56666777899999999


Q ss_pred             EEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978          246 VKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (473)
Q Consensus       246 ~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (473)
                      ++|++-+  +|++|+.|++|++||+++-+                                                   
T Consensus       278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~---------------------------------------------------  306 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSADKTVALWDLRNLN---------------------------------------------------  306 (422)
T ss_pred             EEeCCCCCceEEeccCCCcEEEeechhcc---------------------------------------------------
Confidence            9999743  67888889999999876521                                                   


Q ss_pred             ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCC-----------
Q 011978          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTT-----------  391 (473)
Q Consensus       324 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~-----------  391 (473)
                                                 .+...+.+|...|.+|.|||+ ...||+++.|+.+.+||+..           
T Consensus       307 ---------------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~  359 (422)
T KOG0264|consen  307 ---------------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE  359 (422)
T ss_pred             ---------------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence                                       233445678889999999995 56889999999999999863           


Q ss_pred             ---CceEEEeeCCccCEEEEEEecCCC-EEEEEeCCCcEEEEECCC
Q 011978          392 ---GKFVAVFRGHVGPVYQISWSADSR-LLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       392 ---~~~~~~~~~h~~~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~  433 (473)
                         .+++.+-.||.+.|..+.|+|+.. .|+|++.|+.+.||++..
T Consensus       360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence               134567789999999999999765 588899999999999864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.6e-27  Score=209.84  Aligned_cols=245  Identities=27%  Similarity=0.420  Sum_probs=202.2

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCC-CeEEEEecCCeEEEeeCCCC
Q 011978          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~~~~  182 (473)
                      +.--.+.|.++.|-.||++||+|...|.|+|||+++...+..+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+.
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence            34456889999999999999999999999999977766667788999999999999964 56678888999999999988


Q ss_pred             ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCCeEEEeecCC
Q 011978          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDC  261 (473)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~  261 (473)
                      .. ...+.+|++.|.+.+|.|..    ...++|||.||+|++||++.. ..+..+ .|..+|..+.+-|.|.+++.....
T Consensus       144 ~v-~~~l~~htDYVR~g~~~~~~----~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn  217 (487)
T KOG0310|consen  144 YV-QAELSGHTDYVRCGDISPAN----DHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN  217 (487)
T ss_pred             EE-EEEecCCcceeEeeccccCC----CeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC
Confidence            75 44689999999999999853    357999999999999999887 444444 588899999998887655555567


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      .+++||+.+|...                                                                   
T Consensus       218 ~vkVWDl~~G~ql-------------------------------------------------------------------  230 (487)
T KOG0310|consen  218 SVKVWDLTTGGQL-------------------------------------------------------------------  230 (487)
T ss_pred             eEEEEEecCCcee-------------------------------------------------------------------
Confidence            8999998755321                                                                   


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS  421 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s  421 (473)
                                 ...+..|...|+|+++..++..|++|+.|+.|++||+.+-+.+..+. -.++|.+++.+||++.++.|-
T Consensus       231 -----------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGm  298 (487)
T KOG0310|consen  231 -----------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGM  298 (487)
T ss_pred             -----------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEec
Confidence                       11223477789999999999999999999999999988888888776 467999999999999999999


Q ss_pred             CCCcEEEEECCC
Q 011978          422 KDSTLKVWDIRT  433 (473)
Q Consensus       422 ~Dg~i~iwd~~~  433 (473)
                      .||.+-+=+...
T Consensus       299 snGlv~~rr~~~  310 (487)
T KOG0310|consen  299 SNGLVSIRRREV  310 (487)
T ss_pred             ccceeeeehhhc
Confidence            999887664433

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=1e-26  Score=193.25  Aligned_cols=298  Identities=24%  Similarity=0.375  Sum_probs=223.7

Q ss_pred             cCCcccEEEEEECCC-CCeEEEEeCCCeEEEEeCCCCce--------eEE-------EcCCCCCEEEEEECC-CCCeEEE
Q 011978          105 AGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTP--------MFK-------CTGHKNWVLCIAWSA-DGKHLVS  167 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~-~~~lat~s~d~~i~iwd~~~~~~--------~~~-------~~~~~~~v~~l~~s~-dg~~l~s  167 (473)
                      ..|.+.|+++.+.+. |+++++|+.||.|.+||++....        ...       -.+|...|.++.|-| |...+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            348999999999885 88999999999999999975320        111       136788899999998 5557778


Q ss_pred             EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 011978          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (473)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  247 (473)
                      ++.|.++++||.++.+....  ..-.+.|.+-+++|....  -..+++|..+-.|++.|+..|.+...+.||...|.++.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~--F~me~~VYshamSp~a~s--HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVD--FKMEGKVYSHAMSPMAMS--HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             ccccceEEEeecccceeeEE--eecCceeehhhcChhhhc--ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence            99999999999987654321  223455677777775432  24677888899999999999999999999999999999


Q ss_pred             ecCCC--eEEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcc
Q 011978          248 WGGDG--VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (473)
Q Consensus       248 ~~~~~--~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (473)
                      |+|..  .|++|+.||.|++||++.. .+.+.+..|...                                         
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k-----------------------------------------  234 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK-----------------------------------------  234 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccceeEEeecccCc-----------------------------------------
Confidence            99865  5889999999999998754 333333322110                                         


Q ss_pred             cCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE-EEee--CC
Q 011978          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-AVFR--GH  401 (473)
Q Consensus       325 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~-~~~~--~h  401 (473)
                                              ..+..+.-..|.+.++.++|+.+|.++++.+.|..+++|+..+|+.. ..+.  .|
T Consensus       235 ------------------------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~  290 (397)
T KOG4283|consen  235 ------------------------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH  290 (397)
T ss_pred             ------------------------cCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccc
Confidence                                    00111123467888999999999999999999999999999887532 1110  11


Q ss_pred             c---cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          402 V---GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       402 ~---~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +   ++-.-+. +.+...++--=.|+.+.++++-++..+..+.+|...|.+..+.|+=+...+++.|+.|..|.
T Consensus       291 n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  291 NQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS  363 (397)
T ss_pred             cccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence            1   1111122 33333444444568899999999999999999999999999999999999999999998884

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7e-26  Score=190.70  Aligned_cols=241  Identities=19%  Similarity=0.273  Sum_probs=189.8

Q ss_pred             EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC--CCcEE
Q 011978          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDAR  223 (473)
Q Consensus       146 ~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~  223 (473)
                      +......|.++.|+++|.++++++.|.++++||..+++.... +..++-.+..+.|-.     ....++.++.  |.+||
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t-i~skkyG~~~~~Fth-----~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT-INSKKYGVDLACFTH-----HSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-eecccccccEEEEec-----CCceEEEccCCCCCceE
Confidence            344567799999999999999999999999999999887653 333333444444432     1234444444  88999


Q ss_pred             EEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978          224 IWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       224 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                      ..++.+++.+..+.||...|.+++.+|-+ .+++++.|++|++||++..++...+..                       
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----------------------  140 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----------------------  140 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----------------------
Confidence            99999999999999999999999999854 789999999999999986544322110                       


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~  382 (473)
                                                                                ..-..+||+|.|-++|++....
T Consensus       141 ----------------------------------------------------------~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen  141 ----------------------------------------------------------SGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             ----------------------------------------------------------CCCcceeECCCCcEEEEecCCC
Confidence                                                                      0112468999999999999888


Q ss_pred             cEEEEeCCCC--ceEEEee---CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCE---EEEEEee
Q 011978          383 SIKLWNGTTG--KFVAVFR---GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV---FAVDWSP  454 (473)
Q Consensus       383 ~v~lwd~~~~--~~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i---~~l~~s~  454 (473)
                      .|++||++.-  .+..++.   +.....+.+.|||||++|+.+...+.+++.|.-+|..+.++.++...-   ....|+|
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP  242 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP  242 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence            9999999853  2333333   346678999999999999999999999999999999888877765422   5678999


Q ss_pred             CCCEEEEEeCCCcEEeccC
Q 011978          455 DGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       455 d~~~l~s~~~D~~i~~w~~  473 (473)
                      |++++.+|+.||+|.+|++
T Consensus       243 ds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  243 DSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             CCcEEEEecCCCcEEEEEc
Confidence            9999999999999999974

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=3.8e-27  Score=213.40  Aligned_cols=289  Identities=22%  Similarity=0.378  Sum_probs=227.2

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCe-EEEEecCCeEEE
Q 011978           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGSKAGELQC  176 (473)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~-l~s~~~dg~i~i  176 (473)
                      ..|...+.||++.|.+++.+|.|.+||+|+.||+||||.+.|+.++..+. ....|.|++|+|.+.. +++++....+.|
T Consensus       390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLI  468 (733)
T ss_pred             ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEE
Confidence            45667789999999999999999999999999999999999999987765 3457999999997653 333344444555


Q ss_pred             eeCCCCcccc------------------------------------ccCCCcCCcEEEEEeceeccCCCCceEEEeeCC-
Q 011978          177 WDPQTGKPSG------------------------------------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-  219 (473)
Q Consensus       177 wd~~~~~~~~------------------------------------~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-  219 (473)
                      -+..-|..+.                                    ...-.|.+.|..+.|+.     .+.+|++...+ 
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-----kGDYlatV~~~~  543 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-----KGDYLATVMPDS  543 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-----CCceEEEeccCC
Confidence            5543221000                                    01123556667777765     56788876543 


Q ss_pred             --CcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceee
Q 011978          220 --GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (473)
Q Consensus       220 --g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  296 (473)
                        ..|.|+++..++...-|..-.+.|.++.|.|.. +++.+ .-..|++||+..+.+++.+.....+|..+++++.    
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~----  618 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN----  618 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-eccceEEEehhHHHHHHHHhcCCeeeeeeeecCC----
Confidence              578889988777666565556678999999876 44444 4578999999988888888777788888888764    


Q ss_pred             eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEE
Q 011978          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA  376 (473)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~la  376 (473)
                                                      .+.++.++.|+.+.++|+..+..+..++.-|...+++|+|++.-.++|
T Consensus       619 --------------------------------GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa  666 (733)
T KOG0650|consen  619 --------------------------------GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA  666 (733)
T ss_pred             --------------------------------CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee
Confidence                                            457999999999999999988888899999999999999999999999


Q ss_pred             EEECCCcEEEEeCC------C-C--ceEEEeeCCccC----EEEEEEecCCCEEEEEeCCCcEEEE
Q 011978          377 SASFDKSIKLWNGT------T-G--KFVAVFRGHVGP----VYQISWSADSRLLLSGSKDSTLKVW  429 (473)
Q Consensus       377 sgs~d~~v~lwd~~------~-~--~~~~~~~~h~~~----v~~v~~sp~g~~l~s~s~Dg~i~iw  429 (473)
                      +|+.||++.|+...      . .  -++..+++|...    |.++.|+|...+|++++.||+|++|
T Consensus       667 s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  667 SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            99999999998532      1 1  245677888654    9999999999999999999999998

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=192.47  Aligned_cols=242  Identities=22%  Similarity=0.369  Sum_probs=190.5

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCC--eEEEEecCCeEEEeeCC
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~s~~~dg~i~iwd~~  180 (473)
                      .+..|.++|+++|.  ++.++|+||.|-+|+|||+.+..++..+..|.+.|+++.|.++-.  +|++|+.||.|.+|+..
T Consensus        38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            45679999999999  589999999999999999999988888889999999999998765  89999999999999987


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecC
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD  260 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d  260 (473)
                      .-... ..+.+|.+.|+.++.+|     .+..-++.+.|+.+++||+-.++.-..++-. ..-+.+.|++.|--++-+.-
T Consensus       116 ~W~~~-~slK~H~~~Vt~lsiHP-----S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  116 SWELL-KSLKAHKGQVTDLSIHP-----SGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             CeEEe-eeecccccccceeEecC-----CCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEec
Confidence            66443 35788999999999888     4456788999999999999887765544321 12234889888753333333


Q ss_pred             CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      ..|-+|.+.+.+....+.                                                              
T Consensus       189 ~~i~i~q~d~A~v~~~i~--------------------------------------------------------------  206 (362)
T KOG0294|consen  189 NKIDIYQLDNASVFREIE--------------------------------------------------------------  206 (362)
T ss_pred             cEEEEEecccHhHhhhhh--------------------------------------------------------------
Confidence            456677655433222110                                                              


Q ss_pred             EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE--ecCCCEEE
Q 011978          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW--SADSRLLL  418 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~--sp~g~~l~  418 (473)
                                        .+..+.++.|- ++.+|++|+.|+.|++||..+..+...+.+|...|-++.+  .|++.+|+
T Consensus       207 ------------------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lv  267 (362)
T KOG0294|consen  207 ------------------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLV  267 (362)
T ss_pred             ------------------ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEE
Confidence                              00123344443 5778999999999999999999999999999999999984  56789999


Q ss_pred             EEeCCCcEEEEECCCC
Q 011978          419 SGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       419 s~s~Dg~i~iwd~~~~  434 (473)
                      ++|.||.|++||++..
T Consensus       268 TaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  268 TASSDGFIKVWDIDME  283 (362)
T ss_pred             EeccCceEEEEEcccc
Confidence            9999999999999764

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=5.4e-26  Score=217.88  Aligned_cols=220  Identities=17%  Similarity=0.251  Sum_probs=174.4

Q ss_pred             eeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--CeEEEeecCCeEEEEECCCCc--------eeeeeeccCceEE
Q 011978          216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGK--------LIRELKGHGHWVN  285 (473)
Q Consensus       216 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~--------~~~~~~~~~~~v~  285 (473)
                      |+.++.+++|+......+..+.+|...|.+++|+++  ..|++|+.|++|++||+.++.        .+..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            556788999998887888889999999999999985  479999999999999998642        2345678888899


Q ss_pred             EEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeE
Q 011978          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (473)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  365 (473)
                      +++++|..                                   ...+++++.|+++++||+....... .+ .|...|.+
T Consensus       130 sVaf~P~g-----------------------------------~~iLaSgS~DgtIrIWDl~tg~~~~-~i-~~~~~V~S  172 (568)
T PTZ00420        130 IIDWNPMN-----------------------------------YYIMCSSGFDSFVNIWDIENEKRAF-QI-NMPKKLSS  172 (568)
T ss_pred             EEEECCCC-----------------------------------CeEEEEEeCCCeEEEEECCCCcEEE-EE-ecCCcEEE
Confidence            99888752                                   1246789999999999987654322 22 35567999


Q ss_pred             EEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE-----EEEecCCCEEEEEeCCC----cEEEEECCC-Cc
Q 011978          366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ-----ISWSADSRLLLSGSKDS----TLKVWDIRT-QK  435 (473)
Q Consensus       366 v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~-----v~~sp~g~~l~s~s~Dg----~i~iwd~~~-~~  435 (473)
                      ++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+.+..     ..|++++.+|++++.|+    .|+|||++. .+
T Consensus       173 lswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~  252 (568)
T PTZ00420        173 LKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS  252 (568)
T ss_pred             EEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence            999999999999999999999999999999999999886543     33568999999988774    799999985 44


Q ss_pred             eeecc--cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          436 LKQDL--PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       436 ~~~~~--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .+..+  ..+...+......++|.++++|+.|+.|++|.
T Consensus       253 pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e  291 (568)
T PTZ00420        253 ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ  291 (568)
T ss_pred             ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence            44433  33334444444456689999999999999995

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.9e-26  Score=191.02  Aligned_cols=242  Identities=21%  Similarity=0.342  Sum_probs=197.4

Q ss_pred             eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (473)
Q Consensus       142 ~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~  221 (473)
                      +++.+..|.+.+++++.+  |.++++|+.|-+|+|||+.+..... .+..|.+.|+++.|.+..   ....+++|+.||.
T Consensus        35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg-~ll~HagsitaL~F~~~~---S~shLlS~sdDG~  108 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG-ILLSHAGSITALKFYPPL---SKSHLLSGSDDGH  108 (362)
T ss_pred             ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc-ceeccccceEEEEecCCc---chhheeeecCCCc
Confidence            466778999999999985  8999999999999999998776554 466789999999987632   1237999999999


Q ss_pred             EEEEECCCCeEEEEecCccccEEEEEecCCCeE-EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978          222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (473)
Q Consensus       222 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (473)
                      |.+|+.....++..+++|...|+.++.+|.+.| ++.+.|+.+++|++.+|+.-..++.                     
T Consensus       109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L---------------------  167 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL---------------------  167 (362)
T ss_pred             EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc---------------------
Confidence            999999999999999999999999999999865 5789999999999987764221100                     


Q ss_pred             cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC
Q 011978          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (473)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~  380 (473)
                                                                                 ......|.|+|.|.+++.++.
T Consensus       168 -----------------------------------------------------------~~~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  168 -----------------------------------------------------------KNKATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             -----------------------------------------------------------CCcceeeEEcCCCCEEEEEec
Confidence                                                                       001223789999999988887


Q ss_pred             CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEE--eeCCCE
Q 011978          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW--SPDGEK  458 (473)
Q Consensus       381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~--s~d~~~  458 (473)
                      + .|-+|.+.+.+....+... -.+.++.|- ++..|++|..|+.|.+||-.+......+.+|..+|-++.+  .|++.+
T Consensus       189 ~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~  265 (362)
T KOG0294|consen  189 N-KIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEY  265 (362)
T ss_pred             c-EEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceE
Confidence            6 4899988877655444322 346666664 5678999999999999999998888899999999988873  567889


Q ss_pred             EEEEeCCCcEEecc
Q 011978          459 VASGGKDRVLKLWM  472 (473)
Q Consensus       459 l~s~~~D~~i~~w~  472 (473)
                      |+|+|+||.|++|+
T Consensus       266 lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  266 LVTASSDGFIKVWD  279 (362)
T ss_pred             EEEeccCceEEEEE
Confidence            99999999999997

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=7.5e-27  Score=207.29  Aligned_cols=280  Identities=20%  Similarity=0.417  Sum_probs=223.1

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC---ceeEEE--cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~---~~~~~~--~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      ..|..-|-++.+|...++++||+ .|.|+|||+...   .++..+  ....+.|.++...|||+.|++|+.-.++.|||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            35888999999999999999985 578999998643   233333  334678999999999999999999999999998


Q ss_pred             CCCccc-cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEe
Q 011978          180 QTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTG  257 (473)
Q Consensus       180 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~  257 (473)
                      ..-... ...+....-...+++     .+++.+...+|..||.|.|||+.+...+..+.||...+.|+..+.||. |.+|
T Consensus       495 AapTprikaeltssapaCyALa-----~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG  569 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALA-----ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG  569 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhh-----cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC
Confidence            754321 111111111222333     344667788899999999999999999999999999999999999995 9999


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      +-|+++|-||+++++.+.+..                                                           
T Consensus       570 GlDntvRcWDlregrqlqqhd-----------------------------------------------------------  590 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQQHD-----------------------------------------------------------  590 (705)
T ss_pred             CCccceeehhhhhhhhhhhhh-----------------------------------------------------------
Confidence            999999999999876443210                                                           


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL  417 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l  417 (473)
                                           ....|.++-++|++.+||.|-..+.+.|-..... ..+.+.-|...|.++.|++-|+++
T Consensus       591 ---------------------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  591 ---------------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             ---------------------hhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCcee
Confidence                                 0134677888999999999999999988876543 345556689999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++.+.|+.+..|...-|..+...+ ..+.|++++.|.|.+++++|+.|+...||.
T Consensus       649 vStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             eecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence            999999999999887777666655 457899999999999999999998887764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.5e-26  Score=212.09  Aligned_cols=289  Identities=25%  Similarity=0.349  Sum_probs=224.0

Q ss_pred             cCCcccEEEEEECCC-----------CCeEEEEeCCCeEEEEeCCCCce--e----------------------------
Q 011978          105 AGHTEAVLSVAFSPD-----------GRQLASGSGDTTVRLWDLNTQTP--M----------------------------  143 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~-----------~~~lat~s~d~~i~iwd~~~~~~--~----------------------------  143 (473)
                      .-|+..|+.+.--|-           ..-+.|++.|++||+||+.....  +                            
T Consensus       366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~  445 (1080)
T KOG1408|consen  366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA  445 (1080)
T ss_pred             eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence            358888888876551           12478999999999999864210  0                            


Q ss_pred             --E-----EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe
Q 011978          144 --F-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA  216 (473)
Q Consensus       144 --~-----~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~  216 (473)
                        +     ..-+....+.+++.||+|++|++|..-|++++|+++.-+... .+..|...|.++.|+-...  ....++++
T Consensus       446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~-~~eAHesEilcLeyS~p~~--~~kLLASa  522 (1080)
T KOG1408|consen  446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC-FMEAHESEILCLEYSFPVL--TNKLLASA  522 (1080)
T ss_pred             CcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh-heecccceeEEEeecCchh--hhHhhhhc
Confidence              0     001224579999999999999999999999999998766443 5788999999999875333  23578999


Q ss_pred             eCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCC---eEEEeecCCeEEEEECCCCceeeeeeccC-----ceEEEE
Q 011978          217 SKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKGHG-----HWVNSL  287 (473)
Q Consensus       217 s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----~~v~~~  287 (473)
                      +.|+.|.++|+... ..+.++.+|...|+++.|..+|   .+++++.|+.|.+--.+.......+..|.     ..+..+
T Consensus       523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm  602 (1080)
T KOG1408|consen  523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM  602 (1080)
T ss_pred             cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence            99999999998754 4556788999999999997665   58999999988654333221122222221     223444


Q ss_pred             EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee--cCcccceeE
Q 011978          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNH  365 (473)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~  365 (473)
                      ++.|.                                    ...+++++.|+.|+||++..+++.+...  .+|.+..-.
T Consensus       603 ~Vdp~------------------------------------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK  646 (1080)
T KOG1408|consen  603 AVDPT------------------------------------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK  646 (1080)
T ss_pred             eeCCC------------------------------------cceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence            44332                                    3468999999999999998877655443  345567778


Q ss_pred             EEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       366 v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      +...|.|-|||+...|+++.++|+.+|+++....||...|+.+.|++|.++|++.+.||.|.||.+.
T Consensus       647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            9999999999999999999999999999999999999999999999999999999999999999875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=2.6e-25  Score=204.94  Aligned_cols=365  Identities=24%  Similarity=0.415  Sum_probs=249.3

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeE-------EEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-------KCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~-------~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i  174 (473)
                      +.+.||.+.|.++.|+|.+..|.++|.|+++.+|......-+.       ...+...+.....|+|++..+++-++.|-.
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            4456999999999999999999999999999999876543221       223445678899999999999999999999


Q ss_pred             EEeeCCCCc--cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC----eEEEEecCccccEEEEEe
Q 011978          175 QCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCVKW  248 (473)
Q Consensus       175 ~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~  248 (473)
                      ++|..++..  .....+.||.+.|..+.|.|     .+.++++.|.|.+-|++-.-.+    ..+..-.-|...++|+++
T Consensus       341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-----sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~  415 (764)
T KOG1063|consen  341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-----SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF  415 (764)
T ss_pred             EEEeccCccceeeccccccccccceeeeecC-----CCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence            999833221  22335789999999999998     4578999999999999865411    122222347778899998


Q ss_pred             cC-CCeEEEeecCCeEEEEECCCCce--e----e-eeecc-----CceEEEEEeccccee----eeccc----------c
Q 011978          249 GG-DGVIYTGSQDCTIKVWETTQGKL--I----R-ELKGH-----GHWVNSLALSTEYAL----RTGAF----------D  301 (473)
Q Consensus       249 ~~-~~~l~s~~~d~~i~~wd~~~~~~--~----~-~~~~~-----~~~v~~~~~~~~~~~----~~~~~----------~  301 (473)
                      -+ +-.+++|....-+|+|+....-.  +    . ...+.     +..|..+..+.....    ..+..          +
T Consensus       416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~  495 (764)
T KOG1063|consen  416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA  495 (764)
T ss_pred             ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence            76 55788999999999998764310  0    0 11111     111222222211111    00110          0


Q ss_pred             CCCcccCCH-HHHHHHH--Hhhhhccc-----------CCCCceEEEecCCc-----eEEEEeCCCCCCCeeeecCcccc
Q 011978          302 HTGKQYSSP-EEMKKAA--LERYNKIK-----------GNAPERLVSGSDDF-----TMFLWEPAVSKQPKTRMTGHQQL  362 (473)
Q Consensus       302 ~~~~~~~~~-~~~~~~~--~~~~~~~~-----------~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~  362 (473)
                      .......+| ++.....  .....+..           ....+.+++++...     .|++|+.....+.. .+.+|+-.
T Consensus       496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-~L~~HsLT  574 (764)
T KOG1063|consen  496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-ELEGHSLT  574 (764)
T ss_pred             CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-eecccceE
Confidence            000111111 1111111  11111111           22345566665543     48899977665443 78899999


Q ss_pred             eeEEEECCCCcEEEEEECCCcEEEEeCCCCce----EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ce
Q 011978          363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ--KL  436 (473)
Q Consensus       363 v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~----~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~--~~  436 (473)
                      |+.++|||||++|++.|.|+++.+|.......    ....+.|+.-|++..|+|++.++||+|.|.+|++|.....  +.
T Consensus       575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~  654 (764)
T KOG1063|consen  575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY  654 (764)
T ss_pred             EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh
Confidence            99999999999999999999999998754321    2336789999999999999999999999999999998766  33


Q ss_pred             ee--cccccCCCEEEEEEeeC-----CCEEEEEeCCCcEEecc
Q 011978          437 KQ--DLPGHADEVFAVDWSPD-----GEKVASGGKDRVLKLWM  472 (473)
Q Consensus       437 ~~--~~~~h~~~i~~l~~s~d-----~~~l~s~~~D~~i~~w~  472 (473)
                      +.  ....+...|++++|.|-     +..++.|-..|.|.+|.
T Consensus       655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR  697 (764)
T ss_pred             hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence            32  23357788999988753     22567777889999986

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=4.4e-24  Score=189.96  Aligned_cols=278  Identities=21%  Similarity=0.360  Sum_probs=204.9

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE---EcCC-CCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK---CTGH-KNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~---~~~~-~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      ......+.|....|+|.+..|+...+.+.+.+|+++++.....   +..+ ...|.|++|.++|+ +++|..+|.|.||+
T Consensus       195 ~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~  273 (626)
T KOG2106|consen  195 PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWS  273 (626)
T ss_pred             cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEe
Confidence            3344556788999999999888888899999999987653322   2222 36799999999985 88999999999999


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE--------------------------
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC--------------------------  232 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~--------------------------  232 (473)
                      ..+.+...+.. .|.+.|.++....      ...+++|+.|+.|..||-.-.+.                          
T Consensus       274 ~~~~~~~k~~~-aH~ggv~~L~~lr------~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGT  346 (626)
T KOG2106|consen  274 KGTNRISKQVH-AHDGGVFSLCMLR------DGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGT  346 (626)
T ss_pred             CCCceEEeEee-ecCCceEEEEEec------CccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEee
Confidence            97776665555 9999999887543      35788999999999998321110                          


Q ss_pred             --------------EEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeee
Q 011978          233 --------------VICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT  297 (473)
Q Consensus       233 --------------~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  297 (473)
                                    .....+|......++..++. ++++++.|+.+++|+  ..++..+. .-..+..+++++|.     
T Consensus       347 trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhps-----  418 (626)
T KOG2106|consen  347 TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPS-----  418 (626)
T ss_pred             ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCc-----
Confidence                          01123566666777777654 789999999999998  33443332 22344556666553     


Q ss_pred             ccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE
Q 011978          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS  377 (473)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las  377 (473)
                                                      ..++.|...|...+.|..... ....... ..++++++|+|+|.+||.
T Consensus       419 --------------------------------g~va~Gt~~G~w~V~d~e~~~-lv~~~~d-~~~ls~v~ysp~G~~lAv  464 (626)
T KOG2106|consen  419 --------------------------------GVVAVGTATGRWFVLDTETQD-LVTIHTD-NEQLSVVRYSPDGAFLAV  464 (626)
T ss_pred             --------------------------------ceEEEeeccceEEEEecccce-eEEEEec-CCceEEEEEcCCCCEEEE
Confidence                                            257888888999998876532 2222223 678999999999999999


Q ss_pred             EECCCcEEEEeCCCC-ceEEEee-CCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978          378 ASFDKSIKLWNGTTG-KFVAVFR-GHVGPVYQISWSADSRLLLSGSKDSTLKVWD  430 (473)
Q Consensus       378 gs~d~~v~lwd~~~~-~~~~~~~-~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd  430 (473)
                      |+.|+.|++|.+... ....... -|..+|+.+.||+|+++|.+-|.|-.|..|.
T Consensus       465 gs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  465 GSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             ecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            999999999987644 3333222 2347999999999999999999999999994

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.1e-25  Score=185.66  Aligned_cols=262  Identities=23%  Similarity=0.426  Sum_probs=189.9

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEECC--CCCeEEEEecCCeEEEe
Q 011978          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCW  177 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iw  177 (473)
                      ..+|.+-|.++.|.+-|+++|+|+.|++|+|||.+...    .....+.|.+.|..+.|.+  -|+.+|+++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            36899999999999999999999999999999975443    3445678999999999975  48999999999999999


Q ss_pred             eCCCCccccccCCCcC-CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--C-e
Q 011978          178 DPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--G-V  253 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~-~  253 (473)
                      .-+...     +..|. .++.                                   ..++......|+.+.|.|.  | .
T Consensus        89 EE~~~~-----~~~~~~~Wv~-----------------------------------~ttl~DsrssV~DV~FaP~hlGLk  128 (361)
T KOG2445|consen   89 EEQEKS-----EEAHGRRWVR-----------------------------------RTTLVDSRSSVTDVKFAPKHLGLK  128 (361)
T ss_pred             eecccc-----cccccceeEE-----------------------------------EEEeecCCcceeEEEecchhcceE
Confidence            754211     12221 1111                                   1123334567888999875  3 4


Q ss_pred             EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      +++++.||.+|||+...--.+....                                                       
T Consensus       129 lA~~~aDG~lRIYEA~dp~nLs~W~-------------------------------------------------------  153 (361)
T KOG2445|consen  129 LAAASADGILRIYEAPDPMNLSQWT-------------------------------------------------------  153 (361)
T ss_pred             EEEeccCcEEEEEecCCccccccch-------------------------------------------------------
Confidence            8899999999999875432211110                                                       


Q ss_pred             EecCCceEEEEeCCCCCC-CeeeecCcccceeEEEECCC---CcEEEEEECC-----CcEEEEeCCCC----ceEEEeeC
Q 011978          334 SGSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPD---GQWVASASFD-----KSIKLWNGTTG----KFVAVFRG  400 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~v~~sp~---g~~lasgs~d-----~~v~lwd~~~~----~~~~~~~~  400 (473)
                                  +....+ .......+.....|+.|+|.   .++||.|+.+     +.++||....+    ..+..+.+
T Consensus       154 ------------Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d  221 (361)
T KOG2445|consen  154 ------------LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD  221 (361)
T ss_pred             ------------hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence                        000000 00001123344567788873   5689988876     47889976543    24566789


Q ss_pred             CccCEEEEEEecCC----CEEEEEeCCCcEEEEECCCC--------------------ceeecccccCCCEEEEEEeeCC
Q 011978          401 HVGPVYQISWSADS----RLLLSGSKDSTLKVWDIRTQ--------------------KLKQDLPGHADEVFAVDWSPDG  456 (473)
Q Consensus       401 h~~~v~~v~~sp~g----~~l~s~s~Dg~i~iwd~~~~--------------------~~~~~~~~h~~~i~~l~~s~d~  456 (473)
                      |..+|++++|.|+-    .+||+++.|| |+||++...                    +.+..+.+|..+|..+.|+-.|
T Consensus       222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG  300 (361)
T KOG2445|consen  222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG  300 (361)
T ss_pred             CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence            99999999999953    4799999999 999998731                    1234577899999999999999


Q ss_pred             CEEEEEeCCCcEEeccC
Q 011978          457 EKVASGGKDRVLKLWMG  473 (473)
Q Consensus       457 ~~l~s~~~D~~i~~w~~  473 (473)
                      ..|+|.|.||.+|+|++
T Consensus       301 tiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  301 TILSSTGDDGCVRLWKA  317 (361)
T ss_pred             eEEeecCCCceeeehhh
Confidence            99999999999999974

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=216.54  Aligned_cols=277  Identities=20%  Similarity=0.368  Sum_probs=212.7

Q ss_pred             EEEEEECCCCCeEEEEecCCeEEEeeCCCCc--cccccCCCc----CCcEEEEEeceeccCCCCceEEEeeCCCcEEEEE
Q 011978          153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGK--PSGNPLSGH----KKWITGISWEPVHLNAPCRRFVSASKDGDARIWD  226 (473)
Q Consensus       153 v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~----~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd  226 (473)
                      ..++..+++-.+|+.++. ..+.+|......  .......+.    .-....+.|..    ...+.++|++..|.|.+||
T Consensus        42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~----~~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ----LYSNLIATCSTNGVISVWD  116 (839)
T ss_pred             cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhccccc----chhhhheeecCCCcEEEEe
Confidence            445556677777776664 345555443211  100000011    11233456652    2456899999999999999


Q ss_pred             CCC---CeEEEEecCccccEEEEEecCC--CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978          227 VSL---RKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (473)
Q Consensus       227 ~~~---~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (473)
                      +..   .+.+..+..|...+.++.|++-  .+|++|++||+|+.||++..+...++.+....|..+.++|.+        
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~--------  188 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY--------  188 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC--------
Confidence            987   6777789999999999999864  489999999999999999988888888777778888887652        


Q ss_pred             CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC
Q 011978          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (473)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d  381 (473)
                                                 +..++++.+.|.+++||++...+....+..|.+.|.|+.|+|++.+|||||.|
T Consensus       189 ---------------------------~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD  241 (839)
T KOG0269|consen  189 ---------------------------GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD  241 (839)
T ss_pred             ---------------------------CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC
Confidence                                       45689999999999999999988889999999999999999999999999999


Q ss_pred             CcEEEEeCCCCceEEEeeC-CccCEEEEEEecCCC-EEEEEeC--CCcEEEEECCCC-ceeecccccCCCEEEEEEee-C
Q 011978          382 KSIKLWNGTTGKFVAVFRG-HVGPVYQISWSADSR-LLLSGSK--DSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSP-D  455 (473)
Q Consensus       382 ~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~g~-~l~s~s~--Dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~-d  455 (473)
                      +.|+|||..+++.-....- -..+|.+|+|-|+.+ +||+++.  |-.|+|||++.. -...++..|.+.++.++|-. |
T Consensus       242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d  321 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGD  321 (839)
T ss_pred             ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCC
Confidence            9999999986653222222 346899999999764 6888774  778999999764 34567888999999999964 5


Q ss_pred             CCEEEEEeCCCcEE
Q 011978          456 GEKVASGGKDRVLK  469 (473)
Q Consensus       456 ~~~l~s~~~D~~i~  469 (473)
                      -..|-+++.|+++.
T Consensus       322 ~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  322 RINLWSCSKDGTVL  335 (839)
T ss_pred             ceeeEeecCccHHH
Confidence            56788999998763

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4e-26  Score=201.20  Aligned_cols=229  Identities=28%  Similarity=0.405  Sum_probs=182.2

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~  187 (473)
                      .++|.|++-+|+|.+|+.|...+.|++|.+.+|..+..+.+|-..|+|+.|+.||.+|++|+.||.|.+|.+.+      
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------  154 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------  154 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------
Confidence            45799999999999999999999999999999998888899999999999999999999999999999998632      


Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC---CeEEEeecCCeEE
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD---GVIYTGSQDCTIK  264 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~~~d~~i~  264 (473)
                                               ++....++        +-+.+..+..|..+|+.+.....   ..++|++.|.+++
T Consensus       155 -------------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k  201 (476)
T KOG0646|consen  155 -------------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK  201 (476)
T ss_pred             -------------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence                                     12222222        22344556789999999888654   4799999999999


Q ss_pred             EEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978          265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (473)
Q Consensus       265 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  344 (473)
                      +||+..|.++.++..                                                                 
T Consensus       202 ~wdlS~g~LLlti~f-----------------------------------------------------------------  216 (476)
T KOG0646|consen  202 LWDLSLGVLLLTITF-----------------------------------------------------------------  216 (476)
T ss_pred             EEEeccceeeEEEec-----------------------------------------------------------------
Confidence            999998876544321                                                                 


Q ss_pred             eCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC----------------CceEEEeeCCcc--CEE
Q 011978          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------------GKFVAVFRGHVG--PVY  406 (473)
Q Consensus       345 d~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~----------------~~~~~~~~~h~~--~v~  406 (473)
                                     +..+.+++.+|.++.+..|+.+|.|.+.++..                +..+..+.||.+  .|+
T Consensus       217 ---------------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT  281 (476)
T KOG0646|consen  217 ---------------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT  281 (476)
T ss_pred             ---------------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence                           12355666666666677777777666655432                234567789988  999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeC
Q 011978          407 QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD  455 (473)
Q Consensus       407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d  455 (473)
                      |++.+-||..|++|+.||.|.|||+.+.+.++++..-.++|+.+.+.|=
T Consensus       282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            9999999999999999999999999999888887655678888888554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.7e-24  Score=197.95  Aligned_cols=328  Identities=20%  Similarity=0.290  Sum_probs=242.6

Q ss_pred             ccccccCCc-ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978          100 CSATIAGHT-EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus       100 ~~~~~~gh~-~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      +...+.|+. ..|.+++|+ ++.+|++.+.+|.|.-||+.+.++........+.|++++.+|.+..++.|+.||.++..+
T Consensus        60 ~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s  138 (691)
T KOG2048|consen   60 LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS  138 (691)
T ss_pred             eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence            344555655 469999999 566788999999999999999999988888889999999999999999999999888888


Q ss_pred             CCCCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--------cCccccEEEEEec
Q 011978          179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--------SGHTLAVTCVKWG  249 (473)
Q Consensus       179 ~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--------~~h~~~v~~~~~~  249 (473)
                      ...++... ..+...++++.+++|+|     +..++++|+.||.|++||...+..+...        ++....|+++.|-
T Consensus       139 ~~p~~I~~~r~l~rq~sRvLslsw~~-----~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L  213 (691)
T KOG2048|consen  139 IGPDKITYKRSLMRQKSRVLSLSWNP-----TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL  213 (691)
T ss_pred             cCCceEEEEeecccccceEEEEEecC-----CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe
Confidence            87765432 23444568899999988     4457999999999999999988776621        1234567888888


Q ss_pred             CCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          250 GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       250 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      .++.|++|..-|+|++||...|.+++.+..|...|.+++.+++                                    .
T Consensus       214 rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~------------------------------------~  257 (691)
T KOG2048|consen  214 RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN------------------------------------E  257 (691)
T ss_pred             ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC------------------------------------C
Confidence            8999999999999999999999999999999999999988764                                    3


Q ss_pred             ceEEEecCCceEEEEeCCCCCC---CeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC---------------
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT---------------  391 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~---------------  391 (473)
                      +.+++++-|+.+..+.....+.   .......|...+++++..++  .+.+|+.|.++.+-..+.               
T Consensus       258 d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~  335 (691)
T KOG2048|consen  258 DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPAS  335 (691)
T ss_pred             CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhcccccccc
Confidence            4678888888888776554433   22334567777888888766  677777777666543211               


Q ss_pred             ---------------------------C----c-----eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC--
Q 011978          392 ---------------------------G----K-----FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT--  433 (473)
Q Consensus       392 ---------------------------~----~-----~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~--  433 (473)
                                                 .    +     +++........|.+.+.||+|++++.+.- ...+||.+..  
T Consensus       336 ~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~  414 (691)
T KOG2048|consen  336 DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDP  414 (691)
T ss_pred             ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCc
Confidence                                       0    0     00001111235788899999999987751 1233332221  


Q ss_pred             ----------------------------------------------C--ceeecc--cccCCCEEEEEEeeCCCEEEEEe
Q 011978          434 ----------------------------------------------Q--KLKQDL--PGHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       434 ----------------------------------------------~--~~~~~~--~~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                                                                    .  +....+  .+....|..+..||||++||..+
T Consensus       415 ~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~  494 (691)
T KOG2048|consen  415 NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS  494 (691)
T ss_pred             ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe
Confidence                                                          0  000001  11235688899999999999999


Q ss_pred             CCCcEEecc
Q 011978          464 KDRVLKLWM  472 (473)
Q Consensus       464 ~D~~i~~w~  472 (473)
                      .++.|.+|+
T Consensus       495 t~g~I~v~n  503 (691)
T KOG2048|consen  495 TRGQIFVYN  503 (691)
T ss_pred             ccceEEEEE
Confidence            999999986

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=2e-25  Score=183.22  Aligned_cols=240  Identities=23%  Similarity=0.359  Sum_probs=196.2

Q ss_pred             EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (473)
Q Consensus       145 ~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i  224 (473)
                      .+++|+.+++.+.++.+|.+|++++.|.+..+|-..+|+.+. .+.+|.+.|-++...-     +...+++|+.|.++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-ty~GHtGavW~~Did~-----~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-TYDGHTGAVWCCDIDW-----DSKHLITGSADQTAKL   78 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee-eecCCCceEEEEEecC-----CcceeeeccccceeEE
Confidence            467999999999999999999999999999999988888766 4789999998876432     4578999999999999


Q ss_pred             EECCCCeEEEEecCccccEEEEEecCCCeEEEeecC------CeEEEEECCCCceeeeeeccCceEEEEEecccceeeec
Q 011978          225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG  298 (473)
Q Consensus       225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  298 (473)
                      ||+++|+++..++- ..+|..+.|+.+|.++..+.|      +.|.++|++....-                        
T Consensus        79 WDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~------------------------  133 (327)
T KOG0643|consen   79 WDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD------------------------  133 (327)
T ss_pred             EEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh------------------------
Confidence            99999999988764 457889999988865555544      34555554421100                        


Q ss_pred             cccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE
Q 011978          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA  378 (473)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg  378 (473)
                                                                      ...+.|..++..+...++.+-|+|-+++|++|
T Consensus       134 ------------------------------------------------~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G  165 (327)
T KOG0643|consen  134 ------------------------------------------------IDSEEPYLKIPTPDSKITSALWGPLGETIIAG  165 (327)
T ss_pred             ------------------------------------------------hcccCceEEecCCccceeeeeecccCCEEEEe
Confidence                                                            00122334444556778889999999999999


Q ss_pred             ECCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC
Q 011978          379 SFDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE  457 (473)
Q Consensus       379 s~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~  457 (473)
                      ..||.|..||.++|+ .+..-+.|...|++++++||..+++++|.|.+-++||+.+...++++. -..+|++.+++|-..
T Consensus       166 he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d  244 (327)
T KOG0643|consen  166 HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLD  244 (327)
T ss_pred             cCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccc
Confidence            999999999999985 455667899999999999999999999999999999999998888876 357899999999988


Q ss_pred             EEEEEeC
Q 011978          458 KVASGGK  464 (473)
Q Consensus       458 ~l~s~~~  464 (473)
                      +++.||.
T Consensus       245 ~VilgGG  251 (327)
T KOG0643|consen  245 HVILGGG  251 (327)
T ss_pred             eEEecCC
Confidence            8887765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=3.4e-26  Score=203.79  Aligned_cols=243  Identities=24%  Similarity=0.345  Sum_probs=181.3

Q ss_pred             EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc----ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC
Q 011978          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD  219 (473)
Q Consensus       144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d  219 (473)
                      ..+++|...|+++++.|.|..+++|+.|-.|++||.+....    ..+....-...|+++.|++     .+.+|+..+..
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-----Tg~~iLvvsg~  235 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-----TGDQILVVSGS  235 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-----CCCeEEEEecC
Confidence            45778999999999999999999999999999999875432    2222333445678888877     45688888888


Q ss_pred             CcEEEEECCCCeEE------------EEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEE
Q 011978          220 GDARIWDVSLRKCV------------ICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVN  285 (473)
Q Consensus       220 g~i~iwd~~~~~~~------------~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~  285 (473)
                      ...+++|-.....+            ...+||...++|.+|+|..  .+++++.||++|+||+..-+...++-       
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi-------  308 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI-------  308 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE-------
Confidence            89999985543322            2236899999999999875  69999999999999987543211110       


Q ss_pred             EEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeE
Q 011978          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (473)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  365 (473)
                                                                                 ....       ..+..-.+++
T Consensus       309 -----------------------------------------------------------k~k~-------~~g~Rv~~ts  322 (641)
T KOG0772|consen  309 -----------------------------------------------------------KTKP-------AGGKRVPVTS  322 (641)
T ss_pred             -----------------------------------------------------------eecc-------CCCcccCcee
Confidence                                                                       0000       0111234678


Q ss_pred             EEECCCCcEEEEEECCCcEEEEeCCCCc---eEEEeeCCcc--CEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeec
Q 011978          366 VYFSPDGQWVASASFDKSIKLWNGTTGK---FVAVFRGHVG--PVYQISWSADSRLLLSGSKDSTLKVWDIRTQK-LKQD  439 (473)
Q Consensus       366 v~~sp~g~~lasgs~d~~v~lwd~~~~~---~~~~~~~h~~--~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~-~~~~  439 (473)
                      .+|+|||++||+|..||+|.+|+..+..   ....-.+|..  .|++|.||+||++|++-+.|+++++||++..+ .+..
T Consensus       323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~  402 (641)
T KOG0772|consen  323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV  402 (641)
T ss_pred             eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence            8999999999999999999999975432   2334467877  89999999999999999999999999998643 3333


Q ss_pred             ccccC--CCEEEEEEeeCCCEEEEEeC
Q 011978          440 LPGHA--DEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       440 ~~~h~--~~i~~l~~s~d~~~l~s~~~  464 (473)
                      ..+-.  -+-+.++||||.+.|++|+.
T Consensus       403 ~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  403 RTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             hcCCCccCCCCccccCCCceEEEeccc
Confidence            33221  23467899999999998864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.2e-25  Score=217.75  Aligned_cols=268  Identities=28%  Similarity=0.413  Sum_probs=200.9

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC----------C--------ceeEEEcCCCCCEEEEEECC
Q 011978           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------Q--------TPMFKCTGHKNWVLCIAWSA  160 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~----------~--------~~~~~~~~~~~~v~~l~~s~  160 (473)
                      +...+...|.+.|+|+.|+|||++||+||+|+.|.||....          +        +....+.+|...|..++|+|
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            34455677999999999999999999999999999999762          0        13456789999999999999


Q ss_pred             CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc
Q 011978          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT  240 (473)
Q Consensus       161 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~  240 (473)
                      ++.+|++++.|++|.+||..+.+ ....+.+|...|.++.|.|.     +.+|++-+.|+++++|+..+..+.+.+.++.
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF~-~~~vl~~H~s~VKGvs~DP~-----Gky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTFE-LLKVLRGHQSLVKGVSWDPI-----GKYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             CccEEEEecccceEEEEccccce-eeeeeecccccccceEECCc-----cCeeeeecCCceEEEEEcccceeeEeeccch
Confidence            99999999999999999999984 44568999999999999984     5799999999999999987766666555443


Q ss_pred             ------ccEEEEEecCCCe-EEEee----cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCC
Q 011978          241 ------LAVTCVKWGGDGV-IYTGS----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (473)
Q Consensus       241 ------~~v~~~~~~~~~~-l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  309 (473)
                            .....+.|+|||. |++.-    .-.++.|.+-.+-+.-..+-+|..++..+.++|...-+.            
T Consensus       214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~------------  281 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERN------------  281 (942)
T ss_pred             hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccc------------
Confidence                  2456789999995 44431    234566666655555566667777777776665310000            


Q ss_pred             HHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (473)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~  389 (473)
                                  .        .      +|+        ..++           .     ..-..+|+||.|++|.||..
T Consensus       282 ------------~--------~------ng~--------~~~~-----------~-----~~y~i~AvgSqDrSlSVW~T  311 (942)
T KOG0973|consen  282 ------------N--------K------NGT--------STQP-----------N-----CYYCIAAVGSQDRSLSVWNT  311 (942)
T ss_pred             ------------c--------c------cCC--------ccCC-----------C-----cceEEEEEecCCccEEEEec
Confidence                        0        0      000        0000           0     00125889999999999998


Q ss_pred             CCCceEEEee-CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978          390 TTGKFVAVFR-GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       390 ~~~~~~~~~~-~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                      ...+++.... -....|.+++|+|||..|..+|.||+|.+..+...
T Consensus       312 ~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  312 ALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             CCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            7777654432 23468999999999999999999999999988753

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.5e-27  Score=220.61  Aligned_cols=254  Identities=27%  Similarity=0.520  Sum_probs=215.4

Q ss_pred             eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE
Q 011978          164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV  243 (473)
Q Consensus       164 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v  243 (473)
                      .++....+-.+++|+.+.       ...|...+.++...     ...+.+++|+.|..+-+|.+....++..+.+|...|
T Consensus         6 ~~m~~~~~t~Lr~~~~~~-------~~~hsaav~~lk~~-----~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespI   73 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTRE-------FVAHSAAVGCLKIR-----KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPI   73 (825)
T ss_pred             ccceeeeeeccccccchh-------hhhhhhhhceeeee-----ccceeeccCCCceeeccccccCCchhheeeccCCcc
Confidence            344555566778888653       33455555555431     234567889999999999998888888899999999


Q ss_pred             EEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978          244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (473)
Q Consensus       244 ~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (473)
                      .|+.|+.+. +|++|+.+|+|++||++.++.++++.+|...+.++.++|-.                             
T Consensus        74 eSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-----------------------------  124 (825)
T KOG0267|consen   74 ESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-----------------------------  124 (825)
T ss_pred             eeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-----------------------------
Confidence            999999765 67889999999999999999999999999999999887742                             


Q ss_pred             cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc
Q 011978          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV  402 (473)
Q Consensus       323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~  402 (473)
                             ++.++|+.|..+.+||.... .+.....+|...+.+++|+|+|++++.|+.|.++++||...|+.+..|+.|.
T Consensus       125 -------~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e  196 (825)
T KOG0267|consen  125 -------EFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE  196 (825)
T ss_pred             -------EEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccc
Confidence                   34678999999999998643 3445566799999999999999999999999999999999999999999999


Q ss_pred             cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          403 GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       403 ~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      +.+.++.|+|..-++++||.|++|++||+++.+.+.........|.++.|+||++.+.+|..+.
T Consensus       197 ~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  197 GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            9999999999999999999999999999999888877777778899999999999998887654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.4e-26  Score=190.09  Aligned_cols=253  Identities=29%  Similarity=0.469  Sum_probs=205.3

Q ss_pred             cccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeC------CC-------------------------------
Q 011978           97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL------NT-------------------------------  139 (473)
Q Consensus        97 ~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~------~~-------------------------------  139 (473)
                      ..+|..++.||.+.|++++|++.+.+++++++|++..||..      ..                               
T Consensus       179 sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~  258 (481)
T KOG0300|consen  179 SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG  258 (481)
T ss_pred             cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence            46788999999999999999999999999999999999962      10                               


Q ss_pred             ---CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe
Q 011978          140 ---QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA  216 (473)
Q Consensus       140 ---~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~  216 (473)
                         ..|+..+++|...|.+..|-..|+++++++.|.+-.+||+++|... .++.||....+.+.-+|     ..+..++.
T Consensus       259 ~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v-~~LtGHd~ELtHcstHp-----tQrLVvTs  332 (481)
T KOG0300|consen  259 HTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV-NILTGHDSELTHCSTHP-----TQRLVVTS  332 (481)
T ss_pred             ceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee-ccccCcchhccccccCC-----cceEEEEe
Confidence               0145667899999999999999999999999999999999999865 57899999888876655     34678899


Q ss_pred             eCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978          217 SKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (473)
Q Consensus       217 s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (473)
                      +.|-+.++||++.. ..+..|.||...|+++.|+-+..+++|+.|.+|++||+++-+.         +            
T Consensus       333 SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs---------p------------  391 (481)
T KOG0300|consen  333 SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS---------P------------  391 (481)
T ss_pred             ccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC---------c------------
Confidence            99999999999843 4567889999999999999988999999999999999875321         0            


Q ss_pred             eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE
Q 011978          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV  375 (473)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l  375 (473)
                                                          +++--                      -...++.++++..+..|
T Consensus       392 ------------------------------------lATIR----------------------tdS~~NRvavs~g~~iI  413 (481)
T KOG0300|consen  392 ------------------------------------LATIR----------------------TDSPANRVAVSKGHPII  413 (481)
T ss_pred             ------------------------------------ceeee----------------------cCCccceeEeecCCceE
Confidence                                                11100                      01245667788778888


Q ss_pred             EEEECCCcEEEEeCCCCceEE----EeeCCccCEEEEEEecCC--CEEEEEeCCCcEEEEECCCC
Q 011978          376 ASASFDKSIKLWNGTTGKFVA----VFRGHVGPVYQISWSADS--RLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       376 asgs~d~~v~lwd~~~~~~~~----~~~~h~~~v~~v~~sp~g--~~l~s~s~Dg~i~iwd~~~~  434 (473)
                      |.-..++.|++||+....+..    .-++|...|+|++|..+-  .-|.+++.|..+.-|.+...
T Consensus       414 AiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  414 AIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             EeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            888888999999987544322    336899999999998643  45889999999999998653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.5e-25  Score=194.25  Aligned_cols=281  Identities=15%  Similarity=0.275  Sum_probs=218.9

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeCCCCcc
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKP  184 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~~~~~~  184 (473)
                      .+.|+++.|+|....|.+|+.|++++||.+..+.  .+..+.--..+|.+.+|.|+|. .+++++.....+.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            4689999999999999999999999999986543  3344333457899999999999 888999999999999998764


Q ss_pred             cc-ccCCCcCC-cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC
Q 011978          185 SG-NPLSGHKK-WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC  261 (473)
Q Consensus       185 ~~-~~~~~~~~-~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~  261 (473)
                      .. .+..++.. .+.....+     .++..++..|..|.|.+.-..++..+..++ -.+.|..++|++++ .|++++.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVS-----hd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~G  366 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVS-----HDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTG  366 (514)
T ss_pred             ccccCCCCcccchhheeEec-----CCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCc
Confidence            32 12333332 22222222     355688999999999999888887776654 34578899999888 478888999


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      .|.+||+++..+++.+...+                                                          .+
T Consensus       367 eV~v~nl~~~~~~~rf~D~G----------------------------------------------------------~v  388 (514)
T KOG2055|consen  367 EVYVWNLRQNSCLHRFVDDG----------------------------------------------------------SV  388 (514)
T ss_pred             eEEEEecCCcceEEEEeecC----------------------------------------------------------cc
Confidence            99999999877666543211                                                          10


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC------CceEEEeeCCccCEEEEEEecCCC
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT------GKFVAVFRGHVGPVYQISWSADSR  415 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~------~~~~~~~~~h~~~v~~v~~sp~g~  415 (473)
                                          .-++++.+++|.|||+||..|.|.|||..+      .+++..+..-...|+++.|+||++
T Consensus       389 --------------------~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q  448 (514)
T KOG2055|consen  389 --------------------HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ  448 (514)
T ss_pred             --------------------ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence                                124678889999999999999999999653      355666666667899999999999


Q ss_pred             EEEEEeC--CCcEEEEECCCCceeecccccC---CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          416 LLLSGSK--DSTLKVWDIRTQKLKQDLPGHA---DEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       416 ~l~s~s~--Dg~i~iwd~~~~~~~~~~~~h~---~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .||.+|.  +..+++-.+.+......++...   +.|++++|||.|.+||.|-.+|++.+|.
T Consensus       449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence            9988874  6789999998876666555432   4689999999999999999999999995

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.9e-24  Score=170.02  Aligned_cols=241  Identities=27%  Similarity=0.446  Sum_probs=192.5

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce-----eEEEcCCCCCEEEEEECCC----CCeEEEEe-cCCeE
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-----MFKCTGHKNWVLCIAWSAD----GKHLVSGS-KAGEL  174 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~s~d----g~~l~s~~-~dg~i  174 (473)
                      +-|.+.|.|.+|+|+|+++|+|+.|++|++--.+...+     -..+.-|.+.|..++|..+    |..|++++ .|..|
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            45899999999999999999999999999987654322     2345668999999999643    45666654 46778


Q ss_pred             EEeeCCCCccccccCCCcCCcEEEE-EeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC-------ccccEEEE
Q 011978          175 QCWDPQTGKPSGNPLSGHKKWITGI-SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCV  246 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i-~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~~  246 (473)
                      ++=|..+|... ..+.+|++.|.++ .|+       +.+|++|+.|.+|++||++-..|+.++..       ...+|.++
T Consensus       166 y~tdc~~g~~~-~a~sghtghilalyswn-------~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav  237 (350)
T KOG0641|consen  166 YITDCGRGQGF-HALSGHTGHILALYSWN-------GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV  237 (350)
T ss_pred             EEeecCCCCcc-eeecCCcccEEEEEEec-------CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence            88888777654 4578999998886 454       35899999999999999998888876532       23578888


Q ss_pred             EecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978          247 KWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (473)
Q Consensus       247 ~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
                      +..|.|. |++|-.|....+||++.++.++.+.                                               
T Consensus       238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-----------------------------------------------  270 (350)
T KOG0641|consen  238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-----------------------------------------------  270 (350)
T ss_pred             EECCCcceeeeccCCCceEEEEeeCCceeeeeC-----------------------------------------------
Confidence            9998884 6788889999999988877665443                                               


Q ss_pred             CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC----ceEEEeeCC
Q 011978          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG----KFVAVFRGH  401 (473)
Q Consensus       326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~----~~~~~~~~h  401 (473)
                                                      .|...|+|+.|+|...|+.+++.|..|++-|++..    -.+.+...|
T Consensus       271 --------------------------------phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh  318 (350)
T KOG0641|consen  271 --------------------------------PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH  318 (350)
T ss_pred             --------------------------------CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec
Confidence                                            34566889999999999999999999999998632    234455679


Q ss_pred             ccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      ...+..+.|+|..--+++.|.|.++.+|-+.
T Consensus       319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  319 KDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cCceEEEEecCccceeeeccCcceEEEeccC
Confidence            9999999999999889999999999999653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.7e-24  Score=204.36  Aligned_cols=283  Identities=17%  Similarity=0.322  Sum_probs=218.4

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      .+|+.+-+.+.|.|+|.+|++++.||.|++|+.... .....+.-+...|.+++-  ++.+|++|+.+++|.+|....+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence            368899999999999999999999999999987554 211112226667777775  45699999999999999987765


Q ss_pred             cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCe
Q 011978          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT  262 (473)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~  262 (473)
                      ... .+...+-++..++++.     ++.+++.||.|-.|++-+.........+.+|.++|.++.|+|++ .|++.+.||.
T Consensus        88 ~~~-iL~Rftlp~r~~~v~g-----~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~  161 (933)
T KOG1274|consen   88 EDT-ILARFTLPIRDLAVSG-----SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK  161 (933)
T ss_pred             ccc-eeeeeeccceEEEEec-----CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence            432 2333445566666543     66789999999999999999999999999999999999999987 5778899999


Q ss_pred             EEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (473)
Q Consensus       263 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  342 (473)
                      +++||+.++.+..++.+-..         +                                                  
T Consensus       162 v~iw~~~~~~~~~tl~~v~k---------~--------------------------------------------------  182 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDK---------D--------------------------------------------------  182 (933)
T ss_pred             EEEEEcccchhhhhcccCCc---------c--------------------------------------------------
Confidence            99999998876655432100         0                                                  


Q ss_pred             EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC--CccCEEEEEEecCCCEEEEE
Q 011978          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG--HVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~  420 (473)
                       .+           ......+..++|+|+|..+|..+.|+.|++|+...++....++.  +...+..+.|+|.|+|||++
T Consensus       183 -n~-----------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs  250 (933)
T KOG1274|consen  183 -NE-----------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS  250 (933)
T ss_pred             -cc-----------ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeee
Confidence             00           00023466789999988889899999999999999988877764  44559999999999999999


Q ss_pred             eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       421 s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                      +.||.|-|||..+-..    ......|.+++|.|+++.+-.-..-|..-+
T Consensus       251 ~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~  296 (933)
T KOG1274|consen  251 TLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGV  296 (933)
T ss_pred             ccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccccc
Confidence            9999999999987221    223467999999999887755554444433

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=4.5e-23  Score=189.78  Aligned_cols=286  Identities=17%  Similarity=0.176  Sum_probs=199.2

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE-EEEecCCeEEEeeCCCCccccccCCCcCCcEEEE
Q 011978          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (473)
Q Consensus       121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i  199 (473)
                      ..+++++.|+.|++||+.+++.+..+..+.. +.+++|+|+|+.+ ++++.++.|++||..+++.... +..+.. +..+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~-~~~~   78 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT-LPSGPD-PELF   78 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-ccCCCC-ccEE
Confidence            4678899999999999998887777765544 6789999999977 5667889999999988765432 222322 3455


Q ss_pred             EeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCC-eEEEEECCCCceeee
Q 011978          200 SWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDC-TIKVWETTQGKLIRE  276 (473)
Q Consensus       200 ~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~-~i~~wd~~~~~~~~~  276 (473)
                      .|+|     +++.+ ++++.++.+++||+.+++.+..+..+ ..+.+++|++++. +++++.++ .+.+||..+++....
T Consensus        79 ~~~~-----~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~  152 (300)
T TIGR03866        79 ALHP-----NGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN  152 (300)
T ss_pred             EECC-----CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence            6655     33444 55567899999999988877666432 3467899999884 55666554 567789887766544


Q ss_pred             eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE-EEecCCceEEEEeCCCCCCCeee
Q 011978          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTR  355 (473)
Q Consensus       277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~  355 (473)
                      +... .....+.++++                                    ...+ +++..++.+++||....+.....
T Consensus       153 ~~~~-~~~~~~~~s~d------------------------------------g~~l~~~~~~~~~v~i~d~~~~~~~~~~  195 (300)
T TIGR03866       153 VLVD-QRPRFAEFTAD------------------------------------GKELWVSSEIGGTVSVIDVATRKVIKKI  195 (300)
T ss_pred             EEcC-CCccEEEECCC------------------------------------CCEEEEEcCCCCEEEEEEcCcceeeeee
Confidence            3221 12233333332                                    1234 45567899999998754322211


Q ss_pred             -ecC---cc--cceeEEEECCCCcEEEEE-ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE-eCCCcEE
Q 011978          356 -MTG---HQ--QLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG-SKDSTLK  427 (473)
Q Consensus       356 -~~~---~~--~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s~Dg~i~  427 (473)
                       ...   +.  .....++|+|++++++.+ +.++.+.+||..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|+
T Consensus       196 ~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~  274 (300)
T TIGR03866       196 TFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVS  274 (300)
T ss_pred             eecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence             110   11  123468899999986554 456689999999888776553 34578999999999999886 4689999


Q ss_pred             EEECCCCceeecccccCCCEEEEEEee
Q 011978          428 VWDIRTQKLKQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       428 iwd~~~~~~~~~~~~h~~~i~~l~~s~  454 (473)
                      +||+.+++.+..++.. ...++++++|
T Consensus       275 v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       275 VIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEECCCCcEEEEEEcc-cccceeEeCC
Confidence            9999999988887654 5558888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=2.7e-25  Score=186.13  Aligned_cols=254  Identities=25%  Similarity=0.440  Sum_probs=196.7

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw  177 (473)
                      .++++..|.+.|+++.|+|....|++|+.|++|+++|+.....  .++.-....+|.++.|+|.|.+|+.|..-.++++|
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY  243 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY  243 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence            4567888999999999999999999999999999999864321  12222234579999999999999999999999999


Q ss_pred             eCCCCccc--cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-Ccc-ccEEEEEecCCC-
Q 011978          178 DPQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHT-LAVTCVKWGGDG-  252 (473)
Q Consensus       178 d~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~-~~v~~~~~~~~~-  252 (473)
                      |+++-++.  ..+-..|++.|+++.+++     .+...++++.||.|++||--+++|+.++. .|. ..|.+..|..++ 
T Consensus       244 dv~T~QcfvsanPd~qht~ai~~V~Ys~-----t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k  318 (430)
T KOG0640|consen  244 DVNTYQCFVSANPDDQHTGAITQVRYSS-----TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK  318 (430)
T ss_pred             eccceeEeeecCcccccccceeEEEecC-----CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence            99987642  345678999999999876     45789999999999999998999987764 454 468888899888 


Q ss_pred             eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                      ++++.+.|..+++|.+.+|+.+....+.+..              +...+                 +.+.+.....+.+
T Consensus       319 yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t--------------grq~~-----------------rtqAvFNhtEdyV  367 (430)
T KOG0640|consen  319 YILSSGKDSTVKLWEISTGRMLKEYTGAGTT--------------GRQKH-----------------RTQAVFNHTEDYV  367 (430)
T ss_pred             EEeecCCcceeeeeeecCCceEEEEecCCcc--------------cchhh-----------------hhhhhhcCccceE
Confidence            5889999999999999999998877653210              00000                 0000111111222


Q ss_pred             -EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978          333 -VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (473)
Q Consensus       333 -~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~  389 (473)
                       .---..+.+.-||.++.........+|.+.++.+.-||.+.-++++|.|..+|+|--
T Consensus       368 l~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  368 LFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             EccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence             222234568889988777777777899999999999999999999999999999953

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.4e-26  Score=214.25  Aligned_cols=237  Identities=28%  Similarity=0.524  Sum_probs=208.8

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~  182 (473)
                      .+..|...|.++..-..++.+++|+.|..+-+|.+....++..+.+|+.+|.|+.|+++..+|++|+.+|+|++||++.+
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence            34568899999998778899999999999999998877777778999999999999999999999999999999999988


Q ss_pred             ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC
Q 011978          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC  261 (473)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~  261 (473)
                      +... .+.+|...+..+.|+|     .+.++++|+.|+.+++||++..-|.+.+.+|...|.++.|.|+| .++.|+.|.
T Consensus       103 k~vr-tLtgh~~~~~sv~f~P-----~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen  103 KIVR-TLTGHLLNITSVDFHP-----YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN  176 (825)
T ss_pred             hhhh-hhhccccCcceeeecc-----ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence            7654 6889999999999988     45688999999999999999999999999999999999999999 678889999


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      ++++||+..|+.+..++.|                                                             
T Consensus       177 tvki~d~~agk~~~ef~~~-------------------------------------------------------------  195 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFKSH-------------------------------------------------------------  195 (825)
T ss_pred             eeeeecccccccccccccc-------------------------------------------------------------
Confidence            9999999888876655543                                                             


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS  421 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s  421 (473)
                                        ...+.++.|+|..-++++||.|+++++||+++.+.+...+.....|.+++|+|+++.+++|.
T Consensus       196 ------------------e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  196 ------------------EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             ------------------cccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence                              34455667888888899999999999999999888888777788999999999999999887


Q ss_pred             CCC
Q 011978          422 KDS  424 (473)
Q Consensus       422 ~Dg  424 (473)
                      .+.
T Consensus       258 q~s  260 (825)
T KOG0267|consen  258 QIS  260 (825)
T ss_pred             hhh
Confidence            654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.94  E-value=2.5e-24  Score=196.59  Aligned_cols=112  Identities=31%  Similarity=0.583  Sum_probs=101.6

Q ss_pred             cceeEEEECC-CCcEEEEEECCCcEEEEeCCCC-------ceEEEeeCCccCEEEEEEec-CCCEEEEEeCCCcEEEEEC
Q 011978          361 QLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG-------KFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       361 ~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~-------~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~i~iwd~  431 (473)
                      ..|+.+.|.| |...||.++.||.|++|.+..+       .....+.+|...|+++.|+| -...|++++.|-+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            4588899999 7889999999999999998754       34567889999999999999 4568999999999999999


Q ss_pred             CCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          432 RTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       432 ~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++.+....+.||.+.|++++|||||+.+|+.+.||+|+++.
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence            99999889999999999999999999999999999999985

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.7e-23  Score=189.85  Aligned_cols=360  Identities=20%  Similarity=0.271  Sum_probs=239.1

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE--EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~  182 (473)
                      ..-.+.|++++.+|.+..++.|+.||.+..++...+...+.  +...++.|.+++|+|++..|++|+.||.|++||..++
T Consensus       107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~  186 (691)
T KOG2048|consen  107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG  186 (691)
T ss_pred             cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence            44567899999999999999999999888888777654332  3345688999999999999999999999999999887


Q ss_pred             ccccc---cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEee
Q 011978          183 KPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS  258 (473)
Q Consensus       183 ~~~~~---~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~  258 (473)
                      .....   .+.+-...=..+.|+-...  .+..+++|.+.|+|++||...+..+..+..|...|.|++.+++ ..+++++
T Consensus       187 ~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG  264 (691)
T KOG2048|consen  187 QTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG  264 (691)
T ss_pred             ceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence            65431   1112222223445544332  3468999999999999999999999999999999999999877 4899999


Q ss_pred             cCCeEEEEECCCCce----eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          259 QDCTIKVWETTQGKL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      .|+.|..|...+++.    ......|.+.|.+++..+. .+..+..|..-..... .+.+.....  ..........+.+
T Consensus       265 vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s-~~~~~~~h~--~~~~~p~~~~v~~  340 (691)
T KOG2048|consen  265 VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSS-REFKNMDHR--QKNLFPASDRVSV  340 (691)
T ss_pred             CCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEEccc-cccCchhhh--ccccccccceeec
Confidence            999999888766533    2234668888999887765 3333333221111100 000000000  0001111223333


Q ss_pred             ecCCceEEEE--------eCCCC----CC----CeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC-------
Q 011978          335 GSDDFTMFLW--------EPAVS----KQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-------  391 (473)
Q Consensus       335 ~~~d~~i~iw--------d~~~~----~~----~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~-------  391 (473)
                      +..+..+.+|        .+...    ..    ...........|.+.+.||+|++||.+.-. .+++|.+.-       
T Consensus       341 a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~  419 (691)
T KOG2048|consen  341 APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVI  419 (691)
T ss_pred             CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEE
Confidence            4444444444        32211    00    011122234568899999999999988732 233433221       


Q ss_pred             -----------------------------------------C--ceEEEe--eCCccCEEEEEEecCCCEEEEEeCCCcE
Q 011978          392 -----------------------------------------G--KFVAVF--RGHVGPVYQISWSADSRLLLSGSKDSTL  426 (473)
Q Consensus       392 -----------------------------------------~--~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~Dg~i  426 (473)
                                                               +  +.+..+  ++-.+.|+.+..||+|++||+.+.+|.|
T Consensus       420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I  499 (691)
T KOG2048|consen  420 NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI  499 (691)
T ss_pred             EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceE
Confidence                                                     0  000000  0123578999999999999999999999


Q ss_pred             EEEECCCCceeecccccCCCEEEEEEe-eCCCEEEEEeCCCcEEec
Q 011978          427 KVWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       427 ~iwd~~~~~~~~~~~~h~~~i~~l~~s-~d~~~l~s~~~D~~i~~w  471 (473)
                      .+|++.+++.......-...|++++++ ++.+.|+.+..|+++.=|
T Consensus       500 ~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~ef  545 (691)
T KOG2048|consen  500 FVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEF  545 (691)
T ss_pred             EEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEE
Confidence            999999877654443344789999999 556789999999987644

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=3.7e-24  Score=188.37  Aligned_cols=297  Identities=19%  Similarity=0.321  Sum_probs=219.9

Q ss_pred             eCCCCceeEEEcCCCCCEEEEEECCCC--CeEEEEecCCeEEEeeCCCC---ccccccCCCcCCcEEEEEeceeccCCCC
Q 011978          136 DLNTQTPMFKCTGHKNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPC  210 (473)
Q Consensus       136 d~~~~~~~~~~~~~~~~v~~l~~s~dg--~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~  210 (473)
                      |+.+..+....+.+...|++++|+|..  +.+++|+.-|+|-+||+.+.   ......+..|..+|.++.|+|...    
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~----  247 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT----  247 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh----
Confidence            333333344455678899999999964  47788889999999999522   222234678999999999999644    


Q ss_pred             ceEEEeeCCCcEEEEECCCCeEEE--EecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCce-eeeeeccCceEEE
Q 011978          211 RRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNS  286 (473)
Q Consensus       211 ~~~~s~s~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~  286 (473)
                      .++++.|.||+|+.-|++....-.  .+........++.|+.+. .++.+..-|...+||++++.. ...+..|...|.+
T Consensus       248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s  327 (498)
T KOG4328|consen  248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS  327 (498)
T ss_pred             hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce
Confidence            589999999999999998754322  222234445666776554 577788778999999998754 5556778889999


Q ss_pred             EEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC---CeeeecCcccce
Q 011978          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLV  363 (473)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v  363 (473)
                      ++++|..                                   +..+++++.|++++|||++....   +......|...|
T Consensus       328 v~~NP~~-----------------------------------p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV  372 (498)
T KOG4328|consen  328 VALNPVC-----------------------------------PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV  372 (498)
T ss_pred             eecCCCC-----------------------------------chheeecccCcceeeeehhhhcCCCCcceeccccccee
Confidence            9988752                                   45799999999999999875332   234566899999


Q ss_pred             eEEEECCCCcEEEEEECCCcEEEEeCC----CCceEEEeeCCc----c--CEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          364 NHVYFSPDGQWVASASFDKSIKLWNGT----TGKFVAVFRGHV----G--PVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       364 ~~v~~sp~g~~lasgs~d~~v~lwd~~----~~~~~~~~~~h~----~--~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      .++.|||.+..|+|.+.|..|+|||..    .-++..++. |.    .  .....+|.|+..++++|-.-..|-|+|-..
T Consensus       373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~  451 (498)
T KOG4328|consen  373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG  451 (498)
T ss_pred             eeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC
Confidence            999999988889999999999999973    223333332 22    1  245678999999999999989999999998


Q ss_pred             CceeecccccC-CCEEEE-EEeeCCCEEEEE-eCCCcEEecc
Q 011978          434 QKLKQDLPGHA-DEVFAV-DWSPDGEKVASG-GKDRVLKLWM  472 (473)
Q Consensus       434 ~~~~~~~~~h~-~~i~~l-~~s~d~~~l~s~-~~D~~i~~w~  472 (473)
                      ++....+.... ..|.++ .|+|-+..+++| +..|.|.||+
T Consensus       452 ~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  452 GQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             CEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence            88666654332 245554 799998845554 5678899885

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=185.75  Aligned_cols=270  Identities=22%  Similarity=0.336  Sum_probs=200.0

Q ss_pred             EEeCC-CeEEEEeCCCCceeEEEcCC-CCCEEEEEECCCCCeEEEEecC-CeEEEeeCCCCccccccCCCcCCcEEEEEe
Q 011978          125 SGSGD-TTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSKA-GELQCWDPQTGKPSGNPLSGHKKWITGISW  201 (473)
Q Consensus       125 t~s~d-~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~dg~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  201 (473)
                      +++.| .++.+||+.++.....+++. ...-.++..- .+.+++++... ..+.+|.+....... ...--.+.+.++.-
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s   89 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALAS   89 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeec
Confidence            33445 45999999999887777654 2221222211 24577776543 578999886543322 11222345666654


Q ss_pred             ceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeecc
Q 011978          202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH  280 (473)
Q Consensus       202 ~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~  280 (473)
                      .|     .+.+++.|+..|.+.+|.+.+|..+..+.+|-..|+|+.|+.|+ .+++|+.||.|.+|++.+          
T Consensus        90 ~n-----~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~----------  154 (476)
T KOG0646|consen   90 SN-----LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD----------  154 (476)
T ss_pred             CC-----CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe----------
Confidence            43     33445555599999999999999999999999999999999888 699999999999998632          


Q ss_pred             CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc
Q 011978          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ  360 (473)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  360 (473)
                                                                         +++...|+         .-.+...+..|.
T Consensus       155 ---------------------------------------------------lv~a~~~~---------~~~p~~~f~~Ht  174 (476)
T KOG0646|consen  155 ---------------------------------------------------LVSADNDH---------SVKPLHIFSDHT  174 (476)
T ss_pred             ---------------------------------------------------ecccccCC---------CccceeeeccCc
Confidence                                                               11222221         113344566788


Q ss_pred             cceeEEEECCC--CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---
Q 011978          361 QLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK---  435 (473)
Q Consensus       361 ~~v~~v~~sp~--g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~---  435 (473)
                      -.|+++...+.  ..+|+|+|.|.++++||+..|.++..+.- ...+.+++.+|.++.++.|+.+|.|.+.++....   
T Consensus       175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~  253 (476)
T KOG0646|consen  175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS  253 (476)
T ss_pred             ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence            88888877764  46899999999999999999998877653 4579999999999999999999999998875321   


Q ss_pred             -------------eeecccccCC--CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          436 -------------LKQDLPGHAD--EVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       436 -------------~~~~~~~h~~--~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                                   ....+.||..  .|++|+.+-||..|+||+.||++.||+
T Consensus       254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  254 AGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             ccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence                         2345678887  999999999999999999999999996

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2e-23  Score=198.53  Aligned_cols=239  Identities=19%  Similarity=0.399  Sum_probs=191.5

Q ss_pred             CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (473)
Q Consensus       148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~  227 (473)
                      .|..+-+.++|.|+|..|++++.||.|++|+..........+.-+...|.+++..       ..+|++|+.+++|..|.+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~-------s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY-------SNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec-------ccceEEeeccceEEEeeC
Confidence            6888899999999999999999999999998765422222233366667776532       348999999999999999


Q ss_pred             CCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcc
Q 011978          228 SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (473)
Q Consensus       228 ~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  306 (473)
                      ..+..-..+.....++++++++.+| .++.|+.|-.|++-+..+...                                 
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~---------------------------------  130 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ---------------------------------  130 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch---------------------------------
Confidence            8876544444556788999999888 477788888888876544322                                 


Q ss_pred             cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEE
Q 011978          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (473)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l  386 (473)
                                                                    ...+.+|...|.++.|+|++++||+.+-||.|++
T Consensus       131 ----------------------------------------------~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen  131 ----------------------------------------------EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             ----------------------------------------------heeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence                                                          2335577888999999999999999999999999


Q ss_pred             EeCCCCceEEEeeC--------CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc--cCCCEEEEEEeeCC
Q 011978          387 WNGTTGKFVAVFRG--------HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG--HADEVFAVDWSPDG  456 (473)
Q Consensus       387 wd~~~~~~~~~~~~--------h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~s~d~  456 (473)
                      ||++++.+..++.+        ....+..++|+|+|..++..+.|+.|++|+...+.....+..  +...+..+.|||.|
T Consensus       165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG  244 (933)
T KOG1274|consen  165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG  244 (933)
T ss_pred             EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence            99999887665543        145678899999988888888999999999999887766644  34458899999999


Q ss_pred             CEEEEEeCCCcEEecc
Q 011978          457 EKVASGGKDRVLKLWM  472 (473)
Q Consensus       457 ~~l~s~~~D~~i~~w~  472 (473)
                      +|||+++.||.|.||+
T Consensus       245 ~YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  245 KYIAASTLDGQILVWN  260 (933)
T ss_pred             cEEeeeccCCcEEEEe
Confidence            9999999999999997

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.5e-22  Score=170.25  Aligned_cols=279  Identities=18%  Similarity=0.329  Sum_probs=202.3

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCC
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS  190 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~  190 (473)
                      -.|+.|++.|.+||.|+.||.|.|||+.|......+.+|..+|.|++||+||+.|++++.|..|.+||+..|......  
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--
Confidence            679999999999999999999999999998877778899999999999999999999999999999999988754432  


Q ss_pred             CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec---Cc-cccEEEEEecCCC-eEEEeecCCeEEE
Q 011978          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GH-TLAVTCVKWGGDG-VIYTGSQDCTIKV  265 (473)
Q Consensus       191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~---~h-~~~v~~~~~~~~~-~l~s~~~d~~i~~  265 (473)
                      ....+|....|+|...    +.++..-.+..-.+-++..++....-.   +. +..-.+..|...| ++++|...|.+.+
T Consensus       104 rf~spv~~~q~hp~k~----n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv  179 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKR----NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV  179 (405)
T ss_pred             EccCccceeeeccccC----CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence            2346777888887543    244444444444444444322211111   11 1111223466655 6899999999999


Q ss_pred             EECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978          266 WETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (473)
Q Consensus       266 wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  344 (473)
                      +|..+-+++..++... ..|..+-++.                                    ..+.++.-+.|+.|+.+
T Consensus       180 ~~a~t~e~vas~rits~~~IK~I~~s~------------------------------------~g~~liiNtsDRvIR~y  223 (405)
T KOG1273|consen  180 YDAETLECVASFRITSVQAIKQIIVSR------------------------------------KGRFLIINTSDRVIRTY  223 (405)
T ss_pred             EecchheeeeeeeechheeeeEEEEec------------------------------------cCcEEEEecCCceEEEE
Confidence            9999988888776544 4444444332                                    24568888899999999


Q ss_pred             eCCCCC-----CCee---eec--CcccceeEEEECCCCcEEEEEECC-CcEEEEeCCCCceEEEeeCCc-cCEEEEEEec
Q 011978          345 EPAVSK-----QPKT---RMT--GHQQLVNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFRGHV-GPVYQISWSA  412 (473)
Q Consensus       345 d~~~~~-----~~~~---~~~--~~~~~v~~v~~sp~g~~lasgs~d-~~v~lwd~~~~~~~~~~~~h~-~~v~~v~~sp  412 (473)
                      +...-.     ....   ++.  -....-.+++||.+|.|++.|+.. ..+++|.-..|.+++++.|.. ....+|.|+|
T Consensus       224 e~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp  303 (405)
T KOG1273|consen  224 EISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP  303 (405)
T ss_pred             ehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence            864111     0111   100  011223568999999999988753 579999999999999998877 5678899999


Q ss_pred             CCCEEEEEeCCCcEEEEECC
Q 011978          413 DSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       413 ~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      -...+++- ..|+|+||...
T Consensus       304 ~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  304 VRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             ceeeeeec-cCCceEEEEee
Confidence            98888887 67899999753

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.5e-24  Score=185.36  Aligned_cols=238  Identities=21%  Similarity=0.377  Sum_probs=183.9

Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEEC
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET  268 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~  268 (473)
                      +.+|.+.|.+++=+|...    ..+++|+.||.|+|||+....|+..+..|.+.|..+++.. +.+++++.|.+|+.|..
T Consensus        62 L~gHrdGV~~lakhp~~l----s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKL----STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             ccccccccchhhcCcchh----hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeec
Confidence            578888888888777543    3689999999999999999999999999999999999886 67899999999999986


Q ss_pred             CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCC
Q 011978          269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (473)
Q Consensus       269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  348 (473)
                      .. ..++++.+... +..+.-+                                    .....+++|+.  .|-|||...
T Consensus       137 ~~-~p~~tilg~s~-~~gIdh~------------------------------------~~~~~FaTcGe--~i~IWD~~R  176 (433)
T KOG0268|consen  137 DG-PPLHTILGKSV-YLGIDHH------------------------------------RKNSVFATCGE--QIDIWDEQR  176 (433)
T ss_pred             cC-Ccceeeecccc-ccccccc------------------------------------cccccccccCc--eeeeccccc
Confidence            53 23333222110 0000000                                    01224556554  488999753


Q ss_pred             CCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEE
Q 011978          349 SKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK  427 (473)
Q Consensus       349 ~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~  427 (473)
                       ..|...+....+.|.++.|+|.. ..|++++.|+.|.|||++++.++....- .-.-+.++|+|.+--+++|+.|..++
T Consensus       177 -~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY  254 (433)
T KOG0268|consen  177 -DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLY  254 (433)
T ss_pred             -CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccce
Confidence             34556666667789999999965 5677888999999999999988765432 22456799999887889999999999


Q ss_pred             EEECCCC-ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978          428 VWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       428 iwd~~~~-~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      .||++.. ..+....+|.+.|++++|||.|+-++|||.|++|+||.+
T Consensus       255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  255 TYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             ehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence            9999864 456777889999999999999999999999999999853

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=4.3e-23  Score=188.71  Aligned_cols=285  Identities=24%  Similarity=0.383  Sum_probs=202.6

Q ss_pred             EEEECCC---CCeEEEEeCCCeEEEEeCCCCc------eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          113 SVAFSPD---GRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       113 ~~~~sp~---~~~lat~s~d~~i~iwd~~~~~------~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      +..|++.   ...||.+.+||.|.++|.....      .+.....|.+.|..+.|-|....|++++.|.++++||+++++
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            3556543   4568899999999999986432      234456899999999999976789999999999999999887


Q ss_pred             cccc-cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE--E-------------------------EE
Q 011978          184 PSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC--V-------------------------IC  235 (473)
Q Consensus       184 ~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~--~-------------------------~~  235 (473)
                      ..+. ...+|...|.+++|.|..    ...|++|+.||.+.|||++-...  +                         ..
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n----~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k  209 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTN----PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK  209 (720)
T ss_pred             eecceeecccccccchhhhccCC----CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence            6543 467999999999998854    35799999999999999864320  0                         00


Q ss_pred             ecCccc----cEEEEEecCCCeEEEeec-CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978          236 LSGHTL----AVTCVKWGGDGVIYTGSQ-DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (473)
Q Consensus       236 ~~~h~~----~v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (473)
                      -..+..    .|+.+.|..+..|++++. |+.|+|||+++..........                              
T Consensus       210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~------------------------------  259 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR------------------------------  259 (720)
T ss_pred             cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC------------------------------
Confidence            011222    345566666667777665 888888888765432211000                              


Q ss_pred             HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc---ccceeEEEECCCCcEEEEEECCCcEEEE
Q 011978          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---QQLVNHVYFSPDGQWVASASFDKSIKLW  387 (473)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~v~~sp~g~~lasgs~d~~v~lw  387 (473)
                                                               .......|   ...+.++.....|.+|.+.+.|++|++|
T Consensus       260 -----------------------------------------~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y  298 (720)
T KOG0321|consen  260 -----------------------------------------GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY  298 (720)
T ss_pred             -----------------------------------------cccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence                                                     00000001   2245677777788888888889999999


Q ss_pred             eCCCCc--eEEEeeCCccC--EEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eecccccCCCEEEEEEeeCC-CEEEE
Q 011978          388 NGTTGK--FVAVFRGHVGP--VYQISWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDWSPDG-EKVAS  461 (473)
Q Consensus       388 d~~~~~--~~~~~~~h~~~--v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~d~-~~l~s  461 (473)
                      |+.+..  ++..+.++...  -..-..+||+.+|++|+.|...++|.+..-+. ...+.||...|++++|.|.. .-+++
T Consensus       299 nm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T  378 (720)
T KOG0321|consen  299 NMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT  378 (720)
T ss_pred             eccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence            987643  34445444321  12334589999999999999999999987543 45678999999999997642 34677


Q ss_pred             EeCCCcEEecc
Q 011978          462 GGKDRVLKLWM  472 (473)
Q Consensus       462 ~~~D~~i~~w~  472 (473)
                      ++.|.++++|.
T Consensus       379 cSdD~~~kiW~  389 (720)
T KOG0321|consen  379 CSDDFRVKIWR  389 (720)
T ss_pred             eccCcceEEEe
Confidence            79999999996

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-22  Score=180.75  Aligned_cols=285  Identities=19%  Similarity=0.244  Sum_probs=210.9

Q ss_pred             EeCCCeEEEEeCCCCceeEEEc--CCCCCEEEEEECCCCCeEEE--EecCCeEEEeeCCCCcccccc----CCCcCC-cE
Q 011978          126 GSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKHLVS--GSKAGELQCWDPQTGKPSGNP----LSGHKK-WI  196 (473)
Q Consensus       126 ~s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~s--~~~dg~i~iwd~~~~~~~~~~----~~~~~~-~v  196 (473)
                      ++....+++||+..-...-.+.  ..+..+.++.|+.... |++  .+.|..+++|.-. |+....+    ..+... .|
T Consensus         8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd~~~Cv   85 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGDNAFCV   85 (673)
T ss_pred             eccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEeccc-CCCCccceeeccccchHHHH
Confidence            3444579999986432211111  1233489999987653 444  4567889999633 2211111    111111 11


Q ss_pred             EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeecCCeEEEEECCCCceee
Q 011978          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIR  275 (473)
Q Consensus       197 ~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~  275 (473)
                      .+..        ...++++|+..+.|+|||++...+...+++|...|+++.++. |.+|++++..|.|.+-.+.++....
T Consensus        86 ~~~s--------~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt  157 (673)
T KOG4378|consen   86 ACAS--------QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT  157 (673)
T ss_pred             hhhh--------cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence            1111        224789999999999999998888888999999999999985 5689999999999999999887777


Q ss_pred             eeecc-CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978          276 ELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (473)
Q Consensus       276 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  354 (473)
                      .+... ++.|.-+.+++..                                   ...|.+++++|.+.+||.........
T Consensus       158 ~f~~~sgqsvRll~ys~sk-----------------------------------r~lL~~asd~G~VtlwDv~g~sp~~~  202 (673)
T KOG4378|consen  158 TFTIDSGQSVRLLRYSPSK-----------------------------------RFLLSIASDKGAVTLWDVQGMSPIFH  202 (673)
T ss_pred             ceecCCCCeEEEeeccccc-----------------------------------ceeeEeeccCCeEEEEeccCCCcccc
Confidence            77554 4555555555431                                   23578899999999999877666666


Q ss_pred             eecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          355 RMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       355 ~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      ....|..+...|+|+| +..+|++.+.|..|.+||..+.+....+.. ..|...|+|+++|.+|+.|+..|.|+.||++.
T Consensus       203 ~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  203 ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            6778999999999999 456888999999999999987766655543 34889999999999999999999999999987


Q ss_pred             C-ceeecccccCCCEEEEEEeeCC
Q 011978          434 Q-KLKQDLPGHADEVFAVDWSPDG  456 (473)
Q Consensus       434 ~-~~~~~~~~h~~~i~~l~~s~d~  456 (473)
                      . .....+..|...|++++|-|.-
T Consensus       282 ~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  282 TKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CCCCceEeeecccceeEEEeeecc
Confidence            4 4567888999999999998764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=1.1e-22  Score=175.01  Aligned_cols=241  Identities=27%  Similarity=0.474  Sum_probs=175.5

Q ss_pred             cccCCcccEEEEEECCCCCe--EEEEeCCCeEEEEeCCC----------------CceeEEEcCCCCCEEEEEECCC-CC
Q 011978          103 TIAGHTEAVLSVAFSPDGRQ--LASGSGDTTVRLWDLNT----------------QTPMFKCTGHKNWVLCIAWSAD-GK  163 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~--lat~s~d~~i~iwd~~~----------------~~~~~~~~~~~~~v~~l~~s~d-g~  163 (473)
                      ...+|.+.++.+.-++-++-  .|+=+..|.|+|||+..                .++++++.+|...=..|+|||- -.
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG  225 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence            34579999999998887654  44456789999999742                3577888999998999999992 22


Q ss_pred             eEEEEecCCeEEEeeCCCCccc--cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc
Q 011978          164 HLVSGSKAGELQCWDPQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL  241 (473)
Q Consensus       164 ~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~  241 (473)
                      .|++|.-.+.|++|...+|...  ..++                                               .+|..
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-----------------------------------------------~gH~~  258 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPF-----------------------------------------------TGHTK  258 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccc-----------------------------------------------ccccc
Confidence            5888888889999988766421  1222                                               34555


Q ss_pred             cEEEEEecC--CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978          242 AVTCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (473)
Q Consensus       242 ~v~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (473)
                      .|-.++|+|  ++.+++|+.||+|+|||++.+..-.                                            
T Consensus       259 SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--------------------------------------------  294 (440)
T KOG0302|consen  259 SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--------------------------------------------  294 (440)
T ss_pred             chhhhccCCccCceEEeeecCceEEEEEecCCCccc--------------------------------------------
Confidence            666666655  3567788888888888877652110                                            


Q ss_pred             hhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC---CceEE
Q 011978          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT---GKFVA  396 (473)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~---~~~~~  396 (473)
                                                       ......|...|+.|.|+-+-.+||+|+.||+++|||++.   ++++.
T Consensus       295 ---------------------------------~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA  341 (440)
T KOG0302|consen  295 ---------------------------------AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA  341 (440)
T ss_pred             ---------------------------------eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence                                             001124556788899998888999999999999999874   56889


Q ss_pred             EeeCCccCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCce-----------e-----eccccc--CCCEEEEEEeeCCC
Q 011978          397 VFRGHVGPVYQISWSAD-SRLLLSGSKDSTLKVWDIRTQKL-----------K-----QDLPGH--ADEVFAVDWSPDGE  457 (473)
Q Consensus       397 ~~~~h~~~v~~v~~sp~-g~~l~s~s~Dg~i~iwd~~~~~~-----------~-----~~~~~h--~~~i~~l~~s~d~~  457 (473)
                      .|+-|..+|+++.|+|. ...|++++.|..|.|||+..-.-           +     +.+.-|  +..+-.|.|++.-.
T Consensus       342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiP  421 (440)
T KOG0302|consen  342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIP  421 (440)
T ss_pred             eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCC
Confidence            99999999999999994 45788888999999999853211           1     112224  34677889997743


Q ss_pred             -EEEEEeCCCc
Q 011978          458 -KVASGGKDRV  467 (473)
Q Consensus       458 -~l~s~~~D~~  467 (473)
                       +|+|.+.||.
T Consensus       422 G~lvsTa~dGf  432 (440)
T KOG0302|consen  422 GLLVSTAIDGF  432 (440)
T ss_pred             CeEEEecccce
Confidence             6778888874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=3.2e-22  Score=181.72  Aligned_cols=286  Identities=19%  Similarity=0.308  Sum_probs=211.2

Q ss_pred             EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe-------
Q 011978          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-------  216 (473)
Q Consensus       144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~-------  216 (473)
                      ..+.+|++.|.|+...|.|.+|++|+.||++++|.+.+|+++....  ....|.+++|+|....   ..++.+       
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~---~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDL---CVLAVAVGECVLI  468 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCc---eeEEEEecCceEE
Confidence            4467999999999999999999999999999999999999876443  2347899999985321   112211       


Q ss_pred             -------------------------eCCCcEEEEECCC----CeEEEEecCccccEEEEEecCCC-eEEEeec---CCeE
Q 011978          217 -------------------------SKDGDARIWDVSL----RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ---DCTI  263 (473)
Q Consensus       217 -------------------------s~dg~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~---d~~i  263 (473)
                                               ..++.+..|.-..    .+.+.....|...|..+.|+..| +|++..-   ...|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence                                     1233444554321    11122334577889999999887 4555433   3567


Q ss_pred             EEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEE
Q 011978          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (473)
Q Consensus       264 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  343 (473)
                      .|.++...+...-+......+.++.|+|...                                    .++.+ ....+++
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p------------------------------------~lfVa-Tq~~vRi  591 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP------------------------------------YLFVA-TQRSVRI  591 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCCc------------------------------------eEEEE-eccceEE
Confidence            7888876655555555556677777776422                                    12222 2467899


Q ss_pred             EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeC
Q 011978          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSK  422 (473)
Q Consensus       344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~  422 (473)
                      ||+.... ..+++.....+|.+++++|.|.-|+.|+.|+.+..+|+.-. ++.++++-|...+.+|+|++.=.++++|+.
T Consensus       592 YdL~kqe-lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd  670 (733)
T KOG0650|consen  592 YDLSKQE-LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD  670 (733)
T ss_pred             EehhHHH-HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC
Confidence            9976532 23344445678999999999999999999999999999854 567788899999999999999999999999


Q ss_pred             CCcEEEEECCCC---------ceeecccccCCC----EEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          423 DSTLKVWDIRTQ---------KLKQDLPGHADE----VFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       423 Dg~i~iwd~~~~---------~~~~~~~~h~~~----i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ||++.|+.-+-.         -.++.+.||...    |..+.|+|...+|.|+|.|++|++|.
T Consensus       671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            999999864321         125678898765    88999999999999999999999995

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=5.4e-21  Score=175.91  Aligned_cols=262  Identities=15%  Similarity=0.167  Sum_probs=181.9

Q ss_pred             CeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccc
Q 011978          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTL  241 (473)
Q Consensus       163 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~  241 (473)
                      ..+++++.|+.+++||+.+++.... +..+. .+.++.|.|     ++..+ ++++.++.+++||..+++....+..+..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~-~~~~~-~~~~l~~~~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~   74 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRT-FPVGQ-RPRGITLSK-----DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD   74 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEE-EECCC-CCCceEECC-----CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC
Confidence            5688999999999999988775432 33333 345677765     34444 6778899999999999887766655433


Q ss_pred             cEEEEEecCCCe-EE-EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978          242 AVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (473)
Q Consensus       242 ~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (473)
                       +..+.|++++. ++ +++.|+.+++||+.+++.+..+... ..+..++++++.                          
T Consensus        75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg--------------------------  126 (300)
T TIGR03866        75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDG--------------------------  126 (300)
T ss_pred             -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCC--------------------------
Confidence             46778888874 44 4567899999999988776665422 223445554432                          


Q ss_pred             hhhcccCCCCceEEEecCCc-eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCCCCceEEE
Q 011978          320 RYNKIKGNAPERLVSGSDDF-TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAV  397 (473)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~~~~~~~  397 (473)
                                ..+++++.++ .+.+||...........  ....+.+++|+|+|++|+.+ ..++.|++||+.+++.+..
T Consensus       127 ----------~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~  194 (300)
T TIGR03866       127 ----------KIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK  194 (300)
T ss_pred             ----------CEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence                      2355555543 56677865432211111  22345779999999988654 4689999999999987766


Q ss_pred             eeCCc-----c--CEEEEEEecCCCEEEE-EeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE-eCCCcE
Q 011978          398 FRGHV-----G--PVYQISWSADSRLLLS-GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG-GKDRVL  468 (473)
Q Consensus       398 ~~~h~-----~--~v~~v~~sp~g~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~-~~D~~i  468 (473)
                      +..+.     .  ....++|+|++++++. .+.++.+.+||+.+++....+. +...+.+++|+|+|++|+++ +.++.|
T Consensus       195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i  273 (300)
T TIGR03866       195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDV  273 (300)
T ss_pred             eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeE
Confidence            54321     1  2346889999998554 4556789999999887765543 34578999999999999886 468999


Q ss_pred             Eecc
Q 011978          469 KLWM  472 (473)
Q Consensus       469 ~~w~  472 (473)
                      ++|+
T Consensus       274 ~v~d  277 (300)
T TIGR03866       274 SVID  277 (300)
T ss_pred             EEEE
Confidence            9996

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=1.5e-22  Score=185.26  Aligned_cols=277  Identities=20%  Similarity=0.325  Sum_probs=190.5

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE--EcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeC
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP  179 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~  179 (473)
                      ....|...|..+.|-|-...|+++++|.++++||+++.+....  +.+|...|.+++|.|+.. .+++|+.||.|.|||.
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            3457999999999999666789999999999999998876655  789999999999999654 6778999999999997


Q ss_pred             CCCccc------cccC--------------------CCcCCcEEE-EEeceeccCCCCceEEEeeC-CCcEEEEECCCCe
Q 011978          180 QTGKPS------GNPL--------------------SGHKKWITG-ISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRK  231 (473)
Q Consensus       180 ~~~~~~------~~~~--------------------~~~~~~v~~-i~~~~~~~~~~~~~~~s~s~-dg~i~iwd~~~~~  231 (473)
                      +-....      ....                    ..+...|.+ +.   +.+..+...+++++. |+.|++||++...
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT---vv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT---VVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE---EEEEeccceeeeccCCCcceEEEeecccc
Confidence            532100      0000                    112222222 00   112235568888887 9999999999876


Q ss_pred             EEEEec--------Cc---cccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978          232 CVICLS--------GH---TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (473)
Q Consensus       232 ~~~~~~--------~h---~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (473)
                      +.....        -|   ...++++..+..| +|++.+.|++|+.|++..-..-                |.       
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s----------------P~-------  308 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS----------------PV-------  308 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC----------------ch-------
Confidence            554321        22   3456777776655 6777777999999997652210                00       


Q ss_pred             ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE
Q 011978          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (473)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs  379 (473)
                                                     .++.+....++                     -..-..+||+.+|++|+
T Consensus       309 -------------------------------~~~sg~~~~sf---------------------~vks~lSpd~~~l~SgS  336 (720)
T KOG0321|consen  309 -------------------------------AEFSGKLNSSF---------------------YVKSELSPDDCSLLSGS  336 (720)
T ss_pred             -------------------------------hhccCccccee---------------------eeeeecCCCCceEeccC
Confidence                                           00111000000                     01124689999999999


Q ss_pred             CCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCc--------------eeeccccc
Q 011978          380 FDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQK--------------LKQDLPGH  443 (473)
Q Consensus       380 ~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~--------------~~~~~~~h  443 (473)
                      .|...++|.+.+.+ ....+.+|.-.|++|+|.|.. .-+++++.|.+++||++..+-              ....+++|
T Consensus       337 sd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~  416 (720)
T KOG0321|consen  337 SDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGH  416 (720)
T ss_pred             CCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhcc
Confidence            99999999988765 356678999999999998843 457778999999999986431              12344666


Q ss_pred             CCCEEEEEEeeCCC
Q 011978          444 ADEVFAVDWSPDGE  457 (473)
Q Consensus       444 ~~~i~~l~~s~d~~  457 (473)
                      ...+..+.|+-.+.
T Consensus       417 ~p~~~nv~ss~~~t  430 (720)
T KOG0321|consen  417 LPQVLNVNSSLRKT  430 (720)
T ss_pred             cccccccccccccc
Confidence            66666666654443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2e-21  Score=163.18  Aligned_cols=236  Identities=22%  Similarity=0.267  Sum_probs=176.9

Q ss_pred             CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  185 (473)
                      -|..++.+++|.+ ...+++|+-||.|+.+|++++... .+..|..+|.|+.+++....+++|+.|++|++||.+.....
T Consensus        52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~  129 (323)
T KOG1036|consen   52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV  129 (323)
T ss_pred             ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence            4899999999987 456899999999999999988654 35679999999999998889999999999999999863322


Q ss_pred             cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--cCccccEEEEEecCCC-eEEEeecCCe
Q 011978          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQDCT  262 (473)
Q Consensus       186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~-~l~s~~~d~~  262 (473)
                      ..  ....+.|.++..       .+++++.|+.+..+.+||+++.....+.  .+....+.|++..|++ -.+.++-||.
T Consensus       130 ~~--~d~~kkVy~~~v-------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR  200 (323)
T KOG1036|consen  130 GT--FDQGKKVYCMDV-------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR  200 (323)
T ss_pred             cc--cccCceEEEEec-------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce
Confidence            21  222336666653       3468999999999999999876544322  2345578899888865 3778899999


Q ss_pred             EEEEECCCCceee----eeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          263 IKVWETTQGKLIR----ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       263 i~~wd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      |.+=.+.......    .++.|-                                                     -..+
T Consensus       201 VavE~~d~s~~~~skkyaFkCHr-----------------------------------------------------~~~~  227 (323)
T KOG1036|consen  201 VAVEYFDDSEEAQSKKYAFKCHR-----------------------------------------------------LSEK  227 (323)
T ss_pred             EEEEccCCchHHhhhceeEEeee-----------------------------------------------------cccC
Confidence            8774433321110    011000                                                     0001


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEE
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL  418 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~  418 (473)
                      ++-.                 -.+|++++|+|-...||||+.||.|.+||+.+.+.+..+..-...|.+++|+.||..||
T Consensus       228 ~~~~-----------------~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA  290 (323)
T KOG1036|consen  228 DTEI-----------------IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA  290 (323)
T ss_pred             CceE-----------------EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence            1111                 13589999999999999999999999999999988888876667899999999999999


Q ss_pred             EEeC
Q 011978          419 SGSK  422 (473)
Q Consensus       419 s~s~  422 (473)
                      .++.
T Consensus       291 ia~s  294 (323)
T KOG1036|consen  291 IASS  294 (323)
T ss_pred             EEec
Confidence            9874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=1.2e-19  Score=175.44  Aligned_cols=326  Identities=38%  Similarity=0.668  Sum_probs=248.8

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCC-CCEEEEEE-CCCCC-eEEEEec-CCeEEEe
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-PMFKCTGHK-NWVLCIAW-SADGK-HLVSGSK-AGELQCW  177 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~-~~~~~~~~~-~~v~~l~~-s~dg~-~l~s~~~-dg~i~iw  177 (473)
                      .+.+|...+.++.|.+.+..++.++.|+.+.+|+..... ....+..+. ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            456799999999999999999999999999999998876 555555533 36777777 88887 5555444 8999999


Q ss_pred             eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC-CCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EE
Q 011978          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY  255 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~  255 (473)
                      +..........+..|...|..+.|.|.     ...+++++. |+.+++|+...+..+..+.+|...|.+++|.+++. ++
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  214 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPD-----GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI  214 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCC-----CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence            998722233457788999999988874     336777775 99999999999888888999999999999998874 44


Q ss_pred             -EeecCCeEEEEECCCCceee-eeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          256 -TGSQDCTIKVWETTQGKLIR-ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       256 -s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                       +++.|+.+++||...+..+. .+..|.... ...+++.                                    ...++
T Consensus       215 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------------------------------------~~~~~  257 (466)
T COG2319         215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------------------------------------GSLLA  257 (466)
T ss_pred             EEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------------------------------------CCEEE
Confidence             44999999999988777776 466655442 2123222                                    13577


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee--CCccCEEEEEEe
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQISWS  411 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~s  411 (473)
                      +++.|+.+++|+............+|...+.++.|+|++..+++++.|+.+++||..+........  .|...+..+.|+
T Consensus       258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (466)
T COG2319         258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS  337 (466)
T ss_pred             EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEEC
Confidence            899999999999876554233336788899999999999999989999999999998887766665  788889999994


Q ss_pred             cCCCEEEEE-eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEE-EeCCCcEEecc
Q 011978          412 ADSRLLLSG-SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS-GGKDRVLKLWM  472 (473)
Q Consensus       412 p~g~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s-~~~D~~i~~w~  472 (473)
                      +++..++.+ ..|+.+++|++............ ..+..+.+++ ...+.. +..++.+.+|.
T Consensus       338 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  398 (466)
T COG2319         338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWD  398 (466)
T ss_pred             CCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEe
Confidence            343555555 68899999999877633333222 2288899988 544454 78899999986

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.90  E-value=8.8e-23  Score=167.46  Aligned_cols=286  Identities=21%  Similarity=0.302  Sum_probs=194.9

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      .+.+|.+.|+++-|-.+++ |.+|...|.|.+|++.+.+....+. .|...|+.+.--|+ ..|.+-+.|..+.+|++.-
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~   86 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY   86 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence            3457999999999988776 8899999999999999988777676 56788999998887 5788999999999999876


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCC----ceEEEeeCCC-cEEEEECCCCeEEEEe----cCccccEEEEEecCC-
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPC----RRFVSASKDG-DARIWDVSLRKCVICL----SGHTLAVTCVKWGGD-  251 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~----~~~~s~s~dg-~i~iwd~~~~~~~~~~----~~h~~~v~~~~~~~~-  251 (473)
                      +..    ...|.-.++++.|.+.......    ..++.-+... .+.+-|......+...    .+..+.+.|..+..+ 
T Consensus        87 s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c  162 (323)
T KOG0322|consen   87 SAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC  162 (323)
T ss_pred             cce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence            542    3334445555555543322111    0111111100 0122222211111111    133456777776432 


Q ss_pred             C---eEEEeecCCeEEEEECCCCceeeee----------eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          252 G---VIYTGSQDCTIKVWETTQGKLIREL----------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       252 ~---~l~s~~~d~~i~~wd~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      +   .+++|-.+|.+-+||+.++..+-.+          ..|..+|.++.+.+.                          
T Consensus       163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~--------------------------  216 (323)
T KOG0322|consen  163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS--------------------------  216 (323)
T ss_pred             cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--------------------------
Confidence            2   4678889999999999988443333          345555555554422                          


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCC----CeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~  394 (473)
                                .++-++|+.+..+..|.+.....    .......| ..+..+.+-||++.+||++.|+.||+|+.+++.+
T Consensus       217 ----------~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p  285 (323)
T KOG0322|consen  217 ----------CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP  285 (323)
T ss_pred             ----------hcCCcCCCccccceeeeeccccCcccccceEEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCCc
Confidence                      11234555555666665543211    11111222 3477889999999999999999999999999999


Q ss_pred             EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978          395 VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       395 ~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~  431 (473)
                      +.+++.|.+.|++|+|+||...+|.+|.|++|-+|++
T Consensus       286 LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  286 LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999999999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=8.8e-22  Score=166.53  Aligned_cols=312  Identities=22%  Similarity=0.378  Sum_probs=218.0

Q ss_pred             cccCCcccEEEEEECC----CCCeEEEEeCCCeEEEEeCCCCceeEEE-----cCCCCCEEEEEECCC----CCeEEEEe
Q 011978          103 TIAGHTEAVLSVAFSP----DGRQLASGSGDTTVRLWDLNTQTPMFKC-----TGHKNWVLCIAWSAD----GKHLVSGS  169 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp----~~~~lat~s~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~s~d----g~~l~s~~  169 (473)
                      ..++|..+|..++|++    +...+++..+.+.+.+|.......+..+     ..|+.....++|+-|    ..++|.|+
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            3467999999999984    2233444445668899987654422222     246667788888754    34788999


Q ss_pred             cCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec---CccccEEEE
Q 011978          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCV  246 (473)
Q Consensus       170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~  246 (473)
                      .-|.|++.|+.+++... .+.+|...|+.+.+.|...    ..++++|.|.+||+|++++..|+..+.   ||...|.++
T Consensus       113 ~~GvIrVid~~~~~~~~-~~~ghG~sINeik~~p~~~----qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv  187 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSK-NYRGHGGSINEIKFHPDRP----QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV  187 (385)
T ss_pred             ceeEEEEEecchhhhcc-ceeccCccchhhhcCCCCC----cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence            99999999998877654 5789999999999998643    589999999999999999999998874   799999999


Q ss_pred             EecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978          247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (473)
Q Consensus       247 ~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
                      .|+.++ .+++++.|.+|++|++...+....++.      +..++++.         +.+.+..+               
T Consensus       188 D~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~------s~~~~~~~---------t~~pfpt~---------------  237 (385)
T KOG1034|consen  188 DFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL------SITYSPNK---------TTRPFPTP---------------  237 (385)
T ss_pred             EEcCCCCeeeccCCcceEEEEecChhHHhhhhhh------hcccCCCC---------ccCcCCcc---------------
Confidence            999987 699999999999999875332211111      01111110         00000000               


Q ss_pred             CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC-CC------------
Q 011978          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TG------------  392 (473)
Q Consensus       326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~~------------  392 (473)
                                    ...+.+       .....-|...|-|+.|-  |.++++=|-++.|..|... -+            
T Consensus       238 --------------~~~fp~-------fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~  294 (385)
T KOG1034|consen  238 --------------KTHFPD-------FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA  294 (385)
T ss_pred             --------------cccccc-------ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence                          000000       01223466777777775  5889998999999999762 11            


Q ss_pred             -ceEEEeeCCccCEEEEEE--ecCCCEEEEEeCCCcEEEEECCCCcee--eccc--ccCCCEEEEEEeeCCCEEEEEeCC
Q 011978          393 -KFVAVFRGHVGPVYQISW--SADSRLLLSGSKDSTLKVWDIRTQKLK--QDLP--GHADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       393 -~~~~~~~~h~~~v~~v~~--sp~g~~l~s~s~Dg~i~iwd~~~~~~~--~~~~--~h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                       ..+..+.-....|+-+.|  .|-+++||.|...|.|++||++.....  .++.  .....|.+.+||.||..|+....|
T Consensus       295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd  374 (385)
T KOG1034|consen  295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD  374 (385)
T ss_pred             eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence             123344445566666655  466789999999999999999875441  2222  123578899999999999999999


Q ss_pred             CcEEecc
Q 011978          466 RVLKLWM  472 (473)
Q Consensus       466 ~~i~~w~  472 (473)
                      ++|.=|+
T Consensus       375 ~~Vwrwd  381 (385)
T KOG1034|consen  375 GTVWRWD  381 (385)
T ss_pred             CcEEEEE
Confidence            9998775

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.7e-22  Score=188.81  Aligned_cols=282  Identities=18%  Similarity=0.304  Sum_probs=214.3

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc----eeEEEcCCC---CCEEEEEECC-CCCeEEEEecCCeEEEeeCCC
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHK---NWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~----~~~~~~~~~---~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      ..++|+..++-..++.++. ...+||.++...    .....+...   ..+..+.|.. +.++|++++..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            4566777788777777654 367777665321    111111111   1244566764 467999999999999999976


Q ss_pred             --CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--CeEEEe
Q 011978          182 --GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTG  257 (473)
Q Consensus       182 --~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~  257 (473)
                        .......+..|+..++.+.|++...    ..+++||.||.|++||++..+...++.+....|..+.|++.  ..++++
T Consensus       120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep----~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~  195 (839)
T KOG0269|consen  120 SIRNKLLTVFNEHERSANKLDFHSTEP----NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI  195 (839)
T ss_pred             cccchhhhHhhhhccceeeeeeccCCc----cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence              2233346789999999999998654    58999999999999999999998889898899999999864  368888


Q ss_pred             ecCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          258 SQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       258 ~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      ...|.+++||++.. ++...+..|.++|.++.++|+.                                    +.|++|+
T Consensus       196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr------------------------------------~~lATGG  239 (839)
T KOG0269|consen  196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR------------------------------------EWLATGG  239 (839)
T ss_pred             cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC------------------------------------ceeeecC
Confidence            99999999999875 5567788999999999999863                                    4599999


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEE--CCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEec
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS--FDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWSA  412 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs--~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp  412 (473)
                      .|+.+++||....+........-...+.+|.|-|+.+ .||+++  .|-.|+|||++..- +..++..|...++.++|..
T Consensus       240 RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  240 RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence            9999999998654433333333346789999999766 466665  47789999998654 4567889999999999965


Q ss_pred             -CCCEEEEEeCCCcEEEEECC
Q 011978          413 -DSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       413 -~g~~l~s~s~Dg~i~iwd~~  432 (473)
                       |...|.+++.||+|..-.++
T Consensus       320 ~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  320 GDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             CCceeeEeecCccHHHHhhhh
Confidence             45578899999987654433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.1e-22  Score=161.80  Aligned_cols=216  Identities=25%  Similarity=0.396  Sum_probs=165.5

Q ss_pred             cccccccCCcccEEEEEECC--CCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCC--CCeEEEEecCC
Q 011978           99 RCSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAG  172 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp--~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg  172 (473)
                      +...+|.||.++|+.++|..  .|..||+++.||.|.||.-++++  +......|...|.+++|.|.  |-.|++++.||
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG  126 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG  126 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence            46678999999999999975  69999999999999999987763  34456789999999999985  66889999999


Q ss_pred             eEEEeeCCCC--ccccccCCCcCCcEEEEEeceeccC---------CCCceEEEeeCCCcEEEEECCCCeE--EEEecCc
Q 011978          173 ELQCWDPQTG--KPSGNPLSGHKKWITGISWEPVHLN---------APCRRFVSASKDGDARIWDVSLRKC--VICLSGH  239 (473)
Q Consensus       173 ~i~iwd~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~---------~~~~~~~s~s~dg~i~iwd~~~~~~--~~~~~~h  239 (473)
                      .|.+.+.++.  -........|.-.|+++.|.|....         ....+|++|+-|..|+||+...+.-  -..+.+|
T Consensus       127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H  206 (299)
T KOG1332|consen  127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH  206 (299)
T ss_pred             cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc
Confidence            9999887653  2334567889999999999986321         1236899999999999999887532  2347789


Q ss_pred             cccEEEEEecCC-----CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHH
Q 011978          240 TLAVTCVKWGGD-----GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (473)
Q Consensus       240 ~~~v~~~~~~~~-----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (473)
                      ..-|+.++|.|.     ..+++++.||++.||-.....                                          
T Consensus       207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~------------------------------------------  244 (299)
T KOG1332|consen  207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY------------------------------------------  244 (299)
T ss_pred             chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc------------------------------------------
Confidence            999999998764     257777777777777532100                                          


Q ss_pred             HHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (473)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~  390 (473)
                                                        .....+.+......+..+.||+.|+.|+.++.|+.|.+|.-.
T Consensus       245 ----------------------------------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  245 ----------------------------------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ----------------------------------CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence                                              000011112234568899999999999999999999999643

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=2.1e-21  Score=161.85  Aligned_cols=217  Identities=22%  Similarity=0.386  Sum_probs=157.0

Q ss_pred             CCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCCCcc--------------ccccCCCcCCcEEEEEeceeccCCCCce
Q 011978          148 GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP--------------SGNPLSGHKKWITGISWEPVHLNAPCRR  212 (473)
Q Consensus       148 ~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~v~~i~~~~~~~~~~~~~  212 (473)
                      .|.+.|.++...+ .|+++++|+.||.|.+||+++...              ...-..+|+-.|..+.|-|.    +...
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~----DtGm  116 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI----DTGM  116 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee----cCce
Confidence            5788899999887 689999999999999999976431              11223578888999999996    4468


Q ss_pred             EEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC----CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEE
Q 011978          213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA  288 (473)
Q Consensus       213 ~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~  288 (473)
                      |.+++.|.++++||..+-+....++- ...|.+-+++|-    .++++|..|-.|++.|+..|...+.+.+|...|.++.
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             eecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence            99999999999999998877666542 234666666652    3577888899999999999988877777766666666


Q ss_pred             ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEE
Q 011978          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF  368 (473)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~  368 (473)
                      ++|.+.+                                   .|++|+.|+.+++||++...                  
T Consensus       196 Wsp~~e~-----------------------------------vLatgsaDg~irlWDiRras------------------  222 (397)
T KOG4283|consen  196 WSPSSEW-----------------------------------VLATGSADGAIRLWDIRRAS------------------  222 (397)
T ss_pred             eccCcee-----------------------------------EEEecCCCceEEEEEeeccc------------------
Confidence            6554321                                   35556666666666543211                  


Q ss_pred             CCCCcEEEEEECCCcEEEEeCCCCceEE---EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011978          369 SPDGQWVASASFDKSIKLWNGTTGKFVA---VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK  435 (473)
Q Consensus       369 sp~g~~lasgs~d~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~  435 (473)
                                   |.+++-|...++...   .-..|.+.|+.++|+.||.++++++.|..+++|+...|+
T Consensus       223 -------------gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  223 -------------GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             -------------ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence                         112222322222211   223688999999999999999999999999999998764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=2.2e-21  Score=170.97  Aligned_cols=288  Identities=19%  Similarity=0.251  Sum_probs=207.1

Q ss_pred             ccCCcccEEEEEECCCCC--eEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEE
Q 011978          104 IAGHTEAVLSVAFSPDGR--QLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQC  176 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~--~lat~s~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~i  176 (473)
                      +.-|...|++++|+|...  .+|+|..-|+|-+||+.++.    .+..+..|..+|.+|.|+|. -.++++.++||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            345889999999999864  67888889999999996433    34556789999999999994 468999999999999


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE-EEEecCccccEEEEEecCCC--e
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGDG--V  253 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~--~  253 (473)
                      =|++++.... .+...+.   .+.|+...++.....++.+..-|...+||.+++.. ...+.-|...|.+++++|-.  .
T Consensus       262 ~D~~~~i~e~-v~s~~~d---~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  262 QDFEGNISEE-VLSLDTD---NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeecchhhHH-HhhcCcc---ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            9998754221 1111111   12233334444556677788878999999998765 44556788899999999865  6


Q ss_pred             EEEeecCCeEEEEECCCCcee----eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          254 IYTGSQDCTIKVWETTQGKLI----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      ++|++.|++.+|||+++-..-    -..-.|...|.+..++|..                                    
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~------------------------------------  381 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG------------------------------------  381 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC------------------------------------
Confidence            999999999999998864322    2334577788888888752                                    


Q ss_pred             ceEEEecCCceEEEEeCC-C-CCCCeeeecCcc----c--ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC
Q 011978          330 ERLVSGSDDFTMFLWEPA-V-SKQPKTRMTGHQ----Q--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~-~-~~~~~~~~~~~~----~--~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h  401 (473)
                      ..+++.+.|..|++||.. . ...+...+..|.    .  .....+|.|+..++++|-.-..|-++|...++.+..+-..
T Consensus       382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P  461 (498)
T KOG4328|consen  382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP  461 (498)
T ss_pred             CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence            248999999999999973 1 111112222222    1  2345689999999999999999999999988877665332


Q ss_pred             c-cCEEE-EEEecCCCEEEEE-eCCCcEEEEEC
Q 011978          402 V-GPVYQ-ISWSADSRLLLSG-SKDSTLKVWDI  431 (473)
Q Consensus       402 ~-~~v~~-v~~sp~g~~l~s~-s~Dg~i~iwd~  431 (473)
                      . ..|.+ .+|+|-+..+++| +..|.|+||--
T Consensus       462 ~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  462 ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             cccccccceeecccccceeccCCccceEEEEec
Confidence            2 24444 4799988745554 56778888843

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.5e-21  Score=169.19  Aligned_cols=283  Identities=21%  Similarity=0.341  Sum_probs=197.4

Q ss_pred             EEEECCCCCeEEEEe-C--CCeEEEEeCCCCceeEEEcCCC----CCEEEEEECC-------CCCeEEEEecCCeEEEee
Q 011978          113 SVAFSPDGRQLASGS-G--DTTVRLWDLNTQTPMFKCTGHK----NWVLCIAWSA-------DGKHLVSGSKAGELQCWD  178 (473)
Q Consensus       113 ~~~~sp~~~~lat~s-~--d~~i~iwd~~~~~~~~~~~~~~----~~v~~l~~s~-------dg~~l~s~~~dg~i~iwd  178 (473)
                      .+.+-|+...+++|- .  ...+.+|=.+...+- ....|.    ..-.|++|..       .|+++|.|+.|..|.|||
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD  208 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD  208 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence            345667666666653 2  234444433322211 111222    2235666642       367999999999999999


Q ss_pred             CCCCcc--------------------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC
Q 011978          179 PQTGKP--------------------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (473)
Q Consensus       179 ~~~~~~--------------------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~  238 (473)
                      +.--..                    ......+|+..|-.+.|+...    .+.+++||.|.+|++||+.++++...+..
T Consensus       209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~----~nVLaSgsaD~TV~lWD~~~g~p~~s~~~  284 (463)
T KOG0270|consen  209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF----RNVLASGSADKTVKLWDVDTGKPKSSITH  284 (463)
T ss_pred             cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc----ceeEEecCCCceEEEEEcCCCCcceehhh
Confidence            752110                    111234677777777776532    35799999999999999999999999999


Q ss_pred             ccccEEEEEecCCC--eEEEeecCCeEEEEECCCCcee-eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978          239 HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLI-RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (473)
Q Consensus       239 h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (473)
                      |...|.++.|++..  .|++|+.|+++++.|.+..... ..++. ...|..+++.+.                       
T Consensus       285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEkv~w~~~-----------------------  340 (463)
T KOG0270|consen  285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEKVAWDPH-----------------------  340 (463)
T ss_pred             cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-ccceEEEEecCC-----------------------
Confidence            99999999998754  6999999999999999842111 11111 223555555432                       


Q ss_pred             HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCce
Q 011978          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKF  394 (473)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~  394 (473)
                                  .+..++++.+||+++-+|.+....+...+..|.+.|.++++++. ..++++++.|+.|++|++..-..
T Consensus       341 ------------se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  341 ------------SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             ------------CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence                        24568899999999999999988899999999999999999985 45789999999999999764332


Q ss_pred             --EEEeeCCccCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCce
Q 011978          395 --VAVFRGHVGPVYQISWSADSR-LLLSGSKDSTLKVWDIRTQKL  436 (473)
Q Consensus       395 --~~~~~~h~~~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~~~~  436 (473)
                        +..-.-..+...|.++.|+-. +||.|+..+.++|||+.+...
T Consensus       409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             cccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence              222111234467777788654 677788888899999987543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.5e-22  Score=195.77  Aligned_cols=246  Identities=22%  Similarity=0.380  Sum_probs=192.7

Q ss_pred             cEEEEEECCCCCe----EEEEeCCCeEEEEeCCCC------ceeEEEcCCCCCEEEEEECCCCC-eEEEEecCCeEEEee
Q 011978          110 AVLSVAFSPDGRQ----LASGSGDTTVRLWDLNTQ------TPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWD  178 (473)
Q Consensus       110 ~V~~~~~sp~~~~----lat~s~d~~i~iwd~~~~------~~~~~~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd  178 (473)
                      .-+.++|.+.|..    ||.|..||.|.+||...-      ..+..+..|.+.|..+.|++... .|++|+.||.|.|||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD  145 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD  145 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence            4567899988776    788889999999997541      12445678999999999999765 999999999999999


Q ss_pred             CCCCcccccc-CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc--cEEEEEecCCC--e
Q 011978          179 PQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL--AVTCVKWGGDG--V  253 (473)
Q Consensus       179 ~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~--~  253 (473)
                      +.+-+..... -..-...|.+++|+..    ....|++++.+|.+.|||++..+.+..+..+..  .+..++|+|+.  .
T Consensus       146 lnn~~tP~~~~~~~~~~eI~~lsWNrk----vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq  221 (1049)
T KOG0307|consen  146 LNKPETPFTPGSQAPPSEIKCLSWNRK----VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ  221 (1049)
T ss_pred             cCCcCCCCCCCCCCCcccceEeccchh----hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence            9874432222 1224567899999763    345789999999999999999888777765544  46778898876  4


Q ss_pred             EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      +++++.|..                                                                       
T Consensus       222 l~~As~dd~-----------------------------------------------------------------------  230 (1049)
T KOG0307|consen  222 LLVASGDDS-----------------------------------------------------------------------  230 (1049)
T ss_pred             eeeecCCCC-----------------------------------------------------------------------
Confidence            555544421                                                                       


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA  412 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp  412 (473)
                          +-.|.+||++....+...+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+....+++..+.|+|
T Consensus       231 ----~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p  306 (1049)
T KOG0307|consen  231 ----APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCP  306 (1049)
T ss_pred             ----CceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecC
Confidence                11244555554455566667899999999999965 8999999999999999999999999988889999999999


Q ss_pred             CCC-EEEEEeCCCcEEEEECCCC
Q 011978          413 DSR-LLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       413 ~g~-~l~s~s~Dg~i~iwd~~~~  434 (473)
                      ..- .++.++-||.|-||.+...
T Consensus       307 r~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  307 RNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             CCcchhhhheeccceeeeeeecC
Confidence            654 8888999999999998764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=6.4e-21  Score=167.57  Aligned_cols=276  Identities=22%  Similarity=0.347  Sum_probs=195.5

Q ss_pred             EEECCCCCeEEEEecCC-----eEEEeeCCCCccccccCCCcCCcE----EEEEecee--ccCCCCceEEEeeCCCcEEE
Q 011978          156 IAWSADGKHLVSGSKAG-----ELQCWDPQTGKPSGNPLSGHKKWI----TGISWEPV--HLNAPCRRFVSASKDGDARI  224 (473)
Q Consensus       156 l~~s~dg~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v----~~i~~~~~--~~~~~~~~~~s~s~dg~i~i  224 (473)
                      +..-|+...|+++-.+.     .+++|+.....    .+..|.-.+    -|+.|...  .-...+++++.|+.|..|.|
T Consensus       131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n----lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI  206 (463)
T KOG0270|consen  131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN----LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI  206 (463)
T ss_pred             ceeccCCcEEEEeeccCCceEEEEEEEcCCCcc----eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence            44456666777665432     25556543211    122232212    23344322  22345679999999999999


Q ss_pred             EECCCCeEE---------------------EEecCccccEEEEEecCC--CeEEEeecCCeEEEEECCCCceeeeeeccC
Q 011978          225 WDVSLRKCV---------------------ICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHG  281 (473)
Q Consensus       225 wd~~~~~~~---------------------~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  281 (473)
                      ||+.-...+                     ....+|+.+|..++|+..  +.|++|+.|.+|++||+.+|++..++..|+
T Consensus       207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~  286 (463)
T KOG0270|consen  207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG  286 (463)
T ss_pred             eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence            998643211                     012368889999998864  579999999999999999999999999999


Q ss_pred             ceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccc
Q 011978          282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ  361 (473)
Q Consensus       282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  361 (473)
                      ..|.++.+++.                                   .+..+++|+.|+++.+.|.+........ -.-.+
T Consensus       287 k~Vq~l~wh~~-----------------------------------~p~~LLsGs~D~~V~l~D~R~~~~s~~~-wk~~g  330 (463)
T KOG0270|consen  287 KKVQTLEWHPY-----------------------------------EPSVLLSGSYDGTVALKDCRDPSNSGKE-WKFDG  330 (463)
T ss_pred             CceeEEEecCC-----------------------------------CceEEEeccccceEEeeeccCccccCce-EEecc
Confidence            99999998864                                   3567999999999999998742221111 11235


Q ss_pred             ceeEEEECCCC-cEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceee
Q 011978          362 LVNHVYFSPDG-QWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQ  438 (473)
Q Consensus       362 ~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~  438 (473)
                      .|..++|.|.. ..+.++..||+|+-+|.+.. +++.+++.|.++|.++++++.- .+|+++|.|++|++|++.......
T Consensus       331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~  410 (463)
T KOG0270|consen  331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS  410 (463)
T ss_pred             ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence            68889999965 46677789999999999875 8999999999999999999854 579999999999999986533211


Q ss_pred             cccccC---CCEEEEEEeeCCC-EEEEEeCCCcEEecc
Q 011978          439 DLPGHA---DEVFAVDWSPDGE-KVASGGKDRVLKLWM  472 (473)
Q Consensus       439 ~~~~h~---~~i~~l~~s~d~~-~l~s~~~D~~i~~w~  472 (473)
                       ...|.   +...+.++.|+-- .||.||..+.++||+
T Consensus       411 -v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd  447 (463)
T KOG0270|consen  411 -VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD  447 (463)
T ss_pred             -cccccccccceeecccCCCcceEEEecCccceEEEee
Confidence             11222   2344556666643 567888888899996

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.3e-22  Score=194.95  Aligned_cols=278  Identities=23%  Similarity=0.473  Sum_probs=206.5

Q ss_pred             EEEECCCCC-eEEEE----------eCCCeEEEEeCCCCc------eeEEEcCCCCCEEEEEECCCCCe----EEEEecC
Q 011978          113 SVAFSPDGR-QLASG----------SGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKH----LVSGSKA  171 (473)
Q Consensus       113 ~~~~sp~~~-~lat~----------s~d~~i~iwd~~~~~------~~~~~~~~~~~v~~l~~s~dg~~----l~s~~~d  171 (473)
                      .++|+|++. ++|+|          +.+.++.||.+.-..      +...+. -......|+|.+.|..    |+.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            467888776 44443          345567777654222      112221 2456889999988776    8888899


Q ss_pred             CeEEEeeCCC---Cc--cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--CccccEE
Q 011978          172 GELQCWDPQT---GK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVT  244 (473)
Q Consensus       172 g~i~iwd~~~---~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~  244 (473)
                      |.|.+||...   +.  ........|++.|.++.|++..    ++.+++|+.||.|.|||+..-+......  .....|.
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q----~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~  165 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ----GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK  165 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccC----CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence            9999999865   21  1223457899999999998854    3489999999999999998755444432  2346799


Q ss_pred             EEEecCC--CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978          245 CVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (473)
Q Consensus       245 ~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (473)
                      |++|+..  .+|++++.+|.+.|||++..+.+-.+..+.                                         
T Consensus       166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-----------------------------------------  204 (1049)
T KOG0307|consen  166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-----------------------------------------  204 (1049)
T ss_pred             EeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-----------------------------------------
Confidence            9999854  367888889999999988765433221110                                         


Q ss_pred             cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCC---cEEEEeCCCC-ceEEE
Q 011978          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDK---SIKLWNGTTG-KFVAV  397 (473)
Q Consensus       323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~---~v~lwd~~~~-~~~~~  397 (473)
                                                          ....+..++|+|++ ..|++++.|.   .|.+||++.. ..+++
T Consensus       205 ------------------------------------~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~  248 (1049)
T KOG0307|consen  205 ------------------------------------GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI  248 (1049)
T ss_pred             ------------------------------------CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence                                                01236678999975 4566666553   6999998854 56788


Q ss_pred             eeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC-EEEEEeCCCcEEecc
Q 011978          398 FRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGGKDRVLKLWM  472 (473)
Q Consensus       398 ~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~~w~  472 (473)
                      +++|...|.++.|++.+ .+|+|++.|+.|.+|+.++++.+..+....+.++.+.|.|... .++.++-||.|-|+.
T Consensus       249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence            89999999999999965 8999999999999999999999999988788999999999876 778889999998863

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=6e-21  Score=175.65  Aligned_cols=276  Identities=20%  Similarity=0.360  Sum_probs=207.9

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~  189 (473)
                      .|..++|-|||..|+.+.+ ..+.+||.+.+..+..+++|.+.|.|++|+.||+.+++|+.|+.|.+|+.+-   .+...
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceee
Confidence            7899999999998877654 4799999999999999999999999999999999999999999999998643   22345


Q ss_pred             CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEEC
Q 011978          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWET  268 (473)
Q Consensus       190 ~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~  268 (473)
                      -.|.+.|.++.|+|..     ..+++|+- ...-+|..........  .-...|.+.+|+.||. ++.|-.+|+|.+-+-
T Consensus        90 YSH~D~IQCMsFNP~~-----h~LasCsL-sdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPIT-----HQLASCSL-SDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNK  161 (1081)
T ss_pred             eccCCeeeEeecCchH-----HHhhhcch-hhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence            6799999999999864     35666653 3456676543322211  1234677889999985 778999999999853


Q ss_pred             CCCceeeee---eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978          269 TQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (473)
Q Consensus       269 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  345 (473)
                       +|+....+   -+.+.+|.+++++|....                               ...+.++......++.++.
T Consensus       162 -~gEek~~I~Rpgg~Nspiwsi~~~p~sg~-------------------------------G~~di~aV~DW~qTLSFy~  209 (1081)
T KOG1538|consen  162 -NGEEKVKIERPGGSNSPIWSICWNPSSGE-------------------------------GRNDILAVADWGQTLSFYQ  209 (1081)
T ss_pred             -CCCcceEEeCCCCCCCCceEEEecCCCCC-------------------------------CccceEEEEeccceeEEEE
Confidence             33332223   346778999988875320                               1234567777777887777


Q ss_pred             CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc
Q 011978          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST  425 (473)
Q Consensus       346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~  425 (473)
                      +....-.+.+..+  -...|+.+.|+|.|+..|+.|+.+++|- +.|-.+.++.....+|+.|+..|+++.++.|+.||+
T Consensus       210 LsG~~Igk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  210 LSGKQIGKDRALN--FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT  286 (1081)
T ss_pred             ecceeecccccCC--CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence            6543222222222  2346889999999999999999999995 456667777666779999999999999999999999


Q ss_pred             EEEEECC
Q 011978          426 LKVWDIR  432 (473)
Q Consensus       426 i~iwd~~  432 (473)
                      |-.|++.
T Consensus       287 iACyNl~  293 (1081)
T KOG1538|consen  287 IACYNLI  293 (1081)
T ss_pred             eehhhhH
Confidence            9999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.88  E-value=2.2e-20  Score=170.96  Aligned_cols=139  Identities=29%  Similarity=0.509  Sum_probs=115.6

Q ss_pred             CCceEEEecCCceEEEEeCCCCC------CCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeC
Q 011978          328 APERLVSGSDDFTMFLWEPAVSK------QPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (473)
Q Consensus       328 ~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~  400 (473)
                      .+++|+.+++|+.|++|.+....      .+...+..|...|.++.|+| ....||+++.|.+|++||+.+++....+.+
T Consensus       639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g  718 (1012)
T KOG1445|consen  639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG  718 (1012)
T ss_pred             ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence            35689999999999999875433      34567788999999999999 567899999999999999999999999999


Q ss_pred             CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeccccc-CCCEEEEEEeeCCCEEEEEeCCC
Q 011978          401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGH-ADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       401 h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~h-~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      |++.|.+++|||||+.+|+.+.||+|++|+.++++. +++-.+- ..+-..+.|--||+++++.|-|+
T Consensus       719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            999999999999999999999999999999887543 2222221 12334577888999999988875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.6e-21  Score=162.18  Aligned_cols=216  Identities=23%  Similarity=0.336  Sum_probs=154.5

Q ss_pred             EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (473)
Q Consensus       145 ~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i  224 (473)
                      .+++|.+.|++|+|+.||++|++++.|+.|++|++++-.     ...|..    +..                       
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----~~eHr~----~R~-----------------------  128 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----NKEHRC----IRQ-----------------------  128 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----hhhhhH----hhc-----------------------
Confidence            467999999999999999999999999999999987632     222310    000                       


Q ss_pred             EECCCCeEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978          225 WDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                       ++        -.+|   -+.+.|.||.  .+++.....++++|.....+-     +                       
T Consensus       129 -nv--------e~dh---pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d-----G-----------------------  168 (420)
T KOG2096|consen  129 -NV--------EYDH---PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD-----G-----------------------  168 (420)
T ss_pred             -cc--------cCCC---ceEEEECCCcceEEEEEccCCEEEEEEeeeccc-----C-----------------------
Confidence             00        0112   2456677775  456666777888886432110     0                       


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~  382 (473)
                                                       +......-||-      ......|+-.+..+-...++.+|++++.|.
T Consensus       169 ---------------------------------~~~~~~v~~D~------~~f~~kh~v~~i~iGiA~~~k~imsas~dt  209 (420)
T KOG2096|consen  169 ---------------------------------SGSHHFVHIDN------LEFERKHQVDIINIGIAGNAKYIMSASLDT  209 (420)
T ss_pred             ---------------------------------CCCcccccccc------cccchhcccceEEEeecCCceEEEEecCCC
Confidence                                             00000011120      011123444555566677889999999999


Q ss_pred             cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC---CCc-----eeecccccCCCEEEEEEee
Q 011978          383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR---TQK-----LKQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       383 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~---~~~-----~~~~~~~h~~~i~~l~~s~  454 (473)
                      .|.+|+++ |+.+..+......-+..+.||+|+++|+++---.|++|.+-   .|.     ....++||...|..++|||
T Consensus       210 ~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn  288 (420)
T KOG2096|consen  210 KICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN  288 (420)
T ss_pred             cEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence            99999998 88888877666666778899999999999988889999863   222     2457899999999999999


Q ss_pred             CCCEEEEEeCCCcEEecc
Q 011978          455 DGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       455 d~~~l~s~~~D~~i~~w~  472 (473)
                      +.+.++++|.||+++||+
T Consensus       289 ~S~r~vtvSkDG~wriwd  306 (420)
T KOG2096|consen  289 SSTRAVTVSKDGKWRIWD  306 (420)
T ss_pred             CcceeEEEecCCcEEEee
Confidence            999999999999999996

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=4e-20  Score=160.82  Aligned_cols=308  Identities=26%  Similarity=0.383  Sum_probs=206.6

Q ss_pred             cccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCce---------eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978          108 TEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTP---------MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (473)
Q Consensus       108 ~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~---------~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw  177 (473)
                      ..+|..+.|.++.. .+|||+.|..|+||-++...+         +..+..|...|.++.|+|+|..|++|+.+|++.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            35789999999877 999999999999998764321         23467899999999999999999999999999999


Q ss_pred             eCC--------C-----C--ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcccc
Q 011978          178 DPQ--------T-----G--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA  242 (473)
Q Consensus       178 d~~--------~-----~--~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~  242 (473)
                      ...        +     .  -.....+.+|.+.+..+.|.|     +...+++++.|.++++||+..+.....+.+|...
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-----d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y  167 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-----DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY  167 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-----CCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence            765        2     0  012334677999999999988     4457899999999999999999999999999999


Q ss_pred             EEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc-cCCCcccCCHHHHHHHHHhh
Q 011978          243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF-DHTGKQYSSPEEMKKAALER  320 (473)
Q Consensus       243 v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  320 (473)
                      +..++|++-+ .+++-+.|...+.+.+...+.+.....  ..+...+..+........+ |.+.+.          .+.+
T Consensus       168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~--~~m~~~~~~~~e~~s~rLfhDeTlks----------FFrR  235 (434)
T KOG1009|consen  168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL--DIMPAKAFNEREGKSTRLFHDETLKS----------FFRR  235 (434)
T ss_pred             cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee--eEeeecccCCCCcceeeeeecCchhh----------hhhh
Confidence            9999999866 577888888777776554433322210  0000001111000000000 000000          0000


Q ss_pred             hhcccCCCCceEEE-------ecC--CceEEEEeCCCCCCCeeeecCcccceeEEEECC------------------CCc
Q 011978          321 YNKIKGNAPERLVS-------GSD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------------------DGQ  373 (473)
Q Consensus       321 ~~~~~~~~~~~l~~-------~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp------------------~g~  373 (473)
                      . .+. .....+++       +..  -++.++++....++|...+.+.......+.|+|                  -+.
T Consensus       236 l-sfT-PdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl  313 (434)
T KOG1009|consen  236 L-SFT-PDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL  313 (434)
T ss_pred             c-ccC-CCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence            0 000 00011111       111  234455655555556666666555666666555                  223


Q ss_pred             EEEEEECCCcEEEEeCCCCceEEEee-CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011978          374 WVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK  435 (473)
Q Consensus       374 ~lasgs~d~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~  435 (473)
                      .+|.++.+ .|.+||.++..++.... -|-..|++++|++||..|+..|.||..-+-.+...+
T Consensus       314 vfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  314 VFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             EEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence            46666654 79999999888776654 488899999999999999999999988877666543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=2.9e-18  Score=165.66  Aligned_cols=327  Identities=38%  Similarity=0.653  Sum_probs=244.3

Q ss_pred             ccccCCc-ccEEEEEE-CCCCC-eEEEEeC-CCeEEEEeCCC-CceeEEEcCCCCCEEEEEECCCCCeEEEEec-CCeEE
Q 011978          102 ATIAGHT-EAVLSVAF-SPDGR-QLASGSG-DTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQ  175 (473)
Q Consensus       102 ~~~~gh~-~~V~~~~~-sp~~~-~lat~s~-d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~  175 (473)
                      ..+.++. ..+..+.+ ++++. .++..+. |+.+++||... ......+..|...|.+++|+|+++.+++++. |+.++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  181 (466)
T COG2319         102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK  181 (466)
T ss_pred             EEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceE
Confidence            3444433 36777777 88888 4555444 99999999988 6667778899999999999999998888885 99999


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE-EecCccccEEEEEecCCC-e
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDG-V  253 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~-~  253 (473)
                      +|+..+++.. ..+.+|...+.++.|.|...    ..+++++.|+.+++||...+.... .+.+|.... ...|.+++ .
T Consensus       182 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~----~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  255 (466)
T COG2319         182 LWDLRTGKPL-STLAGHTDPVSSLAFSPDGG----LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSL  255 (466)
T ss_pred             EEEcCCCceE-EeeccCCCceEEEEEcCCcc----eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCE
Confidence            9999875443 34566999999999985321    245556999999999998888877 688888775 44788887 6


Q ss_pred             EEEeecCCeEEEEECCCCce-eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          254 IYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                      +++++.|+.+++|+...... ...+..|...+.++.+.+.                                    ...+
T Consensus       256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------~~~~  299 (466)
T COG2319         256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD------------------------------------GKLL  299 (466)
T ss_pred             EEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCC------------------------------------CCEE
Confidence            77899999999999986654 4444566677777766542                                    2345


Q ss_pred             EEecCCceEEEEeCCCCCCCeeee-cCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW  410 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~  410 (473)
                      ++++.|+.+.+|+........... ..|...+..+.|.+++..++.+ ..|+.+++|+.............. .+..+.+
T Consensus       300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  378 (466)
T COG2319         300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSF  378 (466)
T ss_pred             EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEE
Confidence            567778889999765544332222 4677778999994343556655 688999999998877333333222 2889999


Q ss_pred             ecCCCEEEE-EeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          411 SADSRLLLS-GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       411 sp~g~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++ ...+.. +..++.+.+|+............+...+....+++++..+++++.+..+++|.
T Consensus       379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (466)
T COG2319         379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD  440 (466)
T ss_pred             CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence            98 544444 68899999999998777666554436789999999999999999999999996

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.88  E-value=2.7e-22  Score=188.69  Aligned_cols=275  Identities=27%  Similarity=0.437  Sum_probs=202.2

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      +..+.||...|.|+.|...|.++++|+.|..++||.+++..++..+.||++.|+.++.+.+...+++++.|..|++|.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC----ccccEEEEEecCCC-eEE
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG----HTLAVTCVKWGGDG-VIY  255 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~----h~~~v~~~~~~~~~-~l~  255 (473)
                      ++..+. .+.+|++.|++++|+|         +.+.+.||++++||.+-.-.++.-..    ...-+.++.|..++ .+.
T Consensus       263 ~~~pvs-vLrghtgavtaiafsP---------~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~  332 (1113)
T KOG0644|consen  263 DGAPVS-VLRGHTGAVTAIAFSP---------RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL  332 (1113)
T ss_pred             CCchHH-HHhccccceeeeccCc---------cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence            987654 5889999999999998         34778999999999872111111000    00112222222222 233


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      |++.|+.-..|....                                                                 
T Consensus       333 Tgs~d~ea~n~e~~~-----------------------------------------------------------------  347 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQ-----------------------------------------------------------------  347 (1113)
T ss_pred             cccCCcccccchhhH-----------------------------------------------------------------
Confidence            444444433332211                                                                 


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS  414 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g  414 (473)
                                   .       ..+...+.-+.++.+ ..+.+++-.+-.+.+|++.+|.+++.+.+|...+..+.++|-+
T Consensus       348 -------------l-------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn  407 (1113)
T KOG0644|consen  348 -------------L-------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN  407 (1113)
T ss_pred             -------------h-------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence                         0       000000011111111 1456666677889999999999999999999999999999954


Q ss_pred             -CEEEEEeCCCcEEEEECCCCceeecc-cccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          415 -RLLLSGSKDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       415 -~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                       +...+++.||...|||+..+..++.. .+| ..+..-.||+||+.++....-|.+.|.
T Consensus       408 ~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  408 PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             cHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence             55668899999999999887665433 344 557788999999999988888888775

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=4.4e-21  Score=165.16  Aligned_cols=204  Identities=26%  Similarity=0.484  Sum_probs=156.2

Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC----------------CeEEEEecCccccEEEEEecC--
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----------------RKCVICLSGHTLAVTCVKWGG--  250 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~----------------~~~~~~~~~h~~~v~~~~~~~--  250 (473)
                      ...|.+.++.+.-.+..   .....++-+..|.|.|||+..                .+.++++.+|...=..+.|+|  
T Consensus       147 ~i~h~g~~NRvr~~~~~---~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLG---NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK  223 (440)
T ss_pred             ccccccccceeeecccC---CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence            34566667776655533   223566778899999999753                244566777777777788876  


Q ss_pred             CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978          251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (473)
Q Consensus       251 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (473)
                      .|.+++|..-+.|++|...+|...                                                        
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~--------------------------------------------------------  247 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWK--------------------------------------------------------  247 (440)
T ss_pred             ccccccCccccceEeeeeccCcee--------------------------------------------------------
Confidence            456777777777777765544321                                                        


Q ss_pred             eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCC---ceEEEeeCCccCEE
Q 011978          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTG---KFVAVFRGHVGPVY  406 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~---~~~~~~~~h~~~v~  406 (473)
                                          .....+.+|...|..++|||. ..+||+||.||+|+|||++.+   .++.+ +.|.+-|+
T Consensus       248 --------------------vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN  306 (440)
T KOG0302|consen  248 --------------------VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN  306 (440)
T ss_pred             --------------------ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence                                001224468889999999995 568999999999999999988   33333 88999999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCC---CceeecccccCCCEEEEEEeeCC-CEEEEEeCCCcEEecc
Q 011978          407 QISWSADSRLLLSGSKDSTLKVWDIRT---QKLKQDLPGHADEVFAVDWSPDG-EKVASGGKDRVLKLWM  472 (473)
Q Consensus       407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~---~~~~~~~~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~~w~  472 (473)
                      -+.|+-+-.+||+|+.||+++|||++.   ++...+++-|..+|+++.|+|.. ..|+++|.|.+|.+|+
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD  376 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD  376 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence            999999888999999999999999986   44566788899999999999864 5778999999999996

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=6.7e-20  Score=154.90  Aligned_cols=278  Identities=22%  Similarity=0.321  Sum_probs=200.4

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCCCc-----cccccCCCc-------CCcEEEEEeceec--cCCCCceEEEee
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-----PSGNPLSGH-------KKWITGISWEPVH--LNAPCRRFVSAS  217 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~-------~~~v~~i~~~~~~--~~~~~~~~~s~s  217 (473)
                      -...+.|||||..|++-+.|..+.+|++-...     ........|       ...|..-.|-+..  ..++...+++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            34567899999999999999999999874211     000011111       2234455554422  223456889999


Q ss_pred             CCCcEEEEECCCCeEEEEecC--ccc---cEEEEEecCCCeEEEeecCCeEEEEEC-CCCceeeee-------eccCceE
Q 011978          218 KDGDARIWDVSLRKCVICLSG--HTL---AVTCVKWGGDGVIYTGSQDCTIKVWET-TQGKLIREL-------KGHGHWV  284 (473)
Q Consensus       218 ~dg~i~iwd~~~~~~~~~~~~--h~~---~v~~~~~~~~~~l~s~~~d~~i~~wd~-~~~~~~~~~-------~~~~~~v  284 (473)
                      .+.-|++||.-+++....+.+  |..   +..|++|++||.-+-++..++|++||. +.|+.....       .+....+
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            999999999999887665543  333   345899999997666778899999998 666543221       1224456


Q ss_pred             EEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccccee
Q 011978          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (473)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  364 (473)
                      .+++++|..                                   +..++.++....+-|+.-. ...+...+.+|.+.|+
T Consensus       211 sc~a~sP~~-----------------------------------~~~~a~gsY~q~~giy~~~-~~~pl~llggh~gGvT  254 (406)
T KOG2919|consen  211 SCFAFSPMD-----------------------------------SKTLAVGSYGQRVGIYNDD-GRRPLQLLGGHGGGVT  254 (406)
T ss_pred             eeeeccCCC-----------------------------------CcceeeecccceeeeEecC-CCCceeeecccCCCee
Confidence            666666541                                   2346777777776666533 3456677789999999


Q ss_pred             EEEECCCCcEEEEEEC-CCcEEEEeCCC-CceEEEeeCCcc-CEEEEE--EecCCCEEEEEeCCCcEEEEECCC-Cceee
Q 011978          365 HVYFSPDGQWVASASF-DKSIKLWNGTT-GKFVAVFRGHVG-PVYQIS--WSADSRLLLSGSKDSTLKVWDIRT-QKLKQ  438 (473)
Q Consensus       365 ~v~~sp~g~~lasgs~-d~~v~lwd~~~-~~~~~~~~~h~~-~v~~v~--~sp~g~~l~s~s~Dg~i~iwd~~~-~~~~~  438 (473)
                      .++|+++|+.|.+|+. |-.|..||++. +..+..+..|.+ .-..+-  ..|+|++||+|+.||.|++||+.. +....
T Consensus       255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s  334 (406)
T KOG2919|consen  255 HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS  334 (406)
T ss_pred             eEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence            9999999999999975 66899999985 456667777765 333344  468999999999999999999987 55556


Q ss_pred             cccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978          439 DLPGHADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       439 ~~~~h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                      .+..|.+-++.++++|--..+|+++..
T Consensus       335 v~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  335 VTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccccccccccceecCcccceeeeccCc
Confidence            666788999999999998888888764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=3.6e-21  Score=171.47  Aligned_cols=237  Identities=21%  Similarity=0.389  Sum_probs=180.8

Q ss_pred             CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc---C--CCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP---L--SGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (473)
Q Consensus       148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~---~--~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i  222 (473)
                      .|..-|.+++.|...+++++|+. |-|++||+..... ..+   +  ......|..+...     ++++.+++|+.-.++
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-k~PvsqLdcl~rdnyiRSckL~-----pdgrtLivGGeastl  489 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-KSPVSQLDCLNRDNYIRSCKLL-----PDGRTLIVGGEASTL  489 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-CCccccccccCcccceeeeEec-----CCCceEEecccccee
Confidence            57777888999988899999875 8899999864310 011   1  1112334444433     467889999999999


Q ss_pred             EEEECCCCeEE--EEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978          223 RIWDVSLRKCV--ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (473)
Q Consensus       223 ~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (473)
                      .|||+......  ..+..-.-++..++.++|. ..+++..||.|.|||+.+...+++++                     
T Consensus       490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq---------------------  548 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ---------------------  548 (705)
T ss_pred             eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc---------------------
Confidence            99999764332  2233333455667778886 46788899999999988765555443                     


Q ss_pred             ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE
Q 011978          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (473)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs  379 (473)
                                                                                ||.+.+.||.+++||..|-||+
T Consensus       549 ----------------------------------------------------------GhtDGascIdis~dGtklWTGG  570 (705)
T KOG0639|consen  549 ----------------------------------------------------------GHTDGASCIDISKDGTKLWTGG  570 (705)
T ss_pred             ----------------------------------------------------------CCCCCceeEEecCCCceeecCC
Confidence                                                                      5566778899999999999999


Q ss_pred             CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEE
Q 011978          380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV  459 (473)
Q Consensus       380 ~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l  459 (473)
                      .|++||-||+++++.+.... ....|.++.++|++.+|+.|-..+.+.+-.... .....+..|++-|.+|.|.+.|+++
T Consensus       571 lDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  571 LDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             Cccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCcee
Confidence            99999999999998665543 346799999999999999999999888877654 3345667789999999999999999


Q ss_pred             EEEeCCCcEEecc
Q 011978          460 ASGGKDRVLKLWM  472 (473)
Q Consensus       460 ~s~~~D~~i~~w~  472 (473)
                      +|.|.|+.+..|.
T Consensus       649 vStGkDnlLnawr  661 (705)
T KOG0639|consen  649 VSTGKDNLLNAWR  661 (705)
T ss_pred             eecCchhhhhhcc
Confidence            9999999999885

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=5.7e-20  Score=154.77  Aligned_cols=280  Identities=18%  Similarity=0.296  Sum_probs=198.2

Q ss_pred             EEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE
Q 011978          153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC  232 (473)
Q Consensus       153 v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~  232 (473)
                      ..|+.|++.|.+||+|+.||.|.|||..+.. ....+.+|..+|.+++|++     +++.++|+|.|-.+++||+..+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~-----dgr~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSR-----DGRKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecC-----CCCEeeeecCCceeEEEeccCCCc
Confidence            6899999999999999999999999998876 4457899999999999998     678999999999999999999998


Q ss_pred             EEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978          233 VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (473)
Q Consensus       233 ~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (473)
                      ++.+. ...+|+.+.|.|..  ..++.-.+..-.+-++..++.  .         .+..+++..+...+.          
T Consensus       100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~---------~Lp~d~d~dln~sas----------  157 (405)
T KOG1273|consen  100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--S---------VLPKDDDGDLNSSAS----------  157 (405)
T ss_pred             eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--e---------eccCCCccccccccc----------
Confidence            77664 45688999998743  344333333333333332111  0         011111110000000          


Q ss_pred             HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (473)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~  390 (473)
                                 .......++.+++|...|.+.+++....+.....-......|..+.|+-.|+.|+.-+.|+.||.|+.+
T Consensus       158 -----------~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  158 -----------HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             -----------cccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence                       000112356799999999999999765433222111223568889999999999999999999999875


Q ss_pred             C-------CceE--EEeeC--CccCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeecccccC-CCEEEEEEeeCCC
Q 011978          391 T-------GKFV--AVFRG--HVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGE  457 (473)
Q Consensus       391 ~-------~~~~--~~~~~--h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~d~~  457 (473)
                      .       +++.  +.++.  ..-.=.+++||.||.|++.++. -..++||.-..|.+.+.+.|.. .....+.|+|-..
T Consensus       227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp  306 (405)
T KOG1273|consen  227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP  306 (405)
T ss_pred             hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee
Confidence            2       1111  11111  1123356889999999887764 4579999999999999998876 4677899999988


Q ss_pred             EEEEEeCCCcEEecc
Q 011978          458 KVASGGKDRVLKLWM  472 (473)
Q Consensus       458 ~l~s~~~D~~i~~w~  472 (473)
                      .+++- ..|.+.+|.
T Consensus       307 ~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  307 IIASI-ASGVVYIWA  320 (405)
T ss_pred             eeeec-cCCceEEEE
Confidence            88888 678999995

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2e-20  Score=161.88  Aligned_cols=320  Identities=17%  Similarity=0.256  Sum_probs=219.6

Q ss_pred             HhHHHhcCCCcccEEEEEEEeceeEEEeecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCC------CCc
Q 011978           68 GSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN------TQT  141 (473)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~------~~~  141 (473)
                      ..||.+.++...+.+.-.|+|...-    ..-|..-+.+|.+.|+++.|+.++++||+|+.|..+++|++.      +.+
T Consensus        20 ~~FL~QR~i~~~~~~~k~F~~~~~~----R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K   95 (609)
T KOG4227|consen   20 ESFLCQREIGSVKSVVKTFRPDFQH----RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK   95 (609)
T ss_pred             eeeeeecccCCChhhhhhhchhhhh----cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC
Confidence            3444445555444444444443221    234556678999999999999999999999999999999974      334


Q ss_pred             eeEEEc-CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC---CcEEEEEeceeccCCCCceEEEee
Q 011978          142 PMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK---KWITGISWEPVHLNAPCRRFVSAS  217 (473)
Q Consensus       142 ~~~~~~-~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~~~~~~~s~s  217 (473)
                      |+.... .|...|.||+|....+.+++|..+++|...|+++.+.+.  ...|.   +.|..+..+|.     .+.|++.+
T Consensus        96 PI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~-----DN~~~~~t  168 (609)
T KOG4227|consen   96 PIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHPT-----DNTLIVVT  168 (609)
T ss_pred             CceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee--eecccCcccceeecccCCC-----CceEEEEe
Confidence            444332 455789999999999999999999999999999877543  23343   47888887775     35899999


Q ss_pred             CCCcEEEEECCCCe---EEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccc
Q 011978          218 KDGDARIWDVSLRK---CVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE  292 (473)
Q Consensus       218 ~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  292 (473)
                      .++.|.+||.+...   .+..+..-......+.|+|..  +|++.+..+-+.+||.+..+.-                  
T Consensus       169 ~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~------------------  230 (609)
T KOG4227|consen  169 RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP------------------  230 (609)
T ss_pred             cCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch------------------
Confidence            99999999998654   122233333455667787754  6778888888888887643210                  


Q ss_pred             ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC
Q 011978          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (473)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g  372 (473)
                                               +.++...                             .-+......-.++.|+|+|
T Consensus       231 -------------------------~~~~~~~-----------------------------~~L~~~~~~~M~~~~~~~G  256 (609)
T KOG4227|consen  231 -------------------------VYQRSMF-----------------------------KGLPQENTEWMGSLWSPSG  256 (609)
T ss_pred             -------------------------HHhhhcc-----------------------------ccCcccchhhhheeeCCCC
Confidence                                     0000000                             0000000112456789999


Q ss_pred             cEEEEEECCCcEEEEeCCCCceE-EEeeCCc-------cCEEEEEEecCCCEEEEEeCCCcEEEEECCC-----C-----
Q 011978          373 QWVASASFDKSIKLWNGTTGKFV-AVFRGHV-------GPVYQISWSADSRLLLSGSKDSTLKVWDIRT-----Q-----  434 (473)
Q Consensus       373 ~~lasgs~d~~v~lwd~~~~~~~-~~~~~h~-------~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~-----~-----  434 (473)
                      +.+.+--....-.+||+.+..+. ..+ .|.       ..+.+++|-.| .-+++||.+=.|++|.+..     |     
T Consensus       257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG  334 (609)
T KOG4227|consen  257 NQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIG  334 (609)
T ss_pred             CeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccC
Confidence            88887665555567787764432 222 232       23566777644 4599999999999998742     1     


Q ss_pred             -------------ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          435 -------------KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       435 -------------~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                                   +....++||..-++.+.|+|...+|+|.|-.+.++||.
T Consensus       335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence                         12346789999999999999999999999999999995

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=7.5e-20  Score=152.27  Aligned_cols=253  Identities=21%  Similarity=0.362  Sum_probs=185.2

Q ss_pred             ccccCCcccEEEEEECCCCCeE-EEEeC---C----CeEEEEeCCCCc---------eeEEEc-CCCCCEEEEEECCCCC
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQL-ASGSG---D----TTVRLWDLNTQT---------PMFKCT-GHKNWVLCIAWSADGK  163 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~l-at~s~---d----~~i~iwd~~~~~---------~~~~~~-~~~~~v~~l~~s~dg~  163 (473)
                      ..+.-|.+.|+.++-+|..+.+ +|+..   |    -.+.||.+....         .+..+. .+-+.|.|+.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            4556688999999999977654 55532   2    247899885321         122222 3445899999999999


Q ss_pred             eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE
Q 011978          164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV  243 (473)
Q Consensus       164 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v  243 (473)
                      .|++-. |..|.+|+++.+..+...+                       ..+++.                   ++....
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev-----------------------~ss~s~-------------------e~~~~f  173 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEV-----------------------LSSESA-------------------EMRHSF  173 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheee-----------------------cccccc-------------------ccccee
Confidence            999876 8999999998765421100                       011111                   122233


Q ss_pred             EEEEecC--CCeEEEeecCCeEEEEECCCCceeeee-eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhh
Q 011978          244 TCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (473)
Q Consensus       244 ~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (473)
                      ++-+|+|  ++.-+....|+++..||+++.+....+ ..|++.|..+.+.|+.                           
T Consensus       174 tsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk---------------------------  226 (370)
T KOG1007|consen  174 TSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK---------------------------  226 (370)
T ss_pred             cccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCc---------------------------
Confidence            4455665  455566777899999999987766555 4688889888887752                           


Q ss_pred             hhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCC-------
Q 011978          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG-------  392 (473)
Q Consensus       321 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~-------  392 (473)
                              ...|++|++|+.+++||.+..+.+...+.+|.-+|.+|.|+| ..++|.+|+.|..|.+|...+-       
T Consensus       227 --------q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~  298 (370)
T KOG1007|consen  227 --------QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIE  298 (370)
T ss_pred             --------eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccc
Confidence                    236899999999999999999999999999999999999999 4678999999999999954210       


Q ss_pred             ----------------------ceEEEeeCCccCEEEEEEec-CCCEEEEEeCCCcEEEEECC
Q 011978          393 ----------------------KFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       393 ----------------------~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~i~iwd~~  432 (473)
                                            ..+.++..|...|++++||. |.-.+|+-|.||.+.|=.+.
T Consensus       299 ~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  299 FEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                                  12446778999999999987 45578899999999876554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.86  E-value=1.5e-20  Score=154.39  Aligned_cols=303  Identities=17%  Similarity=0.247  Sum_probs=195.7

Q ss_pred             ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC
Q 011978          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (473)
Q Consensus       141 ~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg  220 (473)
                      .|.+.+..|...|+|+.|..++ +|++|...|.+++|++++.+......-.|...|+.+.-.|      ++.+.+-+.|+
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p------~d~l~tqgRd~   77 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP------NDSLDTQGRDP   77 (323)
T ss_pred             CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecC------CcchhhcCCCc
Confidence            4567788999999999998776 4999999999999999987755433335666777665443      35788999999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCC-eEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (473)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (473)
                      .+.+|++.....+..   |...+.++.|.+-. +...+... ..-.++-+.....+...  ...-..+.+.++...    
T Consensus        78 ~L~lw~ia~s~~i~i---~Si~~nslgFCrfS-l~~~~k~~eqll~yp~rgsde~h~~D--~g~~tqv~i~dd~~~----  147 (323)
T KOG0322|consen   78 LLILWTIAYSAFISI---HSIVVNSLGFCRFS-LVKKPKNSEQLLEYPSRGSDETHKQD--GGDTTQVQIADDSER----  147 (323)
T ss_pred             eEEEEEccCcceEEE---eeeeccccccccce-eccCCCcchhheecCCcccchhhhhc--cCccceeEccCchhc----
Confidence            999999987554432   33444444443221 11111111 11111111100000000  000000111110000    


Q ss_pred             ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC---------CeeeecCcccceeEEEECC
Q 011978          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---------PKTRMTGHQQLVNHVYFSP  370 (473)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~v~~v~~sp  370 (473)
                       ...+...           ...........-.++.|-.+|.+.+||+..+..         .......|...|.++.|.+
T Consensus       148 -~Klgsvm-----------c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas  215 (323)
T KOG0322|consen  148 -SKLGSVM-----------CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS  215 (323)
T ss_pred             -cccCcee-----------eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech
Confidence             0000000           000000111123577889999999999876421         1223456888999999998


Q ss_pred             CCcEEEEEECCCcEEEEeCCC--CceE--EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC
Q 011978          371 DGQWVASASFDKSIKLWNGTT--GKFV--AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE  446 (473)
Q Consensus       371 ~g~~lasgs~d~~v~lwd~~~--~~~~--~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~  446 (473)
                      .-..=++|+.+..+..|++..  +.+.  ....-.+..|..+...||++.+|+++.|+.||||+.++...+..++-|.+.
T Consensus       216 ~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag  295 (323)
T KOG0322|consen  216 SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG  295 (323)
T ss_pred             hhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc
Confidence            666667888888888998753  3221  122223456889999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          447 VFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       447 i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |++++|+||...+|.+|.|.+|-+|.
T Consensus       296 vn~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  296 VNAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             eeEEEeCCCCchhhhccCCceEEeee
Confidence            99999999999999999999999996

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1e-20  Score=171.17  Aligned_cols=264  Identities=21%  Similarity=0.373  Sum_probs=186.1

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC--------CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~--------~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i  174 (473)
                      ++..|.+.|..++|+|....|++|+.||++++|++..        .+++..+.+|.++|.|++..+++.++++|+-||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            6678999999999999999999999999999999932        24678899999999999999999999999999999


Q ss_pred             EEeeCC------CC---ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC--ccccE
Q 011978          175 QCWDPQ------TG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAV  243 (473)
Q Consensus       175 ~iwd~~------~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~v  243 (473)
                      +.|++-      +.   ......+.||.+.+-.+.+++..     .++++|+.||++++|+...... .++..  ....-
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-----~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P  442 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-----DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP  442 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccc-----cceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence            999543      11   12334678999999888887643     5799999999999999765443 11111  01111


Q ss_pred             EEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978          244 TCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (473)
Q Consensus       244 ~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
                      +++.+....  ..++...-+.--+++...+..+                                               
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~-----------------------------------------------  475 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDL-----------------------------------------------  475 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhhe-----------------------------------------------
Confidence            222221111  0011111111111111111000                                               


Q ss_pred             hcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC
Q 011978          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (473)
Q Consensus       322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h  401 (473)
                               .++..+.+...                .....++.+..+|.+.+.+++..|+.|+++|..+++.+.....|
T Consensus       476 ---------~~~~s~~~~~~----------------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~  530 (577)
T KOG0642|consen  476 ---------LIFESSASPGP----------------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH  530 (577)
T ss_pred             ---------eeccccCCCcc----------------cccCccceEEecCCCCeeEecccCCceecccccccccchheeec
Confidence                     01111111000                01124666788999999999999999999999999999999999


Q ss_pred             ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC
Q 011978          402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA  444 (473)
Q Consensus       402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~  444 (473)
                      ...++++++.|+|-+|++++.|+.+++|.+....+......|.
T Consensus       531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            9999999999999999999999999999987766655554443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.9e-18  Score=139.44  Aligned_cols=278  Identities=18%  Similarity=0.310  Sum_probs=194.5

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCC----------CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      .|.+-+++|.+++|+.|+.+|+|.+..++.          +.++...++|+++|..|+|.  ..+|++|+. |.|+-|.+
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence            466678999999999999999999998753          23455668999999999998  357777765 99999987


Q ss_pred             CCCccc-------cccCCCcC-----CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 011978          180 QTGKPS-------GNPLSGHK-----KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (473)
Q Consensus       180 ~~~~~~-------~~~~~~~~-----~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  247 (473)
                      +.....       .....-|.     -.|+++...|.     .+-++.++.|+.+.-||+++++...+++||+..|.|+.
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~-----enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS-----ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccC-----CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence            643221       11112222     23455554442     34566777999999999999999999999999999998


Q ss_pred             e-cCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccC
Q 011978          248 W-GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (473)
Q Consensus       248 ~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (473)
                      - +.++.+++|+.||++|+||.++++.+..+.....                                            
T Consensus       164 ~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~--------------------------------------------  199 (325)
T KOG0649|consen  164 GRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN--------------------------------------------  199 (325)
T ss_pred             ecccCcceeecCCCccEEEEeccccceeEEeccccC--------------------------------------------
Confidence            7 5677999999999999999999988765532110                                            


Q ss_pred             CCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE
Q 011978          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (473)
Q Consensus       327 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~  406 (473)
                                               +...-.....+|.+++.+  ..++++|+. ..+.+|++++.++..+|. -.+++.
T Consensus       200 -------------------------~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~  250 (325)
T KOG0649|consen  200 -------------------------PNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVH  250 (325)
T ss_pred             -------------------------hhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEEEe-ccccee
Confidence                                     000000112456666654  568888764 469999999998888776 345788


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCC-CEEEEEeCCCcEEec
Q 011978          407 QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG-EKVASGGKDRVLKLW  471 (473)
Q Consensus       407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~~w  471 (473)
                      .+.|-.|  .+++++..+.|.-|.+. +.+...++.....-+...|+..- ++|-.++-.+.+.++
T Consensus       251 ~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  251 LVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             Eeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            8888644  56677777789989775 34444444444445666665332 445555666666654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=6.7e-19  Score=146.66  Aligned_cols=249  Identities=20%  Similarity=0.345  Sum_probs=169.3

Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCC-------CcEEEEECCCCe---------EEEEec-CccccEEEEEecC
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKD-------GDARIWDVSLRK---------CVICLS-GHTLAVTCVKWGG  250 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-------g~i~iwd~~~~~---------~~~~~~-~h~~~v~~~~~~~  250 (473)
                      .+..|.+.|-.++-+|.    +.+.|+++-.+       -.+.||.+....         ++..+. .+-+.|.|+.|.|
T Consensus        58 vf~h~agEvw~las~P~----d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P  133 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPF----DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP  133 (370)
T ss_pred             hhhcCCcceehhhcCCC----CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC
Confidence            34445555655555553    22345554331       246789876432         222232 3456899999999


Q ss_pred             CCeEEEeecCCeEEEEECCCCce-eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          251 DGVIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       251 ~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      ++.-+.+-.|..|.+|++..+.. +..+......-      -...+..+.+.+                        ...
T Consensus       134 ns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e------~~~~ftsg~Wsp------------------------HHd  183 (370)
T KOG1007|consen  134 NSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAE------MRHSFTSGAWSP------------------------HHD  183 (370)
T ss_pred             CCCeeEEeccCceEEEEcccCcchheeeccccccc------ccceecccccCC------------------------CCc
Confidence            88644555599999999987755 22222111000      000111111111                        111


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQ  407 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~  407 (473)
                      ...+....|+++..||.+...+....-..|...|+.+.|+|+-+ +|++++.||.|++||.+.. .++..+.+|..+|++
T Consensus       184 gnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  184 GNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA  263 (370)
T ss_pred             cceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence            22344556899999999977776677778888999999999865 6889999999999999865 467889999999999


Q ss_pred             EEEec-CCCEEEEEeCCCcEEEEECCCCc-----------------------------eeecccccCCCEEEEEEeeCCC
Q 011978          408 ISWSA-DSRLLLSGSKDSTLKVWDIRTQK-----------------------------LKQDLPGHADEVFAVDWSPDGE  457 (473)
Q Consensus       408 v~~sp-~g~~l~s~s~Dg~i~iwd~~~~~-----------------------------~~~~~~~h~~~i~~l~~s~d~~  457 (473)
                      |.|+| ..+++.+||.|..|.+|.+.+-.                             .++++..|.+.|++++||.-..
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP  343 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP  343 (370)
T ss_pred             EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence            99999 56789999999999999653210                             1235667999999999997666


Q ss_pred             E-EEEEeCCCcEEe
Q 011978          458 K-VASGGKDRVLKL  470 (473)
Q Consensus       458 ~-l~s~~~D~~i~~  470 (473)
                      + +||-+.||++.|
T Consensus       344 WiFASLSYDGRviI  357 (370)
T KOG1007|consen  344 WIFASLSYDGRVII  357 (370)
T ss_pred             eeEEEeccCceEEe
Confidence            5 589999999876

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=4.4e-19  Score=158.09  Aligned_cols=260  Identities=17%  Similarity=0.254  Sum_probs=194.7

Q ss_pred             cEEEEEECCCCCe-EEEEeCCCeEEEEeCCCCc---eeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc
Q 011978          110 AVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQT---PMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (473)
Q Consensus       110 ~V~~~~~sp~~~~-lat~s~d~~i~iwd~~~~~---~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~  184 (473)
                      .++++.|+..... +|+.++|..|++|.-....   +... ..+.  .-.|++......++++|+..+.|+|||++ .+.
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl  112 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR-AKL  112 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH-HHH
Confidence            3888888876643 3455689999999755442   2222 2222  33455544555899999999999999998 444


Q ss_pred             ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc-cccEEEEEecCCC--eEEEeecCC
Q 011978          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG--VIYTGSQDC  261 (473)
Q Consensus       185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~--~l~s~~~d~  261 (473)
                      ....+.+|...|+++.++-     ...++++++..|.|.|..+.++.....+.-. ...|.-+.|++..  .|.+++.+|
T Consensus       113 ~hr~lkdh~stvt~v~YN~-----~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G  187 (673)
T KOG4378|consen  113 IHRFLKDHQSTVTYVDYNN-----TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKG  187 (673)
T ss_pred             HhhhccCCcceeEEEEecC-----CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCC
Confidence            5567899999999998764     3468999999999999999887666555433 2345577787654  577899999


Q ss_pred             eEEEEECCCCceeee-eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          262 TIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      .|.+||+.....+.. .+.|..+...++++|..                                   +..+++-+.|..
T Consensus       188 ~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn-----------------------------------e~l~vsVG~Dkk  232 (673)
T KOG4378|consen  188 AVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN-----------------------------------EALLVSVGYDKK  232 (673)
T ss_pred             eEEEEeccCCCcccchhhhccCCcCcceecCCc-----------------------------------cceEEEecccce
Confidence            999999876555443 36677777777777652                                   336889999999


Q ss_pred             EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCC
Q 011978          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADS  414 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g  414 (473)
                      |.+||....+........  .+...++|+++|.+|+.|...|.|..||++.. .++.++..|...|++|+|-|..
T Consensus       233 i~~yD~~s~~s~~~l~y~--~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  233 INIYDIRSQASTDRLTYS--HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEEeecccccccceeeec--CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            999998754433333333  35789999999999999999999999999854 5788888999999999998764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=2.1e-18  Score=150.25  Aligned_cols=296  Identities=18%  Similarity=0.349  Sum_probs=190.6

Q ss_pred             CCCEEEEEECCCCC-eEEEEecCCeEEEeeCCCCcccc--------ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC
Q 011978          150 KNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSG--------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (473)
Q Consensus       150 ~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg  220 (473)
                      ..+|.++.|.+++. .|++|+.|..|++|.+..+....        ..+..|...|+.+.|+|     .++.+++|+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-----~gelLASg~D~g   87 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-----DGELLASGGDGG   87 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-----CcCeeeecCCCc
Confidence            35788999998776 99999999999999876543221        24678999999999987     567899999999


Q ss_pred             cEEEEECC--------C--------CeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCce
Q 011978          221 DARIWDVS--------L--------RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW  283 (473)
Q Consensus       221 ~i~iwd~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  283 (473)
                      .+.+|...        +        ......+.+|...|..++|.+++ .+++++.|..+++||+..|+....+..|.+.
T Consensus        88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y  167 (434)
T KOG1009|consen   88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY  167 (434)
T ss_pred             eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence            99999765        2        12345667899999999999988 5889999999999999999999999999999


Q ss_pred             EEEEEecccceee-eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe----cCCceEEEEeCCCCCCCeeeecC
Q 011978          284 VNSLALSTEYALR-TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG----SDDFTMFLWEPAVSKQPKTRMTG  358 (473)
Q Consensus       284 v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~  358 (473)
                      +..+++.|..... .-..+.....+...       +.+.  +....-..+.+.    ......+++--..          
T Consensus       168 vqgvawDpl~qyv~s~s~dr~~~~~~~~-------~~~~--~~~~~~~~m~~~~~~~~e~~s~rLfhDeT----------  228 (434)
T KOG1009|consen  168 VQGVAWDPLNQYVASKSSDRHPEGFSAK-------LKQV--IKRHGLDIMPAKAFNEREGKSTRLFHDET----------  228 (434)
T ss_pred             cceeecchhhhhhhhhccCcccceeeee-------eeee--eeeeeeeEeeecccCCCCcceeeeeecCc----------
Confidence            9999887643221 11111100000000       0000  000000000000    0001111111000          


Q ss_pred             cccceeEEEECCCCcEEEEEEC----CC-----cEEEEeCCC-CceEEEeeCCccCEEEEEEec----------------
Q 011978          359 HQQLVNHVYFSPDGQWVASASF----DK-----SIKLWNGTT-GKFVAVFRGHVGPVYQISWSA----------------  412 (473)
Q Consensus       359 ~~~~v~~v~~sp~g~~lasgs~----d~-----~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp----------------  412 (473)
                      -..-...++|+|+|.++++.+.    ++     +.++|+-.. .++...+.+-.-++..+.|+|                
T Consensus       229 lksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~  308 (434)
T KOG1009|consen  229 LKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFV  308 (434)
T ss_pred             hhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccc
Confidence            0122456789999999998642    22     234444321 122333333334455555553                


Q ss_pred             --CCCEEEEEeCCCcEEEEECCCCceeeccc-ccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          413 --DSRLLLSGSKDSTLKVWDIRTQKLKQDLP-GHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       413 --~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                        -+-.+|.++. +.|++||..+...+.... -|-..|+.++|++||..|+..|.||.+-+
T Consensus       309 lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  309 LPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             cccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence              2334555554 569999998866654433 37789999999999999999999997643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=3.4e-19  Score=150.97  Aligned_cols=257  Identities=20%  Similarity=0.294  Sum_probs=185.8

Q ss_pred             CCcccEEEEEECCCC----CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCC-CeEEEEecCCeEEEeeCC
Q 011978          106 GHTEAVLSVAFSPDG----RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       106 gh~~~V~~~~~sp~~----~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~~  180 (473)
                      .|...-..++|+.|.    .++|.|+.-|.|||.|+.+++....+.+|...|..+.|.|+. +++++++.|..|++|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            477778889998653    478888999999999999999888899999999999999975 578899999999999999


Q ss_pred             CCcccccc--CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE------E-------------------
Q 011978          181 TGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC------V-------------------  233 (473)
Q Consensus       181 ~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~------~-------------------  233 (473)
                      +..++...  ..+|...|-++.|++     ++.++++|+.|.++++|++...+.      .                   
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~-----~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f  241 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSL-----DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF  241 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcC-----CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence            98765432  578999999999876     567999999999999999873210      0                   


Q ss_pred             E---EecCccccEEEEEecCCCeEEEeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCC
Q 011978          234 I---CLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (473)
Q Consensus       234 ~---~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  309 (473)
                      .   +..-|...|.|+.|-.+ ++++=+-++.|..|...+ ++.+...+..+.                           
T Consensus       242 p~fst~diHrnyVDCvrw~gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es---------------------------  293 (385)
T KOG1034|consen  242 PDFSTTDIHRNYVDCVRWFGD-FILSKSCENAIVCWKPGKLEESIHNVKPPES---------------------------  293 (385)
T ss_pred             ccccccccccchHHHHHHHhh-heeecccCceEEEEecchhhhhhhccCCCcc---------------------------
Confidence            0   11246677778877753 677777788888886421 111111100000                           


Q ss_pred             HHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (473)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~  389 (473)
                                         ...        .+.-++..          .-.-+....+|.|-+++||.|...|.|.+||+
T Consensus       294 -------------------~~T--------i~~~~~~~----------~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL  336 (385)
T KOG1034|consen  294 -------------------ATT--------ILGEFDYP----------MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL  336 (385)
T ss_pred             -------------------cee--------eeeEeccC----------ccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence                               000        00001110          00112334567788999999999999999999


Q ss_pred             CCCceE--EEee--CCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          390 TTGKFV--AVFR--GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       390 ~~~~~~--~~~~--~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      +..++.  .++.  .....|...+||-||..|+...+|++|.-||..
T Consensus       337 ~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  337 DNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            876542  1221  123579999999999999999999999999853

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=8.8e-19  Score=157.64  Aligned_cols=266  Identities=17%  Similarity=0.279  Sum_probs=178.4

Q ss_pred             CCCCCEEEEEECCCCCeEEEEecCCeEEEe-eCCCCccccccCCCcCCcEEEEEe-ce--eccCCCCceEEEeeCCCcEE
Q 011978          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQTGKPSGNPLSGHKKWITGISW-EP--VHLNAPCRRFVSASKDGDAR  223 (473)
Q Consensus       148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~~v~~i~~-~~--~~~~~~~~~~~s~s~dg~i~  223 (473)
                      .|..-|.|+.|+.+...+.+ +.|..+.+| |+.+.....  ..--...+....+ -+  ..-......|+.++.||.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~-~dDh~~~~~~~~~~~s~~~--~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~   88 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFV-SDDHQIFKWSDVSRDSVEV--AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV   88 (737)
T ss_pred             ccceeEEeecccccceEEEe-ccCceEEEeecccchhhhh--hhCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence            45556778999887655554 455555554 544332111  1001111111100 00  00112235799999999999


Q ss_pred             EEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978          224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       224 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                      +.+- .++.......|.+++.|-.|++||. |++++.||.|++|. ++|-+..++...+..|.|+++.|+.         
T Consensus        89 il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S---------  157 (737)
T KOG1524|consen   89 ILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNS---------  157 (737)
T ss_pred             Eecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCC---------
Confidence            8863 3444455678999999999999995 99999999999997 4555555566677789999887752         


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~  382 (473)
                                                ...+.+.+  +.+.+=.+. ......+-..|.+.|.++.|+|...++++|+.|-
T Consensus       158 --------------------------~~vl~c~g--~h~~IKpL~-~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~  208 (737)
T KOG1524|consen  158 --------------------------NSIVFCQG--GHISIKPLA-ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF  208 (737)
T ss_pred             --------------------------CceEEecC--CeEEEeecc-cccceeEEeccCcEEEEeecCccccceeecCCce
Confidence                                      11223322  222222211 1223345568999999999999999999999999


Q ss_pred             cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978          383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG  462 (473)
Q Consensus       383 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~  462 (473)
                      ..++||.. |..+..-..|.-+|++++|+|+ ..++.+|.. +.+        . .  +...+.|+.++||+||..+++|
T Consensus       209 kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R--------~-~--~p~~GSifnlsWS~DGTQ~a~g  274 (737)
T KOG1524|consen  209 RFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR--------F-S--SPRVGSIFNLSWSADGTQATCG  274 (737)
T ss_pred             eEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eee--------e-c--CCCccceEEEEEcCCCceeecc
Confidence            99999965 6667777789999999999999 666666542 333        1 1  1234689999999999999999


Q ss_pred             eCCCcEEe
Q 011978          463 GKDRVLKL  470 (473)
Q Consensus       463 ~~D~~i~~  470 (473)
                      ...|.+.+
T Consensus       275 t~~G~v~~  282 (737)
T KOG1524|consen  275 TSTGQLIV  282 (737)
T ss_pred             ccCceEEE
Confidence            99987754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.9e-19  Score=158.20  Aligned_cols=291  Identities=21%  Similarity=0.328  Sum_probs=219.1

Q ss_pred             EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEE
Q 011978          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (473)
Q Consensus       144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~  223 (473)
                      .++..|.+.|..|.|+..|..|++|+.|..|.+||+..++.......+|...|..-.|.|..   +...+++++.||.++
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s---~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS---GDRTIVTSSRDGQVR  212 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC---CCcCceeccccCcee
Confidence            35678999999999999999999999999999999999888777889999999888888743   567899999999999


Q ss_pred             EEECCCCe-E--EEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeee---eccCc---eEEEEEeccc
Q 011978          224 IWDVSLRK-C--VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIREL---KGHGH---WVNSLALSTE  292 (473)
Q Consensus       224 iwd~~~~~-~--~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~---~v~~~~~~~~  292 (473)
                      +=.+.... +  ...+..|.+.|..++..|+.  .+++++.|+.+.-+|++++.....+   +.+..   ...+++..|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            87764322 2  34556788899999988765  5899999999999999877543322   11111   2233333332


Q ss_pred             ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC-----------CeeeecCccc
Q 011978          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----------PKTRMTGHQQ  361 (473)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~  361 (473)
                                                         .+..+++++.|-.+++||.+.-..           +........-
T Consensus       293 -----------------------------------nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v  337 (559)
T KOG1334|consen  293 -----------------------------------NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPV  337 (559)
T ss_pred             -----------------------------------CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcc
Confidence                                               233567777777777777542211           1111112334


Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCC--C----------ceE-EEeeCCcc--CEEEEEE-ecCCCEEEEEeCCCc
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTT--G----------KFV-AVFRGHVG--PVYQISW-SADSRLLLSGSKDST  425 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~--~----------~~~-~~~~~h~~--~v~~v~~-sp~g~~l~s~s~Dg~  425 (473)
                      .|++++|+.++.-|.+.-.|-.|+++...-  |          ..+ ..|+||..  .|-.|-| -|...|+++||.-|.
T Consensus       338 ~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh  417 (559)
T KOG1334|consen  338 NITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH  417 (559)
T ss_pred             cceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccce
Confidence            699999998776666667777899995332  2          122 24889965  4667765 578899999999999


Q ss_pred             EEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          426 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       426 i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |.||+-.+++.+.-+.+-..-|+||.=+|--..|||.|-|.-||||.
T Consensus       418 IFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  418 IFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             EEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence            99999999999988888777899999999999999999999999995

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=4.4e-18  Score=143.08  Aligned_cols=208  Identities=26%  Similarity=0.517  Sum_probs=154.8

Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC----CeEEEEecCccccEEEEEecCC--C-eEEEeecC
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----RKCVICLSGHTLAVTCVKWGGD--G-VIYTGSQD  260 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~~~d  260 (473)
                      ...+|.+.|.++.|.+     .++++++|+.|++++|||.+.    -.+....+.|.+.|..+.|.+.  | .+++++.|
T Consensus         8 i~s~h~DlihdVs~D~-----~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D   82 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDF-----YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD   82 (361)
T ss_pred             cccCCcceeeeeeecc-----cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence            3467888899998876     568999999999999999643    3566677889999999999753  3 58899999


Q ss_pred             CeEEEEECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978          261 CTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  339 (473)
                      ++++||.-.    ...++.|+ .++.                                                      
T Consensus        83 rtv~iWEE~----~~~~~~~~~~Wv~------------------------------------------------------  104 (361)
T KOG2445|consen   83 RTVSIWEEQ----EKSEEAHGRRWVR------------------------------------------------------  104 (361)
T ss_pred             Cceeeeeec----ccccccccceeEE------------------------------------------------------
Confidence            999999732    11222222 1221                                                      


Q ss_pred             eEEEEeCCCCCCCeeeecCcccceeEEEECC--CCcEEEEEECCCcEEEEeCCCCc------eEEEee-------CCccC
Q 011978          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASFDKSIKLWNGTTGK------FVAVFR-------GHVGP  404 (473)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~lasgs~d~~v~lwd~~~~~------~~~~~~-------~h~~~  404 (473)
                                   ...+......|+.|.|.|  -|-.||+++.||.+|||+.....      +...++       .+..+
T Consensus       105 -------------~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~  171 (361)
T KOG2445|consen  105 -------------RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP  171 (361)
T ss_pred             -------------EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence                         122333445789999999  47899999999999999865432      222232       45668


Q ss_pred             EEEEEEecC---CCEEEEEeCC-----CcEEEEECCCC----ceeecccccCCCEEEEEEeeCC----CEEEEEeCCCcE
Q 011978          405 VYQISWSAD---SRLLLSGSKD-----STLKVWDIRTQ----KLKQDLPGHADEVFAVDWSPDG----EKVASGGKDRVL  468 (473)
Q Consensus       405 v~~v~~sp~---g~~l~s~s~D-----g~i~iwd~~~~----~~~~~~~~h~~~i~~l~~s~d~----~~l~s~~~D~~i  468 (473)
                      ..||.|+|.   ..+||.|+.+     +.++||.....    ....++.+|.++|++++|.|.-    ..||+++.|| |
T Consensus       172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v  250 (361)
T KOG2445|consen  172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V  250 (361)
T ss_pred             ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence            899999984   4578888876     47899976542    3456888999999999999973    4789999999 9


Q ss_pred             Eecc
Q 011978          469 KLWM  472 (473)
Q Consensus       469 ~~w~  472 (473)
                      +||+
T Consensus       251 ~I~~  254 (361)
T KOG2445|consen  251 RIFK  254 (361)
T ss_pred             EEEE
Confidence            9986

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.2e-18  Score=152.41  Aligned_cols=247  Identities=14%  Similarity=0.246  Sum_probs=181.4

Q ss_pred             CCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCcee--EEEcCCC-CCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPM--FKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~--~~~~~~~-~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      --.-+|.++.|.|+|. .+++++.....+.||+.+.+..  ....+++ ..+.....|+++++|+..+..|.|.+.-..+
T Consensus       255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT  334 (514)
T KOG2055|consen  255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT  334 (514)
T ss_pred             eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence            3456899999999999 8899999999999999876532  2223443 4567788999999999999999999998888


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc-cEEEEEecCCC-eEEEeec
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-AVTCVKWGGDG-VIYTGSQ  259 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~~~~-~l~s~~~  259 (473)
                      ++.+...  .-.+.|..+.|..     ++..++.++.+|.|.+||++...|+..+..... .-++++.+.++ ++++|+.
T Consensus       335 ~eli~s~--KieG~v~~~~fsS-----dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~  407 (514)
T KOG2055|consen  335 KELITSF--KIEGVVSDFTFSS-----DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD  407 (514)
T ss_pred             hhhhhee--eeccEEeeEEEec-----CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC
Confidence            7654321  2245677777763     567899999999999999999988877653211 22344545555 6788888


Q ss_pred             CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  339 (473)
                      .|.|.|||..+-..                                                                  
T Consensus       408 ~GiVNIYd~~s~~~------------------------------------------------------------------  421 (514)
T KOG2055|consen  408 SGIVNIYDGNSCFA------------------------------------------------------------------  421 (514)
T ss_pred             cceEEEeccchhhc------------------------------------------------------------------
Confidence            88888888543100                                                                  


Q ss_pred             eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC--CCcEEEEeCCCCceEEEeeC---CccCEEEEEEecCC
Q 011978          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRG---HVGPVYQISWSADS  414 (473)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~--d~~v~lwd~~~~~~~~~~~~---h~~~v~~v~~sp~g  414 (473)
                             ....+|...+..-...|++++|+||++.||.+|.  +..+|+-.+.+......+..   .-+.|+|++|||.|
T Consensus       422 -------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s  494 (514)
T KOG2055|consen  422 -------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS  494 (514)
T ss_pred             -------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC
Confidence                   0001122222233346899999999999998875  56899988877665555443   34579999999999


Q ss_pred             CEEEEEeCCCcEEEEECC
Q 011978          415 RLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd~~  432 (473)
                      .+||.|..+|.+.+|.+.
T Consensus       495 G~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  495 GYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ceEEeecCCCceeeEeec
Confidence            999999999999999764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.1e-17  Score=161.99  Aligned_cols=287  Identities=21%  Similarity=0.332  Sum_probs=198.2

Q ss_pred             CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCC---CCCEEEEEECC--CCCeEEEEecCCeEEEeeCC
Q 011978          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH---KNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~---~~~v~~l~~s~--dg~~l~s~~~dg~i~iwd~~  180 (473)
                      +...+-..+.|+|-...++++.+.-.|+|||++.++.+..+..+   ...|+.|.+-.  |...+++|+.||.|+||+--
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            33445567889999999999988889999999988776555432   35688888754  55689999999999999743


Q ss_pred             CC--cccc-----ccCCCcC----CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEe
Q 011978          181 TG--KPSG-----NPLSGHK----KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKW  248 (473)
Q Consensus       181 ~~--~~~~-----~~~~~~~----~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~  248 (473)
                      ..  +...     ..+.++.    +.---+.|..     .+..++++|.-+.|+|||.....+...+. +-...|++++-
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-----~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-----QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhh-----hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence            21  1100     0111111    1001123433     23567777778999999999887776654 33445666654


Q ss_pred             cC--CCeEEEeecCCeEEEEECCCCc---eeeeeeccCce--EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978          249 GG--DGVIYTGSQDCTIKVWETTQGK---LIRELKGHGHW--VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (473)
Q Consensus       249 ~~--~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
                      +.  .+.+++|-.||.+++||.+...   .+...+.|..+  |..+.+.+.                             
T Consensus      1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~----------------------------- 1267 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ----------------------------- 1267 (1387)
T ss_pred             cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC-----------------------------
Confidence            42  2478899999999999987543   34445555554  555544332                             


Q ss_pred             hcccCCCCceEEEecCCceEEEEeCCCC-CCCeeeecCcc--c-ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEE
Q 011978          322 NKIKGNAPERLVSGSDDFTMFLWEPAVS-KQPKTRMTGHQ--Q-LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV  397 (473)
Q Consensus       322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~--~-~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~  397 (473)
                            .-..+++|+.||.|++||++.. .........|.  + ..+++..|++...+|+|+. +.|+||++. |+.+..
T Consensus      1268 ------G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~ 1339 (1387)
T KOG1517|consen 1268 ------GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNI 1339 (1387)
T ss_pred             ------CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcc
Confidence                  1225999999999999999874 22222222232  2 4899999999999999998 899999975 444444


Q ss_pred             eeC-------CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978          398 FRG-------HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       398 ~~~-------h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                      ++.       ..+.+.|++|+|..-+||+|+.|.+|.||.....
T Consensus      1340 ~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            432       2356899999999999999999999999977543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.81  E-value=1.8e-17  Score=157.60  Aligned_cols=269  Identities=18%  Similarity=0.281  Sum_probs=184.4

Q ss_pred             CCeEEEEeCCCC-ceeEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEeeCCCCcc-----ccccCCCcCCcEEEEEe
Q 011978          129 DTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKP-----SGNPLSGHKKWITGISW  201 (473)
Q Consensus       129 d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~i~~  201 (473)
                      ++.+.||++... .+...+. -...|.|+.|+|. ..+++.|..+|+|.+||++.+..     +......|...+..+.|
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            347999999766 3333332 4567999999995 56777888999999999987654     12234678899999999


Q ss_pred             ceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE------ec------CccccEEEEEecCCC--eEEEeecCCeEEEEE
Q 011978          202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC------LS------GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWE  267 (473)
Q Consensus       202 ~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~------~~------~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd  267 (473)
                      .....   ...|++++.||.|+.|+++.-.....      ..      .....+++++|.+..  .++.|+.+|.|.--.
T Consensus       300 ~~~~~---~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~  376 (555)
T KOG1587|consen  300 LQNEH---NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGC  376 (555)
T ss_pred             eccCC---CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEe
Confidence            87432   25799999999999998765432110      00      112345666665432  456666666654321


Q ss_pred             CCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (473)
Q Consensus       268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  347 (473)
                      ....+.-.                                                                       .
T Consensus       377 r~g~~~~~-----------------------------------------------------------------------~  385 (555)
T KOG1587|consen  377 RKGYTPAP-----------------------------------------------------------------------E  385 (555)
T ss_pred             ccCCcccc-----------------------------------------------------------------------c
Confidence            11000000                                                                       0


Q ss_pred             CCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC-CCceEEEeeCCccCEEEEEEecCC-CEEEEEeCCCc
Q 011978          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQISWSADS-RLLLSGSKDST  425 (473)
Q Consensus       348 ~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~~~~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~  425 (473)
                      ...........|.+.|.++.++|-+..+...+.|-+++||... ...++..+..+...|++++|||.. ..++++..||.
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~  465 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN  465 (555)
T ss_pred             ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence            0001223445677889999999977655555559999999977 666777777788889999999965 57888899999


Q ss_pred             EEEEECCCC--ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          426 LKVWDIRTQ--KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       426 i~iwd~~~~--~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +.+||+...  ....+..-+....+.+.|++.|+.|+.|+..|++.+|.
T Consensus       466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            999999653  23333333455667788999999999999999999875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=2.3e-18  Score=156.15  Aligned_cols=252  Identities=22%  Similarity=0.326  Sum_probs=176.8

Q ss_pred             EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (473)
Q Consensus       145 ~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i  224 (473)
                      .+..|.+.|..++|.|-...|++++.||+|.+|+++....       +.                               
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-------s~-------------------------------  330 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-------SA-------------------------------  330 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-------cc-------------------------------
Confidence            4556777777788877777788888888888887743110       00                               


Q ss_pred             EECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC----------ceeeeeeccCceEEEEEecccc
Q 011978          225 WDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG----------KLIRELKGHGHWVNSLALSTEY  293 (473)
Q Consensus       225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~  293 (473)
                        ....+.++++.+|.++|.|+.+..++ .+++|+.||+|+.|++...          .....+.+|...++.++++.. 
T Consensus       331 --~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-  407 (577)
T KOG0642|consen  331 --EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-  407 (577)
T ss_pred             --ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-
Confidence              01234566788999999999999887 5999999999999965421          123456778888887776643 


Q ss_pred             eeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-
Q 011978          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-  372 (473)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-  372 (473)
                                                         .++|++++.||++++|++..................++++-... 
T Consensus       408 -----------------------------------~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~  452 (577)
T KOG0642|consen  408 -----------------------------------KDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRP  452 (577)
T ss_pred             -----------------------------------ccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchh
Confidence                                               45799999999999999754433111111112334455554322 


Q ss_pred             cEEEEEECCCcEEEEeCCCCceEEEeeCC-------ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCC
Q 011978          373 QWVASASFDKSIKLWNGTTGKFVAVFRGH-------VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD  445 (473)
Q Consensus       373 ~~lasgs~d~~v~lwd~~~~~~~~~~~~h-------~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~  445 (473)
                      ...++...-+.-.+++...+..+..+...       ...++.+.++|.+.+.+++-.|+.|+++|..+++.+.....|..
T Consensus       453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~  532 (577)
T KOG0642|consen  453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD  532 (577)
T ss_pred             HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc
Confidence            11222112222233344444444444321       23577889999999999999999999999999999999999999


Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          446 EVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       446 ~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .++++++.|+|-+|++++.|+.+++|.
T Consensus       533 svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  533 SVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             eecceeecCCCceEEeecCCceeehhh
Confidence            999999999999999999999999995

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6.1e-18  Score=144.25  Aligned_cols=269  Identities=14%  Similarity=0.225  Sum_probs=182.3

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECC--CCCeEEEEecCCeEEEeeCCCCcccccc-CCCcC-CcE
Q 011978          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNP-LSGHK-KWI  196 (473)
Q Consensus       121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~-~~v  196 (473)
                      ..+|++...|+|++||..++..+..++++...+..+.|..  ....+.+|+.||+|++||++........ ...+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4578888999999999999988889999999999999976  3567889999999999999875543322 23333 233


Q ss_pred             EEEEeceeccCCCCceEEEee----CCCcEEEEECCCCeE-EEE-ecCccccEEEEEecCCC--eEEEeecCCeEEEEEC
Q 011978          197 TGISWEPVHLNAPCRRFVSAS----KDGDARIWDVSLRKC-VIC-LSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWET  268 (473)
Q Consensus       197 ~~i~~~~~~~~~~~~~~~s~s----~dg~i~iwd~~~~~~-~~~-~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~  268 (473)
                      .+++-     +...+.+++|+    .+-.+.+||++..+. +.. ...|...|+++.|.|..  +|++|+.||-+.+||+
T Consensus       121 ~~ld~-----nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  121 ICLDL-----NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             eEeec-----cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            33332     11223455443    356799999998776 333 45799999999999864  7999999999999997


Q ss_pred             CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCC
Q 011978          269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (473)
Q Consensus       269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  348 (473)
                      .....-                                                                          
T Consensus       196 ~~d~Ee--------------------------------------------------------------------------  201 (376)
T KOG1188|consen  196 KKDNEE--------------------------------------------------------------------------  201 (376)
T ss_pred             CCCcch--------------------------------------------------------------------------
Confidence            643100                                                                          


Q ss_pred             CCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEEeeCCc------------c-CEEEEEEec-C
Q 011978          349 SKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHV------------G-PVYQISWSA-D  413 (473)
Q Consensus       349 ~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~------------~-~v~~v~~sp-~  413 (473)
                        ........|...|.++.|..++ +.|.+-+.+.+..+|+++.+.+...+....            . -|.+  .+| +
T Consensus       202 --DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~--~~~~~  277 (376)
T KOG1188|consen  202 --DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE--HSPGD  277 (376)
T ss_pred             --hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec--ccCCC
Confidence              0000111233457778887665 458888889999999998877544332210            0 1111  123 3


Q ss_pred             CCEEEEEeC-CCcEEEEECC---CC---ceeecccc-cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          414 SRLLLSGSK-DSTLKVWDIR---TQ---KLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       414 g~~l~s~s~-Dg~i~iwd~~---~~---~~~~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ...++.++. -|...++-+.   ++   +....+.| |..-|.++.|...+..+.|||+||.+.+|.
T Consensus       278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            445555544 4555555433   22   33445566 555667788888889999999999999996

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=2.5e-16  Score=146.41  Aligned_cols=268  Identities=15%  Similarity=0.179  Sum_probs=164.5

Q ss_pred             EEEeCCCeEEEEeCCC-Cc--eeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCC-CCccccccCCCcCCcEEE
Q 011978          124 ASGSGDTTVRLWDLNT-QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQ-TGKPSGNPLSGHKKWITG  198 (473)
Q Consensus       124 at~s~d~~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~  198 (473)
                      ++...|+.|++||+.+ ++  .+..+. +......++++|++++|++++ .++.|.+|+++ +++...............
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            3446789999999964 32  223332 335577899999999987765 47889999986 333211000011123345


Q ss_pred             EEeceeccCCCCceEEEee-CCCcEEEEECCCC----eEEEEecCccccEEEEEecCCC-eE-EEeecCCeEEEEECCCC
Q 011978          199 ISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLR----KCVICLSGHTLAVTCVKWGGDG-VI-YTGSQDCTIKVWETTQG  271 (473)
Q Consensus       199 i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~-~l-~s~~~d~~i~~wd~~~~  271 (473)
                      +.+.|     +++++++++ .++.+.+||+...    +.+..+.+ .....++.+++++ .+ ++...++.|.+||+.+.
T Consensus        85 i~~~~-----~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         85 ISTDH-----QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             EEECC-----CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            55554     455566554 4889999998642    22222222 2345667788887 44 45556789999998652


Q ss_pred             ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978          272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ  351 (473)
Q Consensus       272 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  351 (473)
                      ..+......                                                   .                   
T Consensus       159 g~l~~~~~~---------------------------------------------------~-------------------  168 (330)
T PRK11028        159 GHLVAQEPA---------------------------------------------------E-------------------  168 (330)
T ss_pred             CcccccCCC---------------------------------------------------c-------------------
Confidence            211100000                                                   0                   


Q ss_pred             CeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCCC--Cc--eEEEeeCC------ccCEEEEEEecCCCEEEEE
Q 011978          352 PKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT--GK--FVAVFRGH------VGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       352 ~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~~--~~--~~~~~~~h------~~~v~~v~~sp~g~~l~s~  420 (473)
                       .....  ......++|+|+|++++++.. +++|.+||+..  ++  .+..+..+      ......+.++|+|++|+++
T Consensus       169 -~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        169 -VTTVE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             -eecCC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence             00000  012456899999999988876 89999999873  33  23333221      1223468899999999888


Q ss_pred             e-CCCcEEEEECCCCc----eeecccccCCCEEEEEEeeCCCEEEEEeC-CCcEEecc
Q 011978          421 S-KDSTLKVWDIRTQK----LKQDLPGHADEVFAVDWSPDGEKVASGGK-DRVLKLWM  472 (473)
Q Consensus       421 s-~Dg~i~iwd~~~~~----~~~~~~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~~w~  472 (473)
                      . .++.|.+|++....    ........ .....+.++|||++|+++.. +++|.+|.
T Consensus       246 ~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        246 DRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             cCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            5 47899999986432    12222211 13457899999999987775 88999984

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.79  E-value=3.1e-17  Score=151.51  Aligned_cols=271  Identities=18%  Similarity=0.300  Sum_probs=197.4

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK  231 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~  231 (473)
                      .|..++|-|||..|+.+. +..+.+||.+.|... +++.+|++.|++++|+.     ++.+|++|+.|..|.+|.-...-
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~ll-qtLKgHKDtVycVAys~-----dGkrFASG~aDK~VI~W~~klEG   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLL-QPLKGHKDTVYCVAYAK-----DGKRFASGSADKSVIIWTSKLEG   86 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccc-cccccccceEEEEEEcc-----CCceeccCCCceeEEEecccccc
Confidence            688999999999888765 468999999998755 57899999999999976     67899999999999999865432


Q ss_pred             EEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978          232 CVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (473)
Q Consensus       232 ~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (473)
                      .+.  ..|...|.|+.|+|-.. +++++ =...-+|...+....+.  .....+.+.++..+                  
T Consensus        87 ~Lk--YSH~D~IQCMsFNP~~h~LasCs-LsdFglWS~~qK~V~K~--kss~R~~~CsWtnD------------------  143 (1081)
T KOG1538|consen   87 ILK--YSHNDAIQCMSFNPITHQLASCS-LSDFGLWSPEQKSVSKH--KSSSRIICCSWTND------------------  143 (1081)
T ss_pred             eee--eccCCeeeEeecCchHHHhhhcc-hhhccccChhhhhHHhh--hhheeEEEeeecCC------------------
Confidence            222  36899999999998654 55554 33455676543222111  11223444444333                  


Q ss_pred             HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC-CeeeecCcccceeEEEECCCC-----cEEEEEECCCcE
Q 011978          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDG-----QWVASASFDKSI  384 (473)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~v~~sp~g-----~~lasgs~d~~v  384 (473)
                                        ...++-|-.+|+|.+-+-..... ...+..|....|.+++|+|..     ..++......++
T Consensus       144 ------------------GqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL  205 (1081)
T KOG1538|consen  144 ------------------GQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL  205 (1081)
T ss_pred             ------------------CcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence                              34578888899998875332222 223445667889999999963     467777777788


Q ss_pred             EEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978          385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       385 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      .++.+. |+.+..-+.-.-...|+.+.|+|.++..|+.|+.+++|. +.|-.+.++......|+.+...|++++++.|+.
T Consensus       206 SFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq  283 (1081)
T KOG1538|consen  206 SFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ  283 (1081)
T ss_pred             EEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEc
Confidence            887764 454443332233456789999999999999999999994 456666777666778999999999999999999


Q ss_pred             CCcEEecc
Q 011978          465 DRVLKLWM  472 (473)
Q Consensus       465 D~~i~~w~  472 (473)
                      ||+|..|+
T Consensus       284 DGTiACyN  291 (1081)
T KOG1538|consen  284 DGTIACYN  291 (1081)
T ss_pred             cCeeehhh
Confidence            99998764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=2.9e-17  Score=139.13  Aligned_cols=270  Identities=20%  Similarity=0.334  Sum_probs=197.5

Q ss_pred             EEEEECCCCCeEEEEeCCCeEEEEeCCCC-------cee-----EEEc-CCCCCEEEEEEC-------CCCCeEEEEecC
Q 011978          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQ-------TPM-----FKCT-GHKNWVLCIAWS-------ADGKHLVSGSKA  171 (473)
Q Consensus       112 ~~~~~sp~~~~lat~s~d~~i~iwd~~~~-------~~~-----~~~~-~~~~~v~~l~~s-------~dg~~l~s~~~d  171 (473)
                      ..+.|+|||..|.+-+.|..+++|++...       .++     ..+. .....|...+|-       |+..++++.+.+
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            35789999999999999999999997421       110     0111 113446666663       677889999999


Q ss_pred             CeEEEeeCCCCcccccc-CCCcCCcEE---EEEeceeccCCCCceEEEeeCCCcEEEEEC-CCCeEE--EE-----ecCc
Q 011978          172 GELQCWDPQTGKPSGNP-LSGHKKWIT---GISWEPVHLNAPCRRFVSASKDGDARIWDV-SLRKCV--IC-----LSGH  239 (473)
Q Consensus       172 g~i~iwd~~~~~~~~~~-~~~~~~~v~---~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~-~~~~~~--~~-----~~~h  239 (473)
                      .-|++||.-+|+..... .-.|...++   ++.|+     +++.++. ++..+.|+++|+ +.+..-  ..     -.+.
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-----~DGeqlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-----PDGEQLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEec-----CCCCeEe-ecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence            99999999998753211 112333333   34444     4666654 567799999998 444211  11     1245


Q ss_pred             cccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHH
Q 011978          240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (473)
Q Consensus       240 ~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (473)
                      .+.+.|++|+|-.  .++.|+...++-||.-..+..+..+-+|+.-|..+.+.++.                        
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG------------------------  262 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG------------------------  262 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc------------------------
Confidence            6788999999853  68889998999998888888888889999999999887752                        


Q ss_pred             HhhhhcccCCCCceEEEec-CCceEEEEeCCCCCCCeeeecCccc-ceeE--EEECCCCcEEEEEECCCcEEEEeCCC-C
Q 011978          318 LERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQ-LVNH--VYFSPDGQWVASASFDKSIKLWNGTT-G  392 (473)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~--v~~sp~g~~lasgs~d~~v~lwd~~~-~  392 (473)
                                  +++++|+ .|-.|..||++....+.-.+..|.. .-..  ....|++++||+|+.||.|++||++. |
T Consensus       263 ------------n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  263 ------------NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             ------------CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence                        2455544 4778999999988877766666654 2222  45568999999999999999999998 7


Q ss_pred             ceEEEeeCCccCEEEEEEecCCCEEEEEeCC
Q 011978          393 KFVAVFRGHVGPVYQISWSADSRLLLSGSKD  423 (473)
Q Consensus       393 ~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D  423 (473)
                      ..+..+..|...++.|+++|--.++|++|..
T Consensus       331 n~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  331 NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CcccccccccccccceecCcccceeeeccCc
Confidence            7788888899999999999998888887653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=8.1e-18  Score=147.64  Aligned_cols=201  Identities=22%  Similarity=0.360  Sum_probs=141.3

Q ss_pred             EEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCC
Q 011978          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG  191 (473)
Q Consensus       112 ~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  191 (473)
                      .+++|+.+|..|++++.||++|||++..-..+.....|...|.+|.|+|||+.|++-+.| ..++|+.++|.........
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            679999999999999999999999988777666777899999999999999999999999 9999999988432211100


Q ss_pred             cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-----eEEEe-ecCCeEEE
Q 011978          192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-----VIYTG-SQDCTIKV  265 (473)
Q Consensus       192 ~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-----~l~s~-~~d~~i~~  265 (473)
                      ...                ..                              ...+.|..++     ++++. ..-+.|+.
T Consensus       227 ~k~----------------~~------------------------------~~~cRF~~d~~~~~l~laa~~~~~~~v~~  260 (398)
T KOG0771|consen  227 SKD----------------EM------------------------------FSSCRFSVDNAQETLRLAASQFPGGGVRL  260 (398)
T ss_pred             ccc----------------hh------------------------------hhhceecccCCCceEEEEEecCCCCceeE
Confidence            000                00                              0111222111     11111 12233333


Q ss_pred             EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (473)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  345 (473)
                      ||+.                                                                         +|+
T Consensus       261 ~~~~-------------------------------------------------------------------------~w~  267 (398)
T KOG0771|consen  261 CDIS-------------------------------------------------------------------------LWS  267 (398)
T ss_pred             EEee-------------------------------------------------------------------------eec
Confidence            3321                                                                         111


Q ss_pred             CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe-eCCccCEEEEEEecCCCEEEEEeCCC
Q 011978          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQISWSADSRLLLSGSKDS  424 (473)
Q Consensus       346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~g~~l~s~s~Dg  424 (473)
                      -. ......+.......|++++++++|+++|.|+.||.|-+++..+.+.++.. +.|...|+.|.|+||.+++++.|.|.
T Consensus       268 ~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  268 GS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             cc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence            10 00000111112246899999999999999999999999999988877655 57999999999999999999999999


Q ss_pred             cEEEEECCC
Q 011978          425 TLKVWDIRT  433 (473)
Q Consensus       425 ~i~iwd~~~  433 (473)
                      +..+..+..
T Consensus       347 ~~~v~~l~v  355 (398)
T KOG0771|consen  347 EAAVTKLAV  355 (398)
T ss_pred             ceeEEEEee
Confidence            998887654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.6e-18  Score=152.10  Aligned_cols=293  Identities=21%  Similarity=0.310  Sum_probs=211.0

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEECCC--CCeEEEEecCCeEEEe
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSAD--GKHLVSGSKAGELQCW  177 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~d--g~~l~s~~~dg~i~iw  177 (473)
                      ...|.+|.+.|+.+.|...|..|++||.|..|.+||+..+.+...+ .+|...|..-.|-|.  .+.|++++.||.+++=
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            3457889999999999999999999999999999999988877665 488888887778773  5679999999999887


Q ss_pred             eCCC-Cccc-cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE---EecCccc---cEEEEEec
Q 011978          178 DPQT-GKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI---CLSGHTL---AVTCVKWG  249 (473)
Q Consensus       178 d~~~-~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~---~~~~h~~---~v~~~~~~  249 (473)
                      .+.. +... ...+..|.+.|..++..|...    ..|.+++.|+.+.-.|++.+....   +-..+..   ....++.+
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp----~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP----KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCC----CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            6543 3222 234677889999988877543    479999999999999998764322   2222322   45567777


Q ss_pred             CCC--eEEEeecCCeEEEEECCCCcee------eeeec------cCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978          250 GDG--VIYTGSQDCTIKVWETTQGKLI------RELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (473)
Q Consensus       250 ~~~--~l~s~~~d~~i~~wd~~~~~~~------~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (473)
                      |..  .+++|+.|-.+++||.+.-..-      ..+..      ....|.+++++-                        
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh------------------------  346 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH------------------------  346 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC------------------------
Confidence            644  6889999999999997643211      11110      011122222221                        


Q ss_pred             HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC-----------Ceee-ecCccc--ceeEEE-ECCCCcEEEEEEC
Q 011978          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----------PKTR-MTGHQQ--LVNHVY-FSPDGQWVASASF  380 (473)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~-~~~~~~--~v~~v~-~sp~g~~lasgs~  380 (473)
                                  .+..++++-.|-.|+++....+..           .... ..||..  .|..+- |-|...|+++||.
T Consensus       347 ------------~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD  414 (559)
T KOG1334|consen  347 ------------DGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD  414 (559)
T ss_pred             ------------CccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc
Confidence                        122344555566677775322111           1112 456653  355554 5689999999999


Q ss_pred             CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      .|.|.||+-.+++.+..+++....|+|+.=+|.-..||+.+.|..||||-..+
T Consensus       415 CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  415 CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            99999999999999998888777999999999999999999999999997643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1e-17  Score=142.98  Aligned_cols=271  Identities=17%  Similarity=0.267  Sum_probs=184.2

Q ss_pred             eeEEEeecc--cccccccCCcccEEEEEECC--CCCeEEEEeCCCeEEEEeCCCCcee--EEEcCCC-CCEEEEEECCCC
Q 011978           90 AVFRIRPVN--RCSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHK-NWVLCIAWSADG  162 (473)
Q Consensus        90 ~~~~~~~~~--~~~~~~~gh~~~V~~~~~sp--~~~~lat~s~d~~i~iwd~~~~~~~--~~~~~~~-~~v~~l~~s~dg  162 (473)
                      ..+++....  +....+.+|...++.++|..  .+..+.+|+.||+||+||++.....  .....+. .+..|++-+-.+
T Consensus        50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~  129 (376)
T KOG1188|consen   50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK  129 (376)
T ss_pred             CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence            344554443  36677899999999999987  4667899999999999999876543  3445555 577888887777


Q ss_pred             CeEEEEe----cCCeEEEeeCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe---EEE
Q 011978          163 KHLVSGS----KAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVI  234 (473)
Q Consensus       163 ~~l~s~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~---~~~  234 (473)
                      +.+++|.    .+-.+.+||++..+. +......|...|+.+.|+|..+    +.+++||.||-+.++|+....   .+.
T Consensus       130 ~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p----nlLlSGSvDGLvnlfD~~~d~EeDaL~  205 (376)
T KOG1188|consen  130 NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP----NLLLSGSVDGLVNLFDTKKDNEEDALL  205 (376)
T ss_pred             CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC----CeEEeecccceEEeeecCCCcchhhHH
Confidence            7777775    356799999988766 6667789999999999999654    589999999999999987542   122


Q ss_pred             EecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978          235 CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (473)
Q Consensus       235 ~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (473)
                      ....|...|.++.|.+++  .|.+-+...+..+|+++.+.....+....  +..                       ...
T Consensus       206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~--~~~-----------------------~d~  260 (376)
T KOG1188|consen  206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPD--VSA-----------------------DDL  260 (376)
T ss_pred             HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCcc--chh-----------------------hhH
Confidence            223466779999999988  79999999999999998876443332110  000                       000


Q ss_pred             HHHHH-HhhhhcccCCCCceEE-EecCCceEEEEeCC-----CCCCCeeeecC-cccceeEEEECCCCcEEEEEECCCcE
Q 011978          313 MKKAA-LERYNKIKGNAPERLV-SGSDDFTMFLWEPA-----VSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSI  384 (473)
Q Consensus       313 ~~~~~-~~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~-----~~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d~~v  384 (473)
                      .+... ....+.......+.++ .++.-+...++-..     ........+.+ |...|+++.|...+.++.||+.||.+
T Consensus       261 r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l  340 (376)
T KOG1188|consen  261 RKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLL  340 (376)
T ss_pred             HhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceE
Confidence            00000 0111111111122233 33324444443321     11223344444 78889999999999999999999999


Q ss_pred             EEEeC
Q 011978          385 KLWNG  389 (473)
Q Consensus       385 ~lwd~  389 (473)
                      .+|..
T Consensus       341 ~~Wk~  345 (376)
T KOG1188|consen  341 QAWKV  345 (376)
T ss_pred             EEEec
Confidence            99974

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.77  E-value=1.8e-16  Score=132.38  Aligned_cols=277  Identities=18%  Similarity=0.259  Sum_probs=194.2

Q ss_pred             CCEEEEEECC--C-CCeEEEEec----CCeEEEeeC--CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978          151 NWVLCIAWSA--D-GKHLVSGSK----AGELQCWDP--QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (473)
Q Consensus       151 ~~v~~l~~s~--d-g~~l~s~~~----dg~i~iwd~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~  221 (473)
                      -.+.++.|+.  + +.+|+.|+.    .++|.|-.+  .+++........|.-+++.+-|.|.........++|++  ..
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~  122 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF  122 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence            3467778872  2 346777774    466766554  34444444446788899999999976544445565544  57


Q ss_pred             EEEEECCCCeEE----EE-----ecCccccEEEEEecCC--CeEEEeecCCeEEEEECCCCce---eeeeeccCceEEEE
Q 011978          222 ARIWDVSLRKCV----IC-----LSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKL---IRELKGHGHWVNSL  287 (473)
Q Consensus       222 i~iwd~~~~~~~----~~-----~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~  287 (473)
                      +|+|.+......    ..     -..+..++++..|+.-  .++.+++-|-+..+||++++..   -.++-.|...|..+
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI  202 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI  202 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence            999988732111    11     1245678888888742  4788999999999999998733   45678899999998


Q ss_pred             EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc--ccceeE
Q 011978          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH--QQLVNH  365 (473)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~  365 (473)
                      ++...                                   ..+.+++.+.||.++++|++............  ......
T Consensus       203 af~~~-----------------------------------s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR  247 (364)
T KOG0290|consen  203 AFLKG-----------------------------------SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR  247 (364)
T ss_pred             EeccC-----------------------------------ccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee
Confidence            87642                                   23468999999999999987554332222211  345667


Q ss_pred             EEECC-CCcEEEEEECC-CcEEEEeCCCC-ceEEEeeCCccCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCce-----
Q 011978          366 VYFSP-DGQWVASASFD-KSIKLWNGTTG-KFVAVFRGHVGPVYQISWSAD-SRLLLSGSKDSTLKVWDIRTQKL-----  436 (473)
Q Consensus       366 v~~sp-~g~~lasgs~d-~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~Dg~i~iwd~~~~~~-----  436 (473)
                      ++|++ |-+++|+-..| ..|.+-|++.. ..+..+++|.+.|++++|.|. ..+|+++++|..+.|||+..--.     
T Consensus       248 LswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d  327 (364)
T KOG0290|consen  248 LSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED  327 (364)
T ss_pred             eccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence            88887 56788876655 46899999875 467889999999999999996 46899999999999999975211     


Q ss_pred             -eecccccCCCEEEEEEee-CCCEEEEEeCC
Q 011978          437 -KQDLPGHADEVFAVDWSP-DGEKVASGGKD  465 (473)
Q Consensus       437 -~~~~~~h~~~i~~l~~s~-d~~~l~s~~~D  465 (473)
                       +-.+. -..+|+.+.|++ .+.+++.+...
T Consensus       328 Pilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  328 PILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             chhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence             11122 346899999994 45677776553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.4e-16  Score=150.45  Aligned_cols=273  Identities=19%  Similarity=0.242  Sum_probs=176.1

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCC---eEEEEecCCeEEEeeCCCCccccccCC
Q 011978          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK---HLVSGSKAGELQCWDPQTGKPSGNPLS  190 (473)
Q Consensus       114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~---~l~s~~~dg~i~iwd~~~~~~~~~~~~  190 (473)
                      -.||+|+++++... +.+|.||...|+.++..+.+|..++.++.+.|...   ++++++.+|.|++||...+........
T Consensus        22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             cccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            46899999887764 46999999999999999999999999999988543   677999999999999988875543211


Q ss_pred             CcCCcEEEEEeceeccCCCCceEEEeeC-CC-cEEEEECCCCeEE-----EEe--------cCccccEEEEEecCCCeEE
Q 011978          191 GHKKWITGISWEPVHLNAPCRRFVSASK-DG-DARIWDVSLRKCV-----ICL--------SGHTLAVTCVKWGGDGVIY  255 (473)
Q Consensus       191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg-~i~iwd~~~~~~~-----~~~--------~~h~~~v~~~~~~~~~~l~  255 (473)
                        ...+..+.+.|.....+  .++..+. |. .+........+..     .+.        .+|.. -.++.+++.+.+.
T Consensus       101 --~~~v~~~~~~~~~a~~s--~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~  175 (792)
T KOG1963|consen  101 --NLPVHALVYKPAQADIS--ANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFK  175 (792)
T ss_pred             --CCceeEEEechhHhCcc--ceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEE
Confidence              12233333333222111  1111111 00 0000000000000     000        00000 1112222222222


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      ....                                                                            
T Consensus       176 ~i~~----------------------------------------------------------------------------  179 (792)
T KOG1963|consen  176 GIVH----------------------------------------------------------------------------  179 (792)
T ss_pred             EEEE----------------------------------------------------------------------------
Confidence            2222                                                                            


Q ss_pred             cCCceEEEEeCCCCC---CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC--C--ceEEEeeCCccCEEEE
Q 011978          336 SDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT--G--KFVAVFRGHVGPVYQI  408 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~--~--~~~~~~~~h~~~v~~v  408 (473)
                        +..+++|......   ........|...+++.++||+++++|+|..||.|.+|.--.  +  .....+.=|...|+++
T Consensus       180 --~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L  257 (792)
T KOG1963|consen  180 --MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL  257 (792)
T ss_pred             --eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence              2233444332211   01111234555689999999999999999999999996432  2  1234566688999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       409 ~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      +|++||.+|.+|+.++.+.+|.+.+++ .+-++--.+.|..+.+|||+...+....|+.|.+-
T Consensus       258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li  319 (792)
T KOG1963|consen  258 SFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI  319 (792)
T ss_pred             EEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence            999999999999999999999999987 55666677899999999999999999999998764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=5.1e-16  Score=148.28  Aligned_cols=291  Identities=22%  Similarity=0.278  Sum_probs=199.9

Q ss_pred             CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC--Cc--eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--QT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~--~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      -|+-.++|.++||+++++|+|..||.|.+|.--.  ..  ....+.-|.+.|.+++|++||.+|++|+..|.+.+|...+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4777799999999999999999999999995322  11  1223446888999999999999999999999999999999


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC-----------ccccEEEEEecC
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-----------HTLAVTCVKWGG  250 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~~~~~~  250 (473)
                      ++  .+.++.-...|..+.++|     ++........|..|.+-...+.....++.|           ...-.+.++++|
T Consensus       283 ~~--kqfLPRLgs~I~~i~vS~-----ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp  355 (792)
T KOG1963|consen  283 GK--KQFLPRLGSPILHIVVSP-----DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP  355 (792)
T ss_pred             CC--cccccccCCeeEEEEEcC-----CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence            87  356777778899998886     556778888899998887654332222211           122345566676


Q ss_pred             -CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          251 -DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       251 -~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                       -+.++-.+.-|.|.+||+-+.+.+..+..-.     ....                                       
T Consensus       356 r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~-----~n~~---------------------------------------  391 (792)
T KOG1963|consen  356 RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCD-----ENYS---------------------------------------  391 (792)
T ss_pred             CCCceeecCCCceEEEEeccccceeeeEEEEe-----eccc---------------------------------------
Confidence             4567777888899999887766554432100     0000                                       


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE--------CCC--cEEEEeCCCCce----E
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--------FDK--SIKLWNGTTGKF----V  395 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs--------~d~--~v~lwd~~~~~~----~  395 (473)
                            ..|+                  .+...+++++.+-.|.+++|+-        .||  .+++|-......    .
T Consensus       392 ------~~~~------------------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~  447 (792)
T KOG1963|consen  392 ------DGDV------------------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILN  447 (792)
T ss_pred             ------CCcc------------------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEE
Confidence                  0000                  1123466677777788888863        233  578896553322    1


Q ss_pred             -EEeeCCccCEEEEEEec-CCC-EEEEEeCCCcEEEEECCCCc----------eeecccccCCCEEEEEEeeCCCEEEEE
Q 011978          396 -AVFRGHVGPVYQISWSA-DSR-LLLSGSKDSTLKVWDIRTQK----------LKQDLPGHADEVFAVDWSPDGEKVASG  462 (473)
Q Consensus       396 -~~~~~h~~~v~~v~~sp-~g~-~l~s~s~Dg~i~iwd~~~~~----------~~~~~~~h~~~i~~l~~s~d~~~l~s~  462 (473)
                       .+...|...+...++.+ ... .++++|.||.++||-+...+          +...-.-|..++++++|+.||. ++++
T Consensus       448 T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~  526 (792)
T KOG1963|consen  448 TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAV  526 (792)
T ss_pred             EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEE
Confidence             23356877766666654 333 89999999999999873321          1111112678899999999994 6777


Q ss_pred             eCCCcEEecc
Q 011978          463 GKDRVLKLWM  472 (473)
Q Consensus       463 ~~D~~i~~w~  472 (473)
                      +.|++|.+|+
T Consensus       527 s~~~~Itiwd  536 (792)
T KOG1963|consen  527 SFDDTITIWD  536 (792)
T ss_pred             ecCCEEEEec
Confidence            8888999996

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=3e-17  Score=142.55  Aligned_cols=164  Identities=29%  Similarity=0.499  Sum_probs=136.0

Q ss_pred             ecCccccEEEEEecC--CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHH
Q 011978          236 LSGHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (473)
Q Consensus       236 ~~~h~~~v~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (473)
                      ..||.++|..+.|+|  |..|++|+.|.+|.+|++..+.+.+.                                     
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-------------------------------------  119 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-------------------------------------  119 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-------------------------------------
Confidence            468999999999987  45799999999999999876543221                                     


Q ss_pred             HHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCC
Q 011978          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTG  392 (473)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~  392 (473)
                                                         ...+...+.+|+..|.-++|+|. .+.|++++.|.+|.+||+.+|
T Consensus       120 -----------------------------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg  164 (472)
T KOG0303|consen  120 -----------------------------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG  164 (472)
T ss_pred             -----------------------------------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC
Confidence                                               11345667889999999999995 578999999999999999999


Q ss_pred             ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCC-CEEEEEEeeCCCEEEEE---eCCCcE
Q 011978          393 KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD-EVFAVDWSPDGEKVASG---GKDRVL  468 (473)
Q Consensus       393 ~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~-~i~~l~~s~d~~~l~s~---~~D~~i  468 (473)
                      +.+..+. |...|.++.|+.||.+|++.+.|..|+|||.++++...+-.+|.+ +-..+.|-.+|+.+-+|   ..+.++
T Consensus       165 eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~  243 (472)
T KOG0303|consen  165 EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI  243 (472)
T ss_pred             ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence            9888887 999999999999999999999999999999999999887777875 44567788888844433   246788


Q ss_pred             Eecc
Q 011978          469 KLWM  472 (473)
Q Consensus       469 ~~w~  472 (473)
                      -||.
T Consensus       244 aLwd  247 (472)
T KOG0303|consen  244 ALWD  247 (472)
T ss_pred             eccC
Confidence            8885

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=4.6e-17  Score=141.43  Aligned_cols=200  Identities=23%  Similarity=0.430  Sum_probs=157.5

Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-------eEEEEecCccccEEEEEecCC--CeEEEee
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-------KCVICLSGHTLAVTCVKWGGD--GVIYTGS  258 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~--~~l~s~~  258 (473)
                      ...||++.|..+.|.|.+    ...+++||.|.+|+||++..+       +.+..+.||...|--++|++-  +.|++++
T Consensus        76 ~v~GHt~~vLDi~w~Pfn----D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFN----DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CccCccccccccccCccC----CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            467999999999999964    347999999999999998754       346778899999999999874  4789999


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|.+|.+|++.+|..+-++                                                             
T Consensus       152 ~Dn~v~iWnv~tgeali~l-------------------------------------------------------------  170 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITL-------------------------------------------------------------  170 (472)
T ss_pred             CCceEEEEeccCCceeeec-------------------------------------------------------------
Confidence            9999999999887643221                                                             


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccC-EEEEEEecCCCEE
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP-VYQISWSADSRLL  417 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~-v~~v~~sp~g~~l  417 (473)
                                         .|.+.|.++.|+-||.+|++.+.|+.|||||.++++.+..-.+|.+. -..+.|-.+|..+
T Consensus       171 -------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  171 -------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             -------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence                               26677899999999999999999999999999999999888888763 4557788888855


Q ss_pred             EEEe---CCCcEEEEECCCCc---eeecccccCCCEEEEEEeeCCCEEE-EEeCCCcEEecc
Q 011978          418 LSGS---KDSTLKVWDIRTQK---LKQDLPGHADEVFAVDWSPDGEKVA-SGGKDRVLKLWM  472 (473)
Q Consensus       418 ~s~s---~Dg~i~iwd~~~~~---~~~~~~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~~w~  472 (473)
                      -+|-   .+..+-+||....+   ..+++... ..|.---|.+|.+.+. +|-.|+.||.|.
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyE  292 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFE  292 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEE
Confidence            4442   47789999876532   34566543 3455556788888775 555899999763

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.76  E-value=5.8e-16  Score=129.43  Aligned_cols=271  Identities=20%  Similarity=0.276  Sum_probs=185.3

Q ss_pred             cEEEEEEC--CC-CCeEEEEe----CCCeEEEEeCC--CCceeEE-EcCCCCCEEEEEECCCCC-----eEEEEecCCeE
Q 011978          110 AVLSVAFS--PD-GRQLASGS----GDTTVRLWDLN--TQTPMFK-CTGHKNWVLCIAWSADGK-----HLVSGSKAGEL  174 (473)
Q Consensus       110 ~V~~~~~s--p~-~~~lat~s----~d~~i~iwd~~--~~~~~~~-~~~~~~~v~~l~~s~dg~-----~l~s~~~dg~i  174 (473)
                      ++.++.|+  |+ +.+||.|+    ..+.|.|-.+.  +++.+.. ...|..+++.+.|.|+..     +||+.+  ..+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L  123 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL  123 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence            45667776  33 45688887    34566666543  2222211 136889999999999863     455543  589


Q ss_pred             EEeeCCC--Cccc------cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE---EEEecCccccE
Q 011978          175 QCWDPQT--GKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAV  243 (473)
Q Consensus       175 ~iwd~~~--~~~~------~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~v  243 (473)
                      ++|.+..  ++..      ......+.+++++..|+...    .+++.++|-|-+..|||++++..   -.++-.|...|
T Consensus       124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d----p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV  199 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD----PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV  199 (364)
T ss_pred             EEEeccCcCCceehhhhhccCcccccCCcccccccccCC----cceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence            9998863  2211      11124456788888888653    46899999999999999998632   45677899999


Q ss_pred             EEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeecc---CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          244 TCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       244 ~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      ..++|..++  .+++.+.||.+|+||++.-.....+...   ..+...+++++.                          
T Consensus       200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq--------------------------  253 (364)
T KOG0290|consen  200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ--------------------------  253 (364)
T ss_pred             eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC--------------------------
Confidence            999998755  6889999999999999864322111110   112222222211                          


Q ss_pred             hhhhcccCCCCceEEE-ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCc---
Q 011978          319 ERYNKIKGNAPERLVS-GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK---  393 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~---  393 (473)
                               .+..+++ +-+...+.+-|++....+..++.+|...|+.++|.|. ...|++++.|..+-+||+.+.-   
T Consensus       254 ---------DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~  324 (364)
T KOG0290|consen  254 ---------DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN  324 (364)
T ss_pred             ---------CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence                     1122332 2345568889999888999999999999999999995 6789999999999999987532   


Q ss_pred             ---eEEEeeCCccCEEEEEEec-CCCEEEEEeC
Q 011978          394 ---FVAVFRGHVGPVYQISWSA-DSRLLLSGSK  422 (473)
Q Consensus       394 ---~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~  422 (473)
                         ++..+. -.+.|+.+.|++ .+..++.+..
T Consensus       325 ~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  325 GEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             CCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence               222333 456899999996 4567777653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.76  E-value=1.2e-16  Score=135.31  Aligned_cols=235  Identities=23%  Similarity=0.360  Sum_probs=174.5

Q ss_pred             CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc--cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (473)
Q Consensus       150 ~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~  227 (473)
                      ..+|+|.+|++|+..++.+.....|.||......  .....+..|...|+++.|.|.     .+++++|+.|+.-.+|..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~-----snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK-----SNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC-----CCceeEccCCCCcccccc
Confidence            4679999999999999999999999999876655  234567889999999999984     358999999999999998


Q ss_pred             CC-C--eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCC
Q 011978          228 SL-R--KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT  303 (473)
Q Consensus       228 ~~-~--~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  303 (473)
                      .. +  +....+..++.+.+|+.|+|.+ .+++|+.-+.|.+|-++...--                             
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-----------------------------  135 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-----------------------------  135 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-----------------------------
Confidence            43 3  3455667789999999999876 6888998888888865432100                             


Q ss_pred             CcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc
Q 011978          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS  383 (473)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~  383 (473)
                                                              |-   .+   ..-..+...|.+++|+|++-+||+||.|+.
T Consensus       136 ----------------------------------------WV---sK---hikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen  136 ----------------------------------------WV---SK---HIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             ----------------------------------------eh---hh---hhCCccccceeeeeccCCcceecccccCcc
Confidence                                                    00   00   000122356899999999999999999999


Q ss_pred             EEEEeCC-----C-------------CceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeecccccC
Q 011978          384 IKLWNGT-----T-------------GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK-LKQDLPGHA  444 (473)
Q Consensus       384 v~lwd~~-----~-------------~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~h~  444 (473)
                      +|+|..-     +             |+++..+....+.|..+.|+|+|..|+-.+.|+++.+-|..... ..+.+..-.
T Consensus       170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~  249 (361)
T KOG1523|consen  170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ  249 (361)
T ss_pred             eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc
Confidence            9999631     1             23344454566889999999999999999999999999987653 233333223


Q ss_pred             CCEEEEEEeeCCCEEEEEeCC
Q 011978          445 DEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       445 ~~i~~l~~s~d~~~l~s~~~D  465 (473)
                      -+..++.|-.+ +.++.++.|
T Consensus       250 lP~ls~~~ise-~~vv~ag~~  269 (361)
T KOG1523|consen  250 LPLLSVSWISE-NSVVAAGYD  269 (361)
T ss_pred             CCceeeEeecC-CceeecCCC
Confidence            45667777654 345555555

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1e-16  Score=153.62  Aligned_cols=233  Identities=22%  Similarity=0.247  Sum_probs=160.7

Q ss_pred             CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCcccc-ccCCCcCCcEEEEEecee
Q 011978          129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSG-NPLSGHKKWITGISWEPV  204 (473)
Q Consensus       129 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~-~~~~~~~~~v~~i~~~~~  204 (473)
                      +..|.+||..... ...+..|...+.+..|||||++|+.++.+   ..|++||+.+++... ....+|   ...+.|+| 
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-  257 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-  257 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-
Confidence            4689999987654 34456778889999999999999987754   369999998875321 122333   23466766 


Q ss_pred             ccCCCCceEEEee-CCCcEEEE--ECCCCeEEEEecCccccEEEEEecCCCe-EE-EeecCCeEEEEECCCCceeeeeec
Q 011978          205 HLNAPCRRFVSAS-KDGDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       205 ~~~~~~~~~~s~s-~dg~i~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~~~~~~~~~~~  279 (473)
                          ++.+++.++ .+|...||  |+.++.. ..+..+...+.+..|++||. |+ ++..++...+|++......     
T Consensus       258 ----DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-----  327 (429)
T PRK01742        258 ----DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-----  327 (429)
T ss_pred             ----CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----
Confidence                566777654 67876665  6655543 44556666778899999984 44 4456777777764321000     


Q ss_pred             cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (473)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  359 (473)
                                                                                               ...+ .+
T Consensus       328 -------------------------------------------------------------------------~~~l-~~  333 (429)
T PRK01742        328 -------------------------------------------------------------------------ASLV-GG  333 (429)
T ss_pred             -------------------------------------------------------------------------eEEe-cC
Confidence                                                                                     0000 01


Q ss_pred             ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCcee
Q 011978          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR--TQKLK  437 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~--~~~~~  437 (473)
                      ..  ...+|+|||++|+..+.++ +.+||+.+++.......+  ...++.|+|||++|+.++.++.+.+|++.  .++..
T Consensus       334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~  408 (429)
T PRK01742        334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK  408 (429)
T ss_pred             CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence            11  2357899999999888765 556999888765433322  23568899999999999999998888763  57778


Q ss_pred             ecccccCCCEEEEEEeeC
Q 011978          438 QDLPGHADEVFAVDWSPD  455 (473)
Q Consensus       438 ~~~~~h~~~i~~l~~s~d  455 (473)
                      +.+.+|.+.+...+|||-
T Consensus       409 ~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        409 ARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEccCCCCCCCCcccCCC
Confidence            888888888899999984

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.75  E-value=1e-16  Score=144.59  Aligned_cols=247  Identities=19%  Similarity=0.333  Sum_probs=156.9

Q ss_pred             EEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc-----CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978          153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (473)
Q Consensus       153 v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~  227 (473)
                      +....++-.|++|+..- -..+++|+.+.+.....+     +.+-  .-.+-.|+...-.+.+.-++.|-.-|.+.+.|.
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp  202 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP  202 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEecc
Confidence            34444445566665432 246778877643222111     1111  111222322222233445667777888888876


Q ss_pred             CCCeEEEEec----CccccEEEEEecC--CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978          228 SLRKCVICLS----GHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (473)
Q Consensus       228 ~~~~~~~~~~----~h~~~v~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (473)
                      ...+....+.    -....|+|+.|-+  ++.++.+-.+|.+++||..--              +-+-.+.+.       
T Consensus       203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~--------------~~~t~p~~~-------  261 (636)
T KOG2394|consen  203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV--------------CGATAPSYQ-------  261 (636)
T ss_pred             hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc--------------ccCCCCccc-------
Confidence            5432211111    1235799999975  457888899999999986210              000000000       


Q ss_pred             CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC
Q 011978          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (473)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d  381 (473)
                                                    ...-.+...|..|.-.....+..+..--...|+..+|+|||++||+.|.|
T Consensus       262 ------------------------------~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD  311 (636)
T KOG2394|consen  262 ------------------------------ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD  311 (636)
T ss_pred             ------------------------------ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecC
Confidence                                          00000111122222222223333333334578999999999999999999


Q ss_pred             CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEe
Q 011978          382 KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS  453 (473)
Q Consensus       382 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s  453 (473)
                      |.+||||..+.+++..++.-.+...||+|||||+||++|+.|--|.||.+..++....-.||...|..|+|.
T Consensus       312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            999999999998888877777899999999999999999999999999999999999999999999999998

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=5.3e-16  Score=150.49  Aligned_cols=282  Identities=15%  Similarity=0.257  Sum_probs=191.1

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCC--cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC-
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-  228 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~-  228 (473)
                      .-..+.|+|-...++++...-.|.+||.+.++.....-.+  ....|+.+.+.   ...++..+++|+.||.||||+-- 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~li---Ne~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELI---NEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeee---cccchhheeeeccCceEEEecccc
Confidence            3456788888889999988889999999988764322111  12345555443   23466789999999999999642 


Q ss_pred             ----CCeEEEEecC---c----cccEEEEEecC-CCeEEEeecCCeEEEEECCCCceeeeeecc-CceEEEEEeccccee
Q 011978          229 ----LRKCVICLSG---H----TLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYAL  295 (473)
Q Consensus       229 ----~~~~~~~~~~---h----~~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  295 (473)
                          ..+.+....+   +    ...=.-+.|.. .|.|++++.-..|+|||....+.+..+... +..+.++....    
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~---- 1218 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL---- 1218 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc----
Confidence                2233322221   1    11112245654 467888877899999999876666554321 11222221110    


Q ss_pred             eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC--CeeeecCcccc--eeEEEECCC
Q 011978          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQL--VNHVYFSPD  371 (473)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~--v~~v~~sp~  371 (473)
                                                     ...+.++.|..||.+++||.+....  .......|...  |..+.+.++
T Consensus      1219 -------------------------------~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1219 -------------------------------VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred             -------------------------------cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence                                           1245789999999999999765433  33445567666  889999987


Q ss_pred             CcE-EEEEECCCcEEEEeCCCCceE--EEeeCCc--c-CEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee--ec----
Q 011978          372 GQW-VASASFDKSIKLWNGTTGKFV--AVFRGHV--G-PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK--QD----  439 (473)
Q Consensus       372 g~~-lasgs~d~~v~lwd~~~~~~~--~~~~~h~--~-~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~--~~----  439 (473)
                      |-- |++|+.||.|++||++.....  .....|.  | ..+++..+++...+|+|+. +.|+||++...+..  +.    
T Consensus      1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF 1346 (1387)
T ss_pred             CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc
Confidence            655 999999999999999874222  1222333  4 4899999999999999998 99999998753321  11    


Q ss_pred             ccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       440 ~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +......+.++.|+|-.-.||.|..|.+|.||.
T Consensus      1347 ~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             ccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence            111234678999999998999999999999874

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=1.5e-15  Score=131.17  Aligned_cols=224  Identities=16%  Similarity=0.225  Sum_probs=153.1

Q ss_pred             CCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEE
Q 011978          208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNS  286 (473)
Q Consensus       208 ~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~  286 (473)
                      .+...+..|+.||. +++.................|-..-|+..=. ++....-+.+++.+.+.+..+..+... ..|.+
T Consensus        15 qd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp-t~IL~   92 (391)
T KOG2110|consen   15 QDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP-TSILA   92 (391)
T ss_pred             cceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecC-CceEE
Confidence            34445555666653 6666543322111111222344444554422 223333356888888877666554332 23444


Q ss_pred             EEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC--ccccee
Q 011978          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG--HQQLVN  364 (473)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~  364 (473)
                      +.+.                                      ..+++.+-.+. |+++|+...+........  +...+.
T Consensus        93 VrmN--------------------------------------r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~  133 (391)
T KOG2110|consen   93 VRMN--------------------------------------RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLC  133 (391)
T ss_pred             EEEc--------------------------------------cceEEEEEccc-EEEEecccceeehhhhccCCCccceE
Confidence            4332                                      23455555444 999998776654444333  455566


Q ss_pred             EEEECCCCcEEEEEEC--CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc-EEEEECCCCceeeccc
Q 011978          365 HVYFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST-LKVWDIRTQKLKQDLP  441 (473)
Q Consensus       365 ~v~~sp~g~~lasgs~--d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~  441 (473)
                      ++++++.+.|+|.-+.  .|.|.+||..+.+.+..+..|.+++-+++|+++|.+||++|..|+ ||++.+.+++.+.+++
T Consensus       134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR  213 (391)
T KOG2110|consen  134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR  213 (391)
T ss_pred             eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence            6666677789997543  478999999999999999999999999999999999999999996 7999999998887775


Q ss_pred             ccC--CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          442 GHA--DEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       442 ~h~--~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      -..  ..|++++|+||+++|++.|..++|.+|.
T Consensus       214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK  246 (391)
T ss_pred             CCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence            332  4789999999999999999999999985

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.9e-17  Score=147.60  Aligned_cols=165  Identities=24%  Similarity=0.405  Sum_probs=129.2

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEECC--CCCeEEEEecCCeEEEe
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA--DGKHLVSGSKAGELQCW  177 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iw  177 (473)
                      .++|.||++-|+|++|+.+|.+|++||.|-.+.|||.-..+++..+ ++|.+-|.|+.|-|  +.+.+++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3568899999999999999999999999999999998876666554 69999999999998  46788999999999999


Q ss_pred             eCCCCc---------cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe-EE------E---EecC
Q 011978          178 DPQTGK---------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CV------I---CLSG  238 (473)
Q Consensus       178 d~~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~-~~------~---~~~~  238 (473)
                      |+...+         ........|...|..++-.|..    ...|-++++||+++-+|++... |.      .   .+.+
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~----PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG----PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCC----CceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            997522         1223356677888877766543    2579999999999999998621 11      1   1112


Q ss_pred             ccccEEEEEecCCC--eEEEeecCCeEEEEECC
Q 011978          239 HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETT  269 (473)
Q Consensus       239 h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~  269 (473)
                      ......|+..+|..  +|+.|+.|-..++||.+
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            23455688888754  78999999999999954

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=5e-16  Score=140.13  Aligned_cols=260  Identities=19%  Similarity=0.352  Sum_probs=180.8

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce-eEEEcCCCCCEE-EEEE---C----CCCCeEEEEecCCeEEEe
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-MFKCTGHKNWVL-CIAW---S----ADGKHLVSGSKAGELQCW  177 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~-~~~~~~~~~~v~-~l~~---s----~dg~~l~s~~~dg~i~iw  177 (473)
                      |+..|-|+.|+.+...+.+++++..+.-||+.+... +..+.  +..|. .+..   +    .....++.++.||.+.+.
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCC--cccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            666777889988887777766665666666643321 11110  01010 0000   0    123468889999999998


Q ss_pred             eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEE
Q 011978          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIY  255 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~  255 (473)
                      +- .++ .......|.+.+.+-.|+|     ++.-++++++||.|++|. ++|....++.....+|.|++|.|+.  .++
T Consensus        91 ~k-~~r-VE~sv~AH~~A~~~gRW~~-----dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~  162 (737)
T KOG1524|consen   91 NK-SAR-VERSISAHAAAISSGRWSP-----DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVF  162 (737)
T ss_pred             cc-cch-hhhhhhhhhhhhhhcccCC-----CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEE
Confidence            63 333 3345788999999989987     566799999999999997 3444333444556789999999876  455


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +.+  +.+.+=-+.....+-..+.|++.|.++.+++.                                    .+.+++|
T Consensus       163 c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~------------------------------------s~lI~sg  204 (737)
T KOG1524|consen  163 CQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ------------------------------------SNIIASG  204 (737)
T ss_pred             ecC--CeEEEeecccccceeEEeccCcEEEEeecCcc------------------------------------ccceeec
Confidence            544  45555555555556678899999999988764                                    4569999


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR  415 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~  415 (473)
                      +.|...++||..  ..+......|...|++++|.|+ +.++.+|.. ++|+=           +...+.|..++||+||.
T Consensus       205 GED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGT  269 (737)
T KOG1524|consen  205 GEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGT  269 (737)
T ss_pred             CCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeeee-eeeec-----------CCCccceEEEEEcCCCc
Confidence            999999999953  3444555678889999999999 777777653 44421           22457899999999999


Q ss_pred             EEEEEeCCCcEEEE
Q 011978          416 LLLSGSKDSTLKVW  429 (473)
Q Consensus       416 ~l~s~s~Dg~i~iw  429 (473)
                      .+++|...|.+.+=
T Consensus       270 Q~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  270 QATCGTSTGQLIVA  283 (737)
T ss_pred             eeeccccCceEEEe
Confidence            99999988876543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=2.4e-15  Score=148.17  Aligned_cols=341  Identities=16%  Similarity=0.179  Sum_probs=202.1

Q ss_pred             eecccccccccCCcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCEEEEEECCCCCeEE
Q 011978           95 RPVNRCSATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLV  166 (473)
Q Consensus        95 ~~~~~~~~~~~gh~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~dg~~l~  166 (473)
                      ++.+..++.+..|...|..++.+++. .+++|||.||+|++||...-       +......--...+.++...+.++.+|
T Consensus      1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred             CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence            34556778889999999999988765 99999999999999997531       11112222356789999999999999


Q ss_pred             EEecCCeEEEeeCCCC--ccc----cccCCCc-CCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--c
Q 011978          167 SGSKAGELQCWDPQTG--KPS----GNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--S  237 (473)
Q Consensus       167 s~~~dg~i~iwd~~~~--~~~----~~~~~~~-~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--~  237 (473)
                      .++.||.|++.+++.-  +..    ......+ .+.+..+.  ..........++.+...+.+..||++...-...+  .
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~--a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMH--AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEee--cccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            9999999999988652  110    0011111 12222221  1111111247888889999999999876544333  2


Q ss_pred             CccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeec-cCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978          238 GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (473)
Q Consensus       238 ~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (473)
                      ...+.|++++.++.+ .++.|...|.+-+||++-+..+.+... +..++..+...+-+...                   
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~------------------- 1253 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQE------------------- 1253 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCC-------------------
Confidence            334679999999876 588999999999999998888777643 33556666655432100                   


Q ss_pred             HHHhhhhcccCCCCceEEEec-CCceEEEEeCCCCCCCeeeec------------------CcccceeEEEECCCCcEEE
Q 011978          316 AALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMT------------------GHQQLVNHVYFSPDGQWVA  376 (473)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~------------------~~~~~v~~v~~sp~g~~la  376 (473)
                                   .-.+.+++ ..+.+-+|+...+........                  .+.-......+...+..+.
T Consensus      1254 -------------S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~l 1320 (1431)
T KOG1240|consen 1254 -------------SVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLL 1320 (1431)
T ss_pred             -------------ceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceee
Confidence                         01122222 344455555443321111000                  1111122234445567899


Q ss_pred             EEECCCcEEEEeCCCCceE-EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEE---ECCC-----Cceee--------c
Q 011978          377 SASFDKSIKLWNGTTGKFV-AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVW---DIRT-----QKLKQ--------D  439 (473)
Q Consensus       377 sgs~d~~v~lwd~~~~~~~-~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iw---d~~~-----~~~~~--------~  439 (473)
                      +|+.|..||.||....+.. ....+.+........+.+ .-++.++.  .+..+   ....     ++...        .
T Consensus      1321 tggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~--~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~p 1397 (1431)
T KOG1240|consen 1321 TGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQ--FIDEFIIYQQTVGLTEALRENQKLRPGPSDP 1397 (1431)
T ss_pred             ecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCc--cchhhhhhhhhcCchhhcccccccccCCCCC
Confidence            9999999999998766543 222222222222222211 11222221  11111   0000     00011        1


Q ss_pred             ccccCCCEEEEEEeeC-CCEEEEEeCCCcEEecc
Q 011978          440 LPGHADEVFAVDWSPD-GEKVASGGKDRVLKLWM  472 (473)
Q Consensus       440 ~~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~~w~  472 (473)
                      -..|.+.|+++++-.. ..+|++++.||.|+||+
T Consensus      1398 s~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1398 STYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence            1247888998876543 45889999999999995

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.72  E-value=4.5e-15  Score=126.31  Aligned_cols=306  Identities=19%  Similarity=0.257  Sum_probs=195.7

Q ss_pred             EEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE
Q 011978          156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC  235 (473)
Q Consensus       156 l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~  235 (473)
                      ..|||+|+++|+++.- .+.|-|..+-+... .+ ..-+.|..+.|...    .+..+-....++.|.+|++...+--..
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q-lf-~cldki~yieW~ad----s~~ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQ-LF-LCLDKIVYIEWKAD----SCHILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHH-HH-HHHHHhhheeeecc----ceeeeeeeeccceEEEEEeecceeEEE
Confidence            5799999999999876 77777766543211 11 11234555666532    334455667889999999987766666


Q ss_pred             ecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHH
Q 011978          236 LSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (473)
Q Consensus       236 ~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (473)
                      +......+.+++|+|||  +|.+...|-.|.+|.+.+.+.. .++.....+..++++++..+.........+.|.....-
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            66677889999999998  4778899999999998875543 33444445677788887665544333322222221111


Q ss_pred             HHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc
Q 011978          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (473)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~  393 (473)
                      +...+.+..........-+--+-++..+.+||........  .....-.+..++|+|.+++|+.|+.|+.+|+-+--+.+
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk  243 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK  243 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence            1111111111111111224445566778889854322111  11222457889999999999999999999885411100


Q ss_pred             e------------------------------------------------------------EEEee------CCccCEEE
Q 011978          394 F------------------------------------------------------------VAVFR------GHVGPVYQ  407 (473)
Q Consensus       394 ~------------------------------------------------------------~~~~~------~h~~~v~~  407 (473)
                      .                                                            +..++      .....+..
T Consensus       244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~  323 (447)
T KOG4497|consen  244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK  323 (447)
T ss_pred             ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence            0                                                            00111      11224677


Q ss_pred             EEEecCCCEEEEEeC--CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          408 ISWSADSRLLLSGSK--DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       408 v~~sp~g~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++||+|..++++-.+  -+.+.+||++..+....+. ...+|.+..|.|....|+.+.....+.+|.
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence            999999999998643  4679999999877655554 345799999999999999888888898885

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.70  E-value=5.2e-15  Score=125.54  Aligned_cols=155  Identities=18%  Similarity=0.283  Sum_probs=126.3

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC-CCc
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGK  183 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~-~~~  183 (473)
                      ..+|+|.+|++|+..+|.+-....|.||......   +...++.|...|+.++|+|..+.|++|+.|..-++|... .++
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            3589999999999999999999999999987654   567788999999999999999999999999999999984 333


Q ss_pred             cc-cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE----EEecCccccEEEEEecCCCe-EEEe
Q 011978          184 PS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV----ICLSGHTLAVTCVKWGGDGV-IYTG  257 (473)
Q Consensus       184 ~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~-l~s~  257 (473)
                      -. ...+..++...+++.|.|.     .+.|++||..+.|.+|-++..+--    ..-+.+...|+++.|.+++. +++|
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~-----enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPK-----ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             eccceeEEEeccceeeEeecCc-----CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            21 1234567788899999984     368999999999999987643221    12245677899999999985 6788


Q ss_pred             ecCCeEEEEE
Q 011978          258 SQDCTIKVWE  267 (473)
Q Consensus       258 ~~d~~i~~wd  267 (473)
                      +.|+..|+|.
T Consensus       165 s~D~k~rVfS  174 (361)
T KOG1523|consen  165 STDGKCRVFS  174 (361)
T ss_pred             ccCcceeEEE
Confidence            9999999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.2e-14  Score=118.67  Aligned_cols=227  Identities=19%  Similarity=0.286  Sum_probs=153.2

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCC---------CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQT---------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i  222 (473)
                      .|.+-+|+|.+++|++|..+|.|.+..++.         |+....+..+|..+++.+.|..       ..+++|+ ||.|
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-------~~Lls~g-dG~V   83 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-------DFLLSGG-DGLV   83 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-------hheeecc-CceE
Confidence            355667899999999999999999998753         2333345589999999998863       2445554 5999


Q ss_pred             EEEECCCCeE------EEE--ecCcc-----ccEEEEEecC-CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEE
Q 011978          223 RIWDVSLRKC------VIC--LSGHT-----LAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA  288 (473)
Q Consensus       223 ~iwd~~~~~~------~~~--~~~h~-----~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~  288 (473)
                      +=|..+....      +..  .+-|.     -.|.++...| ++-++.++.|+.++-||+++|+..+.+++|...+-++.
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence            9987653221      000  11121     2456666664 34566777899999999999988888877766554442


Q ss_pred             ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEE
Q 011978          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF  368 (473)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~  368 (473)
                                                                                                     -
T Consensus       164 -------------------------------------------------------------------------------~  164 (325)
T KOG0649|consen  164 -------------------------------------------------------------------------------G  164 (325)
T ss_pred             -------------------------------------------------------------------------------e
Confidence                                                                                           2


Q ss_pred             CCCCcEEEEEECCCcEEEEeCCCCceEEEeeC---------Cc-cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978          369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---------HV-GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ  438 (473)
Q Consensus       369 sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~---------h~-~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~  438 (473)
                      -.....+.+|+.||++|+||.++++++.++..         |. .+|.+++-+.  .+|++|+ ...+.+|++++.+...
T Consensus       165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse~t~  241 (325)
T KOG0649|consen  165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSESTC  241 (325)
T ss_pred             cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEecC-CCceeEEeccCCCceE
Confidence            22233478899999999999999988776542         22 2466776644  4887765 4468999999877665


Q ss_pred             cccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          439 DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       439 ~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      .++- ...+..+.|-.  +.++++|..+.+.-|
T Consensus       242 vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  242 VFPI-PARVHLVDFVD--DCVLIGGEGNHVQSY  271 (325)
T ss_pred             EEec-ccceeEeeeec--ceEEEeccccceeee
Confidence            5442 34566777764  456777766555554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=8.4e-15  Score=128.89  Aligned_cols=191  Identities=22%  Similarity=0.263  Sum_probs=141.2

Q ss_pred             EEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978          244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (473)
Q Consensus       244 ~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (473)
                      .+++|+.+| .+++++.||++|+|+..+...+.....|...|.++.++++.                             
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-----------------------------  198 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-----------------------------  198 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-----------------------------
Confidence            578899885 68999999999999988887777778888899999998873                             


Q ss_pred             cccCCCCceEEEecCCceEEEEeCCCCCCCeeee-cCcccceeEEEECCCC-----cEEEEEECCCcEEEEeCCCCce--
Q 011978          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDG-----QWVASASFDKSIKLWNGTTGKF--  394 (473)
Q Consensus       323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~g-----~~lasgs~d~~v~lwd~~~~~~--  394 (473)
                             ..+++-+.| ..++|+...+....... ..-......+.|+.|+     ..++.-..-+.|+.||+.....  
T Consensus       199 -------k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~  270 (398)
T KOG0771|consen  199 -------KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN  270 (398)
T ss_pred             -------cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence                   357787888 89999987652221111 1222345567788776     3333334456677776543221  


Q ss_pred             -E--EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec-ccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          395 -V--AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       395 -~--~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                       +  ...-.....|++++.|+||+++|.|+.||.|-|++..+.+..+- -+.|...|+.+.|+||.+++++.+.|.++.|
T Consensus       271 ~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  271 FLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             ccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence             1  11111234799999999999999999999999999988666543 3568899999999999999999999988776


Q ss_pred             c
Q 011978          471 W  471 (473)
Q Consensus       471 w  471 (473)
                      .
T Consensus       351 ~  351 (398)
T KOG0771|consen  351 T  351 (398)
T ss_pred             E
Confidence            4

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.68  E-value=1e-13  Score=129.00  Aligned_cols=246  Identities=15%  Similarity=0.232  Sum_probs=151.3

Q ss_pred             ccEEEEEECCCCCeEEEEe-CCCeEEEEeCCC-Cce--eEEEcCCCCCEEEEEECCCCCeEEEEec-CCeEEEeeCCCCc
Q 011978          109 EAVLSVAFSPDGRQLASGS-GDTTVRLWDLNT-QTP--MFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGK  183 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s-~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~iwd~~~~~  183 (473)
                      +....++++|++++|++++ .++.|.+|++.. +..  .... ........++|+|+|++|++++. ++.|.+|++++..
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            4566789999999987765 578999999863 321  1111 12334678999999999988775 7899999986422


Q ss_pred             cccccC--CCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEE-------EecCccccEEEEEecCCCe
Q 011978          184 PSGNPL--SGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVI-------CLSGHTLAVTCVKWGGDGV  253 (473)
Q Consensus       184 ~~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~-------~~~~h~~~v~~~~~~~~~~  253 (473)
                      ......  ..+......+.+.|     +++++ ++...++.|.+||+.+...+.       .... ......+.|++++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~p-----~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~  187 (330)
T PRK11028        114 IPVAPIQIIEGLEGCHSANIDP-----DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQ  187 (330)
T ss_pred             CCCCceeeccCCCcccEeEeCC-----CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCC
Confidence            111111  11112234444544     44455 556667999999997633221       1111 22356789999874


Q ss_pred             -EEEee-cCCeEEEEECCC--CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          254 -IYTGS-QDCTIKVWETTQ--GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       254 -l~s~~-~d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                       ++++. .+++|.+|++..  ++. ..       +..+...+.                                     
T Consensus       188 ~lyv~~~~~~~v~v~~~~~~~~~~-~~-------~~~~~~~p~-------------------------------------  222 (330)
T PRK11028        188 YAYCVNELNSSVDVWQLKDPHGEI-EC-------VQTLDMMPA-------------------------------------  222 (330)
T ss_pred             EEEEEecCCCEEEEEEEeCCCCCE-EE-------EEEEecCCC-------------------------------------
Confidence             55555 489999999863  221 10       000000000                                     


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCCCCceEEEeeCCc---cCE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHV---GPV  405 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~~~~~~~~~~~h~---~~v  405 (473)
                                              . . .+......+.++|+|++++++.. ++.|.+|++........+.++.   ...
T Consensus       223 ------------------------~-~-~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p  276 (330)
T PRK11028        223 ------------------------D-F-SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP  276 (330)
T ss_pred             ------------------------c-C-CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC
Confidence                                    0 0 01112346889999999998854 6899999986432111222221   234


Q ss_pred             EEEEEecCCCEEEEEeC-CCcEEEEECC
Q 011978          406 YQISWSADSRLLLSGSK-DSTLKVWDIR  432 (473)
Q Consensus       406 ~~v~~sp~g~~l~s~s~-Dg~i~iwd~~  432 (473)
                      ..++|+|||++|+++.. +++|.+|++.
T Consensus       277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        277 RGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            57899999999998775 8999999875

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.68  E-value=1.4e-14  Score=138.24  Aligned_cols=246  Identities=18%  Similarity=0.269  Sum_probs=173.9

Q ss_pred             CcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCCce--eE----EEcCCCCCEEEEEECCCCC--eEEEEecCCeEEEe
Q 011978          107 HTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTP--MF----KCTGHKNWVLCIAWSADGK--HLVSGSKAGELQCW  177 (473)
Q Consensus       107 h~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~~~--~~----~~~~~~~~v~~l~~s~dg~--~l~s~~~dg~i~iw  177 (473)
                      -...|.|+.|+|.. .++|.|..+|+|.+||+..+..  ..    ....|..++..+.|..+-.  -+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            35679999999975 5677788999999999976543  21    1236889999999986544  49999999999999


Q ss_pred             eCCCCccc--cccC---C------CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEE---ECCCCe-----EEEEecC
Q 011978          178 DPQTGKPS--GNPL---S------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW---DVSLRK-----CVICLSG  238 (473)
Q Consensus       178 d~~~~~~~--~~~~---~------~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iw---d~~~~~-----~~~~~~~  238 (473)
                      +++.-...  ...+   .      .-...++.+.|.+...    ..|+.|+.+|.|.--   +.....     ....+..
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p----~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~  396 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP----NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT  396 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCC----ceEEEEcCCcEEEEEeccCCcccccccccccccccc
Confidence            87642210  0000   0      1123467788877543    579999999988762   222221     2234556


Q ss_pred             ccccEEEEEecCCC-eEEEeecCCeEEEEECC-CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHH
Q 011978          239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (473)
Q Consensus       239 h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (473)
                      |.+.|.++.++|=+ .++..+.|.++++|.-. ....+..+..+...+..++++|..                       
T Consensus       397 h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr-----------------------  453 (555)
T KOG1587|consen  397 HIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR-----------------------  453 (555)
T ss_pred             cCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC-----------------------
Confidence            78899999998744 33333339999999876 555666666666778888887752                       


Q ss_pred             HHhhhhcccCCCCceEEEecCCceEEEEeCCCCC-CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (473)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~  391 (473)
                                  +..++++..||.+.+||+.... .+.....-.....+.+.|+++|+.|++|...|++.+|++..
T Consensus       454 ------------pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  454 ------------PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ------------ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence                        4568899999999999986433 23333323345667788999999999999999999999853

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=1.2e-14  Score=126.64  Aligned_cols=271  Identities=16%  Similarity=0.230  Sum_probs=177.2

Q ss_pred             CCCEEEEEECCCCC--eEEEEecCCeEEEeeCCCCccccc-----cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978          150 KNWVLCIAWSADGK--HLVSGSKAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (473)
Q Consensus       150 ~~~v~~l~~s~dg~--~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i  222 (473)
                      ...|.+++|.-|++  .|...+.+-.+.............     ......+.|.++..       ....+++|-.+|.+
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-------~dg~Litc~~sG~l  127 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-------ADGTLITCVSSGNL  127 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh-------cCCEEEEEecCCcE
Confidence            34566777765443  333333555555555544332221     12222334444332       33588999999999


Q ss_pred             EEEECCCC-----eEEEEecCccccEEEEEecC--CCeEEEeecC--CeEEEEECCCCceeeeeeccCceEEEEEecccc
Q 011978          223 RIWDVSLR-----KCVICLSGHTLAVTCVKWGG--DGVIYTGSQD--CTIKVWETTQGKLIRELKGHGHWVNSLALSTEY  293 (473)
Q Consensus       223 ~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~--~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~  293 (473)
                      .+|....+     ..+..-.+  ..+..+.-.+  .+++++|+..  ..+++||+++.+.+.+-+.-...-..+      
T Consensus       128 ~~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L------  199 (412)
T KOG3881|consen  128 QVRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL------  199 (412)
T ss_pred             EEEeccCCccccccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc------
Confidence            99988733     22221111  1222222222  2356779988  899999999886655433211100000      


Q ss_pred             eeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc
Q 011978          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (473)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~  373 (473)
                        +.-.++-..                 ..+.+..+..+++++.-+.+++||+..++.|...+.-....++++...|+|+
T Consensus       200 --rVPvW~tdi-----------------~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn  260 (412)
T KOG3881|consen  200 --RVPVWITDI-----------------RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN  260 (412)
T ss_pred             --eeeeeeccc-----------------eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc
Confidence              000000000                 0011222457999999999999999998889888877788999999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEE
Q 011978          374 WVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW  452 (473)
Q Consensus       374 ~lasgs~d~~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~  452 (473)
                      +|++|..-+.+..||.+.++.... +++-.|.|.++..+|.+++||+++-|..|||+|+.+.+++....- ...++.+-+
T Consensus       261 ~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~  339 (412)
T KOG3881|consen  261 FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILL  339 (412)
T ss_pred             EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEe
Confidence            999999999999999999998876 889999999999999999999999999999999999766543321 234556665


Q ss_pred             eeC
Q 011978          453 SPD  455 (473)
Q Consensus       453 s~d  455 (473)
                      .++
T Consensus       340 ~~~  342 (412)
T KOG3881|consen  340 RDD  342 (412)
T ss_pred             cCC
Confidence            544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=7.4e-15  Score=140.88  Aligned_cols=219  Identities=25%  Similarity=0.302  Sum_probs=146.3

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCC---CeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeE
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGS-KAGEL  174 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d---~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i  174 (473)
                      ...+..|...+.+++|||||++|+.++.+   ..|++||+.++..  +..+.+|   ..+++|+|||+.|+.++ .+|.+
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~  272 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL  272 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence            45567788899999999999999987643   4799999988753  2223333   44689999999988764 67765


Q ss_pred             EEe--eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCCCeEEEEecCccccEEEEEecCC
Q 011978          175 QCW--DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD  251 (473)
Q Consensus       175 ~iw--d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  251 (473)
                      .||  |+.++...  .+..+...+....|+|     ++..++..+ .++...||++..........++..  .+..|+++
T Consensus       273 ~Iy~~d~~~~~~~--~lt~~~~~~~~~~wSp-----DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpD  343 (429)
T PRK01742        273 NIYVMGANGGTPS--QLTSGAGNNTEPSWSP-----DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISAD  343 (429)
T ss_pred             EEEEEECCCCCeE--eeccCCCCcCCEEECC-----CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCC
Confidence            554  66555432  3445555667777877     455565444 578888887643211111113332  45678888


Q ss_pred             Ce-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978          252 GV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (473)
Q Consensus       252 ~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (473)
                      |. ++..+.++ +.+||+.+++......                                                    
T Consensus       344 G~~ia~~~~~~-i~~~Dl~~g~~~~lt~----------------------------------------------------  370 (429)
T PRK01742        344 GKTLVMINGDN-VVKQDLTSGSTEVLSS----------------------------------------------------  370 (429)
T ss_pred             CCEEEEEcCCC-EEEEECCCCCeEEecC----------------------------------------------------
Confidence            74 55555544 5558876654311000                                                    


Q ss_pred             eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC--CCCceEEEeeCCccCEEEE
Q 011978          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG--TTGKFVAVFRGHVGPVYQI  408 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~--~~~~~~~~~~~h~~~v~~v  408 (473)
                                                 .+  ...+++|+|||++|+.++.++..++|++  .+|+....+..|.+.+..+
T Consensus       371 ---------------------------~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p  421 (429)
T PRK01742        371 ---------------------------TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP  421 (429)
T ss_pred             ---------------------------CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc
Confidence                                       00  0123579999999999999998888875  3577888888888889999


Q ss_pred             EEecC
Q 011978          409 SWSAD  413 (473)
Q Consensus       409 ~~sp~  413 (473)
                      +|||-
T Consensus       422 ~wsp~  426 (429)
T PRK01742        422 AWSPY  426 (429)
T ss_pred             ccCCC
Confidence            99984

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.67  E-value=1.3e-16  Score=150.90  Aligned_cols=234  Identities=25%  Similarity=0.436  Sum_probs=185.4

Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEE
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVW  266 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~w  266 (473)
                      .+.+|...|.+..|..     .+.++++|+.|..++||...+..|+....||...|+.++.+.++. +++++.|..|++|
T Consensus       185 rLlgH~naVyca~fDr-----tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDR-----TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHhhhhheeeeeecc-----ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            3578988899887654     578999999999999999999999999999999999999988774 7789999999999


Q ss_pred             ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  346 (473)
                      .+..+..+..+.+|++.|.+++++|-                                        .+.+.||++++||.
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~----------------------------------------~sss~dgt~~~wd~  299 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPR----------------------------------------ASSSDDGTCRIWDA  299 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCcc----------------------------------------ccCCCCCceEeccc
Confidence            99999999999999999999998873                                        36788999999996


Q ss_pred             CCCC---CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecC-CCEEEEEeC
Q 011978          347 AVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD-SRLLLSGSK  422 (473)
Q Consensus       347 ~~~~---~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~  422 (473)
                      +...   .+..........+-++.|..++.-++||+.|+.-+.|......      .+...+.-+.++.| ..+.+++-.
T Consensus       300 r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~  373 (1113)
T KOG0644|consen  300 RLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARN  373 (1113)
T ss_pred             cccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeee
Confidence            5211   0111111123567778888899999999999988888654221      12222222222222 246666777


Q ss_pred             CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEE-EEEeCCCcEEecc
Q 011978          423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLWM  472 (473)
Q Consensus       423 Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~~w~  472 (473)
                      +-.+.+|++.++.+...+.+|.+.++.+.++|-+..+ .+++.||.+.||.
T Consensus       374 ~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd  424 (1113)
T KOG0644|consen  374 DHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD  424 (1113)
T ss_pred             eeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence            8889999999999999999999999999999987665 5999999999996

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=1e-13  Score=120.00  Aligned_cols=234  Identities=17%  Similarity=0.265  Sum_probs=158.8

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC--CeEEEeeCCCCccc
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPS  185 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d--g~i~iwd~~~~~~~  185 (473)
                      ...++.+.|+.+...|..|+.|| .++|..+..............|.-+-|+.  .++|..+.+  ..+++.+.+.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence            34577777999999999998887 46777665444332222334466677874  466655544  34888887765543


Q ss_pred             cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec---CccccEEEEEecCCC-eEEE--eec
Q 011978          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDG-VIYT--GSQ  259 (473)
Q Consensus       186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~-~l~s--~~~  259 (473)
                      ....  ....|-++.++.       .+++.+=.+. |.|||+++-+.+.++.   .+...+..++++.++ +++-  ...
T Consensus        82 Ce~~--fpt~IL~VrmNr-------~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen   82 CEIF--FPTSILAVRMNR-------KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             EEEe--cCCceEEEEEcc-------ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence            3222  223455555433       4677776655 9999999988876653   334445555555443 2221  223


Q ss_pred             CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  339 (473)
                      -|.|.+||+.+-+                                                                   
T Consensus       152 ~GdV~l~d~~nl~-------------------------------------------------------------------  164 (391)
T KOG2110|consen  152 SGDVVLFDTINLQ-------------------------------------------------------------------  164 (391)
T ss_pred             CceEEEEEcccce-------------------------------------------------------------------
Confidence            3555555544322                                                                   


Q ss_pred             eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc-EEEEeCCCCceEEEeeCCc--cCEEEEEEecCCCE
Q 011978          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFRGHV--GPVYQISWSADSRL  416 (473)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~-v~lwd~~~~~~~~~~~~h~--~~v~~v~~sp~g~~  416 (473)
                                  +...+..|.+.+-+++|+|+|.+|||+|..|+ |||+...+|+.+..|+-..  ..|.+++|+||+++
T Consensus       165 ------------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~  232 (391)
T KOG2110|consen  165 ------------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF  232 (391)
T ss_pred             ------------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence                        22334467888999999999999999999997 6999999999999987433  35889999999999


Q ss_pred             EEEEeCCCcEEEEECCC
Q 011978          417 LLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       417 l~s~s~Dg~i~iwd~~~  433 (473)
                      |++.|..++|.||.+..
T Consensus       233 L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  233 LAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEecCCCeEEEEEecc
Confidence            99999999999998753

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.66  E-value=4.5e-16  Score=138.11  Aligned_cols=267  Identities=17%  Similarity=0.292  Sum_probs=187.3

Q ss_pred             CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC
Q 011978          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (473)
Q Consensus       150 ~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~  229 (473)
                      +.+-..+.++.+|++|+.|+..|.+..+|+.+++.....  .-...|..+.|...      ..|+......-+.|||- .
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHn------eq~~AVAQK~y~yvYD~-~  199 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHN------EQFFAVAQKKYVYVYDN-N  199 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcc------hHHHHhhhhceEEEecC-C
Confidence            344567899999999999999999999999988753211  11223444554331      24555666778889984 4


Q ss_pred             CeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978          230 RKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (473)
Q Consensus       230 ~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (473)
                      |..+.+++.| ..|..+.|-|-.+ |++++..|.++.-|+.+|+++..+......+..+..+|-                
T Consensus       200 GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~----------------  262 (545)
T KOG1272|consen  200 GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY----------------  262 (545)
T ss_pred             CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc----------------
Confidence            6667777655 3677788888775 667888899999999999988776544444433333221                


Q ss_pred             CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (473)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd  388 (473)
                                          ...+-.|...|++.+|.+. ...+..++..|.+.|.+|++.++|+|+||.+.|+.++|||
T Consensus       263 --------------------NaVih~GhsnGtVSlWSP~-skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD  321 (545)
T KOG1272|consen  263 --------------------NAVIHLGHSNGTVSLWSPN-SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD  321 (545)
T ss_pred             --------------------cceEEEcCCCceEEecCCC-CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence                                2246678889999999975 4456677889999999999999999999999999999999


Q ss_pred             CCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE-CCC--Cceeeccccc--CCCEEEEEEeeCCCEEEEEe
Q 011978          389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD-IRT--QKLKQDLPGH--ADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       389 ~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd-~~~--~~~~~~~~~h--~~~i~~l~~s~d~~~l~s~~  463 (473)
                      ++.-..+.++.. .-+...+++|..|. || +|....|.||. .-.  +.....+-.|  ...|..|.|.|-...|-.|.
T Consensus       322 lR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH  398 (545)
T KOG1272|consen  322 LRNFYQLHTYRT-PHPASNLSLSQKGL-LA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH  398 (545)
T ss_pred             eccccccceeec-CCCccccccccccc-ee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence            998876666654 34677888887663 33 34455799994 222  1111122222  24788888888776666555


Q ss_pred             CCC
Q 011978          464 KDR  466 (473)
Q Consensus       464 ~D~  466 (473)
                      ..|
T Consensus       399 ~~G  401 (545)
T KOG1272|consen  399 AGG  401 (545)
T ss_pred             cCC
Confidence            444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.5e-15  Score=135.19  Aligned_cols=126  Identities=29%  Similarity=0.465  Sum_probs=107.1

Q ss_pred             EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEE
Q 011978          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (473)
Q Consensus       144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~  223 (473)
                      ..+.||++-|.||+|+.||.+|++|+.|-.+.|||.-..+....+-.+|.+.|.++.|.|..   ..+.+++|+.|..|+
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t---nnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT---NNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC---CCeEEEeccCcceEE
Confidence            35779999999999999999999999999999999987777777778999999999999964   346889999999999


Q ss_pred             EEECCC----------CeEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCc
Q 011978          224 IWDVSL----------RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGK  272 (473)
Q Consensus       224 iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~  272 (473)
                      ++|+..          ......+..|...|..++..+++  .+.+++.||+|+-+|++...
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence            999974          22344556688888888877766  68899999999999998643

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=1.2e-12  Score=111.27  Aligned_cols=234  Identities=19%  Similarity=0.299  Sum_probs=154.3

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc--cCCCcCCcEEEEEeceeccCCCCceEE-EeeCC------CcE
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFV-SASKD------GDA  222 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~~~~~~-s~s~d------g~i  222 (473)
                      ...+++|+.|...++.|. |.-.++|+.+--+....  ...+. -.+..+-|       .+++++ .||.+      .++
T Consensus         7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G-~~~veMLf-------R~N~laLVGGg~~pky~pNkv   77 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGG-FKIVEMLF-------RSNYLALVGGGSRPKYPPNKV   77 (346)
T ss_pred             ceeEEEEccCCceEEEEe-cCceEEEecCchhhhhhhccccCc-hhhhhHhh-------hhceEEEecCCCCCCCCCceE
Confidence            355699999887666665 45578887654222110  00000 11111111       122333 33333      479


Q ss_pred             EEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCC-CceeeeeeccCce--EEEEEecccceeeecc
Q 011978          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHW--VNSLALSTEYALRTGA  299 (473)
Q Consensus       223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~  299 (473)
                      .|||-...+++.++. ...+|.++.+..+.+++  -..+.|++|...+ -+.++.+.....+  ..++.-..        
T Consensus        78 iIWDD~k~~~i~el~-f~~~I~~V~l~r~riVv--vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~--------  146 (346)
T KOG2111|consen   78 IIWDDLKERCIIELS-FNSEIKAVKLRRDRIVV--VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS--------  146 (346)
T ss_pred             EEEecccCcEEEEEE-eccceeeEEEcCCeEEE--EecCeEEEEEcCCChhheeeeecccCCCceEeecCCC--------
Confidence            999977777776653 45688889888775433  3467999998873 3444444321110  11111000        


Q ss_pred             ccCCCcccCCHHHHHHHHHhhhhcccCCCCceE-EEecCCceEEEEeCCCCCC-CeeeecCcccceeEEEECCCCcEEEE
Q 011978          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDGQWVAS  377 (473)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~v~~sp~g~~las  377 (473)
                                                  ....| .-|-.-|.+++-|+..... +......|...|.|++.+-+|.++||
T Consensus       147 ----------------------------~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT  198 (346)
T KOG2111|consen  147 ----------------------------NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT  198 (346)
T ss_pred             ----------------------------CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE
Confidence                                        01112 2244567888888765544 45778899999999999999999999


Q ss_pred             EECCCc-EEEEeCCCCceEEEeeC--CccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          378 ASFDKS-IKLWNGTTGKFVAVFRG--HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       378 gs~d~~-v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      +|..|+ |||||..+|+.+..++.  ....|.+++|||++.+||++|+-|++.||.++.
T Consensus       199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            999997 79999999999998864  235799999999999999999999999999875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.63  E-value=7.9e-13  Score=122.77  Aligned_cols=296  Identities=19%  Similarity=0.163  Sum_probs=166.8

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCCccccccC
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPL  189 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~~~~~~~~  189 (473)
                      -..+.|+|||+++++++.||.|.++|+.+.+.+....... ....+++|+||++++++. .++.+.++|.++.+......
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            3457899999999999999999999999998877766433 467899999999998776 57999999999877654321


Q ss_pred             CC------cCCcEEEEEeceeccCCCCceEEEeeC-CCcEEEEECCCCeEEE-EecCccccEEEEEecCCCe-E-EEeec
Q 011978          190 SG------HKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGV-I-YTGSQ  259 (473)
Q Consensus       190 ~~------~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~-l-~s~~~  259 (473)
                      .+      ....+.++...|     ....|+..-. .+.|.+-|....+.+. ....-........|++++. + ++.-.
T Consensus       118 ~~~~~~~~~~~Rv~aIv~s~-----~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~  192 (369)
T PF02239_consen  118 TGGMPVDGPESRVAAIVASP-----GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG  192 (369)
T ss_dssp             --EE-TTTS---EEEEEE-S-----SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG
T ss_pred             cccccccccCCCceeEEecC-----CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc
Confidence            11      223455555444     2234554444 4777777876543222 1212223455678898873 3 44566


Q ss_pred             CCeEEEEECCCCceeeeeec----cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          260 DCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      .+.+-++|..+++.+..+..    |..+...+. ++.+...-. ..+                         .....++.
T Consensus       193 sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~-~~~-------------------------~~~~~~~~  245 (369)
T PF02239_consen  193 SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGFGPVWA-TSG-------------------------LGYFAIPL  245 (369)
T ss_dssp             GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTTEEEEE-EEB-------------------------SSSSEEEE
T ss_pred             cceeEEEeeccceEEEEeecccccccccccccc-CCCcceEEe-ecc-------------------------ccceeccc
Confidence            77999999999887765432    222222221 121100000 000                         00011111


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE----ECCCcEEEEeCCCCceEEEeeCCc-cCEEEEEE
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA----SFDKSIKLWNGTTGKFVAVFRGHV-GPVYQISW  410 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg----s~d~~v~lwd~~~~~~~~~~~~h~-~~v~~v~~  410 (473)
                      -....+.+||....+.. ..+...... .-+..||+++++...    ...++|.++|.++.+.+..+.... ..+..+.|
T Consensus       246 ig~~~v~v~d~~~wkvv-~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef  323 (369)
T PF02239_consen  246 IGTDPVSVHDDYAWKVV-KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF  323 (369)
T ss_dssp             EE--TTT-STTTBTSEE-EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred             ccCCccccchhhcCeEE-EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence            11112223443332222 222222223 557789999999998    345799999999998777765332 25899999


Q ss_pred             ecCCCEEEEEeC--CCcEEEEECCCCceeeccc
Q 011978          411 SADSRLLLSGSK--DSTLKVWDIRTQKLKQDLP  441 (473)
Q Consensus       411 sp~g~~l~s~s~--Dg~i~iwd~~~~~~~~~~~  441 (473)
                      ++||+++..+..  ++.|.+||..+.+.+.+++
T Consensus       324 ~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  324 NPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             -TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            999997655544  3369999999998887776

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=6.6e-13  Score=127.10  Aligned_cols=233  Identities=18%  Similarity=0.185  Sum_probs=150.1

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec---CCeEEEeeCCCCccccccCCCcCCcEEEEEeceecc
Q 011978          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (473)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~  206 (473)
                      ..|.+||.....+. .+..+...+.+.+|||||+.|+..+.   +..|++|++.+++...  +......+....|+|   
T Consensus       179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~~~~~SP---  252 (429)
T PRK03629        179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNGAPAFSP---  252 (429)
T ss_pred             eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcCCeEECC---
Confidence            37889988765433 23445678999999999999987543   3579999998875322  112222234566776   


Q ss_pred             CCCCceEEEe-eCCC--cEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee-cCCeEEEE--ECCCCceeeeeec
Q 011978          207 NAPCRRFVSA-SKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVW--ETTQGKLIRELKG  279 (473)
Q Consensus       207 ~~~~~~~~s~-s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~i~~w--d~~~~~~~~~~~~  279 (473)
                        ++.+++.. +.+|  .|.+||+.+++..... .+...+....|++||. |+..+ .++...+|  |+.++... .   
T Consensus       253 --DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~---  325 (429)
T PRK03629        253 --DGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R---  325 (429)
T ss_pred             --CCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E---
Confidence              55566643 4444  5888999887655433 3344667889999984 54443 33444444  33322110 0   


Q ss_pred             cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (473)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  359 (473)
                                                                                                  +..+
T Consensus       326 ----------------------------------------------------------------------------lt~~  329 (429)
T PRK03629        326 ----------------------------------------------------------------------------ITWE  329 (429)
T ss_pred             ----------------------------------------------------------------------------eecC
Confidence                                                                                        0000


Q ss_pred             ccceeEEEECCCCcEEEEEECC---CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc---EEEEECCC
Q 011978          360 QQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST---LKVWDIRT  433 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~---i~iwd~~~  433 (473)
                      .......+|+|||++|+..+.+   ..|.+||+.+++.......  .......|+|||++|+.++.|+.   ++++++. 
T Consensus       330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-  406 (429)
T PRK03629        330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-  406 (429)
T ss_pred             CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-
Confidence            1123457899999999887654   3588899988865433222  22346789999999999988775   6677774 


Q ss_pred             CceeecccccCCCEEEEEEee
Q 011978          434 QKLKQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       434 ~~~~~~~~~h~~~i~~l~~s~  454 (473)
                      ++....+.+|...+...+|+|
T Consensus       407 G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        407 GRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCeEECccCCCCcCCcccCC
Confidence            555567778888888999987

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=3.8e-13  Score=128.88  Aligned_cols=234  Identities=21%  Similarity=0.276  Sum_probs=147.4

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCccccccCCCcCCcEEEEEeceecc
Q 011978          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (473)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~  206 (473)
                      ..|.++|..+.. ...+..+...+.+.+|+|||+.|+..+.+   ..|++||+.+++...  +......+....|+|   
T Consensus       176 ~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~~~~~~~SP---  249 (427)
T PRK02889        176 YQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGSNSAPAWSP---  249 (427)
T ss_pred             cEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCCccceEECC---
Confidence            467777775433 33445677789999999999999887653   359999998886432  222333445677776   


Q ss_pred             CCCCceEE-EeeCCCcEEEEEC--CCCeEEEEecCccccEEEEEecCCCe-EE-EeecCCeEEEEECC--CCceeeeeec
Q 011978          207 NAPCRRFV-SASKDGDARIWDV--SLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETT--QGKLIRELKG  279 (473)
Q Consensus       207 ~~~~~~~~-s~s~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~--~~~~~~~~~~  279 (473)
                        ++.+++ +.+.++...||.+  ..+. ...+..+........|++||. ++ ++..++...+|.+.  +++. ..   
T Consensus       250 --DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~---  322 (427)
T PRK02889        250 --DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QR---  322 (427)
T ss_pred             --CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EE---
Confidence              455665 5677887777754  3333 344444555556778999884 44 33344555555432  1110 00   


Q ss_pred             cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (473)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  359 (473)
                                                                          + +                     .  +
T Consensus       323 ----------------------------------------------------l-t---------------------~--~  326 (427)
T PRK02889        323 ----------------------------------------------------V-T---------------------F--T  326 (427)
T ss_pred             ----------------------------------------------------E-e---------------------c--C
Confidence                                                                0 0                     0  0


Q ss_pred             ccceeEEEECCCCcEEEEEECCC---cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEEECCC
Q 011978          360 QQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVWDIRT  433 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d~---~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iwd~~~  433 (473)
                      .......+|+|||++|+..+.++   .|.+||+.+++......+  .......|+|||++|+.++.++   .+++.++ .
T Consensus       327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~  403 (427)
T PRK02889        327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-D  403 (427)
T ss_pred             CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence            01122467999999999877654   599999988875443322  2346789999999988877554   3555566 3


Q ss_pred             CceeecccccCCCEEEEEEeeC
Q 011978          434 QKLKQDLPGHADEVFAVDWSPD  455 (473)
Q Consensus       434 ~~~~~~~~~h~~~i~~l~~s~d  455 (473)
                      ++....+..+.+.+...+|+|-
T Consensus       404 g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        404 GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCceEEeecCCCCCCCCccCCC
Confidence            5555556556667778888873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=3.8e-13  Score=129.39  Aligned_cols=233  Identities=24%  Similarity=0.289  Sum_probs=148.3

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCccccccCCCcCCcEEEEEeceecc
Q 011978          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (473)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~  206 (473)
                      ..|.+||..+..+ ..+..+...+.+..|+|||+.|+..+.+   ..|++||+.+++...  +...........|+|   
T Consensus       184 ~~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~~~~g~~~~~~~Sp---  257 (433)
T PRK04922        184 YALQVADSDGYNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--VASFRGINGAPSFSP---  257 (433)
T ss_pred             EEEEEECCCCCCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--eccCCCCccCceECC---
Confidence            4689999865443 3455567789999999999999987744   469999998776432  222333334566666   


Q ss_pred             CCCCceEE-EeeCCC--cEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee-cCCe--EEEEECCCCceeeeeec
Q 011978          207 NAPCRRFV-SASKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDCT--IKVWETTQGKLIRELKG  279 (473)
Q Consensus       207 ~~~~~~~~-s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~--i~~wd~~~~~~~~~~~~  279 (473)
                        ++.+++ +.+.++  .|.+||+.+++.. .+..+.......+|++||. ++..+ .++.  |.++|+.+++..+ +  
T Consensus       258 --DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-l--  331 (433)
T PRK04922        258 --DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-L--  331 (433)
T ss_pred             --CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e--
Confidence              455554 455555  5899999887653 3444544556788999884 44433 4444  4444443322110 0  


Q ss_pred             cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (473)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  359 (473)
                                                                                                   ..+
T Consensus       332 -----------------------------------------------------------------------------t~~  334 (433)
T PRK04922        332 -----------------------------------------------------------------------------TFQ  334 (433)
T ss_pred             -----------------------------------------------------------------------------ecC
Confidence                                                                                         000


Q ss_pred             ccceeEEEECCCCcEEEEEECCC---cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEECCC
Q 011978          360 QQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDIRT  433 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d~---~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~~~  433 (473)
                      ......++|+|||++|+..+.++   .|.+||+.+++.. .+. +........|+|||++|+..+.+   +.++++++..
T Consensus       335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            01123478999999998876543   5999999888755 332 22245567999999988877653   3578888854


Q ss_pred             CceeecccccCCCEEEEEEee
Q 011978          434 QKLKQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       434 ~~~~~~~~~h~~~i~~l~~s~  454 (473)
                       .....+..+...+...+|+|
T Consensus       413 -~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        413 -RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             -CceEEcccCCCCCCCCccCC
Confidence             34455555556677788886

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.8e-13  Score=118.09  Aligned_cols=246  Identities=14%  Similarity=0.180  Sum_probs=171.7

Q ss_pred             EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC------CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC
Q 011978          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (473)
Q Consensus       145 ~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~  218 (473)
                      .+.+|.+.|.++.||.++++|++|+.|-.+++|+++.      .+++...-..|...|.++.|..     ....+.+|+.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-----~N~~~~SG~~  125 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-----ENRFLYSGER  125 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-----CCeeEecCCC
Confidence            3568999999999999999999999999999999753      2333333445668899998764     4457889999


Q ss_pred             CCcEEEEECCCCeEEEEecCc--cccEEEEEecC-CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978          219 DGDARIWDVSLRKCVICLSGH--TLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (473)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (473)
                      +++|...|+++.+.+..+...  .+.|..+..+| |+.+++.+.++.|.+||.+..+.      |...+           
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~------~~~~~-----------  188 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN------PISLV-----------  188 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC------CCcee-----------
Confidence            999999999998888766422  24677777665 55788888888888888765321      00000           


Q ss_pred             eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcE
Q 011978          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQW  374 (473)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~  374 (473)
                                                                                 .+........++-|+|. ..+
T Consensus       189 -----------------------------------------------------------~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  189 -----------------------------------------------------------LPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             -----------------------------------------------------------eecCCCccceeeeecCCCcee
Confidence                                                                       00111233556778884 568


Q ss_pred             EEEEECCCcEEEEeCCCCce-EEE---eeCC---ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC---
Q 011978          375 VASASFDKSIKLWNGTTGKF-VAV---FRGH---VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA---  444 (473)
Q Consensus       375 lasgs~d~~v~lwd~~~~~~-~~~---~~~h---~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~---  444 (473)
                      |++.+..+-+-+||.+.... +..   +.+-   ...-.++.|+|+|+.+.+--....=.+||+.++++..--..|.   
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            88999999999999875431 111   1111   1123678999999988876655556778888765432111222   


Q ss_pred             ----CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          445 ----DEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       445 ----~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                          ..+.+++|-.|- -+++|+.+-.|.+|.
T Consensus       290 Y~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wk  320 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDDY-TVATGSDHWGIHIWK  320 (609)
T ss_pred             ceeeeeeeeeeeecce-eeeccCcccceEEEe
Confidence                246678888764 489999999999996

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.59  E-value=4.6e-15  Score=131.83  Aligned_cols=222  Identities=16%  Similarity=0.203  Sum_probs=167.1

Q ss_pred             CCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEE
Q 011978          208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL  287 (473)
Q Consensus       208 ~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~  287 (473)
                      .++..++.|+..|.+..+|..+++....+. -...|..+.|-.+..+++......+++||- .|..++.++.+. .|..+
T Consensus       139 rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~-~v~rL  215 (545)
T KOG1272|consen  139 RNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHI-RVARL  215 (545)
T ss_pred             CCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcC-chhhh
Confidence            466789999999999999999988776653 234677888877777888888999999995 455555555432 23333


Q ss_pred             EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEE
Q 011978          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY  367 (473)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~  367 (473)
                      .|-|-.                                    -.|++++..|-+..-|+..++... .+....+.+..++
T Consensus       216 eFLPyH------------------------------------fLL~~~~~~G~L~Y~DVS~GklVa-~~~t~~G~~~vm~  258 (545)
T KOG1272|consen  216 EFLPYH------------------------------------FLLVAASEAGFLKYQDVSTGKLVA-SIRTGAGRTDVMK  258 (545)
T ss_pred             cccchh------------------------------------heeeecccCCceEEEeechhhhhH-HHHccCCccchhh
Confidence            333221                                    147788888889888877654322 2222345567788


Q ss_pred             ECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCE
Q 011978          368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV  447 (473)
Q Consensus       368 ~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i  447 (473)
                      -+|-+..+-+|...|+|.+|...+.+++..+-.|.++|.++++.++|+|+||.+.|..++|||++....+.++.. .-..
T Consensus       259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a  337 (545)
T KOG1272|consen  259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA  337 (545)
T ss_pred             cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence            899999999999999999999999998888888999999999999999999999999999999998765554443 2345


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          448 FAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       448 ~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ..+++|..|  +..+|....+.||.
T Consensus       338 ~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  338 SNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             ccccccccc--ceeeecCCeeeeeh
Confidence            678888654  44555555688885

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1.2e-12  Score=119.71  Aligned_cols=284  Identities=17%  Similarity=0.254  Sum_probs=187.8

Q ss_pred             CCcccEEEEEECCCCCeE-EEEeCCCeEEEEeCCCCceeEEEcCCC-CC-EEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978          106 GHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHK-NW-VLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~l-at~s~d~~i~iwd~~~~~~~~~~~~~~-~~-v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~  182 (473)
                      +|...-+.|..+|||+++ |+|.+.-.|++||+..-..  .+..|. .. |.-.-.+.|-..++.-..|.+|.+... -|
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G  125 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YG  125 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhh-cC
Confidence            467777889999999985 6777899999999976432  233342 22 332333444445555556666655432 12


Q ss_pred             ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEeecCC
Q 011978          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDC  261 (473)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~  261 (473)
                      ..-...++.   .-..+.++.    ..|. +..++....|.-.+++.|..+.-+......++++..++. |+|++|+.||
T Consensus       126 ~hy~~RIP~---~GRDm~y~~----~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g  197 (703)
T KOG2321|consen  126 RHYRTRIPK---FGRDMKYHK----PSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG  197 (703)
T ss_pred             eeeeeecCc---CCccccccC----CCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCc
Confidence            111000000   001122221    2344 444555567777888888888777777788999999875 5677888899


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      .+-.||.+....+..+..... |.+                                                       
T Consensus       198 ~VEfwDpR~ksrv~~l~~~~~-v~s-------------------------------------------------------  221 (703)
T KOG2321|consen  198 VVEFWDPRDKSRVGTLDAASS-VNS-------------------------------------------------------  221 (703)
T ss_pred             eEEEecchhhhhheeeecccc-cCC-------------------------------------------------------
Confidence            999999887665544432110 000                                                       


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC--ccCEEEEEEecCC--CEE
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADS--RLL  417 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h--~~~v~~v~~sp~g--~~l  417 (473)
                                  .........|+++.|+.+|-.+++|..+|.+.|||+++.+++..- .|  .-+|..+.|.+.+  ..+
T Consensus       222 ------------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v  288 (703)
T KOG2321|consen  222 ------------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKV  288 (703)
T ss_pred             ------------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceE
Confidence                        000011235899999999999999999999999999998876553 34  3579999998753  455


Q ss_pred             EEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      +|. ....++|||-.+++....+... ..++.+++-|++.++.++-.+..+..+
T Consensus       289 ~S~-Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  289 VSM-DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             Eec-chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeE
Confidence            544 3457999999999987777543 459999999999999999888776544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=3.8e-12  Score=122.64  Aligned_cols=232  Identities=16%  Similarity=0.179  Sum_probs=147.4

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec---CCeEEEeeCCCCccccccCCCcCCcEEEEEeceecc
Q 011978          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (473)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~  206 (473)
                      ..|.+||..+..+ ..+..|...+.+..|+|||+.|+..+.   +..|++||+.+++..  .+..+...+....|+|   
T Consensus       182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--~l~~~~g~~~~~~~SP---  255 (435)
T PRK05137        182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--LVGNFPGMTFAPRFSP---  255 (435)
T ss_pred             eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--EeecCCCcccCcEECC---
Confidence            4788888865443 445677888999999999999988764   468999999887643  2334455556667776   


Q ss_pred             CCCCceEE-EeeCCCc--EEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee-cCC--eEEEEECCCCceeeeeec
Q 011978          207 NAPCRRFV-SASKDGD--ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDC--TIKVWETTQGKLIRELKG  279 (473)
Q Consensus       207 ~~~~~~~~-s~s~dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~--~i~~wd~~~~~~~~~~~~  279 (473)
                        ++.+++ +.+.++.  |.+||+.++... .+..+........|++||. ++..+ .++  .|.++|+..++.. .   
T Consensus       256 --DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~---  328 (435)
T PRK05137        256 --DGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-R---  328 (435)
T ss_pred             --CCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-E---
Confidence              455554 5555655  667788877653 3455555567788999883 44333 333  4555554332211 0   


Q ss_pred             cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (473)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  359 (473)
                                                                                                  +..+
T Consensus       329 ----------------------------------------------------------------------------lt~~  332 (435)
T PRK05137        329 ----------------------------------------------------------------------------ISFG  332 (435)
T ss_pred             ----------------------------------------------------------------------------eecC
Confidence                                                                                        0001


Q ss_pred             ccceeEEEECCCCcEEEEEECC---CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC------CcEEEEE
Q 011978          360 QQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD------STLKVWD  430 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D------g~i~iwd  430 (473)
                      ...+....|+|||++|+..+.+   ..|.+||...+.. ..+.. ...+..+.|+|||++|+..+.+      ..++++|
T Consensus       333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d  410 (435)
T PRK05137        333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD  410 (435)
T ss_pred             CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence            1123456799999999887654   3588888765543 33322 2346788999999988776543      2578888


Q ss_pred             CCCCceeecccccCCCEEEEEEee
Q 011978          431 IRTQKLKQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       431 ~~~~~~~~~~~~h~~~i~~l~~s~  454 (473)
                      +..+.. ..+.. ...+...+|+|
T Consensus       411 l~g~~~-~~l~~-~~~~~~p~Wsp  432 (435)
T PRK05137        411 LTGRNE-REVPT-PGDASDPAWSP  432 (435)
T ss_pred             CCCCce-EEccC-CCCccCcccCC
Confidence            876544 34432 33466778876

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.55  E-value=5.6e-12  Score=107.72  Aligned_cols=329  Identities=20%  Similarity=0.338  Sum_probs=191.9

Q ss_pred             ccEEEEEECCCCCeEE-EEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEE-EEecCCeEEEeeCCCCcccc
Q 011978          109 EAVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSG  186 (473)
Q Consensus       109 ~~V~~~~~sp~~~~la-t~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~  186 (473)
                      +.|.-+.|..|.-++. .+..|+.|.+|++....-..+.....+++.++.|||||++|+ +...+-.|.+|.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            5667788888877654 456789999999986655556666778899999999997666 55678899999998866543


Q ss_pred             ccCCCcCCcEEEEEeceeccC------CCCce---------------E------EEe---e-CCCcEEEEECCCCeEEEE
Q 011978          187 NPLSGHKKWITGISWEPVHLN------APCRR---------------F------VSA---S-KDGDARIWDVSLRKCVIC  235 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~------~~~~~---------------~------~s~---s-~dg~i~iwd~~~~~~~~~  235 (473)
                      ....  +..+.+++|+|...-      .+|..               |      ++|   + .+..+.+||--....+..
T Consensus       129 ~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a  206 (447)
T KOG4497|consen  129 LPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA  206 (447)
T ss_pred             eccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence            2222  223466666653100      00100               0      011   1 223456676443322222


Q ss_pred             ecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHH
Q 011978          236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (473)
Q Consensus       236 ~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (473)
                      . .....+..++|+|-+ .++.|+.|+.+|+-+--+-+....+- |-..+..-...   .+....+              
T Consensus       207 Y-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~---~~~ke~~--------------  267 (447)
T KOG4497|consen  207 Y-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLH---LLEKETF--------------  267 (447)
T ss_pred             e-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhh---hhhhhhc--------------
Confidence            1 122467888999854 68889999999986644433332211 00000000000   0000000              


Q ss_pred             HHHHhhhhcccCCCCceEEEecCCceEEEEeCC-------C------CCCCeeeecCcccceeEEEECCCCcEEEEEECC
Q 011978          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPA-------V------SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (473)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-------~------~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d  381 (473)
                      ...........-. +       .|-...+|...       .      ..++.....+....+..++|++|..|+||-.+.
T Consensus       268 ~~~ql~~~cLsf~-p-------~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~  339 (447)
T KOG4497|consen  268 SIVQLLHHCLSFT-P-------TDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK  339 (447)
T ss_pred             chhhhcccccccC-C-------CccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCC
Confidence            0000000000000 0       00011111110       0      001112223334567789999999999997543


Q ss_pred             --CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEE
Q 011978          382 --KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV  459 (473)
Q Consensus       382 --~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l  459 (473)
                        +.+-+||++..+...++. ...+|....|.|....|+.+.....+++|......... .++..-.|..+.|.-+|..+
T Consensus       340 ~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i  417 (447)
T KOG4497|consen  340 YPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFI  417 (447)
T ss_pred             CCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEE
Confidence              579999999877655553 35689999999998888888777789999876644433 23334579999999999999


Q ss_pred             EEEeCCCcE
Q 011978          460 ASGGKDRVL  468 (473)
Q Consensus       460 ~s~~~D~~i  468 (473)
                      +-.+.|.-.
T Consensus       418 ~l~~kDafc  426 (447)
T KOG4497|consen  418 VLCGKDAFC  426 (447)
T ss_pred             EEEcCCceE
Confidence            999998643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=3.9e-13  Score=113.38  Aligned_cols=108  Identities=31%  Similarity=0.611  Sum_probs=87.8

Q ss_pred             ccceeEEEECCCCcEEEEE--ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEECCCC
Q 011978          360 QQLVNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDIRTQ  434 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasg--s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~~~~  434 (473)
                      ...|.+++|+|+|+.+|..  ..++.|.+||.+ ++.+..+.  ...++.+.|||+|++|++++.+   |.|.+||+++.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            4469999999999987654  456799999996 66666664  5678999999999999998754   56999999988


Q ss_pred             ceeecccccCCCEEEEEEeeCCCEEEEEeC------CCcEEecc
Q 011978          435 KLKQDLPGHADEVFAVDWSPDGEKVASGGK------DRVLKLWM  472 (473)
Q Consensus       435 ~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~~w~  472 (473)
                      +.+.... |. .+..++|||||++|++++.      |+.++||.
T Consensus       136 ~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  136 KKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             EEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence            8777664 33 4789999999999999875      67788885

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.55  E-value=2.5e-11  Score=112.76  Aligned_cols=306  Identities=17%  Similarity=0.155  Sum_probs=168.7

Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEece
Q 011978          124 ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP  203 (473)
Q Consensus       124 at~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~  203 (473)
                      ++-..++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.......+.  ...++++++
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~--~~~~i~~s~   87 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG--NPRGIAVSP   87 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS--EEEEEEE--
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC--CcceEEEcC
Confidence            455678999999999988888776544444557899999999999999999999999988655443332  234555554


Q ss_pred             eccCCCCceEEEe-eCCCcEEEEECCCCeEEEEecCc-------cccEEEEEecCCC-eEEEe-ecCCeEEEEECCCCce
Q 011978          204 VHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSGH-------TLAVTCVKWGGDG-VIYTG-SQDCTIKVWETTQGKL  273 (473)
Q Consensus       204 ~~~~~~~~~~~s~-s~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~-~l~s~-~~d~~i~~wd~~~~~~  273 (473)
                           ++++++++ -..+.+.++|.++.+.+..+...       ...+..+..++.+ .++.. -.-+.|-+-|..+.+.
T Consensus        88 -----DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   88 -----DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             -----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             -----CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence                 56666654 57899999999998888776532       2244555545444 24444 3447777777665432


Q ss_pred             eee-eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC
Q 011978          274 IRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP  352 (473)
Q Consensus       274 ~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  352 (473)
                      ... ....+.......+.++           ++.                        .++....+..+-++|....+..
T Consensus       163 ~~~~~i~~g~~~~D~~~dpd-----------gry------------------------~~va~~~sn~i~viD~~~~k~v  207 (369)
T PF02239_consen  163 LKVTTIKVGRFPHDGGFDPD-----------GRY------------------------FLVAANGSNKIAVIDTKTGKLV  207 (369)
T ss_dssp             EEEEEEE--TTEEEEEE-TT-----------SSE------------------------EEEEEGGGTEEEEEETTTTEEE
T ss_pred             cceeeecccccccccccCcc-----------cce------------------------eeecccccceeEEEeeccceEE
Confidence            211 1111111222223322           221                        1333344445556664432211


Q ss_pred             eeeec---CcccceeEE---------EECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978          353 KTRMT---GHQQLVNHV---------YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       353 ~~~~~---~~~~~v~~v---------~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~  420 (473)
                      .....   .|......+         +....+...++.-....+.+||..+.+.+..+....++ .-+.-+|+++++.+.
T Consensus       208 ~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd  286 (369)
T PF02239_consen  208 ALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD  286 (369)
T ss_dssp             EEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred             EEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence            11111   111111111         11122222222222235667898999999999877666 778889999999987


Q ss_pred             ----eCCCcEEEEECCCCceeecccccC-CCEEEEEEeeCCCEEEEEeCC--CcEEecc
Q 011978          421 ----SKDSTLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGEKVASGGKD--RVLKLWM  472 (473)
Q Consensus       421 ----s~Dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~d~~~l~s~~~D--~~i~~w~  472 (473)
                          ...++|.++|.++.+...++.... ..+..+.|++||+++-.+..|  +.|.+++
T Consensus       287 ~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  287 TFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             -TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred             ccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence                445789999999987776664322 358999999999977544433  3688875

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4.7e-12  Score=121.28  Aligned_cols=220  Identities=20%  Similarity=0.257  Sum_probs=140.2

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEe---CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE-ecCC--eEE
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGS---GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAG--ELQ  175 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s---~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~-~~dg--~i~  175 (473)
                      ..+..+...+.+.+|||||+.||..+   .+..|.+||+.+++... +......+..+.|+|||+.|+.. +.+|  .|+
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence            44555667899999999999998764   34579999998875432 22233335578999999988865 4444  589


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC-CcEEEE--ECCCCeEEEEecCccccEEEEEecCCC
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-GDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDG  252 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-g~i~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~  252 (473)
                      +||+++++...  +..+...+....|+|     +++.++..+.+ +...+|  |+.++... .+..+.....+..|++||
T Consensus       271 ~~d~~tg~~~~--lt~~~~~~~~~~wSP-----DG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG  342 (429)
T PRK03629        271 VMDLASGQIRQ--VTDGRSNNTEPTWFP-----DSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDG  342 (429)
T ss_pred             EEECCCCCEEE--ccCCCCCcCceEECC-----CCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCC
Confidence            99998876432  233334556677776     55667666543 444555  66655432 222233345567889887


Q ss_pred             e-EEEee-cC--CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978          253 V-IYTGS-QD--CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (473)
Q Consensus       253 ~-l~s~~-~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
                      . ++..+ .+  ..|.+||+.+++.. .+.                                                  
T Consensus       343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt--------------------------------------------------  371 (429)
T PRK03629        343 KFMVMVSSNGGQQHIAKQDLATGGVQ-VLT--------------------------------------------------  371 (429)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeE-EeC--------------------------------------------------
Confidence            3 44333 22  34666776554321 000                                                  


Q ss_pred             CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc---EEEEeCCCCceEEEeeCCccCE
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS---IKLWNGTTGKFVAVFRGHVGPV  405 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~---v~lwd~~~~~~~~~~~~h~~~v  405 (473)
                                                   . ........|+|||++|+.++.++.   +.++++ +|.....+.+|.+.+
T Consensus       372 -----------------------------~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~  420 (429)
T PRK03629        372 -----------------------------D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQV  420 (429)
T ss_pred             -----------------------------C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCc
Confidence                                         0 000123579999999999998764   677777 456667777888889


Q ss_pred             EEEEEec
Q 011978          406 YQISWSA  412 (473)
Q Consensus       406 ~~v~~sp  412 (473)
                      ...+|+|
T Consensus       421 ~~p~Wsp  427 (429)
T PRK03629        421 KFPAWSP  427 (429)
T ss_pred             CCcccCC
Confidence            9999987

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.53  E-value=1.3e-12  Score=112.22  Aligned_cols=276  Identities=19%  Similarity=0.323  Sum_probs=171.7

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce-----eEEEcCCC------------CCEEEEEECCCC--CeEEEE
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-----MFKCTGHK------------NWVLCIAWSADG--KHLVSG  168 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~-----~~~~~~~~------------~~v~~l~~s~dg--~~l~s~  168 (473)
                      .+-|.++.|...|.+||||..+|.|.++.-.....     ...++.|+            ..|..+.|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            45688999999999999999999999996532211     11233443            247788898765  466778


Q ss_pred             ecCCeEEEeeCCCCcccc----ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE-EecCccccE
Q 011978          169 SKAGELQCWDPQTGKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAV  243 (473)
Q Consensus       169 ~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~v  243 (473)
                      +.|.+|++|.+.......    .+..+....++.+......   ....++.+              .+.. .-.+|..-|
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~---~~~~~vea--------------~prRv~aNaHtyhi  167 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEG---RHDLEVEA--------------SPRRVYANAHTYHI  167 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeec---cccceeee--------------eeeeeccccceeEe
Confidence            899999999886533211    0011111122222110000   00011100              1111 124688889


Q ss_pred             EEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978          244 TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (473)
Q Consensus       244 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (473)
                      .++++++|+..+.++.|=.|.+|+++--                                                    
T Consensus       168 NSIS~NsD~Et~lSADdLRINLWnlei~----------------------------------------------------  195 (433)
T KOG1354|consen  168 NSISVNSDKETFLSADDLRINLWNLEII----------------------------------------------------  195 (433)
T ss_pred             eeeeecCccceEeeccceeeeecccccc----------------------------------------------------
Confidence            9999999987777788889999987521                                                    


Q ss_pred             ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCceE----EE-
Q 011978          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFV----AV-  397 (473)
Q Consensus       324 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~----~~-  397 (473)
                                    |+...|-|+..     ..|..-...|++..|+|. .++++..+..|+|++-|++...+.    .. 
T Consensus       196 --------------d~sFnIVDIKP-----~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  196 --------------DQSFNIVDIKP-----ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             --------------CCceeEEEccc-----cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence                          11111112111     112222345777789984 567888889999999998843211    11 


Q ss_pred             -----------eeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeecccccC------------CCE---EEE
Q 011978          398 -----------FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR-TQKLKQDLPGHA------------DEV---FAV  450 (473)
Q Consensus       398 -----------~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~h~------------~~i---~~l  450 (473)
                                 |.+-...|.++.|+++|+++++-+. -+|++||+. ..+...+.+-|.            +.|   +.+
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence                       1122346899999999999987543 589999994 444444444332            333   458


Q ss_pred             EEeeCCCEEEEEeCCCcEEecc
Q 011978          451 DWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       451 ~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +|+.++.++.||+.....+++.
T Consensus       336 ~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  336 SWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             EEcCCcceEecccccceEEEec
Confidence            9999999999999999988875

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=1.7e-12  Score=126.73  Aligned_cols=186  Identities=20%  Similarity=0.347  Sum_probs=144.1

Q ss_pred             CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978          251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (473)
Q Consensus       251 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (473)
                      +..++.+..++.+-+||...+.....+............-                                ...+..+-
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~--------------------------------~g~s~~~~  146 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI--------------------------------IGDSAEEL  146 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE--------------------------------EeccCcEE
Confidence            4468888899999999987766554433222111100000                                00001123


Q ss_pred             eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE-EeeCCccCEEEEE
Q 011978          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQIS  409 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~-~~~~h~~~v~~v~  409 (473)
                      .+++|+--+.+.+|++.....+ ..+.+|.+.+-++.++-||+++++.|+|+++|+|++.+.+... +.-+|+..|+.+.
T Consensus       147 ~i~~gsv~~~iivW~~~~dn~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~  225 (967)
T KOG0974|consen  147 YIASGSVFGEIIVWKPHEDNKP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC  225 (967)
T ss_pred             EEEeccccccEEEEeccccCCc-ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence            5788899999999998743333 3789999999999999999999999999999999999988765 6668999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCceeecccccC-CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |.|+  .+++++.|-+.++|+.... .+..+.+|. +.|..++..++.-.+++++.|+.+++|+
T Consensus       226 ~~~n--~i~t~gedctcrvW~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  226 FLPN--RIITVGEDCTCRVWGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             eccc--eeEEeccceEEEEEecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            9998  9999999999999976543 344777776 4699999999999999999999999995

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.50  E-value=6.7e-14  Score=126.73  Aligned_cols=123  Identities=28%  Similarity=0.544  Sum_probs=102.4

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~  187 (473)
                      .+.|+..+|+|||++||+.|.||.+||+|..+...+...+..-+...|++|||||++|++|+.|.-|.+|.....+.+. 
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA-  368 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA-  368 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE-
Confidence            3489999999999999999999999999999877665556666789999999999999999999999999998877554 


Q ss_pred             cCCCcCCcEEEEEeceeccC-------------------------------------------CCCceEEEeeCCCcEEE
Q 011978          188 PLSGHKKWITGISWEPVHLN-------------------------------------------APCRRFVSASKDGDARI  224 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~-------------------------------------------~~~~~~~s~s~dg~i~i  224 (473)
                      .-.+|+.+|+.++|.|-...                                           ....+|.+.+.|..+.+
T Consensus       369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL  448 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL  448 (636)
T ss_pred             eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence            35799999999999852100                                           01247888999999999


Q ss_pred             EECCCCe
Q 011978          225 WDVSLRK  231 (473)
Q Consensus       225 wd~~~~~  231 (473)
                      ||+....
T Consensus       449 WDlteD~  455 (636)
T KOG2394|consen  449 WDLTEDV  455 (636)
T ss_pred             Eecchhh
Confidence            9987543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=8.6e-12  Score=106.22  Aligned_cols=224  Identities=13%  Similarity=0.204  Sum_probs=140.1

Q ss_pred             CCCceEEEeeCCCcEEEEECCCCeEEEEecCcc--ccEEEEEecCCCeEEEeecC------CeEEEEECCCCceeeeeec
Q 011978          208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHT--LAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       208 ~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~  279 (473)
                      .+..-|+.+.. .-.+||+.+--+......-+.  ..+..+-|..+=..+.|+..      +.+.|||-...+++.++..
T Consensus        15 QD~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f   93 (346)
T KOG2111|consen   15 QDHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSF   93 (346)
T ss_pred             cCCceEEEEec-CceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEe
Confidence            34455665554 447888876432211111111  12222223323233344433      5789999777777666543


Q ss_pred             cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC-CCCeee-ec
Q 011978          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-KQPKTR-MT  357 (473)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~-~~  357 (473)
                       ..+|.++.+..+                                      +++.. ..+.|++|..... ++.... ..
T Consensus        94 -~~~I~~V~l~r~--------------------------------------riVvv-l~~~I~VytF~~n~k~l~~~et~  133 (346)
T KOG2111|consen   94 -NSEIKAVKLRRD--------------------------------------RIVVV-LENKIYVYTFPDNPKLLHVIETR  133 (346)
T ss_pred             -ccceeeEEEcCC--------------------------------------eEEEE-ecCeEEEEEcCCChhheeeeecc
Confidence             234555554432                                      23322 3567778865422 111111 11


Q ss_pred             CcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCce--EEEeeCCccCEEEEEEecCCCEEEEEeCCCc-EEEEECCC
Q 011978          358 GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAVFRGHVGPVYQISWSADSRLLLSGSKDST-LKVWDIRT  433 (473)
Q Consensus       358 ~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~-i~iwd~~~  433 (473)
                      ..+....+++=+.+..+||.-| .-|.|+|-|+...+.  ...+.+|.+.|.+++.+-+|..+||+|..|+ |||||..+
T Consensus       134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~  213 (346)
T KOG2111|consen  134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED  213 (346)
T ss_pred             cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC
Confidence            1122233333233445666544 458999999876554  4678899999999999999999999999997 89999999


Q ss_pred             Cceeeccccc--CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          434 QKLKQDLPGH--ADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       434 ~~~~~~~~~h--~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +..+++++-.  ...|++++||||+.+||.+|.-|++.||.
T Consensus       214 g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  214 GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            9998877542  24799999999999999999999999984

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=4.7e-12  Score=110.67  Aligned_cols=199  Identities=19%  Similarity=0.279  Sum_probs=145.5

Q ss_pred             ccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhh
Q 011978          241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (473)
Q Consensus       241 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (473)
                      ..|..+.. .|+.|++|-.+|.+.+|....+..      |..+...++..+.... .                       
T Consensus       106 ~~I~gl~~-~dg~Litc~~sG~l~~~~~k~~d~------hss~l~~la~g~g~~~-~-----------------------  154 (412)
T KOG3881|consen  106 KSIKGLKL-ADGTLITCVSSGNLQVRHDKSGDL------HSSKLIKLATGPGLYD-V-----------------------  154 (412)
T ss_pred             ccccchhh-cCCEEEEEecCCcEEEEeccCCcc------ccccceeeecCCceee-e-----------------------
Confidence            34444433 367899999999999999875431      1111111211111000 0                       


Q ss_pred             hhcccCCCCceEEEecCC--ceEEEEeCCCCCCCeee------ecC--cccceeEEEECCC--CcEEEEEECCCcEEEEe
Q 011978          321 YNKIKGNAPERLVSGSDD--FTMFLWEPAVSKQPKTR------MTG--HQQLVNHVYFSPD--GQWVASASFDKSIKLWN  388 (473)
Q Consensus       321 ~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~------~~~--~~~~v~~v~~sp~--g~~lasgs~d~~v~lwd  388 (473)
                        ......+..+++|+..  ..+.+||+....+...-      ..+  -+-+++++.|-|.  ...||+++.-+.||+||
T Consensus       155 --r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YD  232 (412)
T KOG3881|consen  155 --RQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYD  232 (412)
T ss_pred             --ccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEec
Confidence              0001124567778888  78999998765322110      001  1246788999987  88999999999999999


Q ss_pred             CCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec-ccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          389 GTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       389 ~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      .+.+ +++..|.--..+++++...|+|+++++|..-|.+..||++.++.... +.|-.+.|.++..+|.+++||++|-|+
T Consensus       233 t~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDR  312 (412)
T KOG3881|consen  233 TRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDR  312 (412)
T ss_pred             CcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccce
Confidence            9866 46777777788999999999999999999999999999999988766 888889999999999999999999999


Q ss_pred             cEEecc
Q 011978          467 VLKLWM  472 (473)
Q Consensus       467 ~i~~w~  472 (473)
                      .+||++
T Consensus       313 yvRIhD  318 (412)
T KOG3881|consen  313 YVRIHD  318 (412)
T ss_pred             eEEEee
Confidence            999986

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=1.1e-10  Score=106.92  Aligned_cols=316  Identities=19%  Similarity=0.263  Sum_probs=184.7

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~  187 (473)
                      ..+.+..+++++|+++|.+ .+..++|++..+...+.....  ..+.++.|||-|.+|.+         |..-.     .
T Consensus        34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T---------~e~~~-----i   96 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLT---------WEPWA-----I   96 (566)
T ss_pred             CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEecc--ceeeeeeeccccccccc---------ccccc-----c
Confidence            3446778899999988775 556899999888754333222  26889999999987764         21100     0


Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEE
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWE  267 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd  267 (473)
                      ....+.                        ..-.+++|+..++.....+......-++..|+.|..+++--..+.+.+|+
T Consensus        97 ~~~~~~------------------------~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~  152 (566)
T KOG2315|consen   97 YGPKNA------------------------SNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYD  152 (566)
T ss_pred             ccCCCC------------------------CCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEe
Confidence            000000                        02456778877744333333222222678888887666555667899998


Q ss_pred             CCCCceeeeeeccCceEEEEEeccc-ceeeeccccCC-------CcccCCHHHHHHHHHh--hhhc-------ccCCCCc
Q 011978          268 TTQGKLIRELKGHGHWVNSLALSTE-YALRTGAFDHT-------GKQYSSPEEMKKAALE--RYNK-------IKGNAPE  330 (473)
Q Consensus       268 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~  330 (473)
                      ...-+.+ .-+.|...+..+.+++. .......+-..       .+.+..+.......+.  .+..       .......
T Consensus       153 ~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~  231 (566)
T KOG2315|consen  153 LGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA  231 (566)
T ss_pred             cCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence            8763322 22345666777777765 21111111110       0112111110000000  0000       0001111


Q ss_pred             eEE--EecCCc---------eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE--EECCCcEEEEeCCCCceEEE
Q 011978          331 RLV--SGSDDF---------TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS--ASFDKSIKLWNGTTGKFVAV  397 (473)
Q Consensus       331 ~l~--~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las--gs~d~~v~lwd~~~~~~~~~  397 (473)
                      .|+  +.--|.         ++++.+..  ...........+.|.++.|+|+|+-++.  |-.=..+.|||++ +.++..
T Consensus       232 LLvLastdVDktn~SYYGEq~Lyll~t~--g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~d  308 (566)
T KOG2315|consen  232 LLVLASTDVDKTNASYYGEQTLYLLATQ--GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFD  308 (566)
T ss_pred             EEEEEEEeecCCCccccccceEEEEEec--CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEe
Confidence            222  221122         45555543  1111122223578999999999976654  4455679999976 555555


Q ss_pred             eeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC------CCcE
Q 011978          398 FRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK------DRVL  468 (473)
Q Consensus       398 ~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~------D~~i  468 (473)
                      +  ..++-+++-|+|.|++|+.++-+   |.|-|||+.+.+.+..+..-.  -+-+.|+|||+++++++.      |+-+
T Consensus       309 f--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~  384 (566)
T KOG2315|consen  309 F--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGI  384 (566)
T ss_pred             C--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCe
Confidence            5  46788999999999999988864   689999999988877776533  345789999999998875      6778


Q ss_pred             Eecc
Q 011978          469 KLWM  472 (473)
Q Consensus       469 ~~w~  472 (473)
                      +||+
T Consensus       385 Kiwh  388 (566)
T KOG2315|consen  385 KIWH  388 (566)
T ss_pred             EEEE
Confidence            8885

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=9.7e-11  Score=101.56  Aligned_cols=296  Identities=20%  Similarity=0.288  Sum_probs=169.9

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEECCCC-CeEEEEecCCeEEEeeCCCC----c
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTG----K  183 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~~~~----~  183 (473)
                      .+.-++|++.-..+|++..|-+||+||-+...+ ..++ .....|.||+|-|.+ +.|+.|+. +-|.+|....-    +
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst~p-t~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r  177 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-TKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR  177 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCCCC-ceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc
Confidence            466789999766788999999999999776333 2332 335679999999965 45666665 56889975421    1


Q ss_pred             c---------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeC-CCcEEEEECCCCeEEEEecCccccEEEEEecCCC-
Q 011978          184 P---------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-  252 (473)
Q Consensus       184 ~---------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-  252 (473)
                      .         ......+| ..|+.+.|++     ++..+++++- |..|+|||..++.++-........++-+.|+||+ 
T Consensus       178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-----dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd  251 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNE-----DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD  251 (445)
T ss_pred             ccccccccchhheeCCCC-ceeeEEEEcC-----CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence            1         00112344 6788999876     5678888774 6789999999988776554445678889999998 


Q ss_pred             eEEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978          253 VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (473)
                      .++++.-|+..++|...+. ...+-.-+.+ .|....++|.......++......|+..             ..+..+..
T Consensus       252 ~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~-------------f~~~~~~~  317 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLT-------------FDGEDSVF  317 (445)
T ss_pred             EEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEe-------------ecCCCccc
Confidence            6889999999999954332 2222222333 6777777776543332222221111100             00000000


Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecC---cccceeEEEECCCCcEEEEEECCC--------cEEEEeCCCCceEEEe-e
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPDGQWVASASFDK--------SIKLWNGTTGKFVAVF-R  399 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~v~~sp~g~~lasgs~d~--------~v~lwd~~~~~~~~~~-~  399 (473)
                      .-.++.-..+.+-|+..    .....+   -.+.+.+++|.|.|.+||+.-..+        .|.+||.+..-.+... -
T Consensus       318 ~~~~~~k~~lliaDL~e----~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~c  393 (445)
T KOG2139|consen  318 LRPQSIKRVLLIADLQE----VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYC  393 (445)
T ss_pred             cCcccceeeeeeccchh----hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEec
Confidence            00011111111222110    000011   124578899999999999876543        3666776543322111 1


Q ss_pred             C--CccCEEEEEEec---CCCEEEEEeCCCcEEEEEC
Q 011978          400 G--HVGPVYQISWSA---DSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       400 ~--h~~~v~~v~~sp---~g~~l~s~s~Dg~i~iwd~  431 (473)
                      +  ....-..++|+|   +|.+|..+=.-|.+.-|++
T Consensus       394 g~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  394 GMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             ccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence            1  011133456665   4556666655666666654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=3.8e-12  Score=110.11  Aligned_cols=196  Identities=22%  Similarity=0.410  Sum_probs=133.3

Q ss_pred             cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEecCCC--eEEEeecCCeEEEEECCCC
Q 011978          195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG  271 (473)
Q Consensus       195 ~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~  271 (473)
                      .+..++|++.-+     .|+++..|-.|++||-.. ++...++ .....|+|++|.|.+  .++.|+. +.|.+|....-
T Consensus       100 dlr~~aWhqH~~-----~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~t  172 (445)
T KOG2139|consen  100 DLRGVAWHQHII-----AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT  172 (445)
T ss_pred             ceeeEeechhhh-----hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence            456788887332     588999999999999876 4433333 345689999998865  3555544 56888865321


Q ss_pred             ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978          272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ  351 (473)
Q Consensus       272 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  351 (473)
                      .....                                                       ...+....          ..
T Consensus       173 ln~~r-------------------------------------------------------~~~~~s~~----------~~  187 (445)
T KOG2139|consen  173 LNANR-------------------------------------------------------NIRMMSTH----------HL  187 (445)
T ss_pred             ccccc-------------------------------------------------------cccccccc----------ch
Confidence            00000                                                       00000000          00


Q ss_pred             CeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978          352 PKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD  430 (473)
Q Consensus       352 ~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd  430 (473)
                      ...+..+| ..|++++|.+||..+++++. |..|.|||..++..+....-.-+.++-+.|||||.+|..+.-|+..++|+
T Consensus       188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~  266 (445)
T KOG2139|consen  188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ  266 (445)
T ss_pred             hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence            11222344 57999999999999999986 56899999999987766544567889999999999999999999999996


Q ss_pred             CCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978          431 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       431 ~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      .....-.....-..+.|...+|+|+|++|.-+.
T Consensus       267 e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  267 ENQSWTKERWILGSGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             hcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence            544322222222345899999999999875443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.48  E-value=1.5e-10  Score=109.89  Aligned_cols=307  Identities=13%  Similarity=0.057  Sum_probs=187.4

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEE
Q 011978          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (473)
Q Consensus       120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i  199 (473)
                      +..++.++.++.+.-+|..+++.+....-..........  ++..++.++.+|.++.+|..+|+........  ..+.  
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~--  138 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVL--  138 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceee--
Confidence            667888889999999999999887765433321122222  4678888999999999999998865432111  1111  


Q ss_pred             EeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEE-----EEEecCCCeEEEeecCCeEEEEECCCCcee
Q 011978          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT-----CVKWGGDGVIYTGSQDCTIKVWETTQGKLI  274 (473)
Q Consensus       200 ~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  274 (473)
                       -.|..   ...+++.++.++.+..||..+++.+...........     +.... ++.++.+..++.+..+|.++|+.+
T Consensus       139 -~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       139 -SPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPL  213 (377)
T ss_pred             -cCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEe
Confidence             11211   234677778899999999999988776543321111     11111 357788888999999999998876


Q ss_pred             eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978          275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (473)
Q Consensus       275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  354 (473)
                      .+......        ..      ...     .   .     .+...........+.++.++.++.++.+|...++....
T Consensus       214 W~~~~~~~--------~g------~~~-----~---~-----~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~  266 (377)
T TIGR03300       214 WEQRVALP--------KG------RTE-----L---E-----RLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK  266 (377)
T ss_pred             eeeccccC--------CC------CCc-----h---h-----hhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence            54321100        00      000     0   0     00000000000134577778899999999865543221


Q ss_pred             eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc-CEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       355 ~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~-~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      ....   ......  .++..++.++.||.+..+|..+|+.+.......+ ...+...  .+..|++++.||.|+++|..+
T Consensus       267 ~~~~---~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t  339 (377)
T TIGR03300       267 RDAS---SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED  339 (377)
T ss_pred             eccC---CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence            1111   111111  2467788888999999999999987755432111 1122122  466888999999999999999


Q ss_pred             CceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          434 QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       434 ~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++.+..++.+...+..--...+ +.|+.++.||.|..|.
T Consensus       340 G~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       340 GSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAFR  377 (377)
T ss_pred             CCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEeC
Confidence            9988777655544433222333 4588999999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.4e-11  Score=116.93  Aligned_cols=164  Identities=24%  Similarity=0.232  Sum_probs=104.0

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeC---CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEE-EEecCC--e
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAG--E  173 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~---d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-s~~~dg--~  173 (473)
                      ....+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++... +........++.|+|||+.|+ +.+.+|  .
T Consensus       195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~  273 (433)
T PRK04922        195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPE  273 (433)
T ss_pred             CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence            34456667788999999999999998773   3479999998876432 333344456789999999876 445555  5


Q ss_pred             EEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC-CCc--EEEEECCCCeEEEEecCccccEEEEEecC
Q 011978          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGD--ARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (473)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  250 (473)
                      |++||+.+++..  .+..+........|+|     ++.+++..+. +|.  +.++|+.+++... +..+.......+|++
T Consensus       274 Iy~~d~~~g~~~--~lt~~~~~~~~~~~sp-----DG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~Sp  345 (433)
T PRK04922        274 IYVMDLGSRQLT--RLTNHFGIDTEPTWAP-----DGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSP  345 (433)
T ss_pred             EEEEECCCCCeE--ECccCCCCccceEECC-----CCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECC
Confidence            999999887643  2334444445566665     5566766553 444  5666766654332 211222344678898


Q ss_pred             CCe-EEEee-cCC--eEEEEECCCCc
Q 011978          251 DGV-IYTGS-QDC--TIKVWETTQGK  272 (473)
Q Consensus       251 ~~~-l~s~~-~d~--~i~~wd~~~~~  272 (473)
                      +|. ++..+ .++  .|.+||+.+++
T Consensus       346 DG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        346 DGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             CCCEEEEEECCCCceeEEEEECCCCC
Confidence            873 44332 222  57777766543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1.3e-11  Score=118.30  Aligned_cols=207  Identities=17%  Similarity=0.126  Sum_probs=127.4

Q ss_pred             CcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeec---CCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQ---DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (473)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (473)
                      ..+.++|... .....+..+...+.+.+|+|||. |+..+.   ...|.+||+.+++... +...........++|+.. 
T Consensus       176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~-  252 (427)
T PRK02889        176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR-  252 (427)
T ss_pred             cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC-
Confidence            4577777643 33334445667888999999983 544442   2469999998886533 222222333445554421 


Q ss_pred             eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE
Q 011978          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV  375 (473)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l  375 (473)
                                                        ..+++.+.++...+|...........+..+........|+|||+.|
T Consensus       253 ----------------------------------~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l  298 (427)
T PRK02889        253 ----------------------------------TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSI  298 (427)
T ss_pred             ----------------------------------EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEE
Confidence                                              1234556677666665433222334444455556678999999998


Q ss_pred             EEEEC-CCcEEEEe--CCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEEECCCCceeecccccCCCEEE
Q 011978          376 ASASF-DKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVWDIRTQKLKQDLPGHADEVFA  449 (473)
Q Consensus       376 asgs~-d~~v~lwd--~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~h~~~i~~  449 (473)
                      +..+. ++...+|.  ..+++..... .+.......+|||||++|+..+.++   .|++||+.+++... +..+ .....
T Consensus       299 ~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~  375 (427)
T PRK02889        299 YFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDES  375 (427)
T ss_pred             EEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccC
Confidence            87664 45666665  4444432222 1223344678999999999877654   59999998876543 3222 23457


Q ss_pred             EEEeeCCCEEEEEeCCC
Q 011978          450 VDWSPDGEKVASGGKDR  466 (473)
Q Consensus       450 l~~s~d~~~l~s~~~D~  466 (473)
                      ..|+|||+.|+.++.++
T Consensus       376 p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        376 PSFAPNGRYILYATQQG  392 (427)
T ss_pred             ceECCCCCEEEEEEecC
Confidence            89999999998877554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=6.3e-11  Score=114.21  Aligned_cols=204  Identities=15%  Similarity=0.095  Sum_probs=131.8

Q ss_pred             CcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee---cCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS---QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (473)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (473)
                      ..|.+||..... ...+..|...+.+.+|++||. |+..+   .+..|.+||+.+++.. .+......+....++|+.. 
T Consensus       182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~-  258 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR-  258 (435)
T ss_pred             eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC-
Confidence            478888875443 344556777899999999984 54433   3468999999887643 3333333344444554421 


Q ss_pred             eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce--EEEEeCCCCCCCeeeecCcccceeEEEECCCCc
Q 011978          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (473)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~  373 (473)
                                                        ..+++.+.++.  |++||....  ....+..+.......+|+|||+
T Consensus       259 ----------------------------------~la~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~  302 (435)
T PRK05137        259 ----------------------------------KVVMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGS  302 (435)
T ss_pred             ----------------------------------EEEEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCC
Confidence                                              12344455544  666776543  2344555555667789999999


Q ss_pred             EEEEEECC-C--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeecccccCCCE
Q 011978          374 WVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHADEV  447 (473)
Q Consensus       374 ~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~~~~~~~~~~~~h~~~i  447 (473)
                      .|+..+.. +  .|+++|...++..... .+.+.+....|||||++|+..+.+   ..|.+||+..+... .+.. ...+
T Consensus       303 ~i~f~s~~~g~~~Iy~~d~~g~~~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~  379 (435)
T PRK05137        303 QIVFESDRSGSPQLYVMNADGSNPRRIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLV  379 (435)
T ss_pred             EEEEEECCCCCCeEEEEECCCCCeEEee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCC
Confidence            99887743 3  5888898766544333 334556778999999999887654   35888888655432 2321 2246


Q ss_pred             EEEEEeeCCCEEEEEeCC
Q 011978          448 FAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       448 ~~l~~s~d~~~l~s~~~D  465 (473)
                      ....|+|||++|+..+.+
T Consensus       380 ~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        380 EGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             CCCeECCCCCEEEEEEcc
Confidence            678999999998876543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.43  E-value=5.1e-11  Score=118.41  Aligned_cols=253  Identities=19%  Similarity=0.248  Sum_probs=162.5

Q ss_pred             eeEEEcCCCCCEEEEEECCCC-CeEEEEecCCeEEEeeCCCCccc----c--ccCCCcCCcEEEEEeceeccCCCCceEE
Q 011978          142 PMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPS----G--NPLSGHKKWITGISWEPVHLNAPCRRFV  214 (473)
Q Consensus       142 ~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~~~~~~~----~--~~~~~~~~~v~~i~~~~~~~~~~~~~~~  214 (473)
                      .+..+..|...|..++.+++. .++++|+.||+|++||.+.-...    .  ....--...+..+...+     .+..|+
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-----~~~~~A 1114 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-----NGDQFA 1114 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-----CCCeEE
Confidence            344556678888888887755 89999999999999998642111    0  00111223344444332     456899


Q ss_pred             EeeCCCcEEEEECCCC--eEE-----EE--ecCccccEEEEEecCC--C-eEEEeecCCeEEEEECCCCceeeeeec--c
Q 011978          215 SASKDGDARIWDVSLR--KCV-----IC--LSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGKLIRELKG--H  280 (473)
Q Consensus       215 s~s~dg~i~iwd~~~~--~~~-----~~--~~~h~~~v~~~~~~~~--~-~l~s~~~d~~i~~wd~~~~~~~~~~~~--~  280 (473)
                      .++.||.|++.++...  +..     ..  .......|.+.++...  . .++.+..-+.|..||.++.....+++.  .
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence            9999999999998752  111     11  1122223444445422  2 566778888999999988766555433  3


Q ss_pred             CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc
Q 011978          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ  360 (473)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  360 (473)
                      .+.|.++++++.+                                    .-++.|...|.+.+||++.......-...+.
T Consensus      1195 hG~vTSi~idp~~------------------------------------~WlviGts~G~l~lWDLRF~~~i~sw~~P~~ 1238 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWC------------------------------------NWLVIGTSRGQLVLWDLRFRVPILSWEHPAR 1238 (1431)
T ss_pred             ccceeEEEecCCc------------------------------------eEEEEecCCceEEEEEeecCceeecccCccc
Confidence            4567777777653                                    2488999999999999876544443334455


Q ss_pred             cceeEEEECCCC---cEEEEEE--CCCcEEEEeCCCCceEEEeeCCc-------------------cCEEEEEEecCCCE
Q 011978          361 QLVNHVYFSPDG---QWVASAS--FDKSIKLWNGTTGKFVAVFRGHV-------------------GPVYQISWSADSRL  416 (473)
Q Consensus       361 ~~v~~v~~sp~g---~~lasgs--~d~~v~lwd~~~~~~~~~~~~h~-------------------~~v~~v~~sp~g~~  416 (473)
                      .+++.+..+|-.   ...++++  ..+.|.+|++.+|.+..++....                   -......+..-+.+
T Consensus      1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~ 1318 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGF 1318 (1431)
T ss_pred             CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCce
Confidence            778888887733   4555544  46789999999987666554321                   01122233334568


Q ss_pred             EEEEeCCCcEEEEECCCCc
Q 011978          417 LLSGSKDSTLKVWDIRTQK  435 (473)
Q Consensus       417 l~s~s~Dg~i~iwd~~~~~  435 (473)
                      +.+|+.|..|+.||....+
T Consensus      1319 ~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1319 LLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             eeecCCccceeeccCCCcc
Confidence            8899999999999987644

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.40  E-value=9.2e-11  Score=108.19  Aligned_cols=208  Identities=23%  Similarity=0.334  Sum_probs=143.8

Q ss_pred             CCCCCeEEEEeCCCeEEEEeCCCCceeEEEcC---CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978          117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG---HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK  193 (473)
Q Consensus       117 sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  193 (473)
                      .|-..++|....||.+|+||..+++....+..   -++...++.|.     |.....          ..+..  .+.   
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s----------~~k~~--~~~---   61 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYS----------PMKWL--SLE---   61 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccc----------hHHHH--hHH---
Confidence            34567899999999999999988765443321   12233344442     111110          00000  000   


Q ss_pred             CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--CccccEEEEEecCC-CeEEEeecCCeEEEEECCC
Q 011978          194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQ  270 (473)
Q Consensus       194 ~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~  270 (473)
                       ..       .....+...++-|...|.|.+++...++....+.  +|.+.|.++.++.+ +.|++++.|+.+..|+...
T Consensus        62 -~~-------~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~  133 (541)
T KOG4547|consen   62 -KA-------KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE  133 (541)
T ss_pred             -HH-------hhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence             00       0111233467888899999999999988877665  68999999998765 5799999999999999876


Q ss_pred             CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCC
Q 011978          271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (473)
Q Consensus       271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  350 (473)
                      .+.++.                                                                   |..    
T Consensus       134 ~~~~~~-------------------------------------------------------------------~~~----  142 (541)
T KOG4547|consen  134 KVIIRI-------------------------------------------------------------------WKE----  142 (541)
T ss_pred             ceeeee-------------------------------------------------------------------ecc----
Confidence            554432                                                                   221    


Q ss_pred             CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecC-----CCEEE-EEeCCC
Q 011978          351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD-----SRLLL-SGSKDS  424 (473)
Q Consensus       351 ~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-----g~~l~-s~s~Dg  424 (473)
                              ....+.+++++|||..+++++  +.|++||+++++.+..|.||.++|.+++|--+     |.++. +...+.
T Consensus       143 --------~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r  212 (541)
T KOG4547|consen  143 --------QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER  212 (541)
T ss_pred             --------CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence                    122467789999999999987  57999999999999999999999999999876     55554 445566


Q ss_pred             cEEEEECCC
Q 011978          425 TLKVWDIRT  433 (473)
Q Consensus       425 ~i~iwd~~~  433 (473)
                      -+.+|-+..
T Consensus       213 ~i~~w~v~~  221 (541)
T KOG4547|consen  213 GITVWVVEK  221 (541)
T ss_pred             ceeEEEEEc
Confidence            677886643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.39  E-value=2.8e-10  Score=109.78  Aligned_cols=231  Identities=22%  Similarity=0.282  Sum_probs=139.3

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCccccccCCCcCCcEEEEEeceecc
Q 011978          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (473)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~  206 (473)
                      ..|.++|..+..+ ..+..+...+.+..|+|||++|+.+...   ..|++||+.+++...  +..+...+..+.|+|   
T Consensus       170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~~~~~~~~~~~~sp---  243 (417)
T TIGR02800       170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--VASFPGMNGAPAFSP---  243 (417)
T ss_pred             ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--eecCCCCccceEECC---
Confidence            3678888764433 3444566678999999999999987654   479999998875432  223344455567766   


Q ss_pred             CCCCceEE-EeeCCC--cEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee-cCC--eEEEEECCCCceeeeeec
Q 011978          207 NAPCRRFV-SASKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDC--TIKVWETTQGKLIRELKG  279 (473)
Q Consensus       207 ~~~~~~~~-s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~--~i~~wd~~~~~~~~~~~~  279 (473)
                        ++..|+ +.+.++  .|.+||+.++... .+..+........|++++. |+..+ .++  .|.++|+.+++..     
T Consensus       244 --Dg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-----  315 (417)
T TIGR02800       244 --DGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-----  315 (417)
T ss_pred             --CCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----
Confidence              445554 444444  5888898876543 3333444445667888773 44333 333  3445554432211     


Q ss_pred             cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (473)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  359 (473)
                                                                                                 .+..+
T Consensus       316 ---------------------------------------------------------------------------~l~~~  320 (417)
T TIGR02800       316 ---------------------------------------------------------------------------RLTFR  320 (417)
T ss_pred             ---------------------------------------------------------------------------EeecC
Confidence                                                                                       00011


Q ss_pred             ccceeEEEECCCCcEEEEEECCC---cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEEECCC
Q 011978          360 QQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVWDIRT  433 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d~---~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iwd~~~  433 (473)
                      ......++|+|+|++|+.++.++   .|.+||+.++.... +... .......|+|||++|+..+.++   .+++.+.. 
T Consensus       321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-  397 (417)
T TIGR02800       321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-  397 (417)
T ss_pred             CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-
Confidence            12234578999999999988776   78899988765432 3222 2234568999999988877654   35555543 


Q ss_pred             CceeecccccCCCEEEEEE
Q 011978          434 QKLKQDLPGHADEVFAVDW  452 (473)
Q Consensus       434 ~~~~~~~~~h~~~i~~l~~  452 (473)
                      ++....+..+...+..++|
T Consensus       398 g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       398 GRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             CceeeECCCCCCCcCCCCC
Confidence            3444445444445555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.39  E-value=6.8e-10  Score=100.70  Aligned_cols=304  Identities=19%  Similarity=0.285  Sum_probs=185.2

Q ss_pred             ccEEEEEECCCCCeEEEEeC---------------CCeEEEEeCCCCceeEEEcCCCCC--EE-EEEECCCCCeEEEEec
Q 011978          109 EAVLSVAFSPDGRQLASGSG---------------DTTVRLWDLNTQTPMFKCTGHKNW--VL-CIAWSADGKHLVSGSK  170 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~---------------d~~i~iwd~~~~~~~~~~~~~~~~--v~-~l~~s~dg~~l~s~~~  170 (473)
                      ..|..+.|+|.+++|.+=+.               ++.+.+||+.++..++.+.+...+  .+ -+.|+-+.+++|-. .
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            35888999999999987543               335999999999988877665544  44 67889888877654 3


Q ss_pred             CCeEEEeeCCCCccccccCCCcC-CcEEEEEeceeccCCCCceEE-----EeeCCCcEEEEECCCCeEEEEecCccccEE
Q 011978          171 AGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFV-----SASKDGDARIWDVSLRKCVICLSGHTLAVT  244 (473)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~~-----s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~  244 (473)
                      ...++++++ ++.....+...-. ..|....|+|....   ..|+     ..+.++.+++|.+..+..+.+..-....=.
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~---~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~  226 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNH---DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV  226 (561)
T ss_pred             cCeEEEEec-CCccccCchhhccccceeeEEecCCCCC---ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence            457899987 4443222222222 44666677776422   2233     256778999999987665543221111112


Q ss_pred             EEEecCCCe--EEEe---e-------cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978          245 CVKWGGDGV--IYTG---S-------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (473)
Q Consensus       245 ~~~~~~~~~--l~s~---~-------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (473)
                      .+.|+..|.  ++-.   .       ....+++++++. +.++....-.++|..+++.|...                  
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~------------------  287 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSS------------------  287 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccCC------------------
Confidence            355666552  2111   1       124566666653 22222223355666666654311                  


Q ss_pred             HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC---CcEEEEeC
Q 011978          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNG  389 (473)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~  389 (473)
                                      .--+++|-.+-.+.++|++..    .+.......-+.+.|+|.+++++.++.|   |.+.+||.
T Consensus       288 ----------------~F~vi~g~~pa~~s~~~lr~N----l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~  347 (561)
T COG5354         288 ----------------RFAVISGYMPASVSVFDLRGN----LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP  347 (561)
T ss_pred             ----------------ceeEEecccccceeecccccc----eEEecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence                            001344455556666665432    2233334445668899999999998877   57999998


Q ss_pred             CCCce-EEEeeCCccCEEEEEEecCCCEEEEEeC------CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978          390 TTGKF-VAVFRGHVGPVYQISWSADSRLLLSGSK------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG  462 (473)
Q Consensus       390 ~~~~~-~~~~~~h~~~v~~v~~sp~g~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~  462 (473)
                      ..... +..+.+-.  ..-+.|+||++++.+.-.      |..|+|||+...+..        ..+.+.|.|.|++.-+.
T Consensus       348 ~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~tts  417 (561)
T COG5354         348 AGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTS  417 (561)
T ss_pred             CCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceee
Confidence            75543 33565433  345689999998776532      788999999764332        45667788877776655


Q ss_pred             eCCC
Q 011978          463 GKDR  466 (473)
Q Consensus       463 ~~D~  466 (473)
                      +.+.
T Consensus       418 Ss~~  421 (561)
T COG5354         418 SSCP  421 (561)
T ss_pred             ccCC
Confidence            5543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=4.3e-11  Score=109.70  Aligned_cols=235  Identities=17%  Similarity=0.242  Sum_probs=146.8

Q ss_pred             CCCCCEEEEEECCCCCeEE-EEecCCeEEEeeCCCCccccccCCCcC-CcEEEEEeceeccCCCCceEEEeeCCCcEEEE
Q 011978          148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (473)
Q Consensus       148 ~~~~~v~~l~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iw  225 (473)
                      .+....+.+..+|||++++ +|.+.-.|++||+.+-..   -+.-|. ..+.  .|.+.  +.+....+---.|++|-+.
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL---KFERhlDae~V--~feiL--sDD~SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL---KFERHLDAEVV--DFEIL--SDDYSKSVFLQNDRTIEFH  121 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEccccee---eeeecccccce--eEEEe--ccchhhheEeecCceeeeh
Confidence            4566678899999999875 567788999999875432   122222 2222  22221  1122233334445555443


Q ss_pred             ECCCCeEEEEecCccccEEEEEec-CCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCC
Q 011978          226 DVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG  304 (473)
Q Consensus       226 d~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  304 (473)
                      ..........++.   .-..++++ +..-|+.++....|+-+++++|+.+..+...                        
T Consensus       122 ak~G~hy~~RIP~---~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~------------------------  174 (703)
T KOG2321|consen  122 AKYGRHYRTRIPK---FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD------------------------  174 (703)
T ss_pred             hhcCeeeeeecCc---CCccccccCCCccEEEeecCcceEEEEccccccccccccc------------------------
Confidence            2211111111110   11223333 2334677777777877888877665433211                        


Q ss_pred             cccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcE
Q 011978          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI  384 (473)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v  384 (473)
                                                                             ...++++..++-..+||+|+.||.|
T Consensus       175 -------------------------------------------------------~~~lN~v~in~~hgLla~Gt~~g~V  199 (703)
T KOG2321|consen  175 -------------------------------------------------------SGELNVVSINEEHGLLACGTEDGVV  199 (703)
T ss_pred             -------------------------------------------------------cccceeeeecCccceEEecccCceE
Confidence                                                                   1346778888888899999999999


Q ss_pred             EEEeCCCCceEEEee------CCcc-----CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec-ccccCCCEEEEEE
Q 011978          385 KLWNGTTGKFVAVFR------GHVG-----PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDW  452 (473)
Q Consensus       385 ~lwd~~~~~~~~~~~------~h~~-----~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~  452 (473)
                      .+||.+....+..+.      .|.+     .|+++.|+.+|-.+++|..+|.|.|||+++.+.+.. -.+..-+|..+.|
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~  279 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW  279 (703)
T ss_pred             EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence            999998776555443      2333     499999999999999999999999999998776432 2233458999999


Q ss_pred             eeC--CCEEEEEeCCCcEEecc
Q 011978          453 SPD--GEKVASGGKDRVLKLWM  472 (473)
Q Consensus       453 s~d--~~~l~s~~~D~~i~~w~  472 (473)
                      .+.  ++.++|.+. ..++||+
T Consensus       280 ~~~~~q~~v~S~Dk-~~~kiWd  300 (703)
T KOG2321|consen  280 QDTDQQNKVVSMDK-RILKIWD  300 (703)
T ss_pred             cccCCCceEEecch-HHhhhcc
Confidence            766  344444433 5788885

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=1.1e-10  Score=98.58  Aligned_cols=153  Identities=27%  Similarity=0.448  Sum_probs=104.1

Q ss_pred             EEEEECCCCCeEEEEeC----------CCeEEEEeCCC-CceeEEEc-CCCCCEEEEEECCCCCeEEE--EecCCeEEEe
Q 011978          112 LSVAFSPDGRQLASGSG----------DTTVRLWDLNT-QTPMFKCT-GHKNWVLCIAWSADGKHLVS--GSKAGELQCW  177 (473)
Q Consensus       112 ~~~~~sp~~~~lat~s~----------d~~i~iwd~~~-~~~~~~~~-~~~~~v~~l~~s~dg~~l~s--~~~dg~i~iw  177 (473)
                      ..+.|+|+|++|+.-..          -+...+|-++. +.+...+. ...++|.+++|+|+|+.++.  |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35789999988764322          23455665532 22333332 23457999999999998765  4467899999


Q ss_pred             eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC---CCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-
Q 011978          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-  253 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-  253 (473)
                      |.+ ++...   .-+...++.+.|+|     .++++++++.   .|.+.+||.++.+.+.... | ..++.++|+|+|. 
T Consensus        89 d~~-~~~i~---~~~~~~~n~i~wsP-----~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~  157 (194)
T PF08662_consen   89 DVK-GKKIF---SFGTQPRNTISWSP-----DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRY  157 (194)
T ss_pred             cCc-ccEeE---eecCCCceEEEECC-----CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCE
Confidence            996 33322   22345678899988     4567887764   4679999999888887654 3 3478999999994 


Q ss_pred             EEEee------cCCeEEEEECCCCceeee
Q 011978          254 IYTGS------QDCTIKVWETTQGKLIRE  276 (473)
Q Consensus       254 l~s~~------~d~~i~~wd~~~~~~~~~  276 (473)
                      ++++.      .|+.++||+.. |+.+..
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EEEEEeccceeccccEEEEEec-CeEeEe
Confidence            55554      38899999974 555543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=4.6e-11  Score=116.97  Aligned_cols=267  Identities=21%  Similarity=0.304  Sum_probs=178.2

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE------EcCCC--CCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK------CTGHK--NWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~------~~~~~--~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      +++++++-.  ++|.+|++ -.|.+||+..+..+..      +..|.  +.+..     .+.+++++...+.+..=+...
T Consensus         9 ~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l-----~~~~~v~~~~~~~v~~~~~~~   80 (967)
T KOG0974|consen    9 PLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKL-----LSGKIVTCAKSDEVYVKEASN   80 (967)
T ss_pred             cccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhccccccccccccee-----ccceEEEEEeecceeecchhh
Confidence            444444433  56665543 4799999987654322      22341  11111     234556655544443322111


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE--EEEEe--cCCC-eEEE
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV--TCVKW--GGDG-VIYT  256 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v--~~~~~--~~~~-~l~s  256 (473)
                      .     ....-..++..-     .+.....+++....+..+.+||...+.............  .++-+  +.+. ++++
T Consensus        81 ~-----~~~~~s~wi~g~-----~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~  150 (967)
T KOG0974|consen   81 Q-----IIERFSDWIFGA-----KLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS  150 (967)
T ss_pred             h-----hhhhcccccccc-----chhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe
Confidence            1     111112233331     111234578888899999999987765544333222111  12222  3333 5888


Q ss_pred             eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      |+--+.|.+|+....+.-..+.+|...+..+.++.+                                    ...+++.|
T Consensus       151 gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d------------------------------------g~~i~s~S  194 (967)
T KOG0974|consen  151 GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD------------------------------------GRYIASVS  194 (967)
T ss_pred             ccccccEEEEeccccCCcceecccCCceEEEEEccC------------------------------------CcEEEEEe
Confidence            999999999997743333368899999888877654                                    34699999


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc-CEEEEEEecCCC
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQISWSADSR  415 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~-~v~~v~~sp~g~  415 (473)
                      +|.++++|++...+.......+|+..+..+.|+|+  .+++++.|-+.++|+.. ++.+.++.+|.+ .|..++..++..
T Consensus       195 dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~  271 (967)
T KOG0974|consen  195 DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVI  271 (967)
T ss_pred             cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCce
Confidence            99999999998877766677799999999999998  99999999999999654 555568888865 689999999999


Q ss_pred             EEEEEeCCCcEEEEECCC
Q 011978          416 LLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       416 ~l~s~s~Dg~i~iwd~~~  433 (473)
                      .+++++.|+.+++||...
T Consensus       272 ~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  272 IKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEeeccCcchhhhhhhc
Confidence            999999999999999754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=5e-10  Score=108.20  Aligned_cols=233  Identities=19%  Similarity=0.287  Sum_probs=142.0

Q ss_pred             eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccC
Q 011978          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (473)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  207 (473)
                      .|.++|..++.+ ..+..+...+.+..|+|||++|+..+.+   ..|.+||+.+++...  +......+....|+|    
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~~~~~~~Sp----  252 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGLNGAPAWSP----  252 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCCcCCeEECC----
Confidence            477778776543 3344566788999999999999877654   369999998876432  222223344566766    


Q ss_pred             CCCceEE-EeeCCC--cEEEEECCCCeEEEEecCccccEEEEEecCCCe-E-EEeecCC--eEEEEECCCCceeeeeecc
Q 011978          208 APCRRFV-SASKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDC--TIKVWETTQGKLIRELKGH  280 (473)
Q Consensus       208 ~~~~~~~-s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~--~i~~wd~~~~~~~~~~~~~  280 (473)
                       ++.+++ +.+.++  .|.+||+.+++.. .+..+........|++||. + +++..++  .|.++|+.+++..+ +.  
T Consensus       253 -DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt--  327 (430)
T PRK00178        253 -DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VT--  327 (430)
T ss_pred             -CCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee--
Confidence             455665 444455  5778898877643 3444544556678998873 4 3443333  35555554433110 00  


Q ss_pred             CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc
Q 011978          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ  360 (473)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  360 (473)
                                                                                                 ..+  
T Consensus       328 ---------------------------------------------------------------------------~~~--  330 (430)
T PRK00178        328 ---------------------------------------------------------------------------FVG--  330 (430)
T ss_pred             ---------------------------------------------------------------------------cCC--
Confidence                                                                                       000  


Q ss_pred             cceeEEEECCCCcEEEEEECC-C--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCC
Q 011978          361 QLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD-S--TLKVWDIRTQ  434 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D-g--~i~iwd~~~~  434 (473)
                      ......+|+|||++|+..+.+ +  .|.+||+.+++.......  .......|+|||++++..+.+ |  .++++++.. 
T Consensus       331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-  407 (430)
T PRK00178        331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-  407 (430)
T ss_pred             CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-
Confidence            011235799999999887653 3  478899988765332222  222356899999998877654 2  467777754 


Q ss_pred             ceeecccccCCCEEEEEEeeC
Q 011978          435 KLKQDLPGHADEVFAVDWSPD  455 (473)
Q Consensus       435 ~~~~~~~~h~~~i~~l~~s~d  455 (473)
                      ...+.+..+.+.+...+|+|-
T Consensus       408 ~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        408 RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CceEECcCCCCCcCCCccCCC
Confidence            333455555556777888863

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.37  E-value=4.7e-11  Score=110.09  Aligned_cols=202  Identities=20%  Similarity=0.274  Sum_probs=147.3

Q ss_pred             eEEEeecCCeEEEEECCCCceeeeeeccCc---eEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGH---WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      +++....||.+++||..+++....+....+   ...+..+.    +           +.....++...+..... .....
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~----L-----------~~~~s~~k~~~~~~~~~-~s~~t   70 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG----L-----------SADYSPMKWLSLEKAKK-ASLDT   70 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE----E-----------EeccchHHHHhHHHHhh-ccCCc
Confidence            577788999999999999887766543211   11111111    0           00001111111111111 11223


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeee-cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v  408 (473)
                      ..++-|...|.+.+++...++...+.. .+|.+.|+++.++.+-..|.+++.|..+..|+...++.++.++.....+.++
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl  150 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL  150 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence            457788889999999976554433333 5789999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeC-----CCEEE-EEeCCCcEEecc
Q 011978          409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD-----GEKVA-SGGKDRVLKLWM  472 (473)
Q Consensus       409 ~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d-----~~~l~-s~~~D~~i~~w~  472 (473)
                      +.+|||..|+++|  +.|++||+.+++...++.||.+.|.++.|..+     |+++. +...+.-+.+|.
T Consensus       151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  151 CISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             EEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            9999999999887  57999999999999999999999999999887     66654 444556666663

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=6.3e-10  Score=107.16  Aligned_cols=233  Identities=18%  Similarity=0.171  Sum_probs=129.6

Q ss_pred             eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC-C--eEEEeeCCCCccccccCCCcCCcEEEEEeceeccC
Q 011978          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (473)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  207 (473)
                      .+.++|...... ..+..+...+.+..|||||+.|+..+.+ +  .|++||+.+++...  +.                 
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt-----------------  258 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--VT-----------------  258 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ec-----------------
Confidence            567778765443 2344556778899999999999876543 2  47777776553210  00                 


Q ss_pred             CCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-E-EEeecCCe--EEEEECCCCceeeeeeccCce
Q 011978          208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCT--IKVWETTQGKLIRELKGHGHW  283 (473)
Q Consensus       208 ~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~  283 (473)
                                                 .+.+   ......|++||. | ++.+.++.  |.++|+.+++.. .+..+...
T Consensus       259 ---------------------------~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~  307 (448)
T PRK04792        259 ---------------------------SFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAI  307 (448)
T ss_pred             ---------------------------CCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCC
Confidence                                       0001   112346777763 3 34555554  777787766543 33322222


Q ss_pred             EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc--eEEEEeCCCCCCCeeeecCccc
Q 011978          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF--TMFLWEPAVSKQPKTRMTGHQQ  361 (473)
Q Consensus       284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~  361 (473)
                      .....++++..                                   ..+++...++  .++++|.....  ..++.....
T Consensus       308 ~~~p~wSpDG~-----------------------------------~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g~  350 (448)
T PRK04792        308 DTEPSWHPDGK-----------------------------------SLIFTSERGGKPQIYRVNLASGK--VSRLTFEGE  350 (448)
T ss_pred             ccceEECCCCC-----------------------------------EEEEEECCCCCceEEEEECCCCC--EEEEecCCC
Confidence            33334443321                                   1122332233  45555654332  222221222


Q ss_pred             ceeEEEECCCCcEEEEEECC-C--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCc
Q 011978          362 LVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD-S--TLKVWDIRTQK  435 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D-g--~i~iwd~~~~~  435 (473)
                      .....+|+|||++|+..+.+ +  .|.++|+.+++.......  .......|+|||++|+..+.+ +  .+++++.. ++
T Consensus       351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~  427 (448)
T PRK04792        351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GR  427 (448)
T ss_pred             CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence            23457899999999877653 3  455678877765332222  122345799999988776543 3  36777774 55


Q ss_pred             eeecccccCCCEEEEEEee
Q 011978          436 LKQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       436 ~~~~~~~h~~~i~~l~~s~  454 (473)
                      ....+..+.+.+...+|||
T Consensus       428 ~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        428 FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             ceEECcCCCCCcCCCccCC
Confidence            5566666666677888887

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1e-09  Score=100.69  Aligned_cols=297  Identities=18%  Similarity=0.233  Sum_probs=172.2

Q ss_pred             cEEEEEECCCCCeEEEE-----eCC-----CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          110 AVLSVAFSPDGRQLASG-----SGD-----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~-----s~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      .+.++.|+|-|.+|.|=     ..+     ..+++|+++++.....+......-++..|+.|..+ ++--..+.+++|++
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~  153 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDL  153 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEec
Confidence            67889999999988752     223     35779999985544333322222258899988653 33333578999998


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCceEE-----EeeCCCcEEEEECCCCeEEE--EecCc-cccEEEEEecCC
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-----SASKDGDARIWDVSLRKCVI--CLSGH-TLAVTCVKWGGD  251 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~-----s~s~dg~i~iwd~~~~~~~~--~~~~h-~~~v~~~~~~~~  251 (473)
                      .+.+....  .-|...|+...++|....   ..++     ..|.-+.++||.......-.  ..++. ...-..+.|+.-
T Consensus       154 ~~f~~~~~--kl~~~~i~~f~lSpgp~~---~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~  228 (566)
T KOG2315|consen  154 GSFKTIQH--KLSVSGITMLSLSPGPEP---PFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKL  228 (566)
T ss_pred             CCccceee--eeeccceeeEEecCCCCC---ceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccC
Confidence            77543322  224556777777764111   1222     34666789999876221110  00000 011123557654


Q ss_pred             C--eEEEe--ecCC---------eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          252 G--VIYTG--SQDC---------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       252 ~--~l~s~--~~d~---------~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      |  +|+.+  .-|.         ++++.+.......-.+ ...++|.++.++++..-.                      
T Consensus       229 gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF----------------------  285 (566)
T KOG2315|consen  229 GTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREF----------------------  285 (566)
T ss_pred             CceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEE----------------------
Confidence            4  33333  2332         4556555522221111 125567777776653110                      


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC---CcEEEEeCCCCceE
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFV  395 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~~~~~  395 (473)
                                  -++-|-.--.+-++|++.  .  ..+.-..+.-+++-|+|.|++|+.++.+   |.|.+||..+.+++
T Consensus       286 ------------~VvyGfMPAkvtifnlr~--~--~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  286 ------------AVVYGFMPAKVTIFNLRG--K--PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             ------------EEEEecccceEEEEcCCC--C--EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence                        022233334555666432  1  1122223455788999999999998875   78999999998888


Q ss_pred             EEeeCCccCEEEEEEecCCCEEEEEeC------CCcEEEEECCCCceeecccccCCCEEEEEEeeC
Q 011978          396 AVFRGHVGPVYQISWSADSRLLLSGSK------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD  455 (473)
Q Consensus       396 ~~~~~h~~~v~~v~~sp~g~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d  455 (473)
                      ..+..-.  -+-+.|+|||.+++++..      |+.++||+.....+-.... . .+.+.+.|-|-
T Consensus       350 ~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f-~-sEL~qv~W~P~  411 (566)
T KOG2315|consen  350 AKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF-K-SELLQVEWRPF  411 (566)
T ss_pred             cccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhh-h-HhHhheeeeec
Confidence            8887543  355889999999998865      7889999986543322111 1 14677777654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.35  E-value=1.5e-10  Score=99.81  Aligned_cols=247  Identities=17%  Similarity=0.252  Sum_probs=166.9

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeC-CCCceeEEE-cCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL-NTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~-~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw  177 (473)
                      +...++||.+.|++...-|...-+++.+.|.++|||-- +.++--... ..-..+++++.+.++...|+.|-..|++.-+
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            34567899999999999999999999999999999943 222211111 1224578999999999999999999999888


Q ss_pred             eCCCC---ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcccc--EEEEEecCCC
Q 011978          178 DPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA--VTCVKWGGDG  252 (473)
Q Consensus       178 d~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~~~~  252 (473)
                      .....   .........|...+.++-|.-     ....+++.+.|..+.--=.+.+..+-   ++...  .+++.+.-. 
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-----~~e~V~s~~~dk~~~~hc~e~~~~lg---~Y~~~~~~t~~~~d~~-  166 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-----THEWVLSTGKDKQFAWHCTESGNRLG---GYNFETPASALQFDAL-  166 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecC-----CceeEEEeccccceEEEeeccCCccc---ceEeeccCCCCceeeE-
Confidence            65321   111223456788888877653     34577777777655432222221110   00000  001111101 


Q ss_pred             eEEEeecCCeEEEEEC--CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978          253 VIYTGSQDCTIKVWET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (473)
                      ..+.|...|.|..-.+  ..-..+.++++|...+.++.+.+.                                    +.
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------------------------------------~~  210 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------------------------------------QR  210 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC------------------------------------Cc
Confidence            2334545555544332  333566778888888888877653                                    34


Q ss_pred             eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~  391 (473)
                      .+.+|..|..+.+||+.........+.+|...|..+..-+.-+.+.+++.||.|.+||...
T Consensus       211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            6899999999999999877777778889999999998888889999999999999999754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.35  E-value=1.4e-11  Score=115.96  Aligned_cols=285  Identities=24%  Similarity=0.329  Sum_probs=185.9

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-CceeEEEcCC--CCCEEEEEECCCC--CeEEEEecCCeEEEeeCCC-
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGH--KNWVLCIAWSADG--KHLVSGSKAGELQCWDPQT-  181 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-~~~~~~~~~~--~~~v~~l~~s~dg--~~l~s~~~dg~i~iwd~~~-  181 (473)
                      .+++.++.++|.|+-+|.++.-|.. +-|+.. ..+..-+ .|  .-.|-.+.|+|..  .+-++......-.+|++.. 
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            3567889999999999998876643 445432 2222211 12  2236667787643  3444444455666888753 


Q ss_pred             -CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe-EEEEecCccccEEEEEecC-CCeEEEee
Q 011978          182 -GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKWGG-DGVIYTGS  258 (473)
Q Consensus       182 -~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~-~~~l~s~~  258 (473)
                       .+.+...+.+|...|+.+.|+|.+.    ..+++++.|-.+..||++... .++....-..+-+.+.|+- ++-+++.+
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~p----dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHP----DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCC----cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence             3344556789999999999998654    479999999999999998754 3344433344556678874 45677778


Q ss_pred             cCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          259 QDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       259 ~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      ..+.|++||.+.| ..+..+++|...|+.+++...                                   ....+.+++.
T Consensus       178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~-----------------------------------~~s~~~s~~~  222 (1081)
T KOG0309|consen  178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRF-----------------------------------KYSEIMSSSN  222 (1081)
T ss_pred             cCCceEEEeccCCCcceEEecccceeeehHHHhhh-----------------------------------hhhhhcccCC
Confidence            8889999999876 455667777666666554321                                   1124778899


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc--EEEEEECCCcEEEE---------eCCC-CceEEEeeCCccCE
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ--WVASASFDKSIKLW---------NGTT-GKFVAVFRGHVGPV  405 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~--~lasgs~d~~v~lw---------d~~~-~~~~~~~~~h~~~v  405 (473)
                      |++++.|+-............-...|..-.+-|-|.  ++.-.-.+..+.++         +..+ .+.++.|.||...|
T Consensus       223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V  302 (1081)
T KOG0309|consen  223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV  302 (1081)
T ss_pred             CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence            999999997655444333333334455556666433  22222222234343         3332 35789999999988


Q ss_pred             EEEEEecC----------CCEEEEEeCCCcEEEEECCC
Q 011978          406 YQISWSAD----------SRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       406 ~~v~~sp~----------g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      ...-|...          .-.|++-|.|.++++|-+..
T Consensus       303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            87777532          12699999999999998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.35  E-value=3.4e-10  Score=95.57  Aligned_cols=223  Identities=20%  Similarity=0.318  Sum_probs=145.2

Q ss_pred             EEEeeCCCcEEEEECCCCeEEEEecCcc---cc---EEEEEecCCC-eEEEeecCCeEEEEECCCCcee--eeeeccCce
Q 011978          213 FVSASKDGDARIWDVSLRKCVICLSGHT---LA---VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI--RELKGHGHW  283 (473)
Q Consensus       213 ~~s~s~dg~i~iwd~~~~~~~~~~~~h~---~~---v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~  283 (473)
                      ++-+-..|.|.++..........+.+-.   ..   ..++.|+..+ .++++..+|.+.+-+.....+.  +.++.|+-.
T Consensus        88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E  167 (339)
T KOG0280|consen   88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE  167 (339)
T ss_pred             eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence            4445567778887665444333333321   11   2356676655 4888888888885544433333  356677665


Q ss_pred             EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe-eeecCcccc
Q 011978          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMTGHQQL  362 (473)
Q Consensus       284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~  362 (473)
                      .....++.                                   ..++.+.+|++|+.+..||.+..+... ....-|...
T Consensus       168 ~Wta~f~~-----------------------------------~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G  212 (339)
T KOG0280|consen  168 AWTAKFSD-----------------------------------KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG  212 (339)
T ss_pred             eeeeeccc-----------------------------------CCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence            55554432                                   235689999999999999988544322 224457778


Q ss_pred             eeEEEECC-CCcEEEEEECCCcEEEEeCCC-CceEEEeeCCccCEEEEEEecCC--CEEEEEeCCCcEEEEECCCCc---
Q 011978          363 VNHVYFSP-DGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQISWSADS--RLLLSGSKDSTLKVWDIRTQK---  435 (473)
Q Consensus       363 v~~v~~sp-~g~~lasgs~d~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~g--~~l~s~s~Dg~i~iwd~~~~~---  435 (473)
                      |.+|.-+| .+.+|++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.-  ..|+++-..| .+|-++..+.   
T Consensus       213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~  290 (339)
T KOG0280|consen  213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEF  290 (339)
T ss_pred             eEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccch
Confidence            88888886 688999999999999999984 55554432 34789999999953  3454444444 6777775432   


Q ss_pred             --eeecccccCCCEEEEEEeeCCCEEEEEe-CCCcEE-ecc
Q 011978          436 --LKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLK-LWM  472 (473)
Q Consensus       436 --~~~~~~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~-~w~  472 (473)
                        .......|.+-.+.-+|......|||++ .|+.++ +|.
T Consensus       291 ~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  291 QIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             heeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence              2344567777778888854445788865 677755 774

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=3.5e-11  Score=123.59  Aligned_cols=228  Identities=16%  Similarity=0.270  Sum_probs=149.8

Q ss_pred             cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEE
Q 011978          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD  226 (473)
Q Consensus       147 ~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd  226 (473)
                      +.+-..|.++.=+|-..+-++|+.||.+++|.+..+..+..........|+.+.|+.     .++.|..+..||.+.+|.
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-----qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-----QGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-----cCCceeeeccCCceeecc
Confidence            344566888888888889999999999999998776654433333335566655443     456788888888888888


Q ss_pred             CCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcc
Q 011978          227 VSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (473)
Q Consensus       227 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  306 (473)
                      +. .+.......|....+...|-. ..+++++                                                
T Consensus      2280 ~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag------------------------------------------------ 2309 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG-SLLATAG------------------------------------------------ 2309 (2439)
T ss_pred             cC-CcceeccccCCccccceeeee-hhhhccc------------------------------------------------
Confidence            76 333334445555544444433 1222221                                                


Q ss_pred             cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEE
Q 011978          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (473)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l  386 (473)
                                                 ..++++.+.+||.............|...++++++-|..++|++|+.+|.|++
T Consensus      2310 ---------------------------~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2310 ---------------------------RSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred             ---------------------------cCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence                                       01234445555533222222223678888999999999999999999999999


Q ss_pred             EeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc---cCCC--E--EEEEEeeCCCEE
Q 011978          387 WNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG---HADE--V--FAVDWSPDGEKV  459 (473)
Q Consensus       387 wd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---h~~~--i--~~l~~s~d~~~l  459 (473)
                      ||++..++.+.++.         +. ...++++|+..|.++||++..-..+.++++   |.+-  .  ..+-..+ ++.|
T Consensus      2363 ~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~-~nri 2431 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQ-CNRI 2431 (2439)
T ss_pred             eehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeecc-CceE
Confidence            99998887766654         33 456899999999999999987666655543   1110  0  1222222 4567


Q ss_pred             EEEeCCCc
Q 011978          460 ASGGKDRV  467 (473)
Q Consensus       460 ~s~~~D~~  467 (473)
                      .+++.|++
T Consensus      2432 fsCgad~~ 2439 (2439)
T KOG1064|consen 2432 FSCGADGT 2439 (2439)
T ss_pred             EEecCCCC
Confidence            78888764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=6.1e-09  Score=95.54  Aligned_cols=316  Identities=17%  Similarity=0.202  Sum_probs=176.1

Q ss_pred             EEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec----------C-CeEEEeeCC
Q 011978          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK----------A-GELQCWDPQ  180 (473)
Q Consensus       112 ~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~----------d-g~i~iwd~~  180 (473)
                      +-+.|||-|.+|+|--. .-|.+|--++-..+..+ .|. .|.-+.|||+.++|++=+.          + ..+.|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEec-cceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            45799999999998644 34888965544333333 344 4888999999999998552          1 469999999


Q ss_pred             CCccccccCC--CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEE--
Q 011978          181 TGKPSGNPLS--GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT--  256 (473)
Q Consensus       181 ~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s--  256 (473)
                      +|........  +....-.-..|+.     +..+++ .-...+|.|++......+-.-.-.-..|..-.|+|.+.+++  
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~-----DdKy~A-rm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw  364 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSH-----DDKYFA-RMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW  364 (698)
T ss_pred             ccchhcceeccCCCccccceEEecc-----CCceeE-EeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence            9975432111  1110011123332     334444 33447788998766332211111223456667888764432  


Q ss_pred             -eecC---CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          257 -GSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       257 -~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                       -..+   .++.+..+.+++.+++...+...-..+.+..+....+...+...+.                        . 
T Consensus       365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~------------------------~-  419 (698)
T KOG2314|consen  365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKS------------------------K-  419 (698)
T ss_pred             cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccc------------------------c-
Confidence             1111   3455666666666655443332222222222222111111100000                        0 


Q ss_pred             EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC---CcEEEEeCCC----CceEEEeeCCccCE
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTT----GKFVAVFRGHVGPV  405 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~----~~~~~~~~~h~~~v  405 (473)
                       ..+.=..+-|+.++....+.... .-...|...+|-|.|..+++-+..   .++.+|-.++    .+++..+..  -..
T Consensus       420 -~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~  495 (698)
T KOG2314|consen  420 -VKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFA  495 (698)
T ss_pred             -ccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--ccc
Confidence             00111123444443332222221 234567889999999988876543   4788887763    223344432  356


Q ss_pred             EEEEEecCCCEEEEE---eCCCcEEEEECCCCceee-cccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          406 YQISWSADSRLLLSG---SKDSTLKVWDIRTQKLKQ-DLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       406 ~~v~~sp~g~~l~s~---s~Dg~i~iwd~~~~~~~~-~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      +.|.|+|.|++++.+   |..|.+..+|..-..... ....|. ..+.+.|.|.|+|+++++.-.
T Consensus       496 N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  496 NTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             ceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence            789999999998875   457889999987422222 222343 457789999999999988644

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=2.8e-09  Score=101.82  Aligned_cols=241  Identities=15%  Similarity=0.100  Sum_probs=136.0

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEE---EEecC--CeEEEeeCCCCccccccCCCcCCcEEEEEecee
Q 011978          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV---SGSKA--GELQCWDPQTGKPSGNPLSGHKKWITGISWEPV  204 (473)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~---s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  204 (473)
                      ..|.+.|..++.+. .++.....+.+-.|||||+.++   +...+  ..|.+.++.+++...  +...........|+| 
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~p~wSP-  240 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLMPTFSP-  240 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccceEECC-
Confidence            35777777665443 3444455567889999998632   33333  357778887775322  222233334456666 


Q ss_pred             ccCCCCceEEEeeC-CC----cEEEEECCCC---eEEEEecCccccEEEEEecCCCe-EE-EeecCCeEEEEECCCCcee
Q 011978          205 HLNAPCRRFVSASK-DG----DARIWDVSLR---KCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLI  274 (473)
Q Consensus       205 ~~~~~~~~~~s~s~-dg----~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~~~~~~  274 (473)
                          ++.+++..+. +|    .+.+|++..+   .......++.......+|++||. |+ +...+|...+|.+.-.   
T Consensus       241 ----DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~---  313 (428)
T PRK01029        241 ----RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID---  313 (428)
T ss_pred             ----CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc---
Confidence                5666665442 22    3444676542   22222223223345678898874 44 3334554444422100   


Q ss_pred             eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978          275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (473)
Q Consensus       275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  354 (473)
                                                                                               .......
T Consensus       314 -------------------------------------------------------------------------~~g~~~~  320 (428)
T PRK01029        314 -------------------------------------------------------------------------PEGQSPR  320 (428)
T ss_pred             -------------------------------------------------------------------------ccccceE
Confidence                                                                                     0000001


Q ss_pred             eecCcccceeEEEECCCCcEEEEEECC---CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeC---CCcEEE
Q 011978          355 RMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK---DSTLKV  428 (473)
Q Consensus       355 ~~~~~~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~---Dg~i~i  428 (473)
                      .+..+...+...+|||||+.|+..+.+   ..|.+||+.+++...... ....+....|+|||++|+..+.   +..|++
T Consensus       321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~  399 (428)
T PRK01029        321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYL  399 (428)
T ss_pred             EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence            111112234567899999999877653   368999999887654433 2345678999999998875443   346888


Q ss_pred             EECCCCceeecccccCCCEEEEEEeeCC
Q 011978          429 WDIRTQKLKQDLPGHADEVFAVDWSPDG  456 (473)
Q Consensus       429 wd~~~~~~~~~~~~h~~~i~~l~~s~d~  456 (473)
                      +|+..++..... .....+...+|+|-.
T Consensus       400 vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        400 ISLITKKTRKIV-IGSGEKRFPSWGAFP  426 (428)
T ss_pred             EECCCCCEEEee-cCCCcccCceecCCC
Confidence            999877654332 234456677888753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.27  E-value=6e-09  Score=98.93  Aligned_cols=260  Identities=15%  Similarity=0.106  Sum_probs=157.4

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEE-EEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEE
Q 011978          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC-IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT  197 (473)
Q Consensus       119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  197 (473)
                      ++..++.++.++.+..+|..+++.+....... .+.+ ...  .+..++.++.+|.++.||.++|+....... ......
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~  179 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR-VTPALT  179 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc-CCCcee
Confidence            46778888899999999999988776544222 2221 111  245777888899999999999875432111 000000


Q ss_pred             EE-EeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc-c---c------cEE-EEEecCCCeEEEeecCCeEEE
Q 011978          198 GI-SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-T---L------AVT-CVKWGGDGVIYTGSQDCTIKV  265 (473)
Q Consensus       198 ~i-~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h-~---~------~v~-~~~~~~~~~l~s~~~d~~i~~  265 (473)
                      .. .-.|..   ....++.+..++.+..+|..+++.+....-. .   .      .+. +..+ .++.++.++.+|.+..
T Consensus       180 ~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a  255 (377)
T TIGR03300       180 LRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAA  255 (377)
T ss_pred             ecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEE
Confidence            00 001111   1235677888899999999988776543210 0   0      010 1111 2567888899999999


Q ss_pred             EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (473)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  345 (473)
                      +|..+|+.+.......  .....                                      .....++.++.++.+..+|
T Consensus       256 ~d~~tG~~~W~~~~~~--~~~p~--------------------------------------~~~~~vyv~~~~G~l~~~d  295 (377)
T TIGR03300       256 LDLRSGRVLWKRDASS--YQGPA--------------------------------------VDDNRLYVTDADGVVVALD  295 (377)
T ss_pred             EECCCCcEEEeeccCC--ccCce--------------------------------------EeCCEEEEECCCCeEEEEE
Confidence            9999998765443110  00000                                      0134577778899999998


Q ss_pred             CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc
Q 011978          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST  425 (473)
Q Consensus       346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~  425 (473)
                      ....+..............+...  .+..|++++.+|.++++|..+|+.+..++.+...+..--...++ .|+.++.||.
T Consensus       296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~  372 (377)
T TIGR03300       296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGD  372 (377)
T ss_pred             CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCce
Confidence            76543222110100111111122  46788999999999999999999998887665443332222233 5778889999


Q ss_pred             EEEE
Q 011978          426 LKVW  429 (473)
Q Consensus       426 i~iw  429 (473)
                      |+.|
T Consensus       373 l~~~  376 (377)
T TIGR03300       373 LYAF  376 (377)
T ss_pred             EEEe
Confidence            8875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=3.8e-09  Score=102.11  Aligned_cols=162  Identities=23%  Similarity=0.224  Sum_probs=97.9

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCC---CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEE-EecCC--eE
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAG--EL  174 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s-~~~dg--~i  174 (473)
                      ...+..+...+...+|+|||++|+..+.+   ..|.+||+.++.... +....+.+....|+|||+.|+. .+.+|  .|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence            34455677889999999999999877643   468999998875432 3333344567899999998874 44454  68


Q ss_pred             EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC-CC--cEEEEECCCCeEEEEecCccccEEEEEecCC
Q 011978          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGD  251 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  251 (473)
                      ++||+.+++..  .+..+........|+|     ++..++..+. ++  .|.++|+.+++....... ........|+++
T Consensus       270 y~~d~~~~~~~--~lt~~~~~~~~~~~sp-----Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spd  341 (430)
T PRK00178        270 YVMDLASRQLS--RVTNHPAIDTEPFWGK-----DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSAD  341 (430)
T ss_pred             EEEECCCCCeE--EcccCCCCcCCeEECC-----CCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCC
Confidence            88899877543  2333444444556665     4555654443 33  566777776654322111 122234567877


Q ss_pred             Ce-EEEee-cCC--eEEEEECCCC
Q 011978          252 GV-IYTGS-QDC--TIKVWETTQG  271 (473)
Q Consensus       252 ~~-l~s~~-~d~--~i~~wd~~~~  271 (473)
                      +. ++..+ .++  .|.+||+.++
T Consensus       342 g~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        342 GKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             CCEEEEEEccCCceEEEEEECCCC
Confidence            63 33322 233  3555665544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.26  E-value=2.2e-09  Score=103.57  Aligned_cols=205  Identities=18%  Similarity=0.172  Sum_probs=128.1

Q ss_pred             CcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecC---CeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (473)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (473)
                      ..|.++|..... ...+..+...+.+..|++||. ++.+..+   ..|++||+.+++.... ..+...+..+.++++.. 
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~-  246 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGS-  246 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCC-
Confidence            357777775433 233444556688889999984 4444332   5799999988754332 22222233344444321 


Q ss_pred             eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC--ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc
Q 011978          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD--FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (473)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~  373 (473)
                                                        ..+++.+.+  ..+++|++....  ...+..+.......+|+|||+
T Consensus       247 ----------------------------------~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~  290 (417)
T TIGR02800       247 ----------------------------------KLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGK  290 (417)
T ss_pred             ----------------------------------EEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCC
Confidence                                              122333333  357888865432  233334444455678999999


Q ss_pred             EEEEEECC-C--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEEECCCCceeecccccCCCE
Q 011978          374 WVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVWDIRTQKLKQDLPGHADEV  447 (473)
Q Consensus       374 ~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~h~~~i  447 (473)
                      .|+..+.. +  .|+++|..+++.. .+..+...+..+.|+|+|++|+.++.++   .|.+||+.++... .+... ...
T Consensus       291 ~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~  367 (417)
T TIGR02800       291 SIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLD  367 (417)
T ss_pred             EEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCC
Confidence            98877653 3  5888888777643 3333455677889999999999888776   7899999875442 23222 223


Q ss_pred             EEEEEeeCCCEEEEEeCCC
Q 011978          448 FAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       448 ~~l~~s~d~~~l~s~~~D~  466 (473)
                      ....|+|||++|+.++.++
T Consensus       368 ~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       368 ESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCceECCCCCEEEEEEeCC
Confidence            4568999999998877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=3.4e-11  Score=109.93  Aligned_cols=215  Identities=22%  Similarity=0.361  Sum_probs=150.7

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-------CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~  175 (473)
                      .+.||+..|..++--.+..-+++++.|++|++|.++.       ..+.+..+.|+.+|.++.|-.+-++++++  ||.|.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH  807 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH  807 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence            4679999999988777778899999999999999853       23566778999999999999888887765  78999


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEE
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY  255 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~  255 (473)
                      +||.--|+...+..           |.|                        +.        +-...|.|+.--....++
T Consensus       808 lWDPFigr~Laq~~-----------dap------------------------k~--------~a~~~ikcl~nv~~~ili  844 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQME-----------DAP------------------------KE--------GAGGNIKCLENVDRHILI  844 (1034)
T ss_pred             eecccccchhHhhh-----------cCc------------------------cc--------CCCceeEecccCcchhee
Confidence            99986665433211           111                        00        111123333211122344


Q ss_pred             E-eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          256 T-GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       256 s-~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      + ++...+++++|.+.+.....++.-                                                      
T Consensus       845 AgcsaeSTVKl~DaRsce~~~E~kVc------------------------------------------------------  870 (1034)
T KOG4190|consen  845 AGCSAESTVKLFDARSCEWTCELKVC------------------------------------------------------  870 (1034)
T ss_pred             eeccchhhheeeecccccceeeEEec------------------------------------------------------
Confidence            4 477889999998876654433210                                                      


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS  414 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g  414 (473)
                                          ...+....++++++.|.|+.+|.|-..|.|.+.|.++|+.+..++.-..-...++ .|..
T Consensus       871 --------------------na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsd  929 (1034)
T KOG4190|consen  871 --------------------NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSD  929 (1034)
T ss_pred             --------------------cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-Cchh
Confidence                                0112234578899999999999999999999999999998888776554444454 4667


Q ss_pred             CEEEEEeCCCcEEE-EECCCCcee
Q 011978          415 RLLLSGSKDSTLKV-WDIRTQKLK  437 (473)
Q Consensus       415 ~~l~s~s~Dg~i~i-wd~~~~~~~  437 (473)
                      +.|+....|.++-+ |..-.+...
T Consensus       930 q~L~~saldHslaVnWhaldgimh  953 (1034)
T KOG4190|consen  930 QALAQSALDHSLAVNWHALDGIMH  953 (1034)
T ss_pred             HHHHhhcccceeEeeehhcCCeee
Confidence            78888888888888 877665543

>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO)

Probab=99.25  E-value=3.3e-11  Score=80.45  Aligned_cols=62  Identities=34%  Similarity=0.599  Sum_probs=58.0

Q ss_pred             eEEEEEECCCC--CcCCCeeeecCCCCHHHHHHHHHHHh-cCCCCcceEEEecCeeecccHHhHH
Q 011978           10 NVMCLLTDPEG--NPLGAPMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAFYISDHELLVPLGSYL   71 (473)
Q Consensus        10 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~   71 (473)
                      ||+|.|.++++  .+++.|+.+|.++++.+|+.++|+|+ +.+++.||+|++++..++.+|++++
T Consensus         1 qv~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr~sL~~~l   65 (65)
T PF08154_consen    1 QVQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEELRTSLEEHL   65 (65)
T ss_pred             CEEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEeechHHHhC
Confidence            68999998877  89999999999999999999999999 8889999999999999999998864

It is found in the microtubule-associated protein Q12024 from SWISSPROT [].

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.25  E-value=1.7e-08  Score=91.90  Aligned_cols=323  Identities=16%  Similarity=0.207  Sum_probs=183.8

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC--------------
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--------------  172 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg--------------  172 (473)
                      -.-++..+.+||.|.+|++... ..|.+|.......+..+. | ..|.-+.|||++++|.+=+..+              
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            3457888999999999987543 468999887766544443 3 3489999999999999865443              


Q ss_pred             -eEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE-EEecC-ccccEEEEEec
Q 011978          173 -ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-ICLSG-HTLAVTCVKWG  249 (473)
Q Consensus       173 -~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~-~~~~~-h~~~v~~~~~~  249 (473)
                       .+.+||..+|..+.. +..-..+  .+.|.-..++.+..+.+-. ....+.|+++ +.... .-+.. ....|..-.|+
T Consensus       108 n~~~vwd~~sg~iv~s-f~~~~q~--~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsis  182 (561)
T COG5354         108 NNVFVWDIASGMIVFS-FNGISQP--YLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSIS  182 (561)
T ss_pred             CceeEEeccCceeEee-ccccCCc--ccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEec
Confidence             489999988864321 1111111  1112111111111122111 2356788886 32211 11100 01345556666


Q ss_pred             CCC---eEE-----EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeec-cccC--CCcccCCHHHHHHHHH
Q 011978          250 GDG---VIY-----TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG-AFDH--TGKQYSSPEEMKKAAL  318 (473)
Q Consensus       250 ~~~---~l~-----s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~  318 (473)
                      |.+   .|+     ....++++++|.+..++.+.+...-...-..+.+.+....... ...+  ..+.+           
T Consensus       183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsy-----------  251 (561)
T COG5354         183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSY-----------  251 (561)
T ss_pred             CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccce-----------
Confidence            653   222     2567888999988866655432111100011111111110000 0000  00000           


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE--CCCcEEEEeCCCCceEE
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVA  396 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs--~d~~v~lwd~~~~~~~~  396 (473)
                                       -....++++++.....+..  ..-.+.|...+|.|.++.+++.+  .+..+.++|++.. ...
T Consensus       252 -----------------fgesnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~  311 (561)
T COG5354         252 -----------------FGESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF  311 (561)
T ss_pred             -----------------eccceEEEEeeccccccee--ccccccceeeeecccCCceeEEecccccceeecccccc-eEE
Confidence                             0123456666542222222  14467899999999988777655  6778999998765 333


Q ss_pred             EeeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCcee-ecccccCCCEEEEEEeeCCCEEEEEe------CCC
Q 011978          397 VFRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKVASGG------KDR  466 (473)
Q Consensus       397 ~~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~~~~~~~-~~~~~h~~~i~~l~~s~d~~~l~s~~------~D~  466 (473)
                      .+  ....=+.+.|||.+++++.++-|   |.|.+||....... ..+.+-.  -.-+.|+||++++-+..      .|.
T Consensus       312 ~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn  387 (561)
T COG5354         312 YF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDN  387 (561)
T ss_pred             ec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCc
Confidence            33  34455678899999999998876   57999998765443 3554433  34568999999987654      367


Q ss_pred             cEEecc
Q 011978          467 VLKLWM  472 (473)
Q Consensus       467 ~i~~w~  472 (473)
                      .++||+
T Consensus       388 ~i~l~~  393 (561)
T COG5354         388 SIKLWD  393 (561)
T ss_pred             ceEEEE
Confidence            888886

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=6.8e-09  Score=98.04  Aligned_cols=295  Identities=16%  Similarity=0.270  Sum_probs=183.0

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee---------------EEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---------------FKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~---------------~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~  173 (473)
                      ....|++|+....++|.|+.||.+++-.+.+...-               ..+.+|...|..+.|+.+.+.|-+...+|-
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            45789999999999999999999999987654211               235689999999999999999999999999


Q ss_pred             EEEeeCCCCccccccCCC-cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE-EEecCccccEEEEEecCC
Q 011978          174 LQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-ICLSGHTLAVTCVKWGGD  251 (473)
Q Consensus       174 i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~  251 (473)
                      |.+|-+-.|......+.. .+..|.+++|+.     ++.++...-.||.|.+=.+..++.- +.++|.  -...+.|++|
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-----dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D  167 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-----DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSED  167 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcC-----CCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeeccc
Confidence            999998877654333333 344567888865     4556665556665554443322110 112221  1234678888


Q ss_pred             C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccce--eeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978          252 G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA--LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (473)
Q Consensus       252 ~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
                      . .++.+-..|.+.++|.+..- ...++. ...|+.-....++.  +....+.. +               ++.... ..
T Consensus       168 ~~~~Lf~~ange~hlydnqgnF-~~Kl~~-~c~Vn~tg~~s~~~~kia~i~w~~-g---------------~~~~v~-pd  228 (1189)
T KOG2041|consen  168 LEQALFKKANGETHLYDNQGNF-ERKLEK-DCEVNGTGIFSNFPTKIAEIEWNT-G---------------PYQPVP-PD  228 (1189)
T ss_pred             HHHHHhhhcCCcEEEecccccH-HHhhhh-ceEEeeeeeecCCCccccceeecc-C---------------ccccCC-CC
Confidence            6 35566777999999865431 111110 00011111111100  00000000 0               000000 11


Q ss_pred             CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC---------cEEEEeCCCCceEEEee
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK---------SIKLWNGTTGKFVAVFR  399 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~---------~v~lwd~~~~~~~~~~~  399 (473)
                      ...++.+-..|.+.+-.-.+...|.....+  -.+..+.|+++|..||.++.|.         .|.++.. -|+.+.+++
T Consensus       229 rP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlk  305 (1189)
T KOG2041|consen  229 RPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLK  305 (1189)
T ss_pred             CCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEe
Confidence            235788888888887765444444444333  4577889999999999998653         4555543 366677777


Q ss_pred             CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          400 GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       400 ~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      .....|++++|-..|-.+|.+ -|+.|++=+++.
T Consensus       306 vpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP  338 (1189)
T KOG2041|consen  306 VPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP  338 (1189)
T ss_pred             cCCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence            777789999998777776655 467777666654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=7.6e-11  Score=121.21  Aligned_cols=162  Identities=17%  Similarity=0.276  Sum_probs=124.8

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~  182 (473)
                      +.-|-..|.++.-+|...+.+||+.||.|++|.+..++++.... .-...|+.+.|+.+|..+..+..||.+.+|.....
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc
Confidence            34456778888889999999999999999999998887765543 22378999999999999999999999999987622


Q ss_pred             ccccccCCCcCCcEEEEEeceeccCCCCceEEEe---eCCCcEEEEECCC--C-eEEEEecCccccEEEEEecCCC-eEE
Q 011978          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA---SKDGDARIWDVSL--R-KCVICLSGHTLAVTCVKWGGDG-VIY  255 (473)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~---s~dg~i~iwd~~~--~-~~~~~~~~h~~~v~~~~~~~~~-~l~  255 (473)
                        ....-..|++......|..       ..++++   +.++.+.+||.-.  . .++.  ..|...++++++.|.. .++
T Consensus      2284 --~~~s~qchnk~~~Df~Fi~-------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2284 --PYTSWQCHNKALSDFRFIG-------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred             --ceeccccCCccccceeeee-------hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEE
Confidence              2233466777777776654       234443   4578999999643  2 2333  6899999999999876 588


Q ss_pred             EeecCCeEEEEECCCCceeee
Q 011978          256 TGSQDCTIKVWETTQGKLIRE  276 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~  276 (473)
                      +|+.+|.|++||++..++++.
T Consensus      2353 sggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred             ecCCcCcEEEeehHHHHHHHH
Confidence            999999999999987665543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=5.8e-09  Score=100.51  Aligned_cols=140  Identities=26%  Similarity=0.277  Sum_probs=86.6

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCC---CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEE-EecCCe--EEE
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGE--LQC  176 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s-~~~dg~--i~i  176 (473)
                      .+..+...+.+.+|+|||++|+..+.+   ..|.+||+.+++... +..........+|+|||+.|+. .+.+|.  |++
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence            344556678899999999999876542   368889998776432 2222333457899999998875 455664  788


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEee-CCC--cEEEEECCCCeEEEE-ecCccccEEEEEecCCC
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDG--DARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG  252 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg--~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~  252 (473)
                      +|+.+++..  .+..+........|+|     ++..++..+ .++  .|.++|+.+++.... ..++  ......|++||
T Consensus       291 ~dl~tg~~~--~lt~~~~~~~~p~wSp-----DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG  361 (448)
T PRK04792        291 VDIATKALT--RITRHRAIDTEPSWHP-----DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDG  361 (448)
T ss_pred             EECCCCCeE--ECccCCCCccceEECC-----CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCC
Confidence            888877543  2333444445566766     445555443 344  455667766654332 2222  22346788887

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=1.2e-09  Score=93.13  Aligned_cols=285  Identities=18%  Similarity=0.303  Sum_probs=163.2

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc-e----eEEEcCCCC------------CEEEEEECCCC--CeEEE
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-P----MFKCTGHKN------------WVLCIAWSADG--KHLVS  167 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~-~----~~~~~~~~~------------~v~~l~~s~dg--~~l~s  167 (473)
                      ..+.|+++.|...|.+||+|...|.|.+|.-+... +    ...+++|+.            .|..+.|-.++  .+++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34678999999999999999888999999754322 1    122445532            36677776543  36777


Q ss_pred             EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEE--ee-CCCcEEEEECCCCeEEEEecCccccEE
Q 011978          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS--AS-KDGDARIWDVSLRKCVICLSGHTLAVT  244 (473)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s--~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~  244 (473)
                      .+.|.+|++|.+............-...+....--|..   ....+.-  .+ .|..|...     .+...-..|..-|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~---s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiN  176 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLT---STKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHIN  176 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcC---CHHHhhcccccccceEEEec-----cceeccccceeEee
Confidence            78899999998765421100000000000000000000   0000000  00 00000000     01111245777788


Q ss_pred             EEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcc
Q 011978          245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (473)
Q Consensus       245 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (473)
                      +++++.|...+.++.|=.|.+|++.-.                                                     
T Consensus       177 SiS~NsD~et~lSaDdLrINLWnl~i~-----------------------------------------------------  203 (460)
T COG5170         177 SISFNSDKETLLSADDLRINLWNLEII-----------------------------------------------------  203 (460)
T ss_pred             eeeecCchheeeeccceeeeecccccc-----------------------------------------------------
Confidence            899988877666777888889976421                                                     


Q ss_pred             cCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCce------E--
Q 011978          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKF------V--  395 (473)
Q Consensus       325 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~------~--  395 (473)
                                   |+...|-|+..     ..+..-...|++..|+|. ...+...+..|.|++-|++...+      +  
T Consensus       204 -------------D~sFnIVDiKP-----~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe  265 (460)
T COG5170         204 -------------DGSFNIVDIKP-----HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE  265 (460)
T ss_pred             -------------CCceEEEeccC-----ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence                         11111222111     111112234677788885 45667777889999999874321      0  


Q ss_pred             --------EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC-Cceeeccccc------------CCCEE---EEE
Q 011978          396 --------AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT-QKLKQDLPGH------------ADEVF---AVD  451 (473)
Q Consensus       396 --------~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~h------------~~~i~---~l~  451 (473)
                              .-+.+-...|.++.|+++|+++++-+. -+|+|||++. ..++.+++-|            .+.|+   .+.
T Consensus       266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis  344 (460)
T COG5170         266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS  344 (460)
T ss_pred             hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence                    112223457899999999999987653 5799999975 3445555433            23343   478


Q ss_pred             EeeCCCEEEEEeCCCcEEec
Q 011978          452 WSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       452 ~s~d~~~l~s~~~D~~i~~w  471 (473)
                      ||.|.+.+.+|+..+..-++
T Consensus       345 fSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         345 FSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             ecCCcccccccccccceeee
Confidence            99999999998877654443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.9e-08  Score=96.18  Aligned_cols=225  Identities=19%  Similarity=0.154  Sum_probs=128.5

Q ss_pred             cccCCcccEEEEEECCCCCeEE---EEeCC--CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec-CC----
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLA---SGSGD--TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AG----  172 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~la---t~s~d--~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg----  172 (473)
                      .+......+.+.+|||||+.++   +...+  ..|.+.++.+++... +....+......|||||++|+..+. +|    
T Consensus       179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di  257 (428)
T PRK01029        179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDL  257 (428)
T ss_pred             EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence            3444455677889999998632   33333  467777888765432 2333444567899999999886553 23    


Q ss_pred             eEEEeeCCCCc--cccccCCCcCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEE--CCC-CeEEEEecCccccEEEE
Q 011978          173 ELQCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWD--VSL-RKCVICLSGHTLAVTCV  246 (473)
Q Consensus       173 ~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd--~~~-~~~~~~~~~h~~~v~~~  246 (473)
                      .+.+|++..+.  .......++........|+|     ++.+++..+ .+|...+|.  +.. +.....+..+...+...
T Consensus       258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-----DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p  332 (428)
T PRK01029        258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-----DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP  332 (428)
T ss_pred             eEEEeecccCCCCcceEeecCCCCCcCCeEECC-----CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence            34447766531  11112222222334556665     566666554 466656664  332 22233344444556778


Q ss_pred             EecCCCe-EEEe-ecC--CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978          247 KWGGDGV-IYTG-SQD--CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (473)
Q Consensus       247 ~~~~~~~-l~s~-~~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (473)
                      .|+|||. |+.. ..+  ..|.+||+.+++... +                                             
T Consensus       333 ~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-L---------------------------------------------  366 (428)
T PRK01029        333 AWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-L---------------------------------------------  366 (428)
T ss_pred             eECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-c---------------------------------------------
Confidence            8999884 4433 322  356777766553211 0                                             


Q ss_pred             cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC---CCcEEEEeCCCCceEEEee
Q 011978          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTGKFVAVFR  399 (473)
Q Consensus       323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~---d~~v~lwd~~~~~~~~~~~  399 (473)
                                                        ......+....|+|||++|+..+.   ...|.++|+..++......
T Consensus       367 ----------------------------------t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        367 ----------------------------------TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI  412 (428)
T ss_pred             ----------------------------------cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence                                              000112345689999998886543   3468888998877654443


Q ss_pred             CCccCEEEEEEecCC
Q 011978          400 GHVGPVYQISWSADS  414 (473)
Q Consensus       400 ~h~~~v~~v~~sp~g  414 (473)
                       ..+.+...+|+|-.
T Consensus       413 -~~g~~~~p~Ws~~~  426 (428)
T PRK01029        413 -GSGEKRFPSWGAFP  426 (428)
T ss_pred             -CCCcccCceecCCC
Confidence             44556778888753

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.18  E-value=7.3e-09  Score=87.72  Aligned_cols=259  Identities=17%  Similarity=0.267  Sum_probs=159.0

Q ss_pred             CCeEEEEeCCCCcee----EEEcCCCCCEEEEEECC---CCC-eEEEEecCCeEEEeeCCCCcccc--ccCCCcCCcE--
Q 011978          129 DTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSA---DGK-HLVSGSKAGELQCWDPQTGKPSG--NPLSGHKKWI--  196 (473)
Q Consensus       129 d~~i~iwd~~~~~~~----~~~~~~~~~v~~l~~s~---dg~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v--  196 (473)
                      .|.+.+|+++..+..    ...+.| ..+..|.|.-   +|. .++-+..+|.|.++.........  ..+..-.-.+  
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             ccceEEEeecccccCccceeeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            356777776543221    112222 3455566652   444 45556677889888764332111  1111111111  


Q ss_pred             -EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE--EEecCccccEEEEEecCC--CeEEEeecCCeEEEEECC-C
Q 011978          197 -TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETT-Q  270 (473)
Q Consensus       197 -~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~-~  270 (473)
                       -++.|++     .+..++++-.+|.+.+-+.......  +..++|..+++-+.|+..  +++++|+.|+.+.-||++ .
T Consensus       124 ~lslD~~~-----~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  124 ALSLDIST-----SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             eeEEEeec-----cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence             2344444     3456778888888885555444333  367889999998888743  478999999999999998 4


Q ss_pred             Cceeee-eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978          271 GKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (473)
Q Consensus       271 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  349 (473)
                      ++.+.+ .+.|...|.++.-++.                                   .+..+++|+.|..+++||.++.
T Consensus       199 ~~~i~~n~kvH~~GV~SI~ss~~-----------------------------------~~~~I~TGsYDe~i~~~DtRnm  243 (339)
T KOG0280|consen  199 KTFIWHNSKVHTSGVVSIYSSPP-----------------------------------KPTYIATGSYDECIRVLDTRNM  243 (339)
T ss_pred             cceeeecceeeecceEEEecCCC-----------------------------------CCceEEEeccccceeeeehhcc
Confidence            444443 4556666666654432                                   2457999999999999998866


Q ss_pred             CCCeeeecCcccceeEEEECCC--CcEEEEEECCCcEEEEeCCCC--c---eEEEeeCCccCEEEEEEecCCCEEEEEe-
Q 011978          350 KQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTG--K---FVAVFRGHVGPVYQISWSADSRLLLSGS-  421 (473)
Q Consensus       350 ~~~~~~~~~~~~~v~~v~~sp~--g~~lasgs~d~~v~lwd~~~~--~---~~~~~~~h~~~v~~v~~sp~g~~l~s~s-  421 (473)
                      .++..... -.+.|+.+..+|.  +++|+++-..| .+|-+...+  +   ....++.|.+-+..-.|.....+||++| 
T Consensus       244 ~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF  321 (339)
T KOG0280|consen  244 GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSF  321 (339)
T ss_pred             cCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeec
Confidence            65544322 2367999999984  44555555544 566665543  2   3445667777777777755556788876 


Q ss_pred             CCCcEE-EEE
Q 011978          422 KDSTLK-VWD  430 (473)
Q Consensus       422 ~Dg~i~-iwd  430 (473)
                      .|+.++ +|-
T Consensus       322 YDk~~~~~Wl  331 (339)
T KOG0280|consen  322 YDKKIRQLWL  331 (339)
T ss_pred             cccceeeeee
Confidence            466644 663

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.18  E-value=7.8e-08  Score=99.54  Aligned_cols=312  Identities=17%  Similarity=0.229  Sum_probs=177.9

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEE----eCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLW----DLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iw----d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~  182 (473)
                      ..+.|.++.+-++...++.+..+|.|.+.    +..+... -....-+.+|.+++||||+..|+..+.++++.+-+. +-
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~f  151 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DF  151 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cc
Confidence            45789999999999999999999999998    5444321 111233568999999999999999999998877542 11


Q ss_pred             ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE--------------EEecCccccEEEEEe
Q 011978          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV--------------ICLSGHTLAVTCVKW  248 (473)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~--------------~~~~~h~~~v~~~~~  248 (473)
                      ..           +......+..+  ....+++.|+..+=.-+.-+.++..              ..+. +...-..++|
T Consensus       152 d~-----------i~E~~l~~~~~--~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISW  217 (928)
T PF04762_consen  152 DP-----------ISEVPLDSDDF--GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISW  217 (928)
T ss_pred             eE-----------EEEeecCcccc--CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEE
Confidence            11           11121122111  1124455444332211111111110              0111 2334567899


Q ss_pred             cCCCeE-EEeec------CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978          249 GGDGVI-YTGSQ------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (473)
Q Consensus       249 ~~~~~l-~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
                      .+||.+ ++.+-      -+.+|+|+-+ |.+....+.-.+.-..+++.|.+.                           
T Consensus       218 RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~---------------------------  269 (928)
T PF04762_consen  218 RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN---------------------------  269 (928)
T ss_pred             CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC---------------------------
Confidence            999954 33332      2578999854 554333222111112233333322                           


Q ss_pred             hcccCCCCceEEEec---CCceEEEEeCCCCCCCeeeec--CcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE-
Q 011978          322 NKIKGNAPERLVSGS---DDFTMFLWEPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-  395 (473)
Q Consensus       322 ~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~-  395 (473)
                               .+++..   ....|.+|+....+.....+.  .....|..++|++|+..||..-.|. |++|-..+-... 
T Consensus       270 ---------lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYL  339 (928)
T PF04762_consen  270 ---------LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYL  339 (928)
T ss_pred             ---------EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEE
Confidence                     222221   124566666433222222222  3455789999999999999987665 999987664422 


Q ss_pred             -EEeeC-CccCEEEEEEecC-CCEEEEEeCCCcEEEEEC----CCC----------------c-e-eecc-----c----
Q 011978          396 -AVFRG-HVGPVYQISWSAD-SRLLLSGSKDSTLKVWDI----RTQ----------------K-L-KQDL-----P----  441 (473)
Q Consensus       396 -~~~~~-h~~~v~~v~~sp~-g~~l~s~s~Dg~i~iwd~----~~~----------------~-~-~~~~-----~----  441 (473)
                       +.+.- ....+..+.|+|. ...|.....+|.+..++.    ..+                . . +..+     +    
T Consensus       340 Kqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs  419 (928)
T PF04762_consen  340 KQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMS  419 (928)
T ss_pred             EEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHh
Confidence             22221 2233455899984 445666666666655442    111                0 0 0111     0    


Q ss_pred             ----ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          442 ----GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       442 ----~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                          .-...|.+++|++++..++....|+.|.+|.
T Consensus       420 ~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  420 SYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             ceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                1235789999999998899999999999885

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.15  E-value=5.2e-07  Score=82.30  Aligned_cols=269  Identities=13%  Similarity=0.072  Sum_probs=152.2

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec----------CCeEEEeeCCCCccccccCCCcC------
Q 011978          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK----------AGELQCWDPQTGKPSGNPLSGHK------  193 (473)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~------  193 (473)
                      ++|.+.|..+.+.+..+..-..+-. + +||||+.|+.+..          +..|.+||..+.+.......+-.      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            8999999999877666653333322 4 9999999987765          68999999999876543322111      


Q ss_pred             CcEEEEEeceeccCCCCceEEEee-C-CCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECC-C
Q 011978          194 KWITGISWEPVHLNAPCRRFVSAS-K-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-Q  270 (473)
Q Consensus       194 ~~v~~i~~~~~~~~~~~~~~~s~s-~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-~  270 (473)
                      .....+.+     ++++++++... . +..|-+.|+.+++.+..+.-.. ...-.. .++.....-+.||......+. +
T Consensus       105 ~~~~~~~l-----s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~  177 (352)
T TIGR02658       105 TYPWMTSL-----TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP-TANDTFFMHCRDGSLAKVGYGTK  177 (352)
T ss_pred             CccceEEE-----CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE-ecCCccEEEeecCceEEEEecCC
Confidence            01112223     33555565544 3 6889999999988877654211 111111 111222223344433332221 1


Q ss_pred             CceeeeeeccCceEEEEE-ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978          271 GKLIRELKGHGHWVNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (473)
Q Consensus       271 ~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  349 (473)
                      |+..         ..... +..+..          ..+..+            .........+..... |++.+.|+...
T Consensus       178 g~~~---------~~~~~vf~~~~~----------~v~~rP------------~~~~~dg~~~~vs~e-G~V~~id~~~~  225 (352)
T TIGR02658       178 GNPK---------IKPTEVFHPEDE----------YLINHP------------AYSNKSGRLVWPTYT-GKIFQIDLSSG  225 (352)
T ss_pred             CceE---------EeeeeeecCCcc----------ccccCC------------ceEcCCCcEEEEecC-CeEEEEecCCC
Confidence            2110         00000 000000          000000            000001223333333 88888885332


Q ss_pred             CC----Ceeee-------cCcccceeEEEECCCCcEEEEEEC----------CCcEEEEeCCCCceEEEeeCCccCEEEE
Q 011978          350 KQ----PKTRM-------TGHQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (473)
Q Consensus       350 ~~----~~~~~-------~~~~~~v~~v~~sp~g~~lasgs~----------d~~v~lwd~~~~~~~~~~~~h~~~v~~v  408 (473)
                      ..    +....       .-......-++++|+++.+.....          .+.|.++|..+++.+..+.- ...+..+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~i  304 (352)
T TIGR02658       226 DAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSI  304 (352)
T ss_pred             cceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeE
Confidence            11    11111       012333445999999998887431          24799999999999888763 3478999


Q ss_pred             EEecCCC-EEEEEe-CCCcEEEEECCCCceeecc
Q 011978          409 SWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDL  440 (473)
Q Consensus       409 ~~sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~  440 (473)
                      +++||++ +|++.. .++.|.++|..+++.+.++
T Consensus       305 avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       305 NVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9999999 877666 5788999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.15  E-value=1.8e-07  Score=84.65  Aligned_cols=109  Identities=15%  Similarity=0.184  Sum_probs=91.0

Q ss_pred             cCcccceeEEEECCCCcEEEEEECCC-cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011978          357 TGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK  435 (473)
Q Consensus       357 ~~~~~~v~~v~~sp~g~~lasgs~d~-~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~  435 (473)
                      .++...|.-..+..+++-++.|..|| .+-++|..+++. ..+...-+.|.++..+|||++++.+.....+.+.|+.+++
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            34556677777888888899999998 899999987764 4556677899999999999999999888899999999988


Q ss_pred             eeecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       436 ~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      ....-+...+-|+.++|||+++++|-+=.+|
T Consensus       435 v~~idkS~~~lItdf~~~~nsr~iAYafP~g  465 (668)
T COG4946         435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEG  465 (668)
T ss_pred             eeEecccccceeEEEEEcCCceeEEEecCcc
Confidence            7655555667899999999999999887765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.15  E-value=4.6e-10  Score=106.04  Aligned_cols=283  Identities=17%  Similarity=0.316  Sum_probs=174.3

Q ss_pred             CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC-ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG-KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (473)
Q Consensus       150 ~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~  228 (473)
                      .+++..+..+|.|+-++.++.-|- .+-|+... ........-..-.|-.+.|+|..   ...+.+.........+|++.
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~---a~~~wiVsts~qkaiiwnlA   99 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHP---AKPYWIVSTSNQKAIIWNLA   99 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCC---CCceeEEecCcchhhhhhhh
Confidence            456778889999998888877654 34454432 11111000011123445566532   23455666666777889875


Q ss_pred             C---CeEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCce-eeeeeccCceEEEEEecccceeeeccccC
Q 011978          229 L---RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       229 ~---~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                      .   ...-..+.||..+|+.+.|++..  .+++++-|-.+..||+++-.. +..+..-...-..+.++            
T Consensus       100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn------------  167 (1081)
T KOG0309|consen  100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN------------  167 (1081)
T ss_pred             cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec------------
Confidence            3   34445678999999999998765  688999999999999886432 11111000000000000            


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFD  381 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d  381 (473)
                          |                   ..+ .+...+..+.+++||.+.+..+...+.+|...|+.++|.. ....+.+.+.|
T Consensus       168 ----y-------------------k~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d  223 (1081)
T KOG0309|consen  168 ----Y-------------------KDP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND  223 (1081)
T ss_pred             ----c-------------------cCc-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence                0                   011 2445566778999999988888888888999999998875 34568889999


Q ss_pred             CcEEEEeCCCCceEE-EeeCCccCEEEEEEecCCC--EEEEEeCCCcEE---------EEECCC-CceeecccccCCCEE
Q 011978          382 KSIKLWNGTTGKFVA-VFRGHVGPVYQISWSADSR--LLLSGSKDSTLK---------VWDIRT-QKLKQDLPGHADEVF  448 (473)
Q Consensus       382 ~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp~g~--~l~s~s~Dg~i~---------iwd~~~-~~~~~~~~~h~~~i~  448 (473)
                      ++|++||........ .......+|..-.|-|-|.  ++.---.+..+-         .|+..+ .+.+.++.||.+.|.
T Consensus       224 ~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~  303 (1081)
T KOG0309|consen  224 GTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL  303 (1081)
T ss_pred             CceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence            999999987543211 1111234566666666332  221111122333         344333 345778999999887


Q ss_pred             EEEEeeCC----------CEEEEEeCCCcEEecc
Q 011978          449 AVDWSPDG----------EKVASGGKDRVLKLWM  472 (473)
Q Consensus       449 ~l~~s~d~----------~~l~s~~~D~~i~~w~  472 (473)
                      ..-|-..+          -.|++-+.|.++|+|-
T Consensus       304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp  337 (1081)
T KOG0309|consen  304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP  337 (1081)
T ss_pred             HHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence            76664332          2789999999999994

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.15  E-value=5.4e-07  Score=84.10  Aligned_cols=229  Identities=16%  Similarity=0.255  Sum_probs=130.5

Q ss_pred             CCceEEEeeC----CCcEEEEECCCC--eE--EEEecCccccEEEEEecCCC-eEEEe-ecCCeEEEEECCC-Cceeeee
Q 011978          209 PCRRFVSASK----DGDARIWDVSLR--KC--VICLSGHTLAVTCVKWGGDG-VIYTG-SQDCTIKVWETTQ-GKLIREL  277 (473)
Q Consensus       209 ~~~~~~s~s~----dg~i~iwd~~~~--~~--~~~~~~h~~~v~~~~~~~~~-~l~s~-~~d~~i~~wd~~~-~~~~~~~  277 (473)
                      +..++.+...    ++.|..|++...  +.  +............+++++++ .++++ -.+|++.++++.. |.+....
T Consensus        47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~  126 (345)
T PF10282_consen   47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV  126 (345)
T ss_dssp             TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred             CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence            4455655544    578888887653  32  22222122234457788877 35554 4689999999876 4332221


Q ss_pred             --ecc-----------CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978          278 --KGH-----------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (473)
Q Consensus       278 --~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  344 (473)
                        ..+           ....-.+.++|+.                                   ...+++.-....|.+|
T Consensus       127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-----------------------------------~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen  127 QTVRHEGSGPNPDRQEGPHPHQVVFSPDG-----------------------------------RFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EEEESEEEESSTTTTSSTCEEEEEE-TTS-----------------------------------SEEEEEETTTTEEEEE
T ss_pred             eecccCCCCCcccccccccceeEEECCCC-----------------------------------CEEEEEecCCCEEEEE
Confidence              100           0011122222211                                   1123333444567777


Q ss_pred             eCCCCCCCee----eecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCC--CCce--EEEeeC----C--ccCEEEEE
Q 011978          345 EPAVSKQPKT----RMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGT--TGKF--VAVFRG----H--VGPVYQIS  409 (473)
Q Consensus       345 d~~~~~~~~~----~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~--~~~~--~~~~~~----h--~~~v~~v~  409 (473)
                      +.........    .........+.++|+|+++++.... .+++|.++++.  ++..  +.....    .  ......++
T Consensus       172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  251 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA  251 (345)
T ss_dssp             EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred             EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence            7654432111    1223345678899999999886665 46789999887  4432  222211    1  12578999


Q ss_pred             EecCCCEEEEEe-CCCcEEEEECC--CCce--eecccccCCCEEEEEEeeCCCEEEEEe-CCCcEEecc
Q 011978          410 WSADSRLLLSGS-KDSTLKVWDIR--TQKL--KQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLKLWM  472 (473)
Q Consensus       410 ~sp~g~~l~s~s-~Dg~i~iwd~~--~~~~--~~~~~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~~w~  472 (473)
                      ++|||++|+++. .++.|.+|++.  ++++  +..+......-..+.++|||++|+++. .++.|.+|.
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence            999999887765 46789999993  2333  334433334478899999999998877 456777763

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.14  E-value=8.4e-07  Score=82.79  Aligned_cols=251  Identities=19%  Similarity=0.244  Sum_probs=148.7

Q ss_pred             EEEEEECCCCCeEEEEeC----CCeEEEEeCCCC--c--eeEEEcCCCCCEEEEEECCCCCeEEEEec-CCeEEEeeCCC
Q 011978          111 VLSVAFSPDGRQLASGSG----DTTVRLWDLNTQ--T--PMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQT  181 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~----d~~i~iwd~~~~--~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~iwd~~~  181 (473)
                      ...++++|++++|.++..    ++.|..|.+...  .  .+.........-..++++|++++|+++.+ +|.+.++++..
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            445789999999988866    579999988654  2  22222223344567999999999999875 79999999876


Q ss_pred             -Ccccccc-CC-----------CcCCcEEEEEeceeccCCCCceEEE-eeCCCcEEEEECCCCe--EEE--Ee-cCcccc
Q 011978          182 -GKPSGNP-LS-----------GHKKWITGISWEPVHLNAPCRRFVS-ASKDGDARIWDVSLRK--CVI--CL-SGHTLA  242 (473)
Q Consensus       182 -~~~~~~~-~~-----------~~~~~v~~i~~~~~~~~~~~~~~~s-~s~dg~i~iwd~~~~~--~~~--~~-~~h~~~  242 (473)
                       |...... ..           .-.....++.+.|     +++++++ .-....|.+|++....  ...  .+ ......
T Consensus       119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-----dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G  193 (345)
T PF10282_consen  119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-----DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG  193 (345)
T ss_dssp             TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-----TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred             CcccceeeeecccCCCCCcccccccccceeEEECC-----CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence             3321110 00           0112344555555     4444443 3344578888886654  211  11 123344


Q ss_pred             EEEEEecCCCe--EEEeecCCeEEEEECC--CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          243 VTCVKWGGDGV--IYTGSQDCTIKVWETT--QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       243 v~~~~~~~~~~--l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      -..+.|++++.  .++...+++|.++++.  ++... .       +..+...+.                          
T Consensus       194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~-~-------~~~~~~~~~--------------------------  239 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT-E-------IQTISTLPE--------------------------  239 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE-E-------EEEEESCET--------------------------
T ss_pred             CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee-E-------EEEeeeccc--------------------------
Confidence            56788999873  3456678889988776  33211 0       001100000                          


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCC--CCce-
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGT--TGKF-  394 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~--~~~~-  394 (473)
                                                          .. ........|+++|||++|.++.. .++|.+|++.  ++++ 
T Consensus       240 ------------------------------------~~-~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~  282 (345)
T PF10282_consen  240 ------------------------------------GF-TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT  282 (345)
T ss_dssp             ------------------------------------TS-CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE
T ss_pred             ------------------------------------cc-cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE
Confidence                                                00 00124567899999999887664 5689999983  3443 


Q ss_pred             -EEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEEC--CCCcee
Q 011978          395 -VAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDI--RTQKLK  437 (473)
Q Consensus       395 -~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~--~~~~~~  437 (473)
                       +..+.........++++|+|++|+++. .++.|.+|++  .++++.
T Consensus       283 ~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  283 LVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             EEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence             333332233478999999999999887 4668999976  455543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.12  E-value=1.3e-07  Score=99.88  Aligned_cols=262  Identities=16%  Similarity=0.163  Sum_probs=155.5

Q ss_pred             EEEECCC-CCeEEEEeCCCeEEEEeCCCCceeEEEc-CC------------CCCEEEEEECCCCCeEEEEec-CCeEEEe
Q 011978          113 SVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKCT-GH------------KNWVLCIAWSADGKHLVSGSK-AGELQCW  177 (473)
Q Consensus       113 ~~~~sp~-~~~lat~s~d~~i~iwd~~~~~~~~~~~-~~------------~~~v~~l~~s~dg~~l~s~~~-dg~i~iw  177 (473)
                      .++++++ +..+++-+..+.|++||..+......-. +.            -..-..+++++++..|+.+.. .+.|+.+
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i  651 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI  651 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence            5788875 4556666778899999986543221111 11            112467899998887766554 5679999


Q ss_pred             eCCCCccccccCCCc---------------CCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe------
Q 011978          178 DPQTGKPSGNPLSGH---------------KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL------  236 (473)
Q Consensus       178 d~~~~~~~~~~~~~~---------------~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~------  236 (473)
                      |..++......-.+.               -..-.++.+.|.    .+..+++.+.++.|++||..++......      
T Consensus       652 d~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~----~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        652 DFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV----NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             ecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC----CCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            987654321100000               011234555441    3456778888899999998876543211      


Q ss_pred             --cCc------cccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcc
Q 011978          237 --SGH------TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (473)
Q Consensus       237 --~~h------~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  306 (473)
                        .++      ......+++++++  ++++.+.++.|++||..++.... +.+ +..+     .+..             
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~-~~g-g~~~-----~~~~-------------  787 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL-LAG-GDPT-----FSDN-------------  787 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE-EEe-cccc-----cCcc-------------
Confidence              011      1234568888876  34455667899999987654211 000 0000     0000             


Q ss_pred             cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEE
Q 011978          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (473)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l  386 (473)
                                              ..-.+..|+.          ....    .-.....++++++|+++++-+.++.|++
T Consensus       788 ------------------------l~~fG~~dG~----------g~~~----~l~~P~Gvavd~dG~LYVADs~N~rIrv  829 (1057)
T PLN02919        788 ------------------------LFKFGDHDGV----------GSEV----LLQHPLGVLCAKDGQIYVADSYNHKIKK  829 (1057)
T ss_pred             ------------------------cccccCCCCc----------hhhh----hccCCceeeEeCCCcEEEEECCCCEEEE
Confidence                                    0000000100          0000    0112457899999998888889999999


Q ss_pred             EeCCCCceEEEee-------------CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 011978          387 WNGTTGKFVAVFR-------------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL  436 (473)
Q Consensus       387 wd~~~~~~~~~~~-------------~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~  436 (473)
                      ||..++.......             +.......++++++|+.+++-+.++.|++||+.+++.
T Consensus       830 iD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        830 LDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            9998776543321             1223567899999999888888899999999988654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.12  E-value=1.7e-08  Score=84.46  Aligned_cols=233  Identities=16%  Similarity=0.096  Sum_probs=149.4

Q ss_pred             EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE-EEEecCccccEEEEEec--CCCeEEEeecCCeEEEEECCCCce
Q 011978          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKL  273 (473)
Q Consensus       197 ~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~  273 (473)
                      .++.|-|..+...|..++.|+.-|...+|...+... ++....|...|+-+.-.  ....+.-++.|.++++.++.-+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            456777888878889999999999999999886543 33333343333211111  112467789999999998765433


Q ss_pred             eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe
Q 011978          274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK  353 (473)
Q Consensus       274 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  353 (473)
                      -..+....-.+++++++++                                    +..+++-++...+..|.+.......
T Consensus       151 ~~~~h~~~~~~ns~~~snd------------------------------------~~~~~~Vgds~~Vf~y~id~~sey~  194 (344)
T KOG4532|consen  151 KFAVHNQNLTQNSLHYSND------------------------------------PSWGSSVGDSRRVFRYAIDDESEYI  194 (344)
T ss_pred             cceeeccccceeeeEEcCC------------------------------------CceEEEecCCCcceEEEeCCcccee
Confidence            2222222223555555554                                    2345666677777777765443322


Q ss_pred             e--eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE-----EEeeCCccCEEEEEEecCCC--EEEEEeCCC
Q 011978          354 T--RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-----AVFRGHVGPVYQISWSADSR--LLLSGSKDS  424 (473)
Q Consensus       354 ~--~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~-----~~~~~h~~~v~~v~~sp~g~--~l~s~s~Dg  424 (473)
                      .  ....-.+.--+..|+.....+|++..||++.|||++.....     ..-..|.|.+..+.|++-|.  +|.-.-.=+
T Consensus       195 ~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs  274 (344)
T KOG4532|consen  195 ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS  274 (344)
T ss_pred             eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcc
Confidence            2  22223334456789999999999999999999999865322     12235889999999998664  344444456


Q ss_pred             cEEEEECCCCceeecc-------cccCC-CEEEEEEeeCCCEEEEEeCC
Q 011978          425 TLKVWDIRTQKLKQDL-------PGHAD-EVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       425 ~i~iwd~~~~~~~~~~-------~~h~~-~i~~l~~s~d~~~l~s~~~D  465 (473)
                      .+.+.|+++++..+.+       ..|.. .|+.-.|+.++..+.+.+++
T Consensus       275 ~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  275 RVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             eEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence            7999999987654332       22333 38888888888766666554

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.11  E-value=4.3e-09  Score=90.96  Aligned_cols=242  Identities=18%  Similarity=0.300  Sum_probs=154.9

Q ss_pred             EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC-CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (473)
Q Consensus       144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i  222 (473)
                      ..++||.+.|.....-|...-+++.+.|.++++|--. .++........-...++++.+.+     ...+++.|-..|++
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-----e~~~L~vg~~ngtv   92 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-----ESRRLYVGQDNGTV   92 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-----cceEEEEEEecceE
Confidence            3456788888877777777889999999999999543 33322212222234556666554     34577788888888


Q ss_pred             EEEECCC----CeEEEEecCccccEEEEEecCC-CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeee
Q 011978          223 RIWDVSL----RKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT  297 (473)
Q Consensus       223 ~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  297 (473)
                      .-+.+..    ...+.....|...+..+-|+-. ..+++.+.|..+.---.+.+..+...                    
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y--------------------  152 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY--------------------  152 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce--------------------
Confidence            7775432    2233344567778888777643 35777777765532212222111000                    


Q ss_pred             ccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE
Q 011978          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS  377 (473)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las  377 (473)
                                                        +..+.        +                  .++.+.  -.+...
T Consensus       153 ----------------------------------~~~~~--------~------------------t~~~~d--~~~~fv  170 (404)
T KOG1409|consen  153 ----------------------------------NFETP--------A------------------SALQFD--ALYAFV  170 (404)
T ss_pred             ----------------------------------Eeecc--------C------------------CCCcee--eEEEEe
Confidence                                              00000        0                  000000  002222


Q ss_pred             EECCCcEEEE--eCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eecccccCCCEEEEEEee
Q 011978          378 ASFDKSIKLW--NGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       378 gs~d~~v~lw--d~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~  454 (473)
                      |...|.|..-  ......++..+.+|.+++.+++|.|..+.|.+|+.|..+.+||+-..+. ..++.+|.+.|..+..-+
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~  250 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ  250 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence            3233333222  2234456778999999999999999999999999999999999976544 457889999999998888


Q ss_pred             CCCEEEEEeCCCcEEecc
Q 011978          455 DGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       455 d~~~l~s~~~D~~i~~w~  472 (473)
                      --+.|.|++.||.|.+|+
T Consensus       251 ~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  251 HTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             hheeeeeccCCCeEEEEe
Confidence            889999999999999996

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.08  E-value=1e-08  Score=88.74  Aligned_cols=281  Identities=18%  Similarity=0.365  Sum_probs=164.9

Q ss_pred             ccEEEEEECCCCC--eEEEEeCCCeEEEEeCCCCceeE-----EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          109 EAVLSVAFSPDGR--QLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       109 ~~V~~~~~sp~~~--~lat~s~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      ..|+.++|.+++.  .+.....|.+|++|.+.......     ..++....+.+|..      .+.+..|-.+..     
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~vea-----  153 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEVEA-----  153 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccceeee-----
Confidence            5688899998875  35566789999999875432111     00112222333321      111111111100     


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe---EEEEecCcc-----ccEEEEEecCCC-
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHT-----LAVTCVKWGGDG-  252 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~---~~~~~~~h~-----~~v~~~~~~~~~-  252 (473)
                       .+......+|.-.|++++++.     ++..|++ +.|-.|.+|+++.-.   -+..++.+.     .-|++..|+|.. 
T Consensus       154 -~prRv~aNaHtyhiNSIS~Ns-----D~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c  226 (433)
T KOG1354|consen  154 -SPRRVYANAHTYHINSISVNS-----DKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC  226 (433)
T ss_pred             -eeeeeccccceeEeeeeeecC-----ccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc
Confidence             112233467888888887543     5556655 467889999876422   233344443     357888898764 


Q ss_pred             -eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978          253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (473)
Q Consensus       253 -~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (473)
                       .++-++..|+|++.|++...+.-...                                                     
T Consensus       227 n~f~YSSSKGtIrLcDmR~~aLCd~hs-----------------------------------------------------  253 (433)
T KOG1354|consen  227 NVFVYSSSKGTIRLCDMRQSALCDAHS-----------------------------------------------------  253 (433)
T ss_pred             cEEEEecCCCcEEEeechhhhhhcchh-----------------------------------------------------
Confidence             56667888999999988643321100                                                     


Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC-CCCceEEEeeCCc--------
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG-TTGKFVAVFRGHV--------  402 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~-~~~~~~~~~~~h~--------  402 (473)
                                +++........+..+.+--..|..+.|+++|+|+++-+. -+|++||+ ...+++.+++-|.        
T Consensus       254 ----------KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~  322 (433)
T KOG1354|consen  254 ----------KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS  322 (433)
T ss_pred             ----------hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence                      000000000001111222245788999999999998754 58999999 4566777766553        


Q ss_pred             ----cCE---EEEEEecCCCEEEEEeCCCcEEEEECCCCcee-e-------------------ccc-cc-----------
Q 011978          403 ----GPV---YQISWSADSRLLLSGSKDSTLKVWDIRTQKLK-Q-------------------DLP-GH-----------  443 (473)
Q Consensus       403 ----~~v---~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~-~-------------------~~~-~h-----------  443 (473)
                          ..|   ..++||-++.++++||..+..++|+...+... .                   ... |.           
T Consensus       323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~l  402 (433)
T KOG1354|consen  323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDAL  402 (433)
T ss_pred             HhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchh
Confidence                222   45789999999999999999999995433210 0                   000 11           


Q ss_pred             --CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          444 --ADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       444 --~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                        ...|+..+|+|..+.+|.+..++ +.+|.
T Consensus       403 df~kkilh~aWhp~en~ia~aatnn-lyif~  432 (433)
T KOG1354|consen  403 DFRKKILHTAWHPKENSIAVAATNN-LYIFQ  432 (433)
T ss_pred             hhhhHHHhhccCCccceeeeeecCc-eEEec
Confidence              11355678999999888887654 44543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.03  E-value=5.7e-07  Score=85.76  Aligned_cols=305  Identities=10%  Similarity=0.050  Sum_probs=176.6

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC-C---------CEE-EEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-N---------WVL-CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~-~---------~v~-~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      +..++.++.++.+.-+|..+++.+....-.. .         .+. .+..  ++..++.++.+|.++.+|.++|+.....
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            5677778888999999999888776653211 0         000 0111  3567888889999999999999865432


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE-----EEEEecCCCeEEEeecCCeE
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTI  263 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~l~s~~~d~~i  263 (473)
                      ...  ..+.   -.|..   ...+++.++.++.+.-+|..+++.+..........     .+.... ++.++.++.++.+
T Consensus       147 ~~~--~~~~---ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v  217 (394)
T PRK11138        147 KVA--GEAL---SRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRV  217 (394)
T ss_pred             cCC--Ccee---cCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEE
Confidence            211  1111   11211   12466778888999999999999887664321100     011111 3567778889999


Q ss_pred             EEEECCCCceeeeeeccCce-EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978          264 KVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (473)
Q Consensus       264 ~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  342 (473)
                      ...|..+|+.+......... -..+             ..               +...........+.++.++.++.+.
T Consensus       218 ~a~d~~~G~~~W~~~~~~~~~~~~~-------------~~---------------~~~~~~sP~v~~~~vy~~~~~g~l~  269 (394)
T PRK11138        218 SAVLMEQGQLIWQQRISQPTGATEI-------------DR---------------LVDVDTTPVVVGGVVYALAYNGNLV  269 (394)
T ss_pred             EEEEccCChhhheeccccCCCccch-------------hc---------------ccccCCCcEEECCEEEEEEcCCeEE
Confidence            99999988876543211000 0000             00               0000000000123566677788888


Q ss_pred             EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc-CEEEEEEecCCCEEEEEe
Q 011978          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQISWSADSRLLLSGS  421 (473)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~-~v~~v~~sp~g~~l~s~s  421 (473)
                      ..|...++.......+.   ...+.  .++..|..++.++.+..+|..+|+.+-....-.+ ...+...  .+.+|+.++
T Consensus       270 ald~~tG~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~  342 (394)
T PRK11138        270 ALDLRSGQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD  342 (394)
T ss_pred             EEECCCCCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe
Confidence            88876554322221111   11111  2456777788899999999999986543321111 1111112  245778889


Q ss_pred             CCCcEEEEECCCCceeecccccCCCEEE-EEEeeCCCEEEEEeCCCcEEecc
Q 011978          422 KDSTLKVWDIRTQKLKQDLPGHADEVFA-VDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       422 ~Dg~i~iwd~~~~~~~~~~~~h~~~i~~-l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .||.+++.|..+++.+....-....+.+ ... . +..|..++.||.+..+.
T Consensus       343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~-~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        343 SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-A-DDKLLIQARDGTVYAIT  392 (394)
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-E-CCEEEEEeCCceEEEEe
Confidence            9999999999999886554322222332 122 2 45788889999887764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.02  E-value=2e-07  Score=84.25  Aligned_cols=102  Identities=19%  Similarity=0.275  Sum_probs=80.4

Q ss_pred             cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC----cEEEEECCCCce
Q 011978          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS----TLKVWDIRTQKL  436 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg----~i~iwd~~~~~~  436 (473)
                      +.|.++..+|+|++++.+.....+-+.|+.+|.....-+...+-|+.+.|||+++++|-+-.+|    .|+++|+..++.
T Consensus       402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            4578899999999999998888888889999987666566678899999999999999887766    589999998776


Q ss_pred             eecccccCCCEEEEEEeeCCCEEEEEe
Q 011978          437 KQDLPGHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       437 ~~~~~~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      ... ....+--++-+|.||+++|.--+
T Consensus       482 y~v-TT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         482 YDV-TTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEe-cCCcccccCcccCCCCcEEEEEe
Confidence            321 11222235678999999886554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.00  E-value=5.1e-06  Score=86.38  Aligned_cols=350  Identities=17%  Similarity=0.237  Sum_probs=179.8

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCC----C---------C----------ceeEEEc------------C---
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN----T---------Q----------TPMFKCT------------G---  148 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~----~---------~----------~~~~~~~------------~---  148 (473)
                      -..+|.+++||||+..||...+++++.+-+-.    .         +          ++-..+.            .   
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~  198 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV  198 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence            34689999999999999999989888775321    0         0          0000000            0   


Q ss_pred             ---------CCCCEEEEEECCCCCeEEEEec---C---CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceE
Q 011978          149 ---------HKNWVLCIAWSADGKHLVSGSK---A---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF  213 (473)
Q Consensus       149 ---------~~~~v~~l~~s~dg~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~  213 (473)
                               +.+.-..++|-.||.++|+.+.   .   ..+++|+-+ |..... -..-.+.-..++|.|.     +..+
T Consensus       199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st-SE~v~gLe~~l~WrPs-----G~lI  271 (928)
T PF04762_consen  199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST-SEPVDGLEGALSWRPS-----GNLI  271 (928)
T ss_pred             CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec-cccCCCccCCccCCCC-----CCEE
Confidence                     2234567889999999998764   3   468999875 432111 1111122235678873     4556


Q ss_pred             EEeeC---CCcEEEEECC---CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceee--eeec-cCceE
Q 011978          214 VSASK---DGDARIWDVS---LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR--ELKG-HGHWV  284 (473)
Q Consensus       214 ~s~s~---dg~i~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~-~~~~v  284 (473)
                      ++.-.   ...|.+|.-.   .+.....+......|..+.|++|+.+++......|.+|-..+....-  .+.. ....+
T Consensus       272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~  351 (928)
T PF04762_consen  272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESV  351 (928)
T ss_pred             EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCC
Confidence            65543   3456666532   23333223345567899999999976555555569999877654321  1111 11223


Q ss_pred             EEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC--CceEEEecCCceEEEEeCCCCCCCe---eeecCc
Q 011978          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA--PERLVSGSDDFTMFLWEPAVSKQPK---TRMTGH  359 (473)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~  359 (473)
                      ..+.+++............+......     ... ......+..  ..-.+.--+..++.+-.......|.   .....-
T Consensus       352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~-----~~~-~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~  425 (928)
T PF04762_consen  352 NFVKWDPEKPLRLHVLTSNGQYEIYD-----FAW-DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL  425 (928)
T ss_pred             CceEECCCCCCEEEEEecCCcEEEEE-----EEE-EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence            33556554332211111111000000     000 000000000  0011111112223332222111110   111123


Q ss_pred             ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc--------eEEEee----------CCccCEEEEEEecCCCEEEEEe
Q 011978          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK--------FVAVFR----------GHVGPVYQISWSADSRLLLSGS  421 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~--------~~~~~~----------~h~~~v~~v~~sp~g~~l~s~s  421 (473)
                      ...|.+++|++++..+|+-..||.+.+|......        ....+.          .-...+..++|..+...++..+
T Consensus       426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (928)
T PF04762_consen  426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD  505 (928)
T ss_pred             CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence            4679999999999889999999999999854321        111111          1234578889988887766666


Q ss_pred             CC---CcEEEEECCCCc---eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEE
Q 011978          422 KD---STLKVWDIRTQK---LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK  469 (473)
Q Consensus       422 ~D---g~i~iwd~~~~~---~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~  469 (473)
                      .+   ..+.++++...+   .......-...+..+...++...++.-..||.+.
T Consensus       506 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~  559 (928)
T PF04762_consen  506 SDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVF  559 (928)
T ss_pred             cCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEE
Confidence            54   578888874322   1122222233444555555544355555566554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.00  E-value=3.6e-06  Score=76.91  Aligned_cols=252  Identities=13%  Similarity=0.099  Sum_probs=144.1

Q ss_pred             CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe-e---------CCCcEEEEECCCCeEEEEecCcc-
Q 011978          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-S---------KDGDARIWDVSLRKCVICLSGHT-  240 (473)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~-s---------~dg~i~iwd~~~~~~~~~~~~h~-  240 (473)
                      ++|.+.|..+++.....-.+.....  + .+|     ++..+..+ +         .+..|.+||..+.+.+..+.-.. 
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~sp-----Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~   98 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-VAS-----DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG   98 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce--e-ECC-----CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence            7899999888776554333322211  1 233     44455444 4         57899999999999887665211 


Q ss_pred             ------ccEEEEEecCCCe-EEEee-c-CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978          241 ------LAVTCVKWGGDGV-IYTGS-Q-DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (473)
Q Consensus       241 ------~~v~~~~~~~~~~-l~s~~-~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (473)
                            ..-...++++||. ++... . +..+.+.|+.+++.+.++.-.+.+. -+..++.                   
T Consensus        99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~-------------------  158 (352)
T TIGR02658        99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTAND-------------------  158 (352)
T ss_pred             chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCC-------------------
Confidence                  1223567788884 55443 3 7899999999999888765432111 0001100                   


Q ss_pred             HHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe----eeecCcccc-eeEEEECC-CCcEEEEEECCCcEE
Q 011978          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK----TRMTGHQQL-VNHVYFSP-DGQWVASASFDKSIK  385 (473)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~-v~~v~~sp-~g~~lasgs~d~~v~  385 (473)
                                         ....-+.|+..............    ..+.+.... ...-.|.+ +|+++..... |+|.
T Consensus       159 -------------------~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~  218 (352)
T TIGR02658       159 -------------------TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIF  218 (352)
T ss_pred             -------------------ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEE
Confidence                               01111122222221111000000    000000000 00013455 7877776665 9999


Q ss_pred             EEeCCCC-----ceEEEeeC-------CccCEEEEEEecCCCEEEEEeC----------CCcEEEEECCCCceeeccccc
Q 011978          386 LWNGTTG-----KFVAVFRG-------HVGPVYQISWSADSRLLLSGSK----------DSTLKVWDIRTQKLKQDLPGH  443 (473)
Q Consensus       386 lwd~~~~-----~~~~~~~~-------h~~~v~~v~~sp~g~~l~s~s~----------Dg~i~iwd~~~~~~~~~~~~h  443 (473)
                      +.|+...     +....+..       ..+...-++++|+++.+.....          .+.|.++|..+++.+..+.- 
T Consensus       219 ~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-  297 (352)
T TIGR02658       219 QIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-  297 (352)
T ss_pred             EEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-
Confidence            9995432     22222211       2234455999999998887431          24799999999998887763 


Q ss_pred             CCCEEEEEEeeCCC-EEEEEe-CCCcEEecc
Q 011978          444 ADEVFAVDWSPDGE-KVASGG-KDRVLKLWM  472 (473)
Q Consensus       444 ~~~i~~l~~s~d~~-~l~s~~-~D~~i~~w~  472 (473)
                      ...+..++++||++ +|.+.. .++.|.+.+
T Consensus       298 G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       298 GHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            34789999999999 777665 567777654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=1.3e-06  Score=83.92  Aligned_cols=350  Identities=21%  Similarity=0.223  Sum_probs=193.4

Q ss_pred             ccccccCCcccEEEEEECCCC------------CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECC---CC-C
Q 011978          100 CSATIAGHTEAVLSVAFSPDG------------RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA---DG-K  163 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~------------~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~---dg-~  163 (473)
                      ....++-|...|+.+.|.|-.            -+||++.-.|.|.+||.........+..|.+++..++|-+   +. .
T Consensus        47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd  126 (1062)
T KOG1912|consen   47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD  126 (1062)
T ss_pred             hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh
Confidence            455677899999999998732            2466777789999999988877777788889999999865   34 4


Q ss_pred             eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe---------------------------
Q 011978          164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA---------------------------  216 (473)
Q Consensus       164 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~---------------------------  216 (473)
                      .|++-.....+.+|+..+|......-.+| ....++.+.|...    +.|..-                           
T Consensus       127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~----rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~  201 (1062)
T KOG1912|consen  127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDS----RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT  201 (1062)
T ss_pred             eeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCc----ceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence            56666777899999999987654322222 2233344444211    111111                           


Q ss_pred             -----------------------------------------------eCCCcEEEEECCCCeEEEEecCccccEEEEEec
Q 011978          217 -----------------------------------------------SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG  249 (473)
Q Consensus       217 -----------------------------------------------s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  249 (473)
                                                                     ...+.+.++|++-..++....-....+.-+.|-
T Consensus       202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl  281 (1062)
T KOG1912|consen  202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL  281 (1062)
T ss_pred             cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence                                                           122233333333333333332223333445555


Q ss_pred             CCC---eEEEeecCCeEEEEECCCCcee-----eeee-ccCceEEEEEecccceeeeccccCCCc-----ccCCHH-HHH
Q 011978          250 GDG---VIYTGSQDCTIKVWETTQGKLI-----RELK-GHGHWVNSLALSTEYALRTGAFDHTGK-----QYSSPE-EMK  314 (473)
Q Consensus       250 ~~~---~l~s~~~d~~i~~wd~~~~~~~-----~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~  314 (473)
                      |++   .|++...||.+.+|-.+.-...     ..+. .-...+..+....+.....+..-+...     .+...+ .+.
T Consensus       282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w  361 (1062)
T KOG1912|consen  282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW  361 (1062)
T ss_pred             cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence            554   5889999999999964331100     0110 001122222222222111111111100     000000 000


Q ss_pred             HHHHhhhhcc------------------cCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEEC-------
Q 011978          315 KAALERYNKI------------------KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-------  369 (473)
Q Consensus       315 ~~~~~~~~~~------------------~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s-------  369 (473)
                      .....+....                  .......+..-++||                  +|.....+....       
T Consensus       362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg------------------~h~sGs~~~~~~p~p~~t~  423 (1062)
T KOG1912|consen  362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDG------------------SHSSGSTCVRMRPMPELTK  423 (1062)
T ss_pred             hhhcCCcCcccccccccccccccccCceeehhhccccchhhcC------------------CCCCCceeeecccCcccce
Confidence            0000000000                  000001122222332                  232222222222       


Q ss_pred             ----CCC-------cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEE---------EEeCCCcEEEE
Q 011978          370 ----PDG-------QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL---------SGSKDSTLKVW  429 (473)
Q Consensus       370 ----p~g-------~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~---------s~s~Dg~i~iw  429 (473)
                          |.|       .++|.|...|+|.++|+.++.....+..|.+.|.++.|--...++-         +++--+.+.+-
T Consensus       424 ~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vt  503 (1062)
T KOG1912|consen  424 VENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVT  503 (1062)
T ss_pred             eecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEE
Confidence                222       3688999999999999999998888999999999999976544332         22223457788


Q ss_pred             ECCCCcee--ecccc-cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          430 DIRTQKLK--QDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       430 d~~~~~~~--~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+++|..+  ..+++ ...+|..+..|.-|+||+..=.|.-+-+|.
T Consensus       504 dLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd  549 (1062)
T KOG1912|consen  504 DLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWD  549 (1062)
T ss_pred             EcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHh
Confidence            99987543  22222 346899999999999999998888888875

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.94  E-value=1.8e-08  Score=89.06  Aligned_cols=161  Identities=18%  Similarity=0.314  Sum_probs=111.7

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCce---eEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCcc
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKP  184 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~  184 (473)
                      ...+..+++++++|.+..+....++++....+   +.....-...-.++.|-.+......+...   ..+.+|....+..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            44566788888999888888877777654332   11111112223344444445555544444   4556666554433


Q ss_pred             ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecCccccEEEEEecCCCeEEEeecCCeE
Q 011978          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDGVIYTGSQDCTI  263 (473)
Q Consensus       185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~l~s~~~d~~i  263 (473)
                        .++-||-..+..+.|+|     +...++++..|..||+=....-..+.. .-||..-|..++..++..|++|+.|+++
T Consensus       145 --~~~lGhvSml~dVavS~-----D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tl  217 (390)
T KOG3914|consen  145 --EPILGHVSMLLDVAVSP-----DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTL  217 (390)
T ss_pred             --chhhhhhhhhheeeecC-----CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcE
Confidence              45789999999999987     457899999999999976654333333 3489999999999888889999999999


Q ss_pred             EEEECCCCceeeeee
Q 011978          264 KVWETTQGKLIRELK  278 (473)
Q Consensus       264 ~~wd~~~~~~~~~~~  278 (473)
                      ++||+++|+.+.++.
T Consensus       218 r~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  218 RLWDITSGKLLDTCD  232 (390)
T ss_pred             EEEecccCCcccccc
Confidence            999999999876553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.94  E-value=4.4e-06  Score=73.59  Aligned_cols=257  Identities=14%  Similarity=0.184  Sum_probs=152.4

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEeC---CCeEEEEeCCC--CceeEE--EcCCCCCEEEEEECCCCCeEEEEecC-CeEE
Q 011978          104 IAGHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNT--QTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKA-GELQ  175 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~s~---d~~i~iwd~~~--~~~~~~--~~~~~~~v~~l~~s~dg~~l~s~~~d-g~i~  175 (473)
                      +..+.+.++-++|+|+.++|.++-.   +|.|.-|.+..  ++..+.  ......+-..++++++|++++++.+. |.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            3456677888999999999988754   57788887764  432221  11122333678999999999998875 7888


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-E
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I  254 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l  254 (473)
                      ++-++....+.        .+..+..+                        ...+-...+-.+|   +.+..++|++. |
T Consensus       115 v~p~~~dG~l~--------~~v~~~~h------------------------~g~~p~~rQ~~~h---~H~a~~tP~~~~l  159 (346)
T COG2706         115 VYPLQADGSLQ--------PVVQVVKH------------------------TGSGPHERQESPH---VHSANFTPDGRYL  159 (346)
T ss_pred             EEEcccCCccc--------cceeeeec------------------------CCCCCCccccCCc---cceeeeCCCCCEE
Confidence            88775421110        01110000                        0000000111122   45677888884 4


Q ss_pred             EEee-cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          255 YTGS-QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       255 ~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      ++.+ .-..|.+|++..|++...-..                                                   .+ 
T Consensus       160 ~v~DLG~Dri~~y~~~dg~L~~~~~~---------------------------------------------------~v-  187 (346)
T COG2706         160 VVPDLGTDRIFLYDLDDGKLTPADPA---------------------------------------------------EV-  187 (346)
T ss_pred             EEeecCCceEEEEEcccCcccccccc---------------------------------------------------cc-
Confidence            4433 223677888776654221000                                                   00 


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCC-ceEEEeeC---------Cc
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG-KFVAVFRG---------HV  402 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~-~~~~~~~~---------h~  402 (473)
                                              ......+.|+|+|++++..... .+++|-+|..... ..+..++.         ..
T Consensus       188 ------------------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         188 ------------------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT  243 (346)
T ss_pred             ------------------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence                                    0112356789999999887665 4889999988763 22222221         13


Q ss_pred             cCEEEEEEecCCCEEEEEeC-CCcEEEEECCC--Cce--eecccccCCCEEEEEEeeCCCEEEEEeCCC-cEEec
Q 011978          403 GPVYQISWSADSRLLLSGSK-DSTLKVWDIRT--QKL--KQDLPGHADEVFAVDWSPDGEKVASGGKDR-VLKLW  471 (473)
Q Consensus       403 ~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~--~~~--~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~-~i~~w  471 (473)
                      .+..++..+|||++|.++.. ...|-+|.+..  +++  ......+...-....++++|++|+.+..|+ .|.+|
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            46788999999999987743 33688887753  332  222222333346788999999999988764 45554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.94  E-value=3.5e-09  Score=63.69  Aligned_cols=39  Identities=51%  Similarity=0.993  Sum_probs=36.9

Q ss_pred             CceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978          392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD  430 (473)
Q Consensus       392 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd  430 (473)
                      |+++.++++|.++|++++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=3e-09  Score=97.52  Aligned_cols=200  Identities=15%  Similarity=0.284  Sum_probs=133.2

Q ss_pred             EEEecCccccEEEEE-ecCCCeEEEeecCCeEEEEECCCC-------ceeeeeeccCceEEEEEecccceeeeccccCCC
Q 011978          233 VICLSGHTLAVTCVK-WGGDGVIYTGSQDCTIKVWETTQG-------KLIRELKGHGHWVNSLALSTEYALRTGAFDHTG  304 (473)
Q Consensus       233 ~~~~~~h~~~v~~~~-~~~~~~l~s~~~d~~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  304 (473)
                      +..+.||...|..+. .+.++.+++++.|+++++|.++..       .+..+...|..+|..+.+-.+            
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~------------  795 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD------------  795 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec------------
Confidence            345678988887765 345567999999999999987632       233445667777766654332            


Q ss_pred             cccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee----cCcccceeEEEECCCCcEEEEE-E
Q 011978          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNHVYFSPDGQWVASA-S  379 (473)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~v~~sp~g~~lasg-s  379 (473)
                                                .-...+.|+-+.+||+..+.......    .+....|.++- +-+...+..| +
T Consensus       796 --------------------------lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcs  848 (1034)
T KOG4190|consen  796 --------------------------LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCS  848 (1034)
T ss_pred             --------------------------cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeecc
Confidence                                      11234568999999986543221110    11112233322 1134444444 7


Q ss_pred             CCCcEEEEeCCCCceEEEee-----CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEee
Q 011978          380 FDKSIKLWNGTTGKFVAVFR-----GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       380 ~d~~v~lwd~~~~~~~~~~~-----~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~  454 (473)
                      ...+|+++|.+.++....++     +..+.+.+++..|.|+.+|.+=..|.|.+.|.++|+.+..+..-.-....++ .|
T Consensus       849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-ap  927 (1034)
T KOG4190|consen  849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-AP  927 (1034)
T ss_pred             chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-Cc
Confidence            78899999999987766554     3446689999999999999999999999999999998876665444444554 34


Q ss_pred             CCCEEEEEeCCCcEEe-cc
Q 011978          455 DGEKVASGGKDRVLKL-WM  472 (473)
Q Consensus       455 d~~~l~s~~~D~~i~~-w~  472 (473)
                      ..+.|+....|.++.+ |.
T Consensus       928 sdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  928 SDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             hhHHHHhhcccceeEeeeh
Confidence            4567777777777777 65

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=7.3e-07  Score=82.30  Aligned_cols=280  Identities=15%  Similarity=0.284  Sum_probs=143.5

Q ss_pred             ccEEEEEECCCCCeEEEEeC-----------CCeEEEEeCCCCceeEEEcC--CCCCEE-EEEECCCCCeEEEEecCCeE
Q 011978          109 EAVLSVAFSPDGRQLASGSG-----------DTTVRLWDLNTQTPMFKCTG--HKNWVL-CIAWSADGKHLVSGSKAGEL  174 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~-----------d~~i~iwd~~~~~~~~~~~~--~~~~v~-~l~~s~dg~~l~s~~~dg~i  174 (473)
                      ..|.-+.|||..++|+|=+.           ...+.|||+.+|.....+..  ....++ -..||.|++++|.-.. ..|
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si  328 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI  328 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence            34788999999999998642           25799999999987665544  222232 3579999999987655 678


Q ss_pred             EEeeCCCCccccccCCCcC---CcEEEEEeceeccCCCCceEEEeeC-----CCcEEEEECCCCeEEEEecCccccEEEE
Q 011978          175 QCWDPQTGKPSGNPLSGHK---KWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVSLRKCVICLSGHTLAVTCV  246 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~~~~~~~s~s~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~~  246 (473)
                      .||+...-..    +....   ..|....|+|..     ..++-=+.     -..+.+..+.+++.+.+..-|...=-.+
T Consensus       329 sIyEtpsf~l----ld~Kslki~gIr~FswsP~~-----~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckL  399 (698)
T KOG2314|consen  329 SIYETPSFML----LDKKSLKISGIRDFSWSPTS-----NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKL  399 (698)
T ss_pred             EEEecCceee----ecccccCCccccCcccCCCc-----ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEE
Confidence            8887644211    11111   234555677742     12221110     1123344444444443332222111224


Q ss_pred             EecCCCeEEEeecC-----------CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978          247 KWGGDGVIYTGSQD-----------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (473)
Q Consensus       247 ~~~~~~~l~s~~~d-----------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (473)
                      -|..+|..++---|           ..+-|+.++         ...-+|..+.+...  +...++++.+..+        
T Consensus       400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir---------eKdIpve~velke~--vi~FaWEP~gdkF--------  460 (698)
T KOG2314|consen  400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR---------EKDIPVEVVELKES--VIAFAWEPHGDKF--------  460 (698)
T ss_pred             EeccCCcEEEEEEEeeccccccceEeeEEEEEee---------ccCCCceeeecchh--eeeeeeccCCCeE--------
Confidence            45555432221111           112222222         22222222222111  1111222222111        


Q ss_pred             HHHhhhhcccCCCCceEEEec-CCceEEEEeCCC-CCCCeeeecCcccceeEEEECCCCcEEEEEE---CCCcEEEEeCC
Q 011978          316 AALERYNKIKGNAPERLVSGS-DDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASAS---FDKSIKLWNGT  390 (473)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs---~d~~v~lwd~~  390 (473)
                                     .+++|- ...++.+|.+.. ...+.....-.....+.+.|+|.|++++.+.   ..|.+.++|..
T Consensus       461 ---------------~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  461 ---------------AVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             ---------------EEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence                           012221 133456665542 2221111111124567899999999998764   46889999987


Q ss_pred             CCceEEEe-eCCccCEEEEEEecCCCEEEEEeC------CCcEEEEECCC
Q 011978          391 TGKFVAVF-RGHVGPVYQISWSADSRLLLSGSK------DSTLKVWDIRT  433 (473)
Q Consensus       391 ~~~~~~~~-~~h~~~v~~v~~sp~g~~l~s~s~------Dg~i~iwd~~~  433 (473)
                      -..+..+- ..| ...+.+.|.|.|+|+++++.      |.--+||++..
T Consensus       526 ~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  526 YADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             hhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            43322221 223 35678999999999999886      34456777654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.90  E-value=1.7e-06  Score=91.57  Aligned_cols=143  Identities=13%  Similarity=0.160  Sum_probs=95.7

Q ss_pred             ceEEEecCCceEEEEeCCCCCCCee-------eecC------cccceeEEEECCCCcEE-EEEECCCcEEEEeCCCCceE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKT-------RMTG------HQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFV  395 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~-------~~~~------~~~~v~~v~~sp~g~~l-asgs~d~~v~lwd~~~~~~~  395 (473)
                      ..+++.+.++.|++||.........       ...+      .-.....++++|+|++| ++-+.++.|++||+.++...
T Consensus       696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~  775 (1057)
T PLN02919        696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR  775 (1057)
T ss_pred             eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            3456667778888888643321000       0001      11245679999999854 45556789999999876532


Q ss_pred             EEeeC-------------C--------ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc-------------c
Q 011978          396 AVFRG-------------H--------VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-------------P  441 (473)
Q Consensus       396 ~~~~~-------------h--------~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-------------~  441 (473)
                      ....+             +        ......++++++|+.+++-+.++.|++||..++......             .
T Consensus       776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~  855 (1057)
T PLN02919        776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALK  855 (1057)
T ss_pred             EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccc
Confidence            11100             0        112358999999998888888999999999876654221             1


Q ss_pred             ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          442 GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       442 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +.-.....++++++|+.+++-+.+++|++|+
T Consensus       856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        856 AQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             cccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            1122467899999999999999999999986

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=1.9e-07  Score=88.51  Aligned_cols=266  Identities=15%  Similarity=0.268  Sum_probs=158.2

Q ss_pred             CCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc--------------ccccCCCcCCcEEEEEeceeccCCCCceEEEe
Q 011978          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--------------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSA  216 (473)
Q Consensus       151 ~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~  216 (473)
                      ....|++|+.+..+|++|+.||.+++..+.+...              ..+.+.||+..|.-+.|+..     ...+-+.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-----~QKLTtS   89 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-----NQKLTTS   89 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-----ccccccc
Confidence            3478999999999999999999999998764221              23567899999999999763     3467777


Q ss_pred             eCCCcEEEEECCCCeEEEEe--cCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCcee-eeeeccCceEEEEEeccc
Q 011978          217 SKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI-RELKGHGHWVNSLALSTE  292 (473)
Q Consensus       217 s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~  292 (473)
                      ..+|.|.+|-+-.+.-...+  ......|.+++|+.|| .+...-.||.|.+=.+..++.. +.+++  .....+.++++
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D  167 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSED  167 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeeccc
Confidence            88999999987654322111  1234567899999888 4777778888877655433221 11221  11122223332


Q ss_pred             ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC---ee-------eecCcccc
Q 011978          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KT-------RMTGHQQL  362 (473)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~-------~~~~~~~~  362 (473)
                      ...                                    ++.+-..|.+.++|.......   ..       .+......
T Consensus       168 ~~~------------------------------------~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~k  211 (1189)
T KOG2041|consen  168 LEQ------------------------------------ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTK  211 (1189)
T ss_pred             HHH------------------------------------HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcc
Confidence            111                                    111122233334432111000   00       00000001


Q ss_pred             eeEE--------EECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---------
Q 011978          363 VNHV--------YFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSKDS---------  424 (473)
Q Consensus       363 v~~v--------~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---------  424 (473)
                      +-.+        -.-||...||.+-..|.+++-.-.+. .++..-.+  -.+....|+++|..||.++.|.         
T Consensus       212 ia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n  289 (1189)
T KOG2041|consen  212 IAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSN  289 (1189)
T ss_pred             ccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccc
Confidence            1112        12468889999999999888754433 23222222  4578899999999999988753         


Q ss_pred             cEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978          425 TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG  462 (473)
Q Consensus       425 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~  462 (473)
                      .|.+|.. -|+...+++-....|++++|-..|-.+|-+
T Consensus       290 ~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  290 KVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             eEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence            2344432 245556666666789999998777665543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=2.1e-06  Score=81.76  Aligned_cols=72  Identities=14%  Similarity=0.114  Sum_probs=47.7

Q ss_pred             cEEEEEECCCCCe-EEEEeC---CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe-cC--CeEEEeeCCCC
Q 011978          110 AVLSVAFSPDGRQ-LASGSG---DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KA--GELQCWDPQTG  182 (473)
Q Consensus       110 ~V~~~~~sp~~~~-lat~s~---d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~d--g~i~iwd~~~~  182 (473)
                      ......|+|||+. ++..+.   +..|.++|+.+++..... ...+......|+|||+.|+... .+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778999999985 664443   357899999887654332 3455567788999998876543 23  34555555443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.88  E-value=2.1e-06  Score=81.90  Aligned_cols=263  Identities=11%  Similarity=0.051  Sum_probs=152.0

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEE
Q 011978          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG  198 (473)
Q Consensus       119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  198 (473)
                      ++..++.++.++.+.-+|.++++.+.+.........+...  .+..++.+..++.+..+|.++|+...............
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            3566777888999999999999887765432211111111  24567778889999999999998654321110000000


Q ss_pred             EEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc----c------cE-EEEEecCCCeEEEeecCCeEEEEE
Q 011978          199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT----L------AV-TCVKWGGDGVIYTGSQDCTIKVWE  267 (473)
Q Consensus       199 i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~----~------~v-~~~~~~~~~~l~s~~~d~~i~~wd  267 (473)
                      ..-.|..   ....++.++.++.+...|..+++.+....-..    .      .+ .+... .++.++.++.++.+.-+|
T Consensus       197 ~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~g~l~ald  272 (394)
T PRK11138        197 GESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAYNGNLVALD  272 (394)
T ss_pred             CCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEcCCeEEEEE
Confidence            0011211   12356667788889888988887654432100    0      00 01111 256788888899999999


Q ss_pred             CCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (473)
Q Consensus       268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  347 (473)
                      ..+|+.+........  ..+.                                      ...+.++.++.++.+...|..
T Consensus       273 ~~tG~~~W~~~~~~~--~~~~--------------------------------------~~~~~vy~~~~~g~l~ald~~  312 (394)
T PRK11138        273 LRSGQIVWKREYGSV--NDFA--------------------------------------VDGGRIYLVDQNDRVYALDTR  312 (394)
T ss_pred             CCCCCEEEeecCCCc--cCcE--------------------------------------EECCEEEEEcCCCeEEEEECC
Confidence            999987654321100  0000                                      012356667778888888875


Q ss_pred             CCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE-EEEecCCCEEEEEeCCCcE
Q 011978          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ-ISWSADSRLLLSGSKDSTL  426 (473)
Q Consensus       348 ~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~-v~~sp~g~~l~s~s~Dg~i  426 (473)
                      .++..............+..+  .+.+|+.++.||.+...|..+|+.+...+-....+.+ ..+  .+..|+.++.||.+
T Consensus       313 tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l  388 (394)
T PRK11138        313 GGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTV  388 (394)
T ss_pred             CCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceE
Confidence            543211111000011111112  2567788899999999999999988776543333322 122  34578888999999


Q ss_pred             EEEEC
Q 011978          427 KVWDI  431 (473)
Q Consensus       427 ~iwd~  431 (473)
                      +.++.
T Consensus       389 ~~~~~  393 (394)
T PRK11138        389 YAITR  393 (394)
T ss_pred             EEEeC
Confidence            88764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.87  E-value=6e-06  Score=70.55  Aligned_cols=144  Identities=19%  Similarity=0.229  Sum_probs=86.6

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEeCCCC--ceeEEEcCCC---CCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          114 VAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHK---NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       114 ~~~sp~~~~lat~s~d~~i~iwd~~~~--~~~~~~~~~~---~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      ++.+++|+.||.- .|..|.|=..+..  ..+.+++.++   -.=.-++||||+..||.+...|+|+++|+.........
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~   81 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP   81 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence            5778899988875 4667777654432  1222332222   22357999999999999999999999998753321110


Q ss_pred             -----CCCcCCcEEEEEeceeccCCC-CceEEEeeCCCcEEEEECCCC-----eEEE--EecC-ccccEEEEEecCCC-e
Q 011978          189 -----LSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLR-----KCVI--CLSG-HTLAVTCVKWGGDG-V  253 (473)
Q Consensus       189 -----~~~~~~~v~~i~~~~~~~~~~-~~~~~s~s~dg~i~iwd~~~~-----~~~~--~~~~-h~~~v~~~~~~~~~-~  253 (473)
                           ...-...|.++.|.+...+.. ...++....+|.++-+-+..+     +...  .+.. +...|.++.+++.. +
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L  161 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL  161 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence                 111234566666665443322 235677777887777765321     1122  2222 36689999999875 4


Q ss_pred             EEEee
Q 011978          254 IYTGS  258 (473)
Q Consensus       254 l~s~~  258 (473)
                      |+.|+
T Consensus       162 LlVgG  166 (282)
T PF15492_consen  162 LLVGG  166 (282)
T ss_pred             EEEec
Confidence            44444

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.80  E-value=1.2e-08  Score=61.41  Aligned_cols=37  Identities=54%  Similarity=0.997  Sum_probs=34.5

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEe
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD  136 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd  136 (473)
                      +..++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=5.6e-06  Score=78.86  Aligned_cols=181  Identities=15%  Similarity=0.113  Sum_probs=107.4

Q ss_pred             cEEEEEecCCCe--EEEeec---CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHH
Q 011978          242 AVTCVKWGGDGV--IYTGSQ---DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (473)
Q Consensus       242 ~v~~~~~~~~~~--l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (473)
                      ......|++||.  ++..+.   +..|.++|+.+++...... .........++|+...                     
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~---------------------  246 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK---------------------  246 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE---------------------
Confidence            567789999883  443332   4578899998876543322 2233334445554311                     


Q ss_pred             HHhhhhcccCCCCceEEEecC--CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-C--cEEEEeCCC
Q 011978          317 ALERYNKIKGNAPERLVSGSD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-K--SIKLWNGTT  391 (473)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-~--~v~lwd~~~  391 (473)
                                    .+++.+.  +..+++++.....  ...+..+........|+|||+.|+..+.. +  .|.+.|+.+
T Consensus       247 --------------la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        247 --------------LLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             --------------EEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence                          1222222  3456666754432  23333333323456899999988877643 2  578888888


Q ss_pred             CceEEEeeCCccCEEEEEEecCCCEEEEEeCC---------CcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978          392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---------STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG  462 (473)
Q Consensus       392 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~  462 (473)
                      ++.......  +. ....|||||++|+..+..         ..|.+.|+.++... .+.... ......|+|||+.|+..
T Consensus       311 g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~-~~~~p~~SPDG~~I~f~  385 (419)
T PRK04043        311 GSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANG-VNQFPRFSSDGGSIMFI  385 (419)
T ss_pred             CCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCC-CcCCeEECCCCCEEEEE
Confidence            776443321  11 124899999988876654         26888888877543 333222 23357899999988766


Q ss_pred             eCC
Q 011978          463 GKD  465 (473)
Q Consensus       463 ~~D  465 (473)
                      +.+
T Consensus       386 ~~~  388 (419)
T PRK04043        386 KYL  388 (419)
T ss_pred             Ecc
Confidence            543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.77  E-value=8.5e-06  Score=71.96  Aligned_cols=224  Identities=19%  Similarity=0.154  Sum_probs=133.7

Q ss_pred             CCeEEEEeCCCCceeEEEcCC--CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC-CcEEEEEeceec
Q 011978          129 DTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVH  205 (473)
Q Consensus       129 d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~  205 (473)
                      +|+|..||..+++.+....--  .....+. ..+++..+++++.++.|+.||..+|+.......... ...      |. 
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~------~~-   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA------PV-   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG------EE-
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce------ee-
Confidence            688999999999888766421  1222221 223567888889999999999999986432211110 000      10 


Q ss_pred             cCCCCceEEEeeCCCcEEEEECCCCeEEEEe-cCc----c-ccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeec
Q 011978          206 LNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGH----T-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       206 ~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-~~h----~-~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  279 (473)
                        .....++.++.++.+..+|..+++.+... ...    . .......+. ++.++.+..++.|..+|..+|+.+.....
T Consensus        74 --~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   74 --VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             --EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             --ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence              12346677778889999999999988773 322    1 111122223 45678888899999999999988766543


Q ss_pred             cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (473)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  359 (473)
                      ......                                            ..+.                     .    
T Consensus       151 ~~~~~~--------------------------------------------~~~~---------------------~----  161 (238)
T PF13360_consen  151 GEPRGS--------------------------------------------SPIS---------------------S----  161 (238)
T ss_dssp             STT-SS----------------------------------------------EE---------------------E----
T ss_pred             CCCCCC--------------------------------------------ccee---------------------e----
Confidence            211000                                            0000                     0    


Q ss_pred             ccceeEEEECCCCcEEEEEECCCc-EEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978          360 QQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK  437 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d~~-v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~  437 (473)
                      ...+..-.+..++ .+..++.++. +.+ |..+++.+-...  ...+.. ...+++..|+.++.++.|..||+++++.+
T Consensus       162 ~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  162 FSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             ETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             ecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            0001111112234 5556666664 555 999998654322  222222 13567788888889999999999998764

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.74  E-value=5.5e-06  Score=69.78  Aligned_cols=233  Identities=10%  Similarity=0.031  Sum_probs=132.5

Q ss_pred             CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc
Q 011978          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL  241 (473)
Q Consensus       162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~  241 (473)
                      -.+|+.|+..|.+.+|...+.+........|...|+-+   .- .......+..++.|.++++.+++.+..-....-...
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~---~r-~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~  159 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV---KR-YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNL  159 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhh---hh-hcccccceeeccCCcceeEEEEecCcccceeecccc
Confidence            35789999999999999876543222222222211111   00 001112456788899999988765433222211123


Q ss_pred             cEEEEEecCCCe-EEEeecCCeEEEEECCCCce-eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978          242 AVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (473)
Q Consensus       242 ~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (473)
                      .+.++.+++++. +++.+.-..|..|.+..... +...        .++-..+..+.. +                    
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~--------~~a~t~D~gF~~-S--------------------  210 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI--------YEAPTSDHGFYN-S--------------------  210 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee--------EecccCCCceee-e--------------------
Confidence            377888998885 55667777888887654321 1100        001011111100 0                    


Q ss_pred             hhhcccCCCCceEEEecCCceEEEEeCCCCCCCee----eecCcccceeEEEECCCCc--EEEEEECCCcEEEEeCCCCc
Q 011978          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT----RMTGHQQLVNHVYFSPDGQ--WVASASFDKSIKLWNGTTGK  393 (473)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~v~~v~~sp~g~--~lasgs~d~~v~lwd~~~~~  393 (473)
                           .......++++..||++.+||++....+..    .-..|.+.++.+.|+|.|.  +|...-.=+.+.+-|+++++
T Consensus       211 -----~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  211 -----FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             -----eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence                 011245789999999999999876544322    2345888999999998664  44444445689999999886


Q ss_pred             eEEEee-------CCc-cCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          394 FVAVFR-------GHV-GPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       394 ~~~~~~-------~h~-~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      ....+.       .|. ..|..-.|+.++.-+.+.+.+ .+.-|++.+
T Consensus       286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             eeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence            544332       232 236666677666555544433 245555544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.74  E-value=3e-07  Score=81.54  Aligned_cols=103  Identities=30%  Similarity=0.432  Sum_probs=81.5

Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe-eCCccCEEEEEEecC
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQISWSAD  413 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~  413 (473)
                      .++...+.+|....  .....+.||-.-+..|+++||+++|+++..|..||+-.+...-.+..| -||...|..++.-++
T Consensus       128 agD~~~~di~s~~~--~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~  205 (390)
T KOG3914|consen  128 AGDVYSFDILSADS--GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN  205 (390)
T ss_pred             cCCceeeeeecccc--cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence            44555666666543  444567899999999999999999999999999999877655444443 479999999998654


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeecc
Q 011978          414 SRLLLSGSKDSTLKVWDIRTQKLKQDL  440 (473)
Q Consensus       414 g~~l~s~s~Dg~i~iwd~~~~~~~~~~  440 (473)
                       +.|+++|.|+++++||+.+++.+.++
T Consensus       206 -~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  206 -YLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             -ceeeecCCCCcEEEEecccCCccccc
Confidence             56999999999999999998876543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.70  E-value=0.00011  Score=65.13  Aligned_cols=216  Identities=18%  Similarity=0.189  Sum_probs=125.7

Q ss_pred             ceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEec-CCCeEEEeecCCeEEEEECCCCceeeeeec-----cCceE
Q 011978          211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLIRELKG-----HGHWV  284 (473)
Q Consensus       211 ~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-----~~~~v  284 (473)
                      ..+.+--..+.|..||..+++........   ...+.+. +++.++.+..++. .++|..+++.......     .....
T Consensus        13 ~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~   88 (246)
T PF08450_consen   13 RLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRP   88 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCC
Confidence            34555556788888988887665422222   4555666 6788877776555 4559888755433332     23455


Q ss_pred             EEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccccee
Q 011978          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (473)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  364 (473)
                      +.+++.++..+..+........                            ....+.+..++.. .  ....+...-...+
T Consensus        89 ND~~vd~~G~ly~t~~~~~~~~----------------------------~~~~g~v~~~~~~-~--~~~~~~~~~~~pN  137 (246)
T PF08450_consen   89 NDVAVDPDGNLYVTDSGGGGAS----------------------------GIDPGSVYRIDPD-G--KVTVVADGLGFPN  137 (246)
T ss_dssp             EEEEE-TTS-EEEEEECCBCTT----------------------------CGGSEEEEEEETT-S--EEEEEEEEESSEE
T ss_pred             ceEEEcCCCCEEEEecCCCccc----------------------------cccccceEEECCC-C--eEEEEecCccccc
Confidence            6666666543322111100000                            0000445555543 1  1122222234578


Q ss_pred             EEEECCCCcEEE-EEECCCcEEEEeCCCCc--e-----EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 011978          365 HVYFSPDGQWVA-SASFDKSIKLWNGTTGK--F-----VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL  436 (473)
Q Consensus       365 ~v~~sp~g~~la-sgs~d~~v~lwd~~~~~--~-----~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~  436 (473)
                      .++|+|+++.|. +-+..+.|..+++....  .     ...+....+..-.+++..+|++.++....+.|.++|.. ++.
T Consensus       138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~  216 (246)
T PF08450_consen  138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL  216 (246)
T ss_dssp             EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred             ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE
Confidence            899999998776 55667788888875322  1     11222222347889999999988887788999999988 777


Q ss_pred             eecccccCCCEEEEEEe-eCCCEEEEE
Q 011978          437 KQDLPGHADEVFAVDWS-PDGEKVASG  462 (473)
Q Consensus       437 ~~~~~~h~~~i~~l~~s-~d~~~l~s~  462 (473)
                      +..+.-....+++++|. ++.+.|...
T Consensus       217 ~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  217 LREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             EEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            66555444589999994 666655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.68  E-value=0.00011  Score=65.30  Aligned_cols=217  Identities=17%  Similarity=0.216  Sum_probs=130.3

Q ss_pred             EEEECC-CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE
Q 011978          155 CIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV  233 (473)
Q Consensus       155 ~l~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~  233 (473)
                      ++.|.+ ++.++++--..+.|+.|+..++........+    ..++.+..     ....++.+... .+.++|..+++..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~-----~~g~l~v~~~~-~~~~~d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDR-----PDGRLYVADSG-GIAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEEC-----TTSEEEEEETT-CEEEEETTTTEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEc-----cCCEEEEEEcC-ceEEEecCCCcEE
Confidence            567887 5655566557899999999887654322222    45555442     12456666654 4555598888654


Q ss_pred             EEec----C-ccccEEEEEecCCCeEEEeecC---------CeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978          234 ICLS----G-HTLAVTCVKWGGDGVIYTGSQD---------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (473)
Q Consensus       234 ~~~~----~-h~~~v~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (473)
                      ....    . .......++++++|.++.+...         |.+..++.. ++. ..+...-...+.++++++..     
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~-----  146 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGK-----  146 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSS-----
T ss_pred             EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcch-----
Confidence            3332    2 3456788999999976655432         446666655 332 22222223345566655421     


Q ss_pred             ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC-C--eee---ecCcccceeEEEECCCCc
Q 011978          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-P--KTR---MTGHQQLVNHVYFSPDGQ  373 (473)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~--~~~---~~~~~~~v~~v~~sp~g~  373 (473)
                                                    ..+++-+..+.|..++...... .  ...   +.......-.+++..+|+
T Consensus       147 ------------------------------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~  196 (246)
T PF08450_consen  147 ------------------------------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN  196 (246)
T ss_dssp             ------------------------------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred             ------------------------------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence                                          1244666677777777643332 1  111   122223467899999999


Q ss_pred             EEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe-cCCCEEEE
Q 011978          374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLS  419 (473)
Q Consensus       374 ~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~g~~l~s  419 (473)
                      +.++....+.|.++|.+ |+.+..+......+++++|. ++.+.|..
T Consensus       197 l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  197 LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred             EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence            88888888999999987 88888777665689999994 66555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.68  E-value=6.7e-05  Score=66.27  Aligned_cols=236  Identities=17%  Similarity=0.175  Sum_probs=125.4

Q ss_pred             EEEECC-CCCeEEEEeCCC-eEEEEeCCCCceeEEEcCCCCCE--EEEEECCCCCeEEEEe-----cCCeEEEeeCCCCc
Q 011978          113 SVAFSP-DGRQLASGSGDT-TVRLWDLNTQTPMFKCTGHKNWV--LCIAWSADGKHLVSGS-----KAGELQCWDPQTGK  183 (473)
Q Consensus       113 ~~~~sp-~~~~lat~s~d~-~i~iwd~~~~~~~~~~~~~~~~v--~~l~~s~dg~~l~s~~-----~dg~i~iwd~~~~~  183 (473)
                      .++.+| .+..++.+-.-| ...+||..+++....+....+.-  =.-.||+||++|++.=     ..|.|-+||...+-
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            467788 455567776665 46899999888766554333221  1357999999999853     34789999998332


Q ss_pred             cccccCCCcCCcEEEEEeceeccCCCCceEEEe------------------eCCCcEEEEECCCCeEEEE--e--cCccc
Q 011978          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA------------------SKDGDARIWDVSLRKCVIC--L--SGHTL  241 (473)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~------------------s~dg~i~iwd~~~~~~~~~--~--~~h~~  241 (473)
                      ...-.+..|.-.-..+.+.|     ++..++.+                  +.+-++...|..+++.+..  +  .-|..
T Consensus        89 ~ri~E~~s~GIGPHel~l~p-----DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMP-----DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             EEEeEecCCCcChhhEEEcC-----CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence            11112222222222233333     33333332                  2233344444445544433  2  12444


Q ss_pred             cEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978          242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (473)
Q Consensus       242 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
                      .|.-++++++|.++.|....      -...                                                  
T Consensus       164 SiRHLa~~~~G~V~~a~Q~q------g~~~--------------------------------------------------  187 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAFAMQYQ------GDPG--------------------------------------------------  187 (305)
T ss_pred             ceeeEEecCCCcEEEEEecC------CCCC--------------------------------------------------
Confidence            55555555555444333210      0000                                                  


Q ss_pred             hcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeC
Q 011978          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRG  400 (473)
Q Consensus       322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~  400 (473)
                           ..+-.++.-..+..+...+...     .....-...+-+|++++++.++++.+ .-+.+.+||..+++++....-
T Consensus       188 -----~~~PLva~~~~g~~~~~~~~p~-----~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l  257 (305)
T PF07433_consen  188 -----DAPPLVALHRRGGALRLLPAPE-----EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL  257 (305)
T ss_pred             -----ccCCeEEEEcCCCcceeccCCh-----HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence                 0011122222222222222110     11112235688999999998886655 567899999999998776543


Q ss_pred             CccCEEEEEEecCCCEEEEEeC
Q 011978          401 HVGPVYQISWSADSRLLLSGSK  422 (473)
Q Consensus       401 h~~~v~~v~~sp~g~~l~s~s~  422 (473)
                        .-+..|+-.+++ ++++.+.
T Consensus       258 --~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  258 --PDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             --CceeeeeecCCc-eEEeCCC
Confidence              346677777666 6665543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.66  E-value=2.5e-05  Score=68.93  Aligned_cols=212  Identities=15%  Similarity=0.121  Sum_probs=129.2

Q ss_pred             CCcEEEEECCCCeEEEEecCc--cccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceee
Q 011978          219 DGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (473)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  296 (473)
                      +|+|..||..+++.+....-.  .....+.....++.+++++.++.+..||..+|+.+.+...........         
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~---------   72 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP---------   72 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE---------
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee---------
Confidence            678899999999888766421  122222233356788888999999999999999877654321100000         


Q ss_pred             eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee-ecCc--ccceeEEEECCCCc
Q 011978          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-MTGH--QQLVNHVYFSPDGQ  373 (473)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~--~~~v~~v~~sp~g~  373 (473)
                                                   ......++.++.++.++.+|...++..... ....  ...........++.
T Consensus        73 -----------------------------~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~  123 (238)
T PF13360_consen   73 -----------------------------VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD  123 (238)
T ss_dssp             -----------------------------EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT
T ss_pred             -----------------------------eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC
Confidence                                         011234666667778888886665543331 1110  01112222333478


Q ss_pred             EEEEEECCCcEEEEeCCCCceEEEeeCCccC----------EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc
Q 011978          374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGP----------VYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH  443 (473)
Q Consensus       374 ~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~----------v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h  443 (473)
                      .++.+..++.|..+|.++|+.+..+......          +..-....++ .+..++.++.+.-+|+.+++.+-...  
T Consensus       124 ~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--  200 (238)
T PF13360_consen  124 RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--  200 (238)
T ss_dssp             EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--
T ss_pred             EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--
Confidence            8888888999999999999998777654322          1222222344 67777777864444999988553222  


Q ss_pred             CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          444 ADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       444 ~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ...+..+ ...++..|+.++.|+.+..|+
T Consensus       201 ~~~~~~~-~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  201 ISGIYSL-PSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred             CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence            1223331 356778888888899998875

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.65  E-value=1.2e-06  Score=73.23  Aligned_cols=146  Identities=15%  Similarity=0.172  Sum_probs=86.3

Q ss_pred             CCCCeEEEEecCCeEEEeeCCCCccccc-cCCCcCCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeE
Q 011978          160 ADGKHLVSGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKC  232 (473)
Q Consensus       160 ~dg~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~  232 (473)
                      -.+..++++..||.+.+.+.+.-..... ....|.+.......+.       ..++..+.      -+..+.|+++-.+.
T Consensus        99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~-------~~~i~s~~~g~~n~~d~~~a~~~~p~~t  171 (319)
T KOG4714|consen   99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRH-------GNSILSGGCGNWNAQDNFYANTLDPIKT  171 (319)
T ss_pred             ccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeec-------ccEEecCCcceEeeccceeeeccccccc
Confidence            3467899999999999998764211111 1111111100000000       12333222      34456666654333


Q ss_pred             EEEecCccccEEEEEecCC--CeEEEeecCCeEEEEECCCCcee-eeeeccCceEEEEEecccceeeeccccCCCcccCC
Q 011978          233 VICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLI-RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (473)
Q Consensus       233 ~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  309 (473)
                      +..-..-...|++++-+|.  .++++|+.||.+-+||.++.... ..++.|+..++.+.|+|.                 
T Consensus       172 ~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk-----------------  234 (319)
T KOG4714|consen  172 LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK-----------------  234 (319)
T ss_pred             ccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC-----------------
Confidence            2221122234777777664  36889999999999999876433 345677777777777764                 


Q ss_pred             HHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (473)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  347 (473)
                                        .++.|++++.||.+..||..
T Consensus       235 ------------------~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  235 ------------------NPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             ------------------CchheeEecCCCcEEEEcCC
Confidence                              36789999999999999853

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.57  E-value=3.7e-07  Score=76.28  Aligned_cols=145  Identities=16%  Similarity=0.224  Sum_probs=92.4

Q ss_pred             CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-----CCcEEEEeCCCCceEEEeeCCcc
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-----DKSIKLWNGTTGKFVAVFRGHVG  403 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-----d~~v~lwd~~~~~~~~~~~~h~~  403 (473)
                      ...++++..|+.+.+.+...-.....+.......--+.++...++.+.++..     -+..+.|+++..+.+..-.....
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~  180 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD  180 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence            3468899999999998865422221111111111112233345555555432     12455666553332211111223


Q ss_pred             CEEEEEEecCCC-EEEEEeCCCcEEEEECCCCce-eecccccCCCEEEEEEeeC-CCEEEEEeCCCcEEeccC
Q 011978          404 PVYQISWSADSR-LLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDWSPD-GEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       404 ~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~~w~~  473 (473)
                      .|.+++-+|..+ .+++|+.||.+-+||++.... ...+..|..+|+.+.|+|. +..|.+++.||.+.-|.+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence            489999999654 667788999999999987644 3456789999999999985 568999999999999874

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.56  E-value=1.7e-07  Score=81.39  Aligned_cols=150  Identities=17%  Similarity=0.291  Sum_probs=107.8

Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc---ccccCCCcCCcEEEEE
Q 011978          124 ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGIS  200 (473)
Q Consensus       124 at~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~i~  200 (473)
                      ++.+.+..|-+-|++++.... +. ....|.++.|...+..+..|..+|.|...|++.+..   .....--|...|+++.
T Consensus       228 fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence            556677788888888764321 22 455688899998889999999999999999976421   1111223555555543


Q ss_pred             eceeccCCCCceEEEeeCCCcEEEEECCCCeE---EEEecCccccEEEEEec---CCCeEEEeecCCeEEEEECCCCcee
Q 011978          201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWG---GDGVIYTGSQDCTIKVWETTQGKLI  274 (473)
Q Consensus       201 ~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~---~~~~l~s~~~d~~i~~wd~~~~~~~  274 (473)
                      ...    .+...+++.+.+|+|++||.+.-++   +.+..||...-.-+.+.   .+|.+++++.|...|+|.+..|+++
T Consensus       306 ~Lq----~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  306 ILQ----FSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhc----cccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence            211    1345788889999999999987777   88899997654444432   3568999999999999999999988


Q ss_pred             eeeec
Q 011978          275 RELKG  279 (473)
Q Consensus       275 ~~~~~  279 (473)
                      .++..
T Consensus       382 ~tipf  386 (425)
T KOG2695|consen  382 CTIPF  386 (425)
T ss_pred             eccCC
Confidence            77643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.7e-06  Score=77.94  Aligned_cols=260  Identities=18%  Similarity=0.207  Sum_probs=161.4

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC--Cce-eEEEcCCCCCEEEEEECCCCCeEEEEec-CCeEEEeeCCCC
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--QTP-MFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTG  182 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~--~~~-~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~iwd~~~~  182 (473)
                      |.+.|+.+.- .-.+++.+++.||.++.|--..  +.. +..+..|-..|.+++.+.+|..+.|++. |..++++|+++-
T Consensus         8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            6666666543 3457889999999999996432  211 2234578888999999999999999777 999999998764


Q ss_pred             ccccc----cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE--EEecCccccEEEEEecCCC-eEE
Q 011978          183 KPSGN----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDG-VIY  255 (473)
Q Consensus       183 ~~~~~----~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~-~l~  255 (473)
                      .....    .+.+.-.+++    .+..  .....-++.-.++.+.++|-....|.  ..-.-|..+|.++.+++-+ ..+
T Consensus        87 DminmiKL~~lPg~a~wv~----skGd--~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v  160 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVT----SKGD--KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV  160 (558)
T ss_pred             chhhhcccccCCCceEEec----CCCC--eeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence            43211    1111111111    1100  00112234456789999997655432  2334588999999998766 467


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +....|.|.-|....  ..+..+.      .+.+...                                           
T Consensus       161 SiD~~gmVEyWs~e~--~~qfPr~------~l~~~~K-------------------------------------------  189 (558)
T KOG0882|consen  161 SIDISGMVEYWSAEG--PFQFPRT------NLNFELK-------------------------------------------  189 (558)
T ss_pred             eccccceeEeecCCC--cccCccc------ccccccc-------------------------------------------
Confidence            777889999997652  0000000      0000000                                           


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee----------------
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR----------------  399 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~----------------  399 (473)
                         ..-.+++          +........++.|+|+|..+++-+.|..|++++..+|++++.+.                
T Consensus       190 ---~eTdLy~----------f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l  256 (558)
T KOG0882|consen  190 ---HETDLYG----------FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL  256 (558)
T ss_pred             ---ccchhhc----------ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence               0000011          01112346789999999999999999999999999887654332                


Q ss_pred             ----------------CCc-cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978          400 ----------------GHV-GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ  438 (473)
Q Consensus       400 ----------------~h~-~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~  438 (473)
                                      .|. -.-+...|...|++|+-++.=| |++.++.++....
T Consensus       257 ~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r  311 (558)
T KOG0882|consen  257 MHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR  311 (558)
T ss_pred             ceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence                            111 1234567888899999887766 8888888765543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.53  E-value=2.4e-05  Score=75.57  Aligned_cols=242  Identities=15%  Similarity=0.179  Sum_probs=158.5

Q ss_pred             EEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceecc-----C--CCCceEEEeeCCCcEEEE
Q 011978          153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL-----N--APCRRFVSASKDGDARIW  225 (473)
Q Consensus       153 v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-----~--~~~~~~~s~s~dg~i~iw  225 (473)
                      -.++.|+|.| .|+.|+- ..|.+-|..+-+.+ +.+.-|...|+.+.|.|...     +  ..+-.++++...|.|.+|
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~i-qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLI-QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhh-hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            4577899876 5666654 46777787665433 45677889999999988532     1  134467778888999999


Q ss_pred             ECCCCeEEEEecCccccEEEEEecC---CC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978          226 DVSLRKCVICLSGHTLAVTCVKWGG---DG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (473)
Q Consensus       226 d~~~~~~~~~~~~h~~~v~~~~~~~---~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (473)
                      |...+..+..+..|...+..++|-+   +.  .|++-..-.++.+|+..+|+.............++.+.|-..      
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~------  168 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS------  168 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc------
Confidence            9999888888888999998888843   22  466667778999999999988876655555555555544210      


Q ss_pred             cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCC------CCeeeecCcc--------------
Q 011978          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK------QPKTRMTGHQ--------------  360 (473)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~--------------  360 (473)
                                                   ..+..-+..|.+.+-+.....      +.......|.              
T Consensus       169 -----------------------------rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns  219 (1062)
T KOG1912|consen  169 -----------------------------RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNS  219 (1062)
T ss_pred             -----------------------------ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccc
Confidence                                         011111111111111110000      0000000000              


Q ss_pred             -----------cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC--EEEEEeCCCcEE
Q 011978          361 -----------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR--LLLSGSKDSTLK  427 (473)
Q Consensus       361 -----------~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~--~l~s~s~Dg~i~  427 (473)
                                 -..-.++|+|.-+-++-...-+.+.++|++-..++....-..+.+.-+.|-|+++  .|.+.-.||.+.
T Consensus       220 ~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~lt  299 (1062)
T KOG1912|consen  220 TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLT  299 (1062)
T ss_pred             ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEE
Confidence                       0122367899776666666778899999998888888776677777788888775  688899999999


Q ss_pred             EEECC
Q 011978          428 VWDIR  432 (473)
Q Consensus       428 iwd~~  432 (473)
                      +|-.+
T Consensus       300 irvrk  304 (1062)
T KOG1912|consen  300 IRVRK  304 (1062)
T ss_pred             EEEee
Confidence            99544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.52  E-value=1.9e-06  Score=73.91  Aligned_cols=114  Identities=19%  Similarity=0.317  Sum_probs=80.6

Q ss_pred             cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc---eEEEeeCCc-----cCEEEEEEecCC-CEEEEEeCCCcEE
Q 011978          357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK---FVAVFRGHV-----GPVYQISWSADS-RLLLSGSKDSTLK  427 (473)
Q Consensus       357 ~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~---~~~~~~~h~-----~~v~~v~~sp~g-~~l~s~s~Dg~i~  427 (473)
                      ..|...++++.|..|.+.++++. |=.|.+|++.-..   .+.-++.|.     ..|++..|+|.. +.+.-.+..|.|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            56888899999999999888864 5679999876432   122334443     468899999964 4455566789999


Q ss_pred             EEECCCCce------ee--ccc--------ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          428 VWDIRTQKL------KQ--DLP--------GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       428 iwd~~~~~~------~~--~~~--------~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +-|++...+      +.  .+.        +-.+.|..+.|++.|+++++-+. -+++||+
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD  307 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD  307 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence            999983211      11  111        12246888999999999988766 5789996

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=2e-07  Score=80.94  Aligned_cols=128  Identities=16%  Similarity=0.236  Sum_probs=100.7

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC-----ceeEEEcCCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCC
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~  180 (473)
                      .++.|.++.|...+..++.|+..|.|..+|+..+     .+.. .-.|...|+||..-. ++++|++.+.+|+|++||.+
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~-rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ-RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE-EEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            5567999999999999999999999999999754     2222 335888899988766 78899999999999999987


Q ss_pred             CCcc--ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC
Q 011978          181 TGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (473)
Q Consensus       181 ~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~  238 (473)
                      --+.  ......||   |+..+..|.+..+....+++++.|...|||.+..+..+.+++-
T Consensus       330 ~~K~~~~V~qYeGH---vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  330 ATKCKKSVMQYEGH---VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             hhhcccceeeeecc---cccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            4332  12234455   5566667777777778889999999999999999888776653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.51  E-value=9.2e-05  Score=75.30  Aligned_cols=68  Identities=19%  Similarity=0.163  Sum_probs=55.1

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw  177 (473)
                      +.|.++.|.-++..++.+..+|.|.+-|.++..-. ....-.++|.+++||||++.++..+..+++.+-
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~m  136 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFM  136 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence            68999999999999999999999999888765422 122235789999999999999988888887664

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.44  E-value=0.0008  Score=57.90  Aligned_cols=41  Identities=22%  Similarity=0.444  Sum_probs=35.4

Q ss_pred             CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc
Q 011978          401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP  441 (473)
Q Consensus       401 h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~  441 (473)
                      ....|..+..||||+.||+...+|.|.+|++.+.+.+..+.
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            45689999999999999999999999999998876655544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1.7e-06  Score=77.90  Aligned_cols=209  Identities=18%  Similarity=0.186  Sum_probs=137.5

Q ss_pred             cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC---CeEEEEecCccccEEEEEecCCCeE-EEeec-CCeEEEE
Q 011978          192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVICLSGHTLAVTCVKWGGDGVI-YTGSQ-DCTIKVW  266 (473)
Q Consensus       192 ~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~l-~s~~~-d~~i~~w  266 (473)
                      |.+.|+.+...      ....+++++.||.++.|--..   -+.+..+..|...|.+++.+-++.+ .+.+. |..++++
T Consensus         8 hrd~i~hv~~t------ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    8 HRDVITHVFPT------KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             ccceeeeEeee------hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence            55556554321      235788999999999997543   2344556678888888888888864 46566 9999999


Q ss_pred             ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC-CceEEEecCCceEEEEe
Q 011978          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA-PERLVSGSDDFTMFLWE  345 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd  345 (473)
                      |+++-..+.-++..        .-|...   .....                      .+.. ....++.-+++.+.++|
T Consensus        82 DvEn~DminmiKL~--------~lPg~a---~wv~s----------------------kGd~~s~IAVs~~~sg~i~VvD  128 (558)
T KOG0882|consen   82 DVENFDMINMIKLV--------DLPGFA---EWVTS----------------------KGDKISLIAVSLFKSGKIFVVD  128 (558)
T ss_pred             Eeeccchhhhcccc--------cCCCce---EEecC----------------------CCCeeeeEEeecccCCCcEEEC
Confidence            98764433211110        000000   00000                      0000 01233445678889998


Q ss_pred             CCCCCC-CeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC------Cce---------EEEeeCCccCEEEEE
Q 011978          346 PAVSKQ-PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT------GKF---------VAVFRGHVGPVYQIS  409 (473)
Q Consensus       346 ~~~~~~-~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~------~~~---------~~~~~~h~~~v~~v~  409 (473)
                      ...... ......-|...|.++.+.|-+..+.+....|.|.-|....      .+.         +..+........++.
T Consensus       129 ~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~E  208 (558)
T KOG0882|consen  129 GFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFE  208 (558)
T ss_pred             CcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceE
Confidence            765543 3334455888999999999999999998899999998762      111         111222345678999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCceeec
Q 011978          410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQD  439 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~  439 (473)
                      |+|+|..+.+-+.|..|++++..+++..+.
T Consensus       209 fsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             EccccCcccccCcccEEEEEEeccchhhhh
Confidence            999999999999999999999998876544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2.4e-05  Score=69.80  Aligned_cols=81  Identities=20%  Similarity=0.323  Sum_probs=68.8

Q ss_pred             ccccCCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCC-CeEEEEecCCeEEEeeC
Q 011978          102 ATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDP  179 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~  179 (473)
                      ..+.+|...|..++|||..+ ++..++-++.|+|.|+++......+..| ..+++++|.-|. .+|+.|..+|.|.+||+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            35678999999999999988 6778899999999999998877777777 789999998765 46777888999999999


Q ss_pred             CCCc
Q 011978          180 QTGK  183 (473)
Q Consensus       180 ~~~~  183 (473)
                      +..+
T Consensus       266 R~~~  269 (463)
T KOG1645|consen  266 RQPE  269 (463)
T ss_pred             cCCC
Confidence            7654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.40  E-value=0.00093  Score=65.54  Aligned_cols=289  Identities=16%  Similarity=0.149  Sum_probs=153.5

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC------CEE--EEEECCCCCeEEEEecCCeEEEeeCCCCccccccCC-
Q 011978          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN------WVL--CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS-  190 (473)
Q Consensus       120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~------~v~--~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~-  190 (473)
                      +..++.++.++.+.-.|..+++.+........      .+.  .+... ++..++.++.++.|+-+|.++|+..-.... 
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            44566777889999999999887766542221      010  01111 226788888999999999999986543211 


Q ss_pred             CcCCcEEEEEeceeccCCCCceEEEee---------CCCcEEEEECCCCeEEEEecCccc--------------------
Q 011978          191 GHKKWITGISWEPVHLNAPCRRFVSAS---------KDGDARIWDVSLRKCVICLSGHTL--------------------  241 (473)
Q Consensus       191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s---------~dg~i~iwd~~~~~~~~~~~~h~~--------------------  241 (473)
                      .+...-..+.-.|...   ...++.++         .++.+.-.|..+++.+........                    
T Consensus       140 ~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         140 DQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             CCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            1100001111122111   13344443         367888889999988766532110                    


Q ss_pred             cEE-EEEecC-CCeEEEeecCC------------------eEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978          242 AVT-CVKWGG-DGVIYTGSQDC------------------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (473)
Q Consensus       242 ~v~-~~~~~~-~~~l~s~~~d~------------------~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (473)
                      .+. ...++. .+.++.++.++                  .+.-.|..+|+.....+........+.....-.+...   
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~---  293 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI---  293 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec---
Confidence            011 123332 45677776554                  6888888888887765421111100000000000000   


Q ss_pred             CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE---
Q 011978          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA---  378 (473)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg---  378 (473)
                                          ..+.+.....++.++.++.+...|...++........    ...++.+|  ..+..+   
T Consensus       294 --------------------~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~  347 (488)
T cd00216         294 --------------------KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFH  347 (488)
T ss_pred             --------------------cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEcccc
Confidence                                0001111124677888899988887766543322111    11233444  222222   


Q ss_pred             ---------------ECCCcEEEEeCCCCceEEEeeCCc--------cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011978          379 ---------------SFDKSIKLWNGTTGKFVAVFRGHV--------GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK  435 (473)
Q Consensus       379 ---------------s~d~~v~lwd~~~~~~~~~~~~h~--------~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~  435 (473)
                                     ..+|.+.-.|..+|+.+-......        .+...-.....+..|+.++.||.++.+|..+++
T Consensus       348 ~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         348 IPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGK  427 (488)
T ss_pred             ccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCc
Confidence                           235678888888888765544220        111110111256788888999999999999998


Q ss_pred             eeeccc
Q 011978          436 LKQDLP  441 (473)
Q Consensus       436 ~~~~~~  441 (473)
                      .+-+.+
T Consensus       428 ~lW~~~  433 (488)
T cd00216         428 ELWKFR  433 (488)
T ss_pred             eeeEEE
Confidence            865543

The alignment model contains an 8-bladed beta-propeller.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.37  E-value=4.3e-07  Score=88.35  Aligned_cols=161  Identities=14%  Similarity=0.204  Sum_probs=106.6

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC--eEEEe
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCW  177 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg--~i~iw  177 (473)
                      ....+..|+..-+|++|+-+.++|+.|+-.|.|++|++.+|.......+|..+|+-+.=+.||..+++.+...  -..+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            3456778999999999999999999999999999999999988888889999999999999998877665443  36889


Q ss_pred             eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecC---ccccEEEEEecCCCe
Q 011978          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSG---HTLAVTCVKWGGDGV  253 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~---h~~~v~~~~~~~~~~  253 (473)
                      +...--.....+.    .-.++.|+..     ...-+.|.......+||+.++..+.+ +.+   ....-.++.|+|...
T Consensus      1173 ~~~s~~~~~Hsf~----ed~~vkFsn~-----~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD----EDKAVKFSNS-----LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             ccccccCcccccc----ccceeehhhh-----HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence            8754211111111    1223444321     11112344446788999998765544 221   122235677887654


Q ss_pred             EEEeecCCeEEEEECCCCce
Q 011978          254 IYTGSQDCTIKVWETTQGKL  273 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~  273 (473)
                      |+-  +||  -+||++..+.
T Consensus      1244 LIl--ndG--vLWDvR~~~a 1259 (1516)
T KOG1832|consen 1244 LIL--NDG--VLWDVRIPEA 1259 (1516)
T ss_pred             eEe--eCc--eeeeeccHHH
Confidence            332  333  3587765433

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.31  E-value=0.00061  Score=60.42  Aligned_cols=209  Identities=14%  Similarity=0.239  Sum_probs=119.7

Q ss_pred             CCcEEEEECCCCeE---EEEecCccccEEEEEecCCC-eEEEeec---CCeEEEEECCC--Ccee--eeeeccCceEEEE
Q 011978          219 DGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGDG-VIYTGSQ---DCTIKVWETTQ--GKLI--RELKGHGHWVNSL  287 (473)
Q Consensus       219 dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~-~l~s~~~---d~~i~~wd~~~--~~~~--~~~~~~~~~v~~~  287 (473)
                      ..-|.+|++.+...   ...+..+....+-++|++++ .|+++-.   +|.|..|.+..  |++.  ......+.+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            45688888764321   12233456678889999988 5776643   46676665543  4432  1111122222334


Q ss_pred             EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec-CCceEEEEeCCCCCC--CeeeecCcccc--
Q 011978          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQ--PKTRMTGHQQL--  362 (473)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~--  362 (473)
                      +++++..                                    .++++. ..+.+.++.+.....  ....+..|...  
T Consensus        95 svd~~g~------------------------------------~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p  138 (346)
T COG2706          95 SVDEDGR------------------------------------FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP  138 (346)
T ss_pred             EECCCCC------------------------------------EEEEEEccCceEEEEEcccCCccccceeeeecCCCCC
Confidence            4443321                                    222222 234455554322111  11111122222  


Q ss_pred             --------eeEEEECCCCcEEEEEECC-CcEEEEeCCCCceEEE----eeCCccCEEEEEEecCCCEEEEEeC-CCcEEE
Q 011978          363 --------VNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAV----FRGHVGPVYQISWSADSRLLLSGSK-DSTLKV  428 (473)
Q Consensus       363 --------v~~v~~sp~g~~lasgs~d-~~v~lwd~~~~~~~~~----~~~h~~~v~~v~~sp~g~~l~s~s~-Dg~i~i  428 (473)
                              +....|.|++++|++.... -.|.+|++..|++...    ++ ....-.-+.|+|++++...... +++|.+
T Consensus       139 ~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v  217 (346)
T COG2706         139 HERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDV  217 (346)
T ss_pred             CccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence                    6678899999999988642 2699999998765322    22 2234577999999998877664 899999


Q ss_pred             EECCC--Cce--eecc---cc---cCCCEEEEEEeeCCCEEEEEeC
Q 011978          429 WDIRT--QKL--KQDL---PG---HADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       429 wd~~~--~~~--~~~~---~~---h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      |....  ++.  ++++   +.   ......++..++||++|..+..
T Consensus       218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence            99876  332  2222   11   1235668899999999976643

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.31  E-value=2e-05  Score=77.49  Aligned_cols=189  Identities=13%  Similarity=0.208  Sum_probs=120.7

Q ss_pred             CceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEe
Q 011978          210 CRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL  289 (473)
Q Consensus       210 ~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~  289 (473)
                      ...++.|+-...+..+|+++.+......-....|+-+..+ +..+++|...|+|.+-|..+-+.++++..|...|..+.+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv  225 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN-NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV  225 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec-CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence            3467777777777888888776555443222234444433 235778888888888888887777777766655544433


Q ss_pred             cccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEEC
Q 011978          290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS  369 (473)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s  369 (473)
                      ..                                      +.|++++......                           
T Consensus       226 ~G--------------------------------------NlLitCG~S~R~~---------------------------  240 (1118)
T KOG1275|consen  226 QG--------------------------------------NLLITCGYSMRRY---------------------------  240 (1118)
T ss_pred             cC--------------------------------------CeEEEeecccccc---------------------------
Confidence            21                                      1233333221100                           


Q ss_pred             CCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecC-CCEEEEEeCCCcEEEEECCC---Cce-eecccccC
Q 011978          370 PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD-SRLLLSGSKDSTLKVWDIRT---QKL-KQDLPGHA  444 (473)
Q Consensus       370 p~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~Dg~i~iwd~~~---~~~-~~~~~~h~  444 (473)
                          .+   -.|.-|+|||++..+.+.-+.-+.++ .=+.|.|. ...++++|..|...+-|..+   ... ..-+....
T Consensus       241 ----~l---~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~  312 (1118)
T KOG1275|consen  241 ----NL---AMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG  312 (1118)
T ss_pred             ----cc---cccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC
Confidence                00   13677999999988766655555554 34677774 35788888899999988432   111 11122223


Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          445 DEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       445 ~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ..+.++++|+.|+.||.|..+|.|.+|.
T Consensus       313 s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  313 SGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CcceeEEecCCCceEEEecccCcEeeec
Confidence            4589999999999999999999999995

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.28  E-value=0.00028  Score=71.99  Aligned_cols=108  Identities=17%  Similarity=0.366  Sum_probs=75.7

Q ss_pred             eEEEECCCCcEEEEEE-----CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe---CCCcEEEEECCC--
Q 011978          364 NHVYFSPDGQWVASAS-----FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS---KDSTLKVWDIRT--  433 (473)
Q Consensus       364 ~~v~~sp~g~~lasgs-----~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s---~Dg~i~iwd~~~--  433 (473)
                      .+|.|--||+++|+..     ..+.|++||.+ |.+-.+-+...+-=.+++|-|.|..+|+-.   .|+.|.+|.-+.  
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence            4688999999999843     33789999977 543222222333446799999999998753   466799997654  


Q ss_pred             -CceeecccccCCCEEEEEEeeCCCEEEE---EeCCCcEEecc
Q 011978          434 -QKLKQDLPGHADEVFAVDWSPDGEKVAS---GGKDRVLKLWM  472 (473)
Q Consensus       434 -~~~~~~~~~h~~~i~~l~~s~d~~~l~s---~~~D~~i~~w~  472 (473)
                       +...-.++....++..++|+.++..||.   ......|++|.
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence             2222233333445899999999999988   55566799995

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=4.3e-05  Score=72.05  Aligned_cols=75  Identities=31%  Similarity=0.472  Sum_probs=63.3

Q ss_pred             CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~  182 (473)
                      .....|.|++++|+.+.|+.|+.||+|.+||...+...  .....-....++|+|+|..+++|+..|.+.+||..-+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            46778999999999999999999999999998766432  2233455788999999999999999999999997543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.20  E-value=4.2e-05  Score=75.28  Aligned_cols=182  Identities=14%  Similarity=0.180  Sum_probs=119.6

Q ss_pred             CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc
Q 011978          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL  241 (473)
Q Consensus       162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~  241 (473)
                      +..++-|+....+..+|+++.+..... .-....+.=+..       .++.+.+|...|+|.+-|..+.+.+.++..|++
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~-------Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRY-------NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeee-eccCCceEEEEe-------cCcEEEeecccceEEeecCCcCceeeeeecccc
Confidence            456777777778888888876543221 111112333332       235677888899999999999999999999999


Q ss_pred             cEEEEEecCCCeEEEee---------cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978          242 AVTCVKWGGDGVIYTGS---------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (473)
Q Consensus       242 ~v~~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (473)
                      .|......++ .|++++         .|.-|+|||++.-+.+.-+.-+-.+        .                    
T Consensus       219 siSDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--------~--------------------  269 (1118)
T KOG1275|consen  219 SISDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--------Q--------------------  269 (1118)
T ss_pred             ceeeeeccCC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--------h--------------------
Confidence            9988776644 666665         3667899999875544322111100        0                    


Q ss_pred             HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe---eeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK---TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (473)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd  388 (473)
                              +-..-..-+.+++.++..|...+-|......+.   .-.......+..+++|++|+.+|.|..+|.|.+|.
T Consensus       270 --------flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  270 --------FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             --------hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence                    000001124568888888888888854433331   11122234589999999999999999999999996

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.17  E-value=0.0043  Score=55.09  Aligned_cols=246  Identities=16%  Similarity=0.173  Sum_probs=134.4

Q ss_pred             EEEEEECC-CCCeEEEEecCCe-EEEeeCCCCccccccCCCcCCc-EEEEEeceeccCCCCceEEEe-----eCCCcEEE
Q 011978          153 VLCIAWSA-DGKHLVSGSKAGE-LQCWDPQTGKPSGNPLSGHKKW-ITGISWEPVHLNAPCRRFVSA-----SKDGDARI  224 (473)
Q Consensus       153 v~~l~~s~-dg~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~~~~~~s~-----s~dg~i~i  224 (473)
                      ...++.+| .+..++.+-.-|+ ..+||..+++....... ..+. .++-    ..|+.++.++.+.     +..|.|-|
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGH----g~fs~dG~~LytTEnd~~~g~G~IgV   81 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGH----GVFSPDGRLLYTTENDYETGRGVIGV   81 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecC----EEEcCCCCEEEEeccccCCCcEEEEE
Confidence            34567788 4455666777765 67899988875432211 1111 1110    1234466677664     34578999


Q ss_pred             EECC-CCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978          225 WDVS-LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       225 wd~~-~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                      ||.. .-+.+..+..|...-..+.+.+|+ .|+.+ +.| |.. +-.+|+....+.                        
T Consensus        82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA-NGG-I~T-hpd~GR~kLNl~------------------------  134 (305)
T PF07433_consen   82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA-NGG-IET-HPDSGRAKLNLD------------------------  134 (305)
T ss_pred             EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE-cCC-Ccc-CcccCceecChh------------------------
Confidence            9998 556677777777666677788888 44432 111 100 000111000000                        


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE-EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM-FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i-~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d  381 (473)
                                             ...+.....-..+|.+ --|.+.        ..-|...++-+++.++|..++..-..
T Consensus       135 -----------------------tM~psL~~ld~~sG~ll~q~~Lp--------~~~~~lSiRHLa~~~~G~V~~a~Q~q  183 (305)
T PF07433_consen  135 -----------------------TMQPSLVYLDARSGALLEQVELP--------PDLHQLSIRHLAVDGDGTVAFAMQYQ  183 (305)
T ss_pred             -----------------------hcCCceEEEecCCCceeeeeecC--------ccccccceeeEEecCCCcEEEEEecC
Confidence                                   0001111111122221 111110        02355678888888888766665443


Q ss_pred             C-------cEEEEeCCCCceEEEee-------CCccCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeecccccCCC
Q 011978          382 K-------SIKLWNGTTGKFVAVFR-------GHVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHADE  446 (473)
Q Consensus       382 ~-------~v~lwd~~~~~~~~~~~-------~h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~h~~~  446 (473)
                      |       .|-+++..  +.+..+.       .-.+.+-+|++++++.+++..|- -|.+.+||..+++.+....-  ..
T Consensus       184 g~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D  259 (305)
T PF07433_consen  184 GDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PD  259 (305)
T ss_pred             CCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--Cc
Confidence            3       13333322  2122221       22467899999999998877664 66899999999998766543  34


Q ss_pred             EEEEEEeeCCCEEEEEeCCC
Q 011978          447 VFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       447 i~~l~~s~d~~~l~s~~~D~  466 (473)
                      +..++-.+++ +++|.+...
T Consensus       260 ~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  260 ACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             eeeeeecCCc-eEEeCCCcc
Confidence            6777777666 666666544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=0.00028  Score=63.20  Aligned_cols=93  Identities=23%  Similarity=0.292  Sum_probs=73.0

Q ss_pred             EEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-
Q 011978          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-  252 (473)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-  252 (473)
                      +++.+..+-+.. ..+.+|...|.+++|+|...    ..+..++-+.+|+|.|+++..++..+..+ ..+++++|+-|. 
T Consensus       175 v~~l~~~~fkss-q~lp~~g~~IrdlafSp~~~----GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~  248 (463)
T KOG1645|consen  175 VQKLESHDFKSS-QILPGEGSFIRDLAFSPFNE----GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER  248 (463)
T ss_pred             eEEeccCCcchh-hcccccchhhhhhccCcccc----ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc
Confidence            455554444433 25777888899999888532    36788999999999999999988888777 789999998654 


Q ss_pred             -eEEEeecCCeEEEEECCCCc
Q 011978          253 -VIYTGSQDCTIKVWETTQGK  272 (473)
Q Consensus       253 -~l~s~~~d~~i~~wd~~~~~  272 (473)
                       .|++|...|.|.+||++..+
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ceeEEeccCceEEEEEccCCC
Confidence             69999999999999998643

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.00014  Score=70.71  Aligned_cols=142  Identities=23%  Similarity=0.307  Sum_probs=97.9

Q ss_pred             CCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCC-----CCeEEEEecCCeEEEeeCCC-CccccccCC
Q 011978          117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-----GKHLVSGSKAGELQCWDPQT-GKPSGNPLS  190 (473)
Q Consensus       117 sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~d-----g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~  190 (473)
                      ..+|.++++||.||+|.|-.+-+.+...... ...++.+++++||     .+++++|+..| +.++.-.= |......+.
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~  157 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS  157 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence            3469999999999999999887776554432 4567999999998     67899999999 76664211 111112355


Q ss_pred             CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE------EEEEecCCCeEEEeecCCeEE
Q 011978          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV------TCVKWGGDGVIYTGSQDCTIK  264 (473)
Q Consensus       191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v------~~~~~~~~~~l~s~~~d~~i~  264 (473)
                      .-.++|.++.|..       +.++-+ .|--|++||..+++.+..+......+      ..+.|.++..|+-|- ..+|+
T Consensus       158 ~~eG~I~~i~W~g-------~lIAWa-nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW-~d~v~  228 (846)
T KOG2066|consen  158 EGEGPIHSIKWRG-------NLIAWA-NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW-GDSVK  228 (846)
T ss_pred             cCccceEEEEecC-------cEEEEe-cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEec-CCeEE
Confidence            6678999999975       344444 45558999999887776554322222      246788777666554 45788


Q ss_pred             EEECC
Q 011978          265 VWETT  269 (473)
Q Consensus       265 ~wd~~  269 (473)
                      +..++
T Consensus       229 i~~I~  233 (846)
T KOG2066|consen  229 ICSIK  233 (846)
T ss_pred             EEEEe
Confidence            88776

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.00031  Score=68.54  Aligned_cols=156  Identities=20%  Similarity=0.225  Sum_probs=107.4

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      +.+.|++++  ++.+|-|.-+|.|++++.....  .....|...      ..+|.++++|+.||+|.|-.+-+.+...  
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~--  107 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT--  107 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce--
Confidence            455666664  5789999999999999876543  222234332      4579999999999999998877665322  


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC--CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEE
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW  266 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w  266 (473)
                      ......++.+++++|.-....+++|++||..| +.++.-+  ..+....+..-.++|.++.|.++ +++.+. |-.|++|
T Consensus       108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-lIAWan-d~Gv~vy  184 (846)
T KOG2066|consen  108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-LIAWAN-DDGVKVY  184 (846)
T ss_pred             eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-EEEEec-CCCcEEE
Confidence            12345678899999874455678999999998 7776421  11111234455678999999854 555555 4458999


Q ss_pred             ECCCCceeeeeec
Q 011978          267 ETTQGKLIRELKG  279 (473)
Q Consensus       267 d~~~~~~~~~~~~  279 (473)
                      |..+++.+..+..
T Consensus       185 d~~~~~~l~~i~~  197 (846)
T KOG2066|consen  185 DTPTRQRLTNIPP  197 (846)
T ss_pred             eccccceeeccCC
Confidence            9998877766544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.05  E-value=0.011  Score=55.42  Aligned_cols=67  Identities=25%  Similarity=0.257  Sum_probs=46.6

Q ss_pred             CCCCCeEEEE---------eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978          117 SPDGRQLASG---------SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (473)
Q Consensus       117 sp~~~~lat~---------s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  185 (473)
                      |||+++++..         +..+.+.|||+++++... +......+....|||+|+.++... ++.|.+++..++...
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence            5788877653         234678999999875332 222245688899999999998875 579999998776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.03  E-value=4.6e-05  Score=71.84  Aligned_cols=73  Identities=22%  Similarity=0.262  Sum_probs=61.5

Q ss_pred             cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       359 ~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      ....+.+.+++|+...++.|..||+|.+||...+...  +....-..+.++|+|+|.++++|+..|.+.+||+.-
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            4557899999999999999999999999998766432  222344578899999999999999999999999864

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.00  E-value=0.021  Score=56.45  Aligned_cols=112  Identities=19%  Similarity=0.180  Sum_probs=65.7

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC-CCEE---E-------EEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVL---C-------IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~-~~v~---~-------l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      +..|+.++.++.|.-.|..+++.+....... ..+.   +       +++  .+..++.++.|+.+.-.|.++|+..-..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4567777778888888999988776653211 1111   1       122  2356788889999999999999865432


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEee------CCCcEEEEECCCCeEEEEe
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICL  236 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s------~dg~i~iwd~~~~~~~~~~  236 (473)
                      .......-..+.-.|.-.   ..+++.+.      .+|.|.-+|.++++.+..+
T Consensus       147 ~~~~~~~~~~~tssP~v~---~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVV---KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             ccccccccccccCCcEEE---CCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            211110000111122211   12444443      2688999999999877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.0015  Score=64.52  Aligned_cols=200  Identities=13%  Similarity=0.156  Sum_probs=118.8

Q ss_pred             CCceEEEeeCCCcEEEEECCCCeEEEEecCcccc-EEEEEecCC-CeEEEeecCC-----eEEEEECCCCc------eee
Q 011978          209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA-VTCVKWGGD-GVIYTGSQDC-----TIKVWETTQGK------LIR  275 (473)
Q Consensus       209 ~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~-~~l~s~~~d~-----~i~~wd~~~~~------~~~  275 (473)
                      ....++.|+.+|.|.+.+-. .+.+..+..+... |..+....+ ..|++-+.|+     .+++|+++.-+      ++.
T Consensus        34 ~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~  112 (933)
T KOG2114|consen   34 STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY  112 (933)
T ss_pred             CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence            34568889999988887632 2333445444444 333333222 3677766554     58999986431      121


Q ss_pred             --eeec-----cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCC
Q 011978          276 --ELKG-----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (473)
Q Consensus       276 --~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  348 (473)
                        .+..     ...++..++++.+                                    -..+++|-.+|.|..+....
T Consensus       113 ~~ri~~~~np~~~~p~s~l~Vs~~------------------------------------l~~Iv~Gf~nG~V~~~~GDi  156 (933)
T KOG2114|consen  113 EHRIFTIKNPTNPSPASSLAVSED------------------------------------LKTIVCGFTNGLVICYKGDI  156 (933)
T ss_pred             eeeeeccCCCCCCCcceEEEEEcc------------------------------------ccEEEEEecCcEEEEEcCcc
Confidence              1111     1222333333322                                    23578888899988886433


Q ss_pred             CCCCe---eeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce-EEEeeCCccCEEEEEEecCCCEEEEEeCCC
Q 011978          349 SKQPK---TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF-VAVFRGHVGPVYQISWSADSRLLLSGSKDS  424 (473)
Q Consensus       349 ~~~~~---~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg  424 (473)
                      .+...   ........+|+.+++..+++.++-......|.+|.+....+ ...+..|...++|..|++....+++++. .
T Consensus       157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e  235 (933)
T KOG2114|consen  157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-E  235 (933)
T ss_pred             hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-c
Confidence            22111   11122346799999999888744444455799999874332 4557778889999999986664555543 4


Q ss_pred             cEEEEECCCCceeeccc-ccCCC
Q 011978          425 TLKVWDIRTQKLKQDLP-GHADE  446 (473)
Q Consensus       425 ~i~iwd~~~~~~~~~~~-~h~~~  446 (473)
                      .+.+||....+....+. ||...
T Consensus       236 ~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  236 FLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             eEEEEcCCCcceeeeecCCCeEE
Confidence            69999998766655665 66543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.97  E-value=0.0025  Score=59.98  Aligned_cols=270  Identities=15%  Similarity=0.140  Sum_probs=130.5

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC--
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL--  229 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~--  229 (473)
                      .|..+.|+++...|+.|...|.|.+|.+...+....   .-...-....+.+...+.           +.-.+-|+..  
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~---~~~~~~~~~~~~~~~~~~-----------~~~~l~di~~r~   68 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN---REQPPDLDYNFRRFSLNN-----------SPGKLTDISDRA   68 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--GGG-----------SS-SEEE-GGG-
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc---cCCCcccCcccccccccC-----------CCcceEEehhhC
Confidence            478899999989999999999999997754322110   000000111111111111           1112223322  


Q ss_pred             ------C-eEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeec--------cCceEEEEEecccce
Q 011978          230 ------R-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG--------HGHWVNSLALSTEYA  294 (473)
Q Consensus       230 ------~-~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~  294 (473)
                            + .....+....+.|++++.+.-|.++.|..+|.+.|.|++....+..-..        ....+.++.|..-  
T Consensus        69 ~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm--  146 (395)
T PF08596_consen   69 PPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM--  146 (395)
T ss_dssp             -TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE--
T ss_pred             CcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE--
Confidence                  1 1223334457899999998889999999999999999987776654211        1223444433210  


Q ss_pred             eeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC-CC-Ce----eeecCcccceeEEE-
Q 011978          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-KQ-PK----TRMTGHQQLVNHVY-  367 (473)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~-~~----~~~~~~~~~v~~v~-  367 (473)
                        ....|.                        ...-.++.|...|.+.+|.+... .. ..    .....+...+..+. 
T Consensus       147 --~~~~D~------------------------ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~  200 (395)
T PF08596_consen  147 --TLGGDG------------------------YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIP  200 (395)
T ss_dssp             --E-TTSS------------------------SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEE
T ss_pred             --ecCCCc------------------------ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEE
Confidence              000000                        11225778888899888875321 11 10    01112334444333 


Q ss_pred             ECCC-C--------------------cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE-----ecCCCEEEEEe
Q 011978          368 FSPD-G--------------------QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW-----SADSRLLLSGS  421 (473)
Q Consensus       368 ~sp~-g--------------------~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~-----sp~g~~l~s~s  421 (473)
                      |+.+ |                    .+++.+ .+..+|++...+.+.........-....+.+     ...+..|++-.
T Consensus       201 i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~  279 (395)
T PF08596_consen  201 INADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF  279 (395)
T ss_dssp             EETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred             EECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE
Confidence            3221 1                    134443 3567999998888776554433223334445     23567888889


Q ss_pred             CCCcEEEEECCCCceeecccccC----CCEEEEEEeeCCCEEEEEeC
Q 011978          422 KDSTLKVWDIRTQKLKQDLPGHA----DEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       422 ~Dg~i~iwd~~~~~~~~~~~~h~----~~i~~l~~s~d~~~l~s~~~  464 (473)
                      .+|.|++|.+-..+.+..+.-..    ..+....++++|..++-.|.
T Consensus       280 ~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  280 NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred             CCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence            99999999998877665443211    12334566888887665544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.95  E-value=9.7e-06  Score=79.28  Aligned_cols=187  Identities=19%  Similarity=0.286  Sum_probs=118.7

Q ss_pred             EEEecCccccEEEEEecCC-CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978          233 VICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (473)
Q Consensus       233 ~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (473)
                      ...+..|....+|++|+.+ ..|+.|+..|.|+++++.+|........|+..|..+.-+.+...                
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~---------------- 1157 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGST---------------- 1157 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcce----------------
Confidence            3456678888999999865 47899999999999999999988888888887776644333211                


Q ss_pred             HHHHHHHhhhhcccCCCCceEEEecCCc-eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978          312 EMKKAALERYNKIKGNAPERLVSGSDDF-TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (473)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~  390 (473)
                                         .+.+++... -..+|+......++..+.    .-.++.|+..-+.-+.|..-....+||.+
T Consensus      1158 -------------------~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvq 1214 (1516)
T KOG1832|consen 1158 -------------------QLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQ 1214 (1516)
T ss_pred             -------------------eeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecc
Confidence                               122222222 334676544333333222    23467787765555555555568999999


Q ss_pred             CCceEEEe-eC---CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978          391 TGKFVAVF-RG---HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       391 ~~~~~~~~-~~---h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      ++..+.++ .+   .+..-+...|||+..++.   .||  .+||++..+.+..+..-...+ .=.|+|.|..++--+.
T Consensus      1215 T~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1215 TCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE 1286 (1516)
T ss_pred             cCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech
Confidence            98766552 21   122337788999888775   566  479988766555544332211 1247777777665543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.94  E-value=0.0094  Score=50.72  Aligned_cols=135  Identities=17%  Similarity=0.120  Sum_probs=78.2

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEE
Q 011978          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS  200 (473)
Q Consensus       121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~  200 (473)
                      .+++.||..+.+.--|..++....... -...+.+-+.- -|++++.|.+.|.+++.+.++|...........  |   .
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~--v---k   96 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET--V---K   96 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh--h---c
Confidence            456667777777777777665443211 11222222211 367899999999999999999865432211111  1   1


Q ss_pred             eceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeecCCeE
Q 011978          201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTI  263 (473)
Q Consensus       201 ~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d~~i  263 (473)
                      ..+. ...++..+..++.|++....|.++..+++..+-....-.+-..++ ++.|+.+...|.+
T Consensus        97 ~~a~-~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen   97 VRAQ-CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             cceE-EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence            1111 123456788899999999999999988876543222222222333 4556655555544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.93  E-value=0.0076  Score=59.19  Aligned_cols=116  Identities=16%  Similarity=0.088  Sum_probs=68.0

Q ss_pred             CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEE--EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc
Q 011978          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT--GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH  239 (473)
Q Consensus       162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h  239 (473)
                      +..++.++.++.++-.|..+|+..-...........  .+.-.+... .+..+++.++.++.|.-+|.++++.+......
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            456777888899999999988765432111110000  000001000 01157778888999999999999988765432


Q ss_pred             ccc-----EE-EEEecCCCeEEEee---------cCCeEEEEECCCCceeeeeec
Q 011978          240 TLA-----VT-CVKWGGDGVIYTGS---------QDCTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       240 ~~~-----v~-~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~~~  279 (473)
                      ...     +. +..+. ++.++.++         .++.+.-+|..+|+.+...+.
T Consensus       140 ~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         140 DQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             CCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            210     11 11122 35555554         367889999999998876644

The alignment model contains an 8-bladed beta-propeller.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.87  E-value=7.9e-05  Score=71.45  Aligned_cols=109  Identities=23%  Similarity=0.299  Sum_probs=83.0

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE-EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce----
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL----  436 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~----  436 (473)
                      .+.=-+++..+++++.|+.-|.+++|+-..++... ...+..+.+.....|++..++|.|+..|.|-++.+.....    
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            34444667789999999999999999977665432 2333455667778899999999999999999998765321    


Q ss_pred             -eecc-cccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          437 -KQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       437 -~~~~-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                       .... ..|...|++++|++|+..+.+|+.-|+|.+
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~  150 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL  150 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence             1111 236789999999999999999999998754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.00039  Score=68.20  Aligned_cols=70  Identities=21%  Similarity=0.310  Sum_probs=61.5

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      +.++.|+|..-.||.|-.-|.+.+|...+.+.-.....|..+|.-+.||++|..++++..-|.+.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            4568999999999999899999999987766555556899999999999999999999999999999865

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.84  E-value=0.00056  Score=68.87  Aligned_cols=143  Identities=19%  Similarity=0.281  Sum_probs=97.3

Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCce-EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      .......++-.|++.|+.+..++.+... |..++-...+                               ....++..+.
T Consensus       499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~-------------------------------aqlt~e~tfl  547 (794)
T PF08553_consen  499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKF-------------------------------AQLTNEQTFL  547 (794)
T ss_pred             cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccc-------------------------------cccCCCceEE
Confidence            3445678999999999999998876543 4444322110                               0112345677


Q ss_pred             ecCCceEEEEeCCCCCCCee----eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978          335 GSDDFTMFLWEPAVSKQPKT----RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW  410 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~----~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~  410 (473)
                      |-.++.++.||++.......    .........+|++-+.+| +||.|+.+|.||+||--..+....+.+-..+|..|..
T Consensus       548 Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDv  626 (794)
T PF08553_consen  548 GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDV  626 (794)
T ss_pred             EECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEe
Confidence            88899999999987542211    112234457888877766 5899999999999994332223345666789999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEEC
Q 011978          411 SADSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       411 sp~g~~l~s~s~Dg~i~iwd~  431 (473)
                      +.||++|+..+ +..+.+++.
T Consensus       627 t~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  627 TADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cCCCcEEEEee-cceEEEEEE
Confidence            99999877655 556777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.83  E-value=0.021  Score=53.90  Aligned_cols=98  Identities=11%  Similarity=0.120  Sum_probs=52.1

Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEE-----CCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc----
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF-----SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV----  402 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~-----sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~----  402 (473)
                      ++....+..++++.+...+...+.. ........+.+     ...+..|++-..+|.++++.+...+.+..++-..    
T Consensus       228 ~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~  306 (395)
T PF08596_consen  228 YVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS  306 (395)
T ss_dssp             EEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred             EEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence            4444457788888876655443333 22223333444     2356788888999999999999988877665422    


Q ss_pred             cCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978          403 GPVYQISWSADSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       403 ~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~  431 (473)
                      ..+....++++|..++-.+.. .+.++.+
T Consensus       307 ~~~~~ssis~~Gdi~~~~gps-E~~l~sv  334 (395)
T PF08596_consen  307 RRLSSSSISRNGDIFYWTGPS-EIQLFSV  334 (395)
T ss_dssp             HHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred             ccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence            234456778888877665543 3444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00320 WD40 WD40 repeats

Probab=97.82  E-value=6.2e-05  Score=44.23  Aligned_cols=39  Identities=41%  Similarity=0.897  Sum_probs=34.5

Q ss_pred             CceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978          392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD  430 (473)
Q Consensus       392 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd  430 (473)
                      +++...+..|...|.++.|++++.++++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00015  Score=68.82  Aligned_cols=94  Identities=19%  Similarity=0.274  Sum_probs=74.8

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE-EEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL-CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~-~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~  187 (473)
                      ..|.-+.|+|.-..+|++..+|.+.+.-++ .+.+..+.-|...+. +++|.|||+.|+.|-.||+|++.|.+++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            356778999999999999999999888877 555666665666666 999999999999999999999999998875544


Q ss_pred             cCCCcCCcEEEEEece
Q 011978          188 PLSGHKKWITGISWEP  203 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~  203 (473)
                      ........|..+.|.+
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            3344455677777753

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.78  E-value=0.026  Score=50.91  Aligned_cols=273  Identities=17%  Similarity=0.155  Sum_probs=134.5

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEeeCCCCcccccc-CCC-cCCcEE
Q 011978          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNP-LSG-HKKWIT  197 (473)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd~~~~~~~~~~-~~~-~~~~v~  197 (473)
                      +.+.|+|..+++.+-.+..  +-.-.+..+||++.++++.          ..-.|.+||.++-...... +.. |...  
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~--   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ--   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe--
Confidence            4788999888776555432  2233466899999988754          2346999999876432211 111 1110  


Q ss_pred             EEEece-eccCCCCceEEEe--eCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECC-CCce
Q 011978          198 GISWEP-VHLNAPCRRFVSA--SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKL  273 (473)
Q Consensus       198 ~i~~~~-~~~~~~~~~~~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~  273 (473)
                      .+.... ..++.++++++..  +-.-+|-+-|+..++.+..+.-.  .+..+--.++..+.+-+.||++....+. .|+.
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence            000000 0011112222111  11223444455555555443211  1111111233457788889988887776 4544


Q ss_pred             eeeeeccCceEEEEEecccc-eee-eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978          274 IRELKGHGHWVNSLALSTEY-ALR-TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ  351 (473)
Q Consensus       274 ~~~~~~~~~~v~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  351 (473)
                      ....       .. .+.++. .+. ...+.                         .....++--+..|.++--|+.....
T Consensus       171 ~~~~-------t~-~F~~~~dp~f~~~~~~-------------------------~~~~~~~F~Sy~G~v~~~dlsg~~~  217 (342)
T PF06433_consen  171 AQKS-------TK-VFDPDDDPLFEHPAYS-------------------------RDGGRLYFVSYEGNVYSADLSGDSA  217 (342)
T ss_dssp             EEEE-------EE-ESSTTTS-B-S--EEE-------------------------TTTTEEEEEBTTSEEEEEEETTSSE
T ss_pred             eEee-------cc-ccCCCCcccccccceE-------------------------CCCCeEEEEecCCEEEEEeccCCcc
Confidence            3211       01 111110 000 00000                         1122344556677766665543221


Q ss_pred             Cee-e---e-------cCcccceeEEEECCCCcEEEEEE---C-----CC--cEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978          352 PKT-R---M-------TGHQQLVNHVYFSPDGQWVASAS---F-----DK--SIKLWNGTTGKFVAVFRGHVGPVYQISW  410 (473)
Q Consensus       352 ~~~-~---~-------~~~~~~v~~v~~sp~g~~lasgs---~-----d~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~  410 (473)
                      ... .   .       ....+.-.-+++++..+.|..--   .     |+  .|-++|+.+++.+..+.. ..++.+++.
T Consensus       218 ~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~V  296 (342)
T PF06433_consen  218 KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAV  296 (342)
T ss_dssp             EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEE
T ss_pred             cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEE
Confidence            000 0   0       00112234478887655444432   1     22  377779999999888764 246889999


Q ss_pred             ecCCC-EEEEEe-CCCcEEEEECCCCceeecccc
Q 011978          411 SADSR-LLLSGS-KDSTLKVWDIRTQKLKQDLPG  442 (473)
Q Consensus       411 sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~~~  442 (473)
                      +.|.+ +|++.+ .++.+.+||..+++.+.++.+
T Consensus       297 sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  297 SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            99876 565544 578999999999998877764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.0029  Score=62.57  Aligned_cols=126  Identities=10%  Similarity=0.173  Sum_probs=84.3

Q ss_pred             eEEEEeCCCCCC---Ce----eeecC-----cccceeEEEECCCCcEEEEEECCCcEEEEeCC----CCceEEEeeCCcc
Q 011978          340 TMFLWEPAVSKQ---PK----TRMTG-----HQQLVNHVYFSPDGQWVASASFDKSIKLWNGT----TGKFVAVFRGHVG  403 (473)
Q Consensus       340 ~i~iwd~~~~~~---~~----~~~~~-----~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~----~~~~~~~~~~h~~  403 (473)
                      .+++|++.....   |.    .++..     .+.++.++++|.+-+.+|+|-.+|.|..+...    .|..........+
T Consensus        93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~  172 (933)
T KOG2114|consen   93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKE  172 (933)
T ss_pred             EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCC
Confidence            589999764321   11    12222     34568899999999999999999999988532    1211111122357


Q ss_pred             CEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978          404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQK-LKQDLPGHADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       404 ~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                      +|+.+++..+++-++-+..-..|.+|.+.... ....+..|...+++..+++....+++++..
T Consensus       173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e  235 (933)
T KOG2114|consen  173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE  235 (933)
T ss_pred             CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc
Confidence            99999999999863334445679999987443 244577777788898888766546666553

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.69  E-value=0.0096  Score=56.95  Aligned_cols=218  Identities=15%  Similarity=0.213  Sum_probs=107.2

Q ss_pred             CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (473)
Q Consensus       149 ~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~  228 (473)
                      .......+.++|+|+.++. +.+|.-.++.....+..      ..+.-....|.+      .+.+++-...++|+|+.--
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k------~~G~g~~~vw~~------~n~yAv~~~~~~I~I~kn~   97 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK------AFGSGLSFVWSS------RNRYAVLESSSTIKIYKNF   97 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE------EEEE-SEEEE-T------SSEEEEE-TTS-EEEEETT
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc------ccCceeEEEEec------CccEEEEECCCeEEEEEcC
Confidence            3445778999999998887 56788888874332211      011122344543      2468877778888886322


Q ss_pred             CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978          229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (473)
Q Consensus       229 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (473)
                      .......+.. ...+..+- .  |.++....++.|.+||..+++.++++..                             
T Consensus        98 ~~~~~k~i~~-~~~~~~If-~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v-----------------------------  144 (443)
T PF04053_consen   98 KNEVVKSIKL-PFSVEKIF-G--GNLLGVKSSDFICFYDWETGKLIRRIDV-----------------------------  144 (443)
T ss_dssp             EE-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----------------------------
T ss_pred             ccccceEEcC-CcccceEE-c--CcEEEEECCCCEEEEEhhHcceeeEEec-----------------------------
Confidence            2211111111 11222222 1  5444444555899999988877665431                             


Q ss_pred             CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (473)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd  388 (473)
                                                                          ..|..|.|+++|.++|..+.+ .+.+++
T Consensus       145 ----------------------------------------------------~~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  145 ----------------------------------------------------SAVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             -----------------------------------------------------E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             ----------------------------------------------------CCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence                                                                125678899999999998866 677776


Q ss_pred             CCCC-----------ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC
Q 011978          389 GTTG-----------KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE  457 (473)
Q Consensus       389 ~~~~-----------~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~  457 (473)
                      ....           .....+..-...|.+..|..| .++.+...  .++-+  ..|.. ..+..-..+++=+.+.|..+
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkYl--~~Ge~-~~i~~ld~~~yllgy~~~~~  245 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLKYL--VNGET-GIIAHLDKPLYLLGYLPKEN  245 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEEEE--ETTEE-EEEEE-SS--EEEEEETTTT
T ss_pred             ecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEEEE--EcCCc-ceEEEcCCceEEEEEEccCC
Confidence            5432           022222222457888888766 44444332  55552  22322 12222234677788888778


Q ss_pred             EEEEEeCCCcEEec
Q 011978          458 KVASGGKDRVLKLW  471 (473)
Q Consensus       458 ~l~s~~~D~~i~~w  471 (473)
                      .+...+.|+.+..+
T Consensus       246 ~ly~~Dr~~~v~~~  259 (443)
T PF04053_consen  246 RLYLIDRDGNVISY  259 (443)
T ss_dssp             EEEEE-TT--EEEE
T ss_pred             EEEEEECCCCEEEE
Confidence            88888888877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.68  E-value=0.044  Score=50.49  Aligned_cols=108  Identities=20%  Similarity=0.301  Sum_probs=53.0

Q ss_pred             eeEEEECCCCcEEEEEE-----CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC-------------
Q 011978          363 VNHVYFSPDGQWVASAS-----FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS-------------  424 (473)
Q Consensus       363 v~~v~~sp~g~~lasgs-----~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg-------------  424 (473)
                      +.-=-|.|||..|..-+     .+..|.-+|+.+++.....+  ..+..-+.-++||++++.=+.|.             
T Consensus       240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~  317 (386)
T PF14583_consen  240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIE  317 (386)
T ss_dssp             EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE----------------
T ss_pred             cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceec
Confidence            33346889998776533     24457777888876543322  23444556678999887644442             


Q ss_pred             ---cEEEEECCCCceee---------cccccCC-CEEEEEEeeCCCEEEEE-eCCCcEEecc
Q 011978          425 ---TLKVWDIRTQKLKQ---------DLPGHAD-EVFAVDWSPDGEKVASG-GKDRVLKLWM  472 (473)
Q Consensus       425 ---~i~iwd~~~~~~~~---------~~~~h~~-~i~~l~~s~d~~~l~s~-~~D~~i~~w~  472 (473)
                         -|+++++..++...         .+.++.. .=-...|||||++++-. ...|...||.
T Consensus       318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence               45667777654321         1222211 12467999999988654 4567666653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.66  E-value=2.4e-05  Score=73.97  Aligned_cols=198  Identities=17%  Similarity=0.320  Sum_probs=113.4

Q ss_pred             CCCEEEEEECCCC--CeEEEEecCCeEEEeeCCCCccc-cccCCCcCCcEEEEEeceeccCCCCceEEEe----eCCCcE
Q 011978          150 KNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSA----SKDGDA  222 (473)
Q Consensus       150 ~~~v~~l~~s~dg--~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~----s~dg~i  222 (473)
                      ...+.|++++-+.  ..++.|..+|.|.+-..+...-. .....+|....++++|++..    ...++.|    -.|..+
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD----tn~LAagldkhrnds~~  131 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD----TNHLAAGLDKHRNDSSL  131 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc----HHHHHhhhhhhcccCCc
Confidence            3457777776543  46778888999998876543222 34566777788889998862    3345544    235679


Q ss_pred             EEEECCCCeE----EEEecC-ccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceee
Q 011978          223 RIWDVSLRKC----VICLSG-HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (473)
Q Consensus       223 ~iwd~~~~~~----~~~~~~-h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  296 (473)
                      .|||+.++-.    -..+.+ -.....+++|..+. .+++|...+.+.++|++....                       
T Consensus       132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-----------------------  188 (783)
T KOG1008|consen  132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-----------------------  188 (783)
T ss_pred             cceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-----------------------
Confidence            9999876521    011111 11122344454333 244455555555555542100                       


Q ss_pred             eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEE
Q 011978          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWV  375 (473)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l  375 (473)
                                                                               ....-....+..+.++| .+.|+
T Consensus       189 ---------------------------------------------------------~~~svnTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  189 ---------------------------------------------------------SVSSVNTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             ---------------------------------------------------------hhhhhhhhhcccceecCCCCCce
Confidence                                                                     00001122355567788 77888


Q ss_pred             EEEECCCcEEEEe-CCCCc-eEEEeeCCcc----CEEEEEEecCCC-EEEEEeC-CCcEEEEECC
Q 011978          376 ASASFDKSIKLWN-GTTGK-FVAVFRGHVG----PVYQISWSADSR-LLLSGSK-DSTLKVWDIR  432 (473)
Q Consensus       376 asgs~d~~v~lwd-~~~~~-~~~~~~~h~~----~v~~v~~sp~g~-~l~s~s~-Dg~i~iwd~~  432 (473)
                      ++-. ||.|-+|| .+.-+ ++..+.....    .+..++|+|... .+++.+. .++|+++|+.
T Consensus       212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            8766 89999999 33322 2222221122    488999999543 4555554 5689999985

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0004  Score=65.97  Aligned_cols=92  Identities=15%  Similarity=0.213  Sum_probs=74.9

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE-EEEEecCCCEEEEEeCCCcEEEEECCCCceeec-
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY-QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-  439 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~-  439 (473)
                      .+.-+.|+|.-.+||++..+|.|-+.... .+.+.++.-|...++ +++|.|||+.||.|=.||+|++-|+.++..+.. 
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            46678899999999999999999888877 666777776666677 999999999999999999999999998766554 


Q ss_pred             ccccCCCEEEEEEee
Q 011978          440 LPGHADEVFAVDWSP  454 (473)
Q Consensus       440 ~~~h~~~i~~l~~s~  454 (473)
                      ...-...|...-|++
T Consensus       101 ~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  101 LFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccchheeeccc
Confidence            223445777888863

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.00014  Score=71.21  Aligned_cols=106  Identities=20%  Similarity=0.298  Sum_probs=83.3

Q ss_pred             EEEECCCCcEEEEEEC----CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc
Q 011978          365 HVYFSPDGQWVASASF----DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL  440 (473)
Q Consensus       365 ~v~~sp~g~~lasgs~----d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~  440 (473)
                      -..|+|...++|.++.    .|+|.||- ++|++...... .-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-...
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~   97 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV   97 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence            3578999999988874    47888873 45554322111 112567999999889999988999999998877665556


Q ss_pred             cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          441 PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       441 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ..|..+|..+.||++|..|++++.-|.+.+|.
T Consensus        98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr  129 (1416)
T KOG3617|consen   98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR  129 (1416)
T ss_pred             cCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence            67899999999999999999999999999995

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.56  E-value=0.07  Score=52.38  Aligned_cols=101  Identities=13%  Similarity=0.158  Sum_probs=71.6

Q ss_pred             ECCCCcEEEEEECCCcEEEEeCCC----C-ceEEEeeCCccCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCce-----
Q 011978          368 FSPDGQWVASASFDKSIKLWNGTT----G-KFVAVFRGHVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKL-----  436 (473)
Q Consensus       368 ~sp~g~~lasgs~d~~v~lwd~~~----~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~-----  436 (473)
                      +.++|++...+  ++.|.+.|..+    + +.+..+.- ......+.+||||+++++++. +.+|-|.|+.+.+.     
T Consensus       284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            34577776653  57899999988    3 44444432 234677999999998887765 88999999987542     


Q ss_pred             -------eecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          437 -------KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       437 -------~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                             ..+..-..+ -...+|.++|+.+.|.--|..|-.|+
T Consensus       361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn  402 (635)
T PRK02888        361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWN  402 (635)
T ss_pred             CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEe
Confidence                   122221122 24678999999999999999999996

>smart00320 WD40 WD40 repeats

Probab=97.54  E-value=0.00033  Score=40.89  Aligned_cols=37  Identities=38%  Similarity=0.609  Sum_probs=32.2

Q ss_pred             eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus       142 ~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      +...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3445567888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.53  E-value=0.019  Score=56.21  Aligned_cols=143  Identities=13%  Similarity=0.062  Sum_probs=81.1

Q ss_pred             EECCCCCeEEEEe-CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC----eEEEeeCCCCccccccC
Q 011978          115 AFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG----ELQCWDPQTGKPSGNPL  189 (473)
Q Consensus       115 ~~sp~~~~lat~s-~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg----~i~iwd~~~~~~~~~~~  189 (473)
                      =++|||+.+...+ ..+.+.+.|.++.+....+.--. .-.-++++|||+++++.+.+.    ++..-+..         
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~---------  268 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA---------  268 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccc---------
Confidence            3677887764333 45778888988766555543222 235678999999998887532    12222211         


Q ss_pred             CCcCCcEEEEEece-eccCCCCceEEEeeCCCcEEEEECCC-----CeEEEEecCccccEEEEEecCCCe--EEEeecCC
Q 011978          190 SGHKKWITGISWEP-VHLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLAVTCVKWGGDGV--IYTGSQDC  261 (473)
Q Consensus       190 ~~~~~~v~~i~~~~-~~~~~~~~~~~s~s~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~  261 (473)
                        -...+..+.|.. .....+++....  .++.|.+.|..+     .+.+..+. -......+.++|||.  ++++..+.
T Consensus       269 --e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~  343 (635)
T PRK02888        269 --ERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSP  343 (635)
T ss_pred             --cCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCC
Confidence              111122222111 011122222222  356799999887     33333332 233456688899984  55677899


Q ss_pred             eEEEEECCCCc
Q 011978          262 TIKVWETTQGK  272 (473)
Q Consensus       262 ~i~~wd~~~~~  272 (473)
                      ++.+.|+.+.+
T Consensus       344 tVSVIDv~k~k  354 (635)
T PRK02888        344 TVTVIDVRKLD  354 (635)
T ss_pred             cEEEEEChhhh
Confidence            99999987643

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.48  E-value=0.00064  Score=65.49  Aligned_cols=132  Identities=17%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce---EEE--e-eCCc
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF---VAV--F-RGHV  402 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~---~~~--~-~~h~  402 (473)
                      .+.++.|+.-|.++++....+.....+..+....+....+|++..++|.|+..|.|.++-+..+..   ...  + +.|.
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~  124 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK  124 (726)
T ss_pred             CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence            456888999999999986655544444444555677788999999999999999999997765321   111  1 2377


Q ss_pred             cCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ce---eecccccCCCEEEEEEeeCCCEEEE
Q 011978          403 GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ-KL---KQDLPGHADEVFAVDWSPDGEKVAS  461 (473)
Q Consensus       403 ~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~-~~---~~~~~~h~~~i~~l~~s~d~~~l~s  461 (473)
                      ..|++++|++|+..+++|...|.|..-.+.+. ..   .+.+-.....|..+++.. +..|++
T Consensus       125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVS  186 (726)
T KOG3621|consen  125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVS  186 (726)
T ss_pred             ceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHh
Confidence            89999999999999999999999988877661 11   122333446777887653 334443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.44  E-value=0.011  Score=56.39  Aligned_cols=128  Identities=18%  Similarity=0.177  Sum_probs=70.6

Q ss_pred             eEEEecCCceE--EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-C--cEEEEeCCCCceEEEeeCCccCE
Q 011978          331 RLVSGSDDFTM--FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPV  405 (473)
Q Consensus       331 ~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v  405 (473)
                      .+++...|+..  ++.|+....  ..++....+.-..-.|+|||++|+..+.. |  .|.+.|.+.+... .+....+.-
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~  328 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGN  328 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCC
Confidence            45566666654  445554433  22233333333356799999999987754 3  3666676655542 222222222


Q ss_pred             EEEEEecCCCEEEEEeC-CCc--EEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978          406 YQISWSADSRLLLSGSK-DST--LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG  462 (473)
Q Consensus       406 ~~v~~sp~g~~l~s~s~-Dg~--i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~  462 (473)
                      ..-.|||||++|+..+. +|.  |.+.|+.++...+.+. +......-+|.++|+.+...
T Consensus       329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence            26789999999888774 344  6666666554333332 12222344566666665543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.39  E-value=0.0058  Score=61.84  Aligned_cols=94  Identities=17%  Similarity=0.220  Sum_probs=67.0

Q ss_pred             EEEEEECCCcEEEEeCCCC-ceEEEeeC----CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEE
Q 011978          374 WVASASFDKSIKLWNGTTG-KFVAVFRG----HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF  448 (473)
Q Consensus       374 ~lasgs~d~~v~lwd~~~~-~~~~~~~~----h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~  448 (473)
                      -...|-.++.+..||.+-. ..+..-..    .....+|++-+.+| +||.||.+|.||+||--..+....+++-.++|.
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPII  622 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCee
Confidence            3455667788999998853 22211111    23346677766666 789999999999999654445567888889999


Q ss_pred             EEEEeeCCCEEEEEeCCCcE
Q 011978          449 AVDWSPDGEKVASGGKDRVL  468 (473)
Q Consensus       449 ~l~~s~d~~~l~s~~~D~~i  468 (473)
                      +|+.+.||+|++..+....+
T Consensus       623 ~iDvt~DGkwilaTc~tyLl  642 (794)
T PF08553_consen  623 GIDVTADGKWILATCKTYLL  642 (794)
T ss_pred             EEEecCCCcEEEEeecceEE
Confidence            99999999998776665443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.32  E-value=0.16  Score=48.67  Aligned_cols=66  Identities=15%  Similarity=0.109  Sum_probs=42.1

Q ss_pred             ECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978          368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK  437 (473)
Q Consensus       368 ~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~  437 (473)
                      ++.+....+....++.+.+.+....+.   +. ..+++..++.||+|++||.-..+|.+.+....-.+..
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~  251 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL  251 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccccee
Confidence            444555555545555555433222111   11 2468999999999999999999999998876544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.30  E-value=0.16  Score=47.94  Aligned_cols=82  Identities=16%  Similarity=0.261  Sum_probs=54.2

Q ss_pred             ecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccC----EEEEEEecC--------------CCEE
Q 011978          356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP----VYQISWSAD--------------SRLL  417 (473)
Q Consensus       356 ~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~----v~~v~~sp~--------------g~~l  417 (473)
                      +......+.+++.+|++++.|+...=|.|.|+|+.++..++.++|-.+.    +....-...              ..+|
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            3344556889999999999998877799999999999888877764332    111111110              1122


Q ss_pred             -EEEeCCCcEEEEECCCCcee
Q 011978          418 -LSGSKDSTLKVWDIRTQKLK  437 (473)
Q Consensus       418 -~s~s~Dg~i~iwd~~~~~~~  437 (473)
                       +-+-.-|.|.||+++.+..+
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRV  403 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEE
Confidence             23456778888888776543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.005  Score=57.67  Aligned_cols=146  Identities=16%  Similarity=0.314  Sum_probs=97.2

Q ss_pred             EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      +.++..-..++-.|++.|+.+..++.+.. |+-+.+.|+....                             ...++.-+
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~-----------------------------Ql~~e~Tl  398 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFA-----------------------------QLTSEQTL  398 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchh-----------------------------cccccccE
Confidence            44666777888889999999988877665 5555555442210                             01133455


Q ss_pred             EecCCceEEEEeCCCCCCCe-eeecCc----ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEE
Q 011978          334 SGSDDFTMFLWEPAVSKQPK-TRMTGH----QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~-~~~~~~----~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v  408 (473)
                      .|-.|..++-||++...... ....+|    .....|.+-..+| +||.||.+|.||+||--....-..+.+-..+|..|
T Consensus       399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV  477 (644)
T KOG2395|consen  399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV  477 (644)
T ss_pred             EeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence            67778899999987554321 112222    2345666655554 79999999999999973222334567777899999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEEC
Q 011978          409 SWSADSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       409 ~~sp~g~~l~s~s~Dg~i~iwd~  431 (473)
                      ..+.||++|+..+ +..+.+-+.
T Consensus       478 dvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  478 DVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             EeeccCcEEEEec-ccEEEEEEE
Confidence            9999999887554 566666664

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.19  E-value=0.23  Score=47.66  Aligned_cols=139  Identities=14%  Similarity=0.135  Sum_probs=75.0

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~  189 (473)
                      ....++++|+|+.++. ++||...||.....+....     +.-....|.+.+ .+|+-..+++|.++.--+.+......
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~  106 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIK  106 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT----
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEc
Confidence            3567899999999888 5778888887443333222     223457788855 56666668889996322221111111


Q ss_pred             CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEEC
Q 011978          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET  268 (473)
Q Consensus       190 ~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~  268 (473)
                      ..+  .+..+-.        + .++....++.|.+||+.+++.+..+.-.  +|..+.|++++.+++-..+.++.+++.
T Consensus       107 ~~~--~~~~If~--------G-~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~  172 (443)
T PF04053_consen  107 LPF--SVEKIFG--------G-NLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKY  172 (443)
T ss_dssp             -SS---EEEEE---------S-SSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred             CCc--ccceEEc--------C-cEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence            111  1222211        2 3444445558999999999998887533  488999999986666555667777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.14  E-value=0.041  Score=40.75  Aligned_cols=100  Identities=16%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             eeEEEECC---CC-cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978          363 VNHVYFSP---DG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ  438 (473)
Q Consensus       363 v~~v~~sp---~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~  438 (473)
                      |+++++..   || +.|+.||.|..||+|+-.  +.+..+.. .+.|++++-... ..++.+-.+|+|-+|+-..  .+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence            45555544   32 579999999999999744  56666654 457888877666 5677788899999997643  222


Q ss_pred             cccccCCCEEEEEEee-C--C-CEEEEEeCCCcEE
Q 011978          439 DLPGHADEVFAVDWSP-D--G-EKVASGGKDRVLK  469 (473)
Q Consensus       439 ~~~~h~~~i~~l~~s~-d--~-~~l~s~~~D~~i~  469 (473)
                      .++... .++++.+.. +  | ..|++|=.+|.|-
T Consensus        76 RiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            333322 355554432 2  2 2688888888764

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.12  E-value=0.00013  Score=69.14  Aligned_cols=161  Identities=22%  Similarity=0.393  Sum_probs=100.8

Q ss_pred             ccccCCcccEEEEEECCC-CCeEEEEe----CCCeEEEEeCCCC--cee--EEEc-CCCCCEEEEEECCCCCeEEEEecC
Q 011978          102 ATIAGHTEAVLSVAFSPD-GRQLASGS----GDTTVRLWDLNTQ--TPM--FKCT-GHKNWVLCIAWSADGKHLVSGSKA  171 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~-~~~lat~s----~d~~i~iwd~~~~--~~~--~~~~-~~~~~v~~l~~s~dg~~l~s~~~d  171 (473)
                      ....+|....++++|++- ..+||+|-    .|..+.|||+.++  .|.  ..+. +......+++|-.|.+.+++|...
T Consensus        96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s  175 (783)
T KOG1008|consen   96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS  175 (783)
T ss_pred             eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence            345678889999999984 45666662    4678999999876  222  1122 244556688999888888999888


Q ss_pred             CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC-CCCeE-EEEec----CccccEEE
Q 011978          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV-SLRKC-VICLS----GHTLAVTC  245 (473)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~-~~~~~-~~~~~----~h~~~v~~  245 (473)
                      ..+.++|++..-....  .-.++.+.++...|...    +++++ ..||.+.+||. ..-+- +..+.    .....+..
T Consensus       176 r~~~ifdlRqs~~~~~--svnTk~vqG~tVdp~~~----nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~  248 (783)
T KOG1008|consen  176 RSVHIFDLRQSLDSVS--SVNTKYVQGITVDPFSP----NYFCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFA  248 (783)
T ss_pred             chhhhhhhhhhhhhhh--hhhhhhcccceecCCCC----Cceec-cccCceeeccchhhhccHHHHHhhCCCCcccceee
Confidence            8999999863321111  11233445555555322    34544 44999999993 32221 11111    11124777


Q ss_pred             EEecC--CCeEEEeecC-CeEEEEECC
Q 011978          246 VKWGG--DGVIYTGSQD-CTIKVWETT  269 (473)
Q Consensus       246 ~~~~~--~~~l~s~~~d-~~i~~wd~~  269 (473)
                      ++|.|  .|.+++...| ++|+++|..
T Consensus       249 ~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  249 LAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             EEeccCCcchhhhhccCcceEEEeccc
Confidence            88876  4677777655 689999864

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.0015  Score=66.02  Aligned_cols=97  Identities=20%  Similarity=0.262  Sum_probs=73.3

Q ss_pred             CCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC---
Q 011978          371 DGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE---  446 (473)
Q Consensus       371 ~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~---  446 (473)
                      .+..++.|++.|.+-..|.... ++...=..-.++|++++|+.||+.++.|-.+|.|.+||+..++..+.+..|..+   
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            4567888988888888886642 111111223579999999999999999999999999999998888777666554   


Q ss_pred             EEEEEEeeCCCEEEEEeCCCc
Q 011978          447 VFAVDWSPDGEKVASGGKDRV  467 (473)
Q Consensus       447 i~~l~~s~d~~~l~s~~~D~~  467 (473)
                      |..+.|..++..+.+++..|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            445567777777888888775

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.07  E-value=0.0053  Score=58.43  Aligned_cols=120  Identities=23%  Similarity=0.373  Sum_probs=74.3

Q ss_pred             ceEEEEeCCCCCCCeee-ecCcccceeEEEECCCCcEEEEEE-CCCc--EEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978          339 FTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASAS-FDKS--IKLWNGTTGKFVAVFRGHVGPVYQISWSADS  414 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~-~~~~~~~v~~v~~sp~g~~lasgs-~d~~--v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g  414 (473)
                      ..++++++.....+... ..++   -..-+|+|||+.|+-.+ .||.  |.+.|+..+.... +..-.+.-..=.|+|||
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG  293 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDG  293 (425)
T ss_pred             ceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCC
Confidence            45777777665544322 2222   23457999999888654 4554  6667877766333 44333333467899999


Q ss_pred             CEEEEEeC-CC--cEEEEECCCCcee-ecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978          415 RLLLSGSK-DS--TLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       415 ~~l~s~s~-Dg--~i~iwd~~~~~~~-~~~~~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      +.|+-.|. .|  .|.++|+..+... .+..+....  .-.|||||++|+..+.
T Consensus       294 ~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~  345 (425)
T COG0823         294 SKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESS  345 (425)
T ss_pred             CEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEec
Confidence            98887664 44  4667777665432 222222222  6689999999988774

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.05  E-value=0.0019  Score=53.87  Aligned_cols=102  Identities=19%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             CCcEEEEEECCCcEEEEeCCC-CceEEEeeCCccCE-EEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC-CCE
Q 011978          371 DGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPV-YQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-DEV  447 (473)
Q Consensus       371 ~g~~lasgs~d~~v~lwd~~~-~~~~~~~~~h~~~v-~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~-~~i  447 (473)
                      -+.-+++|+.+|.|++|+... +.....+..-...| .-+.--.++.+..+++.||.|+.|++...+......+|. .++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            356789999999999998762 11111111111122 222223355688889999999999999988887777776 556


Q ss_pred             EEEEEeeCCCEEEEE--eCCCcEEecc
Q 011978          448 FAVDWSPDGEKVASG--GKDRVLKLWM  472 (473)
Q Consensus       448 ~~l~~s~d~~~l~s~--~~D~~i~~w~  472 (473)
                      ..+..+..++.++++  |.|..++.|.
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~  175 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWN  175 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcc
Confidence            566666667788888  8888888885

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.05  E-value=0.32  Score=46.56  Aligned_cols=68  Identities=16%  Similarity=0.289  Sum_probs=46.5

Q ss_pred             cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC-ccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH-VGPVYQISWSADSRLLLSGSKDSTLKVWD  430 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd  430 (473)
                      +.+..+++||+|++||.-..+|.+.+.+..-.+.+..+.-. ......+.|.-++..++.-  ...+.+..
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            56899999999999999999999999876655555555433 3456677787654433322  33455544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.05  E-value=0.03  Score=41.45  Aligned_cols=99  Identities=21%  Similarity=0.336  Sum_probs=58.5

Q ss_pred             EEEEEECC---CC-CeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978          153 VLCIAWSA---DG-KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (473)
Q Consensus       153 v~~l~~s~---dg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~  228 (473)
                      |++|++..   || +.|+.|+.|..|++|+-..-.  . .... ...|+.+.-.      ...+|+.+-.+|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~--~-Ei~e-~~~v~~L~~~------~~~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV--A-EITE-TDKVTSLCSL------GGGRFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE--E-EEec-ccceEEEEEc------CCCEEEEEecCCEEEEEeCc
Confidence            55666543   33 589999999999999754321  1 1111 2334444322      23579999999999988753


Q ss_pred             CCeEEEEecCccccEEEEEe---cCCC--eEEEeecCCeEE
Q 011978          229 LRKCVICLSGHTLAVTCVKW---GGDG--VIYTGSQDCTIK  264 (473)
Q Consensus       229 ~~~~~~~~~~h~~~v~~~~~---~~~~--~l~s~~~d~~i~  264 (473)
                      .+  +...+... .+.++.+   +.||  .|++|-.+|.|-
T Consensus        72 ~R--lWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 QR--LWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ce--eeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            32  22222222 2455443   3445  588898888764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.00  E-value=0.19  Score=43.12  Aligned_cols=67  Identities=16%  Similarity=0.119  Sum_probs=46.8

Q ss_pred             EECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       115 ~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      ...+++..+..|+.|++.+.-|..+...+.+.+.......+-+..|-...|+.+...|.+.--+.++
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence            4567899999999999999999999888877665444444455556334566666666665544443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.97  E-value=0.0024  Score=59.94  Aligned_cols=95  Identities=28%  Similarity=0.388  Sum_probs=63.0

Q ss_pred             CCCCcEEEEEE---------CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee-
Q 011978          369 SPDGQWVASAS---------FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ-  438 (473)
Q Consensus       369 sp~g~~lasgs---------~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~-  438 (473)
                      |||+++++...         ..+.+.++|+.+++....... ...+....|||+|+.+|-.. ++.|++++..+++..+ 
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            57777776632         245789999999876544433 56788999999999999886 6789999987664332 


Q ss_pred             ccccc----------------CCCEEEEEEeeCCCEEEEEeCC
Q 011978          439 DLPGH----------------ADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       439 ~~~~h----------------~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                      +..|.                -+.-.++-|||||++||...-|
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            22220                0112468899999999987654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.90  E-value=0.26  Score=43.19  Aligned_cols=197  Identities=15%  Similarity=0.217  Sum_probs=96.3

Q ss_pred             EecCccccEEEEEecCC-CeEE-EeecCCeEEEEECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCcccCCHH
Q 011978          235 CLSGHTLAVTCVKWGGD-GVIY-TGSQDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (473)
Q Consensus       235 ~~~~h~~~v~~~~~~~~-~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (473)
                      .+.+-...++.++|+++ +.|+ .....+.|.-.+. +|+.++.+...+ .....+++..                    
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g--------------------   74 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG--------------------   74 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S--------------------
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC--------------------
Confidence            34555667999999986 4454 4566778877775 577777654432 2233333221                    


Q ss_pred             HHHHHHHhhhhcccCCCCceEEE-ecCCceEEEEeCCCCCCC--ee-----ee---cCcccceeEEEECCCCcEEEEEEC
Q 011978          312 EMKKAALERYNKIKGNAPERLVS-GSDDFTMFLWEPAVSKQP--KT-----RM---TGHQQLVNHVYFSPDGQWVASASF  380 (473)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~--~~-----~~---~~~~~~v~~v~~sp~g~~lasgs~  380 (473)
                                       +..++. .-.++.+.+.+.......  ..     .+   ..+...+..++|+|.++.|..+-.
T Consensus        75 -----------------~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE  137 (248)
T PF06977_consen   75 -----------------NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE  137 (248)
T ss_dssp             -----------------TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE
T ss_pred             -----------------CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC
Confidence                             122333 333666776665322111  10     01   123345889999998777777777


Q ss_pred             CCcEEEEeCCC---CceEEEe--------eCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceee--cccc--c-
Q 011978          381 DKSIKLWNGTT---GKFVAVF--------RGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQ--DLPG--H-  443 (473)
Q Consensus       381 d~~v~lwd~~~---~~~~~~~--------~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~--~~~~--h-  443 (473)
                      ..-.++|....   ...+...        .....-+.+++++|.. ++++....+..|.++|. .|+.+.  .+..  | 
T Consensus       138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~g  216 (248)
T PF06977_consen  138 RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHG  216 (248)
T ss_dssp             SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG
T ss_pred             CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccC
Confidence            66666666543   2221111        1123457899999964 55666666778888984 455433  2222  1 


Q ss_pred             ----CCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          444 ----ADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       444 ----~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                          -..--.++|.++|+..++. +-+...+|
T Consensus       217 l~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  217 LSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             -SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             cccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence                1245689999999765554 44544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.80  E-value=0.013  Score=58.47  Aligned_cols=103  Identities=20%  Similarity=0.178  Sum_probs=64.6

Q ss_pred             cceeEEEECCCCcEEEEEE------CCC--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC---------
Q 011978          361 QLVNHVYFSPDGQWVASAS------FDK--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---------  423 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs------~d~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---------  423 (473)
                      ..+.+.+++|+|+.+|...      .|.  .+.+++. .+.......+.  ..+.-.|+|||..|++.+..         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            4578899999999888765      244  4555554 23332333333  37788999999877776532         


Q ss_pred             ---CcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          424 ---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       424 ---g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                         +.+.+.++..+....   .....|..+.|||||+.++.... ++|.+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-g~v~V  472 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-GKVYL  472 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence               233333444443322   22346999999999999987663 55443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.75  E-value=0.4  Score=43.19  Aligned_cols=146  Identities=16%  Similarity=0.154  Sum_probs=82.8

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc--------
Q 011978          118 PDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP--------  188 (473)
Q Consensus       118 p~~~~lat~s~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~--------  188 (473)
                      ..++.|+.|..+| +.+++... ..+....  +...|..+...|+-+.|++-+ |+.++++++..-......        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3578899999988 89999832 2222222  233499999999877777665 499999998653322100        


Q ss_pred             -----CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-----eEEEEecCccccEEEEEecCCCeEEEee
Q 011978          189 -----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-----KCVICLSGHTLAVTCVKWGGDGVIYTGS  258 (473)
Q Consensus       189 -----~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~l~s~~  258 (473)
                           .......+...+   ..........+.....+++.+|.....     +....+. -...+.+++|.++ .++.|.
T Consensus        81 ~~~~~~~~~~~~v~~f~---~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~-~i~v~~  155 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFA---VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN-KICVGT  155 (275)
T ss_pred             ccccccccccCCeeEEe---eccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC-EEEEEe
Confidence                 001111122222   111112334555566668888877542     2333332 2356788888844 444454


Q ss_pred             cCCeEEEEECCCCce
Q 011978          259 QDCTIKVWETTQGKL  273 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~  273 (473)
                      . +...+.|+.++..
T Consensus       156 ~-~~f~~idl~~~~~  169 (275)
T PF00780_consen  156 S-KGFYLIDLNTGSP  169 (275)
T ss_pred             C-CceEEEecCCCCc
Confidence            3 4467778876654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.75  E-value=0.69  Score=45.90  Aligned_cols=117  Identities=13%  Similarity=0.057  Sum_probs=65.8

Q ss_pred             CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEE-Ee--ceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC
Q 011978          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI-SW--EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (473)
Q Consensus       162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i-~~--~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~  238 (473)
                      +..|+.++.++.|+-.|..+|+..-.....-...+... ..  ..........+++.++.|+.+.-.|..+++.+.....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence            44677777778888888888875433211100001000 00  0000001124677788899999999999988765432


Q ss_pred             --cc--ccEEEEEecCCCeEEEee------cCCeEEEEECCCCceeeeee
Q 011978          239 --HT--LAVTCVKWGGDGVIYTGS------QDCTIKVWETTQGKLIRELK  278 (473)
Q Consensus       239 --h~--~~v~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~  278 (473)
                        +.  ..+++.-.-.++.++.+.      .+|.|.-+|.++|+.+..+.
T Consensus       149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence              11  112211111145666554      26899999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.75  E-value=0.47  Score=43.91  Aligned_cols=131  Identities=15%  Similarity=0.138  Sum_probs=73.2

Q ss_pred             CceEEEEeCCCCC-CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC-CceEEEee--CCccCEEEEEEecC
Q 011978          338 DFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFR--GHVGPVYQISWSAD  413 (473)
Q Consensus       338 d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~-~~~~~~~~--~h~~~v~~v~~sp~  413 (473)
                      +..+.+|+..... ............+.++..  .+++|+.|...+.+.++..+. ...+..+.  .....++++.|-+|
T Consensus       106 g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d  183 (321)
T PF03178_consen  106 GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVD  183 (321)
T ss_dssp             TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-S
T ss_pred             cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecC
Confidence            5788888876554 111111111224444444  466999999888888875443 23222222  23446889999877


Q ss_pred             CCEEEEEeCCCcEEEEECCC-------C--ceeecccc-cCCCEEEE---EEeeC--CC------EEEEEeCCCcEEe
Q 011978          414 SRLLLSGSKDSTLKVWDIRT-------Q--KLKQDLPG-HADEVFAV---DWSPD--GE------KVASGGKDRVLKL  470 (473)
Q Consensus       414 g~~l~s~s~Dg~i~iwd~~~-------~--~~~~~~~~-h~~~i~~l---~~s~d--~~------~l~s~~~D~~i~~  470 (473)
                      +..++.+..+|.+.++....       +  +......- ..+.|+++   .+.|.  +.      .++.++.+|.|-.
T Consensus       184 ~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  184 EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            77999999999999997753       1  11111111 23567776   44452  22      4888888888763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.61  E-value=0.01  Score=49.65  Aligned_cols=105  Identities=15%  Similarity=0.221  Sum_probs=72.1

Q ss_pred             CceEEEecCCceEEEEeCCCCCCCeeeecCcccce-eEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc-cCEE
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV-NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-GPVY  406 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~-~~v~  406 (473)
                      ...+++|+.++.+.+|..............-...+ ..|..-.++.+..++..||.||.|+..-.+.+.....|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            34689999999999998652221111111111112 223333456688899999999999998888777777777 5666


Q ss_pred             EEEEecCCCEEEEE--eCCCcEEEEECCC
Q 011978          407 QISWSADSRLLLSG--SKDSTLKVWDIRT  433 (473)
Q Consensus       407 ~v~~sp~g~~l~s~--s~Dg~i~iwd~~~  433 (473)
                      .+..+..+.+++.+  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            77777777888887  8888888888764

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.53  E-value=0.11  Score=51.85  Aligned_cols=148  Identities=17%  Similarity=0.184  Sum_probs=82.5

Q ss_pred             CcccEEEEEECCCCCeEEEEe------CCC--eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC-------
Q 011978          107 HTEAVLSVAFSPDGRQLASGS------GDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-------  171 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d-------  171 (473)
                      ....+...+++|||+.+|...      .|.  .+.+++..... .....+.  ....-.|+|||+.|++....       
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence            334678899999999987654      243  45555543222 2222222  37778999998888776532       


Q ss_pred             -----CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE---EECCCCeEEE----Ee-cC
Q 011978          172 -----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI---WDVSLRKCVI----CL-SG  238 (473)
Q Consensus       172 -----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i---wd~~~~~~~~----~~-~~  238 (473)
                           +.+.+.++..+....    .....|..+.|+|     ++.+++... ++.|.+   -....+....    .+ .+
T Consensus       425 ~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSp-----DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~  494 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS----RVPGPISELQLSR-----DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG  494 (591)
T ss_pred             ccCCCceEEEEeccCchhhh----ccCCCcCeEEECC-----CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence                 233333443332211    2345688899887     555665544 356655   2323333111    11 12


Q ss_pred             ccccEEEEEecCCCeEEEeecCCeEEEEE
Q 011978          239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWE  267 (473)
Q Consensus       239 h~~~v~~~~~~~~~~l~s~~~d~~i~~wd  267 (473)
                      -...+..+.|.+++.|+.+..++...+|.
T Consensus       495 l~~~~~~l~W~~~~~L~V~~~~~~~~v~~  523 (591)
T PRK13616        495 LGDTAVSLDWRTGDSLVVGRSDPEHPVWY  523 (591)
T ss_pred             cCCccccceEecCCEEEEEecCCCCceEE
Confidence            22335778898888777666555444554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.39  E-value=0.012  Score=59.88  Aligned_cols=97  Identities=21%  Similarity=0.354  Sum_probs=68.9

Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE-
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW-  410 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~-  410 (473)
                      ++.|+..|.+...|....-.+...-..-...|++++|+.+|+.++.|-.+|.|.+||...++.++.+..|..+.+++-+ 
T Consensus       102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v  181 (1206)
T KOG2079|consen  102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV  181 (1206)
T ss_pred             EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence            6667777777666644322211111122467999999999999999999999999999999999888877766655544 


Q ss_pred             --ecCCCEEEEEeCCCcEEEEE
Q 011978          411 --SADSRLLLSGSKDSTLKVWD  430 (473)
Q Consensus       411 --sp~g~~l~s~s~Dg~i~iwd  430 (473)
                        ..++..+.++..-|.  +|.
T Consensus       182 ~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  182 GRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             EEeCCCcEEEEccCCCc--eEE
Confidence              445667777777675  554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.32  E-value=1.1  Score=43.19  Aligned_cols=61  Identities=28%  Similarity=0.390  Sum_probs=40.7

Q ss_pred             ccEEEEEECCCCCeEEEE-eCC----CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec
Q 011978          109 EAVLSVAFSPDGRQLASG-SGD----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK  170 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~-s~d----~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~  170 (473)
                      ..+....+||||+++|.+ +..    ..++++|+.+++.+...-... ....+.|.+|++.|+....
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~  189 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRF  189 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEEC
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEe
Confidence            344578899999998855 222    469999999987554221111 1223999999888776553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.28  E-value=0.11  Score=50.22  Aligned_cols=99  Identities=20%  Similarity=0.268  Sum_probs=63.0

Q ss_pred             eeEEEECCCCcEEEEE-ECCC----cEEEEeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeCCC-----------c
Q 011978          363 VNHVYFSPDGQWVASA-SFDK----SIKLWNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSKDS-----------T  425 (473)
Q Consensus       363 v~~v~~sp~g~~lasg-s~d~----~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~Dg-----------~  425 (473)
                      +...++||||+++|.+ +..|    .++++|+.+|+.+.. +..-.  -..+.|.+|++.|+....|.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            4467899999999876 3334    599999999977643 22211  12399999988766655433           3


Q ss_pred             EEEEECCCCcee--ecccccC-CC-EEEEEEeeCCCEEEEEe
Q 011978          426 LKVWDIRTQKLK--QDLPGHA-DE-VFAVDWSPDGEKVASGG  463 (473)
Q Consensus       426 i~iwd~~~~~~~--~~~~~h~-~~-i~~l~~s~d~~~l~s~~  463 (473)
                      |+.|.+.+....  ..+.... .. ...+..++|+++|+...
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~  245 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS  245 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence            788888765322  1222222 22 66889999999986543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.28  E-value=0.018  Score=35.42  Aligned_cols=31  Identities=23%  Similarity=0.455  Sum_probs=28.3

Q ss_pred             ccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      ...|..++|+|...+||.++.||.|.+|.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999884

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.24  E-value=0.021  Score=35.18  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=28.1

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCC
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLN  138 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~  138 (473)
                      ...|.+++|+|..++||.++.||.|.+|.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3468999999999999999999999999883

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.23  E-value=0.92  Score=41.32  Aligned_cols=105  Identities=17%  Similarity=0.170  Sum_probs=66.9

Q ss_pred             cCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCCC--Cc-----eEEEeeCCccCEEEEEEecCCCEEEEEeCCC-cEE
Q 011978          357 TGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT--GK-----FVAVFRGHVGPVYQISWSADSRLLLSGSKDS-TLK  427 (473)
Q Consensus       357 ~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~~--~~-----~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg-~i~  427 (473)
                      ..+-..-+.|+||||++.|..+.. .+.|.-|++..  +.     ....+..+.+..-.++...+|++-+++-.+| .|.
T Consensus       159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~  238 (307)
T COG3386         159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV  238 (307)
T ss_pred             cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence            333455678999999987777655 46777776652  21     1122223345556677777888776555554 899


Q ss_pred             EEECCCCceeecccccCCCEEEEEEe-eCCCEEEEE
Q 011978          428 VWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASG  462 (473)
Q Consensus       428 iwd~~~~~~~~~~~~h~~~i~~l~~s-~d~~~l~s~  462 (473)
                      +|+.. ++++..+.-....+++++|- |+.+.|...
T Consensus       239 ~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         239 RFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             EECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence            99988 77776665554667788875 444555433

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.10  E-value=1.2  Score=41.32  Aligned_cols=170  Identities=15%  Similarity=0.124  Sum_probs=89.4

Q ss_pred             CcEEEEECCCC----eEEEE--ecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCc-eeeeeec-cCceEEEEEecc
Q 011978          220 GDARIWDVSLR----KCVIC--LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK-LIRELKG-HGHWVNSLALST  291 (473)
Q Consensus       220 g~i~iwd~~~~----~~~~~--~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~-~~~~v~~~~~~~  291 (473)
                      |.+.++++...    ..+..  .....++|++++-- ++.++ ++..+.|.+|++...+ ....-.. ....+.++... 
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv-~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLV-VAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEE-EEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEE-EeecCEEEEEEccCcccchhhheecceEEEEEEecc-
Confidence            88999998874    12221  12345678888755 34543 4445899999988776 3332211 11233333322 


Q ss_pred             cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee--cCcccceeEEEEC
Q 011978          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFS  369 (473)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~v~~s  369 (473)
                                                           .+.++.|.....+.++............  .....++.++.|-
T Consensus       139 -------------------------------------~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l  181 (321)
T PF03178_consen  139 -------------------------------------KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL  181 (321)
T ss_dssp             -------------------------------------TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred             -------------------------------------ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence                                                 2245566555555544222111111111  1224568888888


Q ss_pred             CCCcEEEEEECCCcEEEEeCCC-------C--ceEEEeeCC-ccCEEEE---EEecC--CC------EEEEEeCCCcEEE
Q 011978          370 PDGQWVASASFDKSIKLWNGTT-------G--KFVAVFRGH-VGPVYQI---SWSAD--SR------LLLSGSKDSTLKV  428 (473)
Q Consensus       370 p~g~~lasgs~d~~v~lwd~~~-------~--~~~~~~~~h-~~~v~~v---~~sp~--g~------~l~s~s~Dg~i~i  428 (473)
                      ++++.++.+..+|.+.++....       +  ++.....-| ...|+++   ++.|.  +.      .++.++.+|.|..
T Consensus       182 ~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  182 VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             -SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             cCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            7777999999999999987642       2  222222223 2457776   44452  22      3777888999884


Q ss_pred             E
Q 011978          429 W  429 (473)
Q Consensus       429 w  429 (473)
                      .
T Consensus       262 l  262 (321)
T PF03178_consen  262 L  262 (321)
T ss_dssp             E
T ss_pred             E
Confidence            4

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=0.082  Score=49.93  Aligned_cols=141  Identities=16%  Similarity=0.170  Sum_probs=90.1

Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCC--eE-----EEEecCCeEEEeeCCCCcc-ccccCCCcCCcE
Q 011978          125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HL-----VSGSKAGELQCWDPQTGKP-SGNPLSGHKKWI  196 (473)
Q Consensus       125 t~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l-----~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v  196 (473)
                      ++.....++--|++.++.+...+-+.. |.-+.+.|+.+  +|     +.|-.++.|.-||++-... .....++| ...
T Consensus       351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k-qy~  428 (644)
T KOG2395|consen  351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK-QYS  428 (644)
T ss_pred             CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc-ccc
Confidence            444455677778888887776665655 77788888643  33     4466788899999863211 00011111 111


Q ss_pred             EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEEC
Q 011978          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET  268 (473)
Q Consensus       197 ~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~  268 (473)
                      +.-.|+.... ....+++.||.+|.||+||-.....-..+++...+|.-+..+.+|.-+.|..+..+.+-++
T Consensus       429 ~k~nFsc~aT-T~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  429 TKNNFSCFAT-TESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             cccccceeee-cCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence            1222222211 2346899999999999999633333445678888999999998997777777888877764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.08  E-value=0.86  Score=41.26  Aligned_cols=108  Identities=17%  Similarity=0.258  Sum_probs=60.1

Q ss_pred             CcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCce
Q 011978          358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI-RTQKL  436 (473)
Q Consensus       358 ~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~-~~~~~  436 (473)
                      .-...+..+..++||+++++++.-....-||.-.......-+.-...|.++.|+|++.+.+.+ ..|.|+.=+. ...+.
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            334668888899999999998776666778755433333334456789999999998876544 7787877662 11111


Q ss_pred             ----eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          437 ----KQDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       437 ----~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                          +..+....-.+..++|.+++...|+|+...
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~  254 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT  254 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence                112222223488999999988877766643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.81  E-value=1.5  Score=40.06  Aligned_cols=246  Identities=21%  Similarity=0.219  Sum_probs=118.4

Q ss_pred             EEECCCCCeEEEEe----------CCCeEEEEeCCCCceeEEE--cC-CCC----CEEEEEECCCCCeEEEEec--CCeE
Q 011978          114 VAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKC--TG-HKN----WVLCIAWSADGKHLVSGSK--AGEL  174 (473)
Q Consensus       114 ~~~sp~~~~lat~s----------~d~~i~iwd~~~~~~~~~~--~~-~~~----~v~~l~~s~dg~~l~s~~~--dg~i  174 (473)
                      +.++||++.+++++          ..-.|.+||..+-.+....  .. |..    ....++++.||++++....  ...|
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV  120 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV  120 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence            56899999988653          2346999999987665533  22 111    1223678888888876543  4568


Q ss_pred             EEeeCCCCcccccc-CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC-CCeEEEEe----cCccccEE-EEE
Q 011978          175 QCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICL----SGHTLAVT-CVK  247 (473)
Q Consensus       175 ~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~-~~~~~~~~----~~h~~~v~-~~~  247 (473)
                      .+-|+..++..... ..+      |...-|.    ....|.+-+.||++.-..+. .|+.....    .....++. .-.
T Consensus       121 tVVDl~~~kvv~ei~~PG------C~~iyP~----~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~  190 (342)
T PF06433_consen  121 TVVDLAAKKVVGEIDTPG------CWLIYPS----GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPA  190 (342)
T ss_dssp             EEEETTTTEEEEEEEGTS------EEEEEEE----ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--E
T ss_pred             EEEECCCCceeeeecCCC------EEEEEec----CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccc
Confidence            88888776643221 111      1111232    12468888999998888776 34433211    11111111 111


Q ss_pred             ec-CCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecc----cceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978          248 WG-GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST----EYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (473)
Q Consensus       248 ~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (473)
                      +. .++.++--+..|.|+--|+......- .       ....+..    ...++.+.+..                    
T Consensus       191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~-------~~~~~~t~~e~~~~WrPGG~Q~--------------------  242 (342)
T PF06433_consen  191 YSRDGGRLYFVSYEGNVYSADLSGDSAKF-G-------KPWSLLTDAEKADGWRPGGWQL--------------------  242 (342)
T ss_dssp             EETTTTEEEEEBTTSEEEEEEETTSSEEE-E-------EEEESS-HHHHHTTEEE-SSS---------------------
T ss_pred             eECCCCeEEEEecCCEEEEEeccCCcccc-c-------CcccccCccccccCcCCcceee--------------------
Confidence            21 23345556667777766665432110 0       0000000    00111111110                    


Q ss_pred             cccC-CCCceEEE--------ecCCceEEEE--eCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEE-CCCcEEEEeC
Q 011978          323 KIKG-NAPERLVS--------GSDDFTMFLW--EPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-FDKSIKLWNG  389 (473)
Q Consensus       323 ~~~~-~~~~~l~~--------~~~d~~i~iw--d~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs-~d~~v~lwd~  389 (473)
                       +.. ....+|..        .-.|..-.+|  |+...+.......  ...+.+|+++.+.+ +|.+.+ .++.+.+||.
T Consensus       243 -~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~  319 (342)
T PF06433_consen  243 -IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA  319 (342)
T ss_dssp             -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred             -eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence             000 00111111        1223333444  4443332222222  23577899998765 554444 5789999999


Q ss_pred             CCCceEEEeeC
Q 011978          390 TTGKFVAVFRG  400 (473)
Q Consensus       390 ~~~~~~~~~~~  400 (473)
                      .+|+.+...++
T Consensus       320 ~tGk~~~~~~~  330 (342)
T PF06433_consen  320 ATGKLVRSIEQ  330 (342)
T ss_dssp             TT--EEEEE--
T ss_pred             cCCcEEeehhc
Confidence            99999888764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.72  E-value=0.52  Score=41.80  Aligned_cols=99  Identities=26%  Similarity=0.315  Sum_probs=63.0

Q ss_pred             ceeEEEECCCCcEEEEEE--C-CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE-CCCCcee
Q 011978          362 LVNHVYFSPDGQWVASAS--F-DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD-IRTQKLK  437 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs--~-d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd-~~~~~~~  437 (473)
                      .+.+.+++++|+.+|...  . ...++++..... ....+.+  ..+..-.|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            578899999999887766  2 234555543322 2222233  2678889999988877777666667763 2232221


Q ss_pred             ---ecccccCCCEEEEEEeeCCCEEEEEe
Q 011978          438 ---QDLPGHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       438 ---~~~~~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                         -....-...|.++.+||||..+|...
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEE
Confidence               11221122899999999999987665

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.56  E-value=1.8  Score=39.44  Aligned_cols=61  Identities=18%  Similarity=0.206  Sum_probs=43.0

Q ss_pred             ccceeEEEECCCCcEEEEEECCC-cEEEEeCCCCceEEEeeCCccCEEEEEEe-cCCCEEEEEe
Q 011978          360 QQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLSGS  421 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d~-~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~g~~l~s~s  421 (473)
                      ....-.++...+|.+-+++..+| .|..|+.+ |+++..++-....+++++|- |+.+.|...+
T Consensus       212 ~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         212 PGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            34455677788888876555554 89999988 99988888776778888884 4555544443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.55  E-value=2.9  Score=42.02  Aligned_cols=93  Identities=17%  Similarity=0.244  Sum_probs=52.7

Q ss_pred             CCcEEEEEECCC------cEEEEeCCCCceEEE--eeCCccCEEEEEEecCCCEEEEEeCCCc-----EEEEECCCCce-
Q 011978          371 DGQWVASASFDK------SIKLWNGTTGKFVAV--FRGHVGPVYQISWSADSRLLLSGSKDST-----LKVWDIRTQKL-  436 (473)
Q Consensus       371 ~g~~lasgs~d~------~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~Dg~-----i~iwd~~~~~~-  436 (473)
                      +|...++|+.|+      ++..||..+.+....  ...-.... .++ .-++...+.|+.|+.     |..||..+.+- 
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWT  504 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence            678888888654      577888887654322  11111111 122 346778888887763     77788876543 


Q ss_pred             -eecccccCCCEEEEEEeeCCCEEEEEeCCCc
Q 011978          437 -KQDLPGHADEVFAVDWSPDGEKVASGGKDRV  467 (473)
Q Consensus       437 -~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~  467 (473)
                       ...+......+..+  .-+++..+.||.|+.
T Consensus       505 ~v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  505 MVAPMTSPRSAVGVV--VLGGKLYAVGGFDGN  534 (571)
T ss_pred             EcccCccccccccEE--EECCEEEEEecccCc
Confidence             22233222222222  235677788888874

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.33  E-value=2.7  Score=39.94  Aligned_cols=130  Identities=18%  Similarity=0.202  Sum_probs=88.0

Q ss_pred             eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC---CCcEEEEeCCCCceEEEeeCCccCEEE
Q 011978          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~---d~~v~lwd~~~~~~~~~~~~h~~~v~~  407 (473)
                      ..+....+..+.+.|............+.  ....++++|+++.+..+..   ++++.+.|..+.+.+.....-..+ ..
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~  164 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG  164 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence            34555556778888754444333333333  5677999999987777665   688999999988887765443345 88


Q ss_pred             EEEecCCCEEEEEe-CCCcEEEEECCCCceee-----cccccCCCEEEEEEeeCCCEEEEEeC
Q 011978          408 ISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQ-----DLPGHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       408 v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~-----~~~~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      ++++|+|..++.+. .++.|.+.|.......+     .+.- ...-..+.++|||+++.....
T Consensus       165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             EEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEec
Confidence            99999999666654 78899999977655542     1111 123357889999996655443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.22  E-value=2.1  Score=38.00  Aligned_cols=105  Identities=16%  Similarity=0.180  Sum_probs=66.3

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEe-CCCCceEE-Eee--CCccCEEEEEEecCCCEEEEEe---CCCcEEEEECC--
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWN-GTTGKFVA-VFR--GHVGPVYQISWSADSRLLLSGS---KDSTLKVWDIR--  432 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd-~~~~~~~~-~~~--~h~~~v~~v~~sp~g~~l~s~s---~Dg~i~iwd~~--  432 (473)
                      .+..-.|++++...+....+...+++. ..++.... ...  .-.+.|.++.+||||..+|...   .++.|++=-+.  
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            566678999988887777677777773 33333211 111  1112899999999999877665   35667776543  


Q ss_pred             -CC--ce----eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          433 -TQ--KL----KQDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       433 -~~--~~----~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                       .+  ..    ..........+.+++|.+++..++.+...+
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence             12  11    112223345789999999998777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA02713 hypothetical protein; Provisional

Probab=95.05  E-value=4  Score=40.99  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=23.5

Q ss_pred             CCcEEEEEECCC--cEEEEeCCCCceEEEeeCCc
Q 011978          371 DGQWVASASFDK--SIKLWNGTTGKFVAVFRGHV  402 (473)
Q Consensus       371 ~g~~lasgs~d~--~v~lwd~~~~~~~~~~~~h~  402 (473)
                      +|+..++|+.|+  ++..||..+.+.......|.
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence            788889999888  78888888776554444443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.87  E-value=2.5  Score=37.15  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=50.6

Q ss_pred             EEEECCCCCe-EEEEeCCCe-EEEEeCCCCceeEEEcCCCCC--EEEEEECCCCCeEEEEecC-----CeEEEeeCCCCc
Q 011978          113 SVAFSPDGRQ-LASGSGDTT-VRLWDLNTQTPMFKCTGHKNW--VLCIAWSADGKHLVSGSKA-----GELQCWDPQTGK  183 (473)
Q Consensus       113 ~~~~sp~~~~-lat~s~d~~-i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~dg~~l~s~~~d-----g~i~iwd~~~~~  183 (473)
                      .++|+|.-.+ ++.+-.-|+ ..++|..+.+....+...++.  .-.=.|||||.+|+..-.|     |.|-+||...+-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            4677776544 556655554 578898876654433211111  1112489999999875433     779999987542


Q ss_pred             cccccCCCcCCcEEEEEece
Q 011978          184 PSGNPLSGHKKWITGISWEP  203 (473)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~  203 (473)
                      ...-.+..|.-.-..+.|.+
T Consensus       152 qrvgE~~t~GiGpHev~lm~  171 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMA  171 (366)
T ss_pred             ceecccccCCcCcceeEEec
Confidence            22222344443333444443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.73  E-value=3  Score=37.45  Aligned_cols=62  Identities=21%  Similarity=0.255  Sum_probs=36.6

Q ss_pred             CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK  231 (473)
Q Consensus       161 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~  231 (473)
                      .++.|+.|+.+| +++++..........  .+...|..+...|.     -+.++.- .|+.+.++++..-.
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~-----~~~llvL-sd~~l~~~~L~~l~   67 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPE-----LNLLLVL-SDGQLYVYDLDSLE   67 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEecc-----cCEEEEE-cCCccEEEEchhhc
Confidence            467899998888 888888322221111  12223666665542     2234433 35999999986543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.70  E-value=0.53  Score=41.13  Aligned_cols=96  Identities=26%  Similarity=0.329  Sum_probs=64.7

Q ss_pred             EECCCCcEEEEEECC-----CcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeC------C-----------
Q 011978          367 YFSPDGQWVASASFD-----KSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSK------D-----------  423 (473)
Q Consensus       367 ~~sp~g~~lasgs~d-----~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~------D-----------  423 (473)
                      .|||||++|...-.|     |.|-|||.+.+ +.+..+..|.-.-..+.|.+||+.|+.+..      |           
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            599999999887554     67999998854 445667777666788999999999887642      0           


Q ss_pred             -CcEEEEECCCCcee--eccc--ccCCCEEEEEEeeCCCEEEEE
Q 011978          424 -STLKVWDIRTQKLK--QDLP--GHADEVFAVDWSPDGEKVASG  462 (473)
Q Consensus       424 -g~i~iwd~~~~~~~--~~~~--~h~~~i~~l~~s~d~~~l~s~  462 (473)
                       -.+.+.|..++.++  .+++  .+.-+|..++..+||+..+-+
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence             11233344444443  2344  344568888888888765544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.53  E-value=1.7  Score=40.99  Aligned_cols=99  Identities=15%  Similarity=0.233  Sum_probs=55.5

Q ss_pred             eeEEEECCCCcEEEEEECCCcEEEEeCCC-----Cc--eE-EEeeC----CccCEEEEEEecCCCEEEEEeCC-------
Q 011978          363 VNHVYFSPDGQWVASASFDKSIKLWNGTT-----GK--FV-AVFRG----HVGPVYQISWSADSRLLLSGSKD-------  423 (473)
Q Consensus       363 v~~v~~sp~g~~lasgs~d~~v~lwd~~~-----~~--~~-~~~~~----h~~~v~~v~~sp~g~~l~s~s~D-------  423 (473)
                      ...+++.++| ++++ +.....++.|...     ++  .+ ..+..    +......++|.|||.+.++-+..       
T Consensus        74 p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~  151 (367)
T TIGR02604        74 VTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTR  151 (367)
T ss_pred             ccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceecc
Confidence            4678888888 4443 3443333434321     12  11 22322    23457889999999876654421       


Q ss_pred             ------------CcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978          424 ------------STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       424 ------------g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                                  |.|.-+|..+++....-.++ ...+.++|+|+|+.+++-..
T Consensus       152 ~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       152 PGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             CCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccC
Confidence                        44555666554443222333 34578999999988776443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.49  E-value=7.1  Score=40.63  Aligned_cols=116  Identities=17%  Similarity=0.175  Sum_probs=69.3

Q ss_pred             CCeEEEEecCCeEEEeeCCCCccccccCCCcC-------CcEEEEEeceec-----------cCCCCceEEEeeCCCcEE
Q 011978          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-------KWITGISWEPVH-----------LNAPCRRFVSASKDGDAR  223 (473)
Q Consensus       162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~v~~i~~~~~~-----------~~~~~~~~~s~s~dg~i~  223 (473)
                      +..|+.++.++.|.-.|..+|+..-.......       ....++.+....           ......+++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            55788888889999999988876543211100       001222221100           011234777888999999


Q ss_pred             EEECCCCeEEEEecCccccE----------------EEEEecCCCeEEEeec----------CCeEEEEECCCCceeeee
Q 011978          224 IWDVSLRKCVICLSGHTLAV----------------TCVKWGGDGVIYTGSQ----------DCTIKVWETTQGKLIREL  277 (473)
Q Consensus       224 iwd~~~~~~~~~~~~h~~~v----------------~~~~~~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~  277 (473)
                      -.|.++++....+.. ...|                ++.-.--++.++.|+.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999988765421 1111                1100111456666643          688999999999998776


Q ss_pred             e
Q 011978          278 K  278 (473)
Q Consensus       278 ~  278 (473)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.39  E-value=3.3  Score=36.40  Aligned_cols=162  Identities=13%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             ccCCcccEEEEEECCCCCeE-EEEeCCCeEEEEeCCCCceeEEE--cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          104 IAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~l-at~s~d~~i~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      +.|-.+.+..++|+|+...| |+....+.|.-++.. ++.+...  .+ -+-...+++..++.++++--.++.+.+.++.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            44555679999999987655 455567888888865 4444433  33 2447788898888777766668999988874


Q ss_pred             CCccc---------cccC-CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC---CeEEE--Ee------cCc
Q 011978          181 TGKPS---------GNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVI--CL------SGH  239 (473)
Q Consensus       181 ~~~~~---------~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~---~~~~~--~~------~~h  239 (473)
                      .....         ...+ ..++..+.+++|.|.     ..+|+.+-...-.+++.+..   ...+.  ..      ...
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~-----~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK-----TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETT-----TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCC-----CCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            32110         0011 234556788888773     24555555555555655432   11111  00      112


Q ss_pred             cccEEEEEecCCC--eEEEeecCCeEEEEECCCCce
Q 011978          240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKL  273 (473)
Q Consensus       240 ~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~  273 (473)
                      ...+.++++++..  +++.+.....|-.+| .+|+.
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~  204 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRV  204 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE--TT--E
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCE
Confidence            2345566666542  344455556666666 34443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.32  E-value=1.4  Score=44.01  Aligned_cols=104  Identities=15%  Similarity=0.265  Sum_probs=66.3

Q ss_pred             EEECCCCcEEEEEECCCcEEEEeCCCCceEEEee-CCccCEEEEEEe--cCCCEEEEEeCCCcEEEEECCC---------
Q 011978          366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQISWS--ADSRLLLSGSKDSTLKVWDIRT---------  433 (473)
Q Consensus       366 v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~s--p~g~~l~s~s~Dg~i~iwd~~~---------  433 (473)
                      +.-|.-++..+.-+....+.|||.+.+.....-. ...+.|.++.|.  |||+.+.+.+..+.|.+|--..         
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            3334444444444444579999999887543322 346789999996  6899999999999999985321         


Q ss_pred             Cceee--cccccC-CCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          434 QKLKQ--DLPGHA-DEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       434 ~~~~~--~~~~h~-~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      ...+.  .+..|. .+|.+..|.+||..++.+|  +.+.|+
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~  153 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVF  153 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEE
Confidence            11111  233444 4789999999986554443  345554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.23  E-value=0.87  Score=46.66  Aligned_cols=71  Identities=20%  Similarity=0.299  Sum_probs=50.8

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCC----------CCce---EEEe--------eCCccCEEEEEEecC---CCEE
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGT----------TGKF---VAVF--------RGHVGPVYQISWSAD---SRLL  417 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~----------~~~~---~~~~--------~~h~~~v~~v~~sp~---g~~l  417 (473)
                      .|..|.++|+|.+||..|..|.+ |-.+.          .|+.   ...+        ..+...|..+.|+|.   +.+|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            57889999999999998887643 33321          1211   1111        134457999999996   5789


Q ss_pred             EEEeCCCcEEEEECCC
Q 011978          418 LSGSKDSTLKVWDIRT  433 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~~  433 (473)
                      +.-..|+++++||+..
T Consensus       165 ~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEecCCEEEEEecCC
Confidence            9999999999999965

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.11  E-value=0.07  Score=53.64  Aligned_cols=80  Identities=19%  Similarity=0.280  Sum_probs=53.9

Q ss_pred             eEEEECC---CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE-----------EecCCCEEEEEeCCCcEEEE
Q 011978          364 NHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS-----------WSADSRLLLSGSKDSTLKVW  429 (473)
Q Consensus       364 ~~v~~sp---~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~-----------~sp~g~~l~s~s~Dg~i~iw  429 (473)
                      .-|.|+|   +..++..+-.++.+++.+...... ..+++|..++.+++           .||||..+|.++.||.++.|
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            3344444   567888888889988876554322 44566766555443           58999999999999999988


Q ss_pred             ECC-CC----ceeecccccC
Q 011978          430 DIR-TQ----KLKQDLPGHA  444 (473)
Q Consensus       430 d~~-~~----~~~~~~~~h~  444 (473)
                      .+. ++    +++...+.|.
T Consensus       263 Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  263 QIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             eeeeeccccHhhhhccCCCC
Confidence            764 22    3344555565

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.88  E-value=6.1  Score=37.57  Aligned_cols=192  Identities=15%  Similarity=0.167  Sum_probs=117.3

Q ss_pred             eEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee---cCCeEEEEECCCCceeeeeeccCceEEEE
Q 011978          212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS---QDCTIKVWETTQGKLIRELKGHGHWVNSL  287 (473)
Q Consensus       212 ~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~~  287 (473)
                      .++....+..+.+.|..+.+......--. ....+++++++ .++.+.   .++++.+.|..+++.+........+ ..+
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~  165 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGV  165 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceE
Confidence            56666667899999977766655432111 34567788776 455443   3788999998888877764332222 344


Q ss_pred             EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee---ecCccccee
Q 011978          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR---MTGHQQLVN  364 (473)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~v~  364 (473)
                      ++.++..                                   ..+++-..++.+.+.|..........   ...-.....
T Consensus       166 a~~p~g~-----------------------------------~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~  210 (381)
T COG3391         166 AVDPDGN-----------------------------------KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPA  210 (381)
T ss_pred             EECCCCC-----------------------------------eEEEEecCCCeEEEEeCCCcceeccccccccccCCCCc
Confidence            4444321                                   12334456777777774432211000   111123345


Q ss_pred             EEEECCCCcEEEEEECC---CcEEEEeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeec
Q 011978          365 HVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKLKQD  439 (473)
Q Consensus       365 ~v~~sp~g~~lasgs~d---~~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~~~~  439 (473)
                      .++++|+|+++...-..   +.+...|..++..... +..-......+..+|+|..+.+... .+.+.+-|..+.+....
T Consensus       211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            68999999966655443   5899999888876654 2211114566889999999888744 47899999887666554


Q ss_pred             c
Q 011978          440 L  440 (473)
Q Consensus       440 ~  440 (473)
                      .
T Consensus       291 ~  291 (381)
T COG3391         291 G  291 (381)
T ss_pred             e
Confidence            3

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.76  E-value=1.3  Score=42.17  Aligned_cols=75  Identities=20%  Similarity=0.242  Sum_probs=51.7

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEe---------CCCCceEEEee-----------CCccCEEEEEEecCC---CEEE
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWN---------GTTGKFVAVFR-----------GHVGPVYQISWSADS---RLLL  418 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd---------~~~~~~~~~~~-----------~h~~~v~~v~~sp~g---~~l~  418 (473)
                      .|..+..++.|..+|-.+.+|.+.++=         ++.|+...+.+           ...-.+..++|+|+.   .+|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            367788999999999999998655432         22343322111           112246788999975   5788


Q ss_pred             EEeCCCcEEEEECCCCce
Q 011978          419 SGSKDSTLKVWDIRTQKL  436 (473)
Q Consensus       419 s~s~Dg~i~iwd~~~~~~  436 (473)
                      .-+.|++|++||......
T Consensus       185 iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEecCcEEEEEecCCcch
Confidence            888999999999876443

>PHA02713 hypothetical protein; Provisional

Probab=93.74  E-value=8.4  Score=38.74  Aligned_cols=94  Identities=6%  Similarity=0.016  Sum_probs=51.5

Q ss_pred             CCcEEEEEECCC-----------------------cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC----
Q 011978          371 DGQWVASASFDK-----------------------SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD----  423 (473)
Q Consensus       371 ~g~~lasgs~d~-----------------------~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D----  423 (473)
                      +|+..+.|+.++                       .+..||..+.+....-.-.......-...-+|+..+.|+.+    
T Consensus       398 ~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~  477 (557)
T PHA02713        398 DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN  477 (557)
T ss_pred             CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCc
Confidence            677777787652                       47778887765432211111111111123356766667654    


Q ss_pred             --CcEEEEECCC-C--ceeecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          424 --STLKVWDIRT-Q--KLKQDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       424 --g~i~iwd~~~-~--~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                        ..+..||..+ .  .....++........+.+  +|+..+.||.|+
T Consensus       478 ~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~  523 (557)
T PHA02713        478 VKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYES  523 (557)
T ss_pred             cceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecc
Confidence              2467899876 3  334455433333323333  678889999887

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.55  E-value=1.7  Score=41.40  Aligned_cols=146  Identities=16%  Similarity=0.288  Sum_probs=85.5

Q ss_pred             EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      +..|+....++-.|++.|+.+..+..+...+  +.+.|...                             .....++.-+
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~k-----------------------------f~qmt~eqtl  531 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFK-----------------------------FQQMTDEQTL  531 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCcce--eecCCchh-----------------------------HHhcCccceE
Confidence            3356677778888888888888777665432  22222211                             1111233445


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC----CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP----DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp----~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~  409 (473)
                      .|-.+..++-.|++...... ......+.++.-.||.    ...|+|.||..|.|++||.-.-..-..+.+-...|-.+.
T Consensus       532 vGlS~~svFrIDPR~~gNKi-~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id  610 (776)
T COG5167         532 VGLSDYSVFRIDPRARGNKI-KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID  610 (776)
T ss_pred             EeecccceEEecccccCCce-eeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE
Confidence            55556666666765543211 1111112222222332    356899999999999999543333334555567888899


Q ss_pred             EecCCCEEEEEeCCCcEEEEECC
Q 011978          410 WSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      .+.+|.++++.+. ..+.+-|++
T Consensus       611 vta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         611 VTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             eecCCcEEEEeec-ceEEEEecc
Confidence            9999998776654 456676654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.24  E-value=0.44  Score=28.45  Aligned_cols=31  Identities=23%  Similarity=0.350  Sum_probs=25.9

Q ss_pred             cCEEEEEEecCCC---EEEEEeCCCcEEEEECCC
Q 011978          403 GPVYQISWSADSR---LLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       403 ~~v~~v~~sp~g~---~l~s~s~Dg~i~iwd~~~  433 (473)
                      +.|.++.|||+..   +|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998544   888888889999999985

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.01  E-value=0.72  Score=39.74  Aligned_cols=65  Identities=12%  Similarity=0.190  Sum_probs=50.9

Q ss_pred             ECCCCcEEEEEECCCcEEEEeCCCCceEEE-------ee-------CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          368 FSPDGQWVASASFDKSIKLWNGTTGKFVAV-------FR-------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       368 ~sp~g~~lasgs~d~~v~lwd~~~~~~~~~-------~~-------~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      +..++.+|++-..+|.+++||+.+++.+..       +.       .....|..+.++.+|.-+++-+ +|..+.||..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            456788999999999999999998875432       22       2456789999999998888776 57889998754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.98  E-value=0.42  Score=28.52  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=25.4

Q ss_pred             ceeEEEECCCC---cEEEEEECCCcEEEEeCCC
Q 011978          362 LVNHVYFSPDG---QWVASASFDKSIKLWNGTT  391 (473)
Q Consensus       362 ~v~~v~~sp~g---~~lasgs~d~~v~lwd~~~  391 (473)
                      .++++.|||+.   .+|+..-.-+.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57899999854   5888888889999999985

It contains a characteristic DLL sequence motif.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.94  E-value=3.5  Score=38.80  Aligned_cols=102  Identities=10%  Similarity=0.167  Sum_probs=71.3

Q ss_pred             cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce----EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       357 ~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~----~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      ....+.|.++.||+|.+.||.--.|.+|.+++....+.    ..+.+..+..|....|+.+ +-+|-.+..| +.+|.+.
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL  140 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence            34456899999999999999999999999998743222    1223344556899999866 5666666555 6777665


Q ss_pred             CC-ceeecccccCCCEEEEEEeeCCCEEE
Q 011978          433 TQ-KLKQDLPGHADEVFAVDWSPDGEKVA  460 (473)
Q Consensus       433 ~~-~~~~~~~~h~~~i~~l~~s~d~~~l~  460 (473)
                      .. +.+...+.|.-.|+-..|.++.+.+.
T Consensus       141 pekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccccceEe
Confidence            42 23444556777788888888876543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.42  E-value=0.018  Score=53.67  Aligned_cols=144  Identities=19%  Similarity=0.315  Sum_probs=94.5

Q ss_pred             EEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEE-EecCCeEEEeeCCCCccccccCC
Q 011978          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNPLS  190 (473)
Q Consensus       112 ~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s-~~~dg~i~iwd~~~~~~~~~~~~  190 (473)
                      ....|-|.+..++.++.+..+..||-..+.-..  ....+....|+|..+|..++. +-..+.+.+||+.+.........
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le--~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILE--LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcceecc--cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            345677888789988888889999865432111  123445667888888876654 55678999999875432211111


Q ss_pred             C-cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEE
Q 011978          191 G-HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK  264 (473)
Q Consensus       191 ~-~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~  264 (473)
                      + |....  ..|++.     ...++.+...|.+.|++..+.+.+.....|...+++++|..+++.+.++.|..+.
T Consensus       116 g~~s~sl--l~wsKg-----~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~  183 (615)
T KOG2247|consen  116 GTSSKSL--LAWSKG-----TPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS  183 (615)
T ss_pred             CcchHHH--HhhccC-----CccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence            1 11111  344442     2345566678999999988776666665599999999999988877777665443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.22  E-value=2.7  Score=39.06  Aligned_cols=103  Identities=18%  Similarity=0.264  Sum_probs=57.1

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCce---EEEe----eCCccCEEEEEEecC----CCEEEEEeCC-------
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF---VAVF----RGHVGPVYQISWSAD----SRLLLSGSKD-------  423 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~---~~~~----~~h~~~v~~v~~sp~----g~~l~s~s~D-------  423 (473)
                      ..++|+|.|||+++++ ...|.|++++ ..+..   +..+    .........++++|+    +.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999988776 5589999999 44433   2222    223457899999994    4333333321       


Q ss_pred             -CcEEEEECCCC-------c-eeecccc---cCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          424 -STLKVWDIRTQ-------K-LKQDLPG---HADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       424 -g~i~iwd~~~~-------~-~~~~~~~---h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                       ..|.-|.....       + +...++.   ....-..|.|.|||.++++.+..+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence             23444444322       1 1112222   223456799999998777776544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.69  E-value=11  Score=34.96  Aligned_cols=72  Identities=17%  Similarity=0.222  Sum_probs=43.8

Q ss_pred             EeeCCccCEEEEEEec-------CCCEEEEEeCCCcEEEEECCCCce---eec-ccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978          397 VFRGHVGPVYQISWSA-------DSRLLLSGSKDSTLKVWDIRTQKL---KQD-LPGHADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       397 ~~~~h~~~v~~v~~sp-------~g~~l~s~s~Dg~i~iwd~~~~~~---~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                      .+..| ..+..+.|-.       .|.++++.-..+.|....+.....   ... +.....++..+++.|||..+++-+.+
T Consensus       248 ~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~  326 (331)
T PF07995_consen  248 AYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD  326 (331)
T ss_dssp             EETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred             eecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence            34444 4566777753       345566555566777777764321   122 33444489999999999999999888


Q ss_pred             CcEE
Q 011978          466 RVLK  469 (473)
Q Consensus       466 ~~i~  469 (473)
                      |.|.
T Consensus       327 G~iy  330 (331)
T PF07995_consen  327 GKIY  330 (331)
T ss_dssp             TTEE
T ss_pred             CeEe
Confidence            8773

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.49  E-value=1.6  Score=37.72  Aligned_cols=65  Identities=14%  Similarity=0.291  Sum_probs=48.7

Q ss_pred             ECCCCCeEEEEeCCCeEEEEeCCCCceeEEE-------c-------CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          116 FSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-------T-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       116 ~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~-------~-------~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      +..++.+|++-..+|.+++||+.+++.+...       .       .....|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            5567889999999999999999887644321       1       2456788899998888777655 57888888653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.47  E-value=0.072  Score=53.53  Aligned_cols=69  Identities=17%  Similarity=0.178  Sum_probs=48.8

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEE-----------ECCCCCeEEEEecCCeEEEeeC
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA-----------WSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~-----------~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      |.-+-|-++.-++..+-.+++|++-++++... ..+.+|..++..++           .||||+.++.++.||.+++|.+
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            44444555667777777889999887765432 22335776665554           5899999999999999988875


Q ss_pred             C
Q 011978          180 Q  180 (473)
Q Consensus       180 ~  180 (473)
                      .
T Consensus       265 y  265 (1283)
T KOG1916|consen  265 Y  265 (1283)
T ss_pred             e
Confidence            4

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.25  E-value=4.1  Score=41.97  Aligned_cols=68  Identities=21%  Similarity=0.277  Sum_probs=48.9

Q ss_pred             CEEEEEEecCCCEEEEEeCCCcEEEEECCC----------Ccee---ecc--------cccCCCEEEEEEeeC---CCEE
Q 011978          404 PVYQISWSADSRLLLSGSKDSTLKVWDIRT----------QKLK---QDL--------PGHADEVFAVDWSPD---GEKV  459 (473)
Q Consensus       404 ~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~----------~~~~---~~~--------~~h~~~i~~l~~s~d---~~~l  459 (473)
                      .|..|.+||+|++||..|..|.+.+ .+..          ++..   .++        ..+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            5889999999999999988774433 3321          1110   011        123457899999998   4899


Q ss_pred             EEEeCCCcEEecc
Q 011978          460 ASGGKDRVLKLWM  472 (473)
Q Consensus       460 ~s~~~D~~i~~w~  472 (473)
                      +.-..|+++|+|+
T Consensus       165 ~vLtsdn~lR~y~  177 (717)
T PF10168_consen  165 VVLTSDNTLRLYD  177 (717)
T ss_pred             EEEecCCEEEEEe
Confidence            9999999999986

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.20  E-value=1.6  Score=41.54  Aligned_cols=53  Identities=21%  Similarity=0.428  Sum_probs=44.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       414 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      ..++|.||..|.|++||--..+...-+++-...|-.++.+.+|+++.+.+...
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~y  625 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNY  625 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecce
Confidence            34899999999999999876666677888888999999999999988766543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.95  E-value=9  Score=36.23  Aligned_cols=151  Identities=13%  Similarity=0.179  Sum_probs=79.9

Q ss_pred             EEEECCCCCeEEEEeCCCeEEEEeCCC---CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc---
Q 011978          113 SVAFSPDGRQLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG---  186 (473)
Q Consensus       113 ~~~~sp~~~~lat~s~d~~i~iwd~~~---~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~---  186 (473)
                      .+-|.-..+.|++ -..|.+.=|-++.   .-+.......+++|.++.||+|.+.||.-..+++|.+++....+...   
T Consensus        27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence            3445443443332 2334444454432   22333334456799999999999999999999999999874433221   


Q ss_pred             ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-CeEEEEecCccccEEEEEecCCCe--EEEee-cCCe
Q 011978          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV--IYTGS-QDCT  262 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~-~d~~  262 (473)
                      ......+..|.+..|...      ..++..+..| +.+|.... .+.+...+.|...|.--.|.++-.  +++.+ ..++
T Consensus       106 ~~ck~k~~~IlGF~W~~s------~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~  178 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSS------TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENV  178 (657)
T ss_pred             HHhccCcceeEEEEEecC------eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccc
Confidence            112223345777777642      2233333222 33443221 122233345677777777777652  23333 4455


Q ss_pred             EEEEECCCC
Q 011978          263 IKVWETTQG  271 (473)
Q Consensus       263 i~~wd~~~~  271 (473)
                      +.=+.++++
T Consensus       179 lnpf~~~~~  187 (657)
T KOG2377|consen  179 LNPFHFRAG  187 (657)
T ss_pred             cccEEEeec
Confidence            554554444

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.73  E-value=3.2  Score=39.23  Aligned_cols=100  Identities=19%  Similarity=0.259  Sum_probs=58.3

Q ss_pred             ceeEEEECCCCcEEEEEE-----------CCC-cEEEEeCCC--Cc--eEEEeeCCccCEEEEEEecCCCEEEEEeCCCc
Q 011978          362 LVNHVYFSPDGQWVASAS-----------FDK-SIKLWNGTT--GK--FVAVFRGHVGPVYQISWSADSRLLLSGSKDST  425 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs-----------~d~-~v~lwd~~~--~~--~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~  425 (473)
                      ....|+|.++|+++++-.           ..+ .|.+++-..  |+  ....+.........+++.++| +++ ++.+..
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            356789999999877653           223 677776543  33  233444344456889999998 444 444433


Q ss_pred             EEEEECCC-------Cc-eeecccc----cCCCEEEEEEeeCCCEEEEEe
Q 011978          426 LKVWDIRT-------QK-LKQDLPG----HADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       426 i~iwd~~~-------~~-~~~~~~~----h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      .++.|...       .+ +...+..    +......+.|.|||+..++.+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            33435432       11 1222322    123477899999998777666

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.40  E-value=7.6  Score=34.51  Aligned_cols=112  Identities=10%  Similarity=0.214  Sum_probs=78.4

Q ss_pred             ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC-ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--
Q 011978          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH-VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL--  436 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~--  436 (473)
                      ...+.++.|+|+.+.|.+......--|+=...|+.+.++.-. -.-.-.+.|.-+|++.++--.++.++++.+.....  
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            345899999999999988887777777766778888775421 11234577888888888877888998887765421  


Q ss_pred             -----eecc---cccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          437 -----KQDL---PGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       437 -----~~~~---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                           ...+   ...+..--.++|+|..+.|..+-+-+-++||
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~  207 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIF  207 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEE
Confidence                 1111   1113445689999999998888776666655

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.35  E-value=10  Score=37.12  Aligned_cols=117  Identities=13%  Similarity=0.279  Sum_probs=73.5

Q ss_pred             eecCcccceeEEEECCC----CcEEEEEECCCcEEEEeCC-----CCceEEEeeCCc---cC--EEEEEEecCCCEEEEE
Q 011978          355 RMTGHQQLVNHVYFSPD----GQWVASASFDKSIKLWNGT-----TGKFVAVFRGHV---GP--VYQISWSADSRLLLSG  420 (473)
Q Consensus       355 ~~~~~~~~v~~v~~sp~----g~~lasgs~d~~v~lwd~~-----~~~~~~~~~~h~---~~--v~~v~~sp~g~~l~s~  420 (473)
                      +..|....|..++|.|-    -..|.+....+.|.+|.+.     +.+.+.....+.   -+  -..+.|+|....|+.-
T Consensus        51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL  130 (671)
T PF15390_consen   51 KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL  130 (671)
T ss_pred             cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE
Confidence            34455567899999984    3244444566789999864     233332211111   11  1356799998888877


Q ss_pred             eCCCcEEEEECCC--CceeecccccCCCEEEEEEeeCCCEEEEEeCC-CcEEecc
Q 011978          421 SKDSTLKVWDIRT--QKLKQDLPGHADEVFAVDWSPDGEKVASGGKD-RVLKLWM  472 (473)
Q Consensus       421 s~Dg~i~iwd~~~--~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~~w~  472 (473)
                      .....-.+++++.  .+....+.+ .+.|.+.+|.+||+.|+.+-.. =.-++|+
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi~~-~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADIKT-SGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEeccC-CceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence            6655556667653  445556654 5679999999999998766443 2345664

>PRK13684 Ycf48-like protein; Provisional

Probab=89.76  E-value=17  Score=33.81  Aligned_cols=150  Identities=13%  Similarity=0.150  Sum_probs=78.9

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEE-EEeCCCCceeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVR-LWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~-iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  185 (473)
                      ...+.++.+.|++.+++++.. |.+. .+|-. ++.-.. ...-...+.++.+.++++.++.+ ..|.+++=..+.|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCC-ceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            457889999999887766543 4443 33221 111111 12334578899999998866654 5577654333344321


Q ss_pred             cccCC---CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec---CccccEEEEEecCCCeEEEeec
Q 011978          186 GNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQ  259 (473)
Q Consensus       186 ~~~~~---~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~s~~~  259 (473)
                      .....   .....+.++.+.|     . ..+..++.+|.+.. ....++.-....   +-......+.+..++..+..+.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~-----~-~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRT-----P-GEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             ccccCCccccccceeeEEEcC-----C-CCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence            11111   1122355666554     2 23555666665543 333333222221   2223456666666666677777


Q ss_pred             CCeEEEEE
Q 011978          260 DCTIKVWE  267 (473)
Q Consensus       260 d~~i~~wd  267 (473)
                      .|.|--|+
T Consensus       322 ~G~il~~~  329 (334)
T PRK13684        322 RGVLLRYV  329 (334)
T ss_pred             CceEEEec
Confidence            88876664

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.70  E-value=3.8  Score=41.57  Aligned_cols=102  Identities=13%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             CceEEEecCCceEEEEeCCC-------C----C--------CCeeeecCcccceeEEEEC--CCCcEEEEEECCCcEEEE
Q 011978          329 PERLVSGSDDFTMFLWEPAV-------S----K--------QPKTRMTGHQQLVNHVYFS--PDGQWVASASFDKSIKLW  387 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~-------~----~--------~~~~~~~~~~~~v~~v~~s--p~g~~lasgs~d~~v~lw  387 (473)
                      .+.|+.+.+||.+.+|....       .    .        .|...+ .-....++++++  ...++||.++....|.||
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            45788999999999996410       0    0        111111 123468899999  888999999988888888


Q ss_pred             eCCCC--ceEEE-eeCCccCEEEEEEecCC-----C-EEEEEeCCCcEEEEEC
Q 011978          388 NGTTG--KFVAV-FRGHVGPVYQISWSADS-----R-LLLSGSKDSTLKVWDI  431 (473)
Q Consensus       388 d~~~~--~~~~~-~~~h~~~v~~v~~sp~g-----~-~l~s~s~Dg~i~iwd~  431 (473)
                      -....  +.... -..|..-|.+|+|-++.     . .|++++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            54331  11110 01245568899997643     2 7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK10115 protease 2; Provisional

Probab=89.35  E-value=29  Score=35.97  Aligned_cols=72  Identities=15%  Similarity=0.110  Sum_probs=48.4

Q ss_pred             ccEEEEEECCCCCeEEEEeC-----CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC------CeEEEe
Q 011978          109 EAVLSVAFSPDGRQLASGSG-----DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA------GELQCW  177 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d------g~i~iw  177 (473)
                      -.+..+.++|||++||.+..     ...|++-|+.++..+.......  -..++|++|++.|+....+      ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            34667889999999886532     2368889998776332211111  1469999999877765442      367888


Q ss_pred             eCCCC
Q 011978          178 DPQTG  182 (473)
Q Consensus       178 d~~~~  182 (473)
                      ++.++
T Consensus       205 ~lgt~  209 (686)
T PRK10115        205 TIGTP  209 (686)
T ss_pred             ECCCC
Confidence            88877

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.33  E-value=19  Score=34.86  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=60.8

Q ss_pred             cceeEEEECCCCcEEEEEECCCcEEEEeCCCCce--EEEe----e-CCccCEEEEEEecCC------CEEEEEe------
Q 011978          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVF----R-GHVGPVYQISWSADS------RLLLSGS------  421 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~--~~~~----~-~h~~~v~~v~~sp~g------~~l~s~s------  421 (473)
                      ...+.|+|.|||++|++--..|.|++++..++..  +..+    . ...+....|+++|+-      .+|....      
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            3467899999999888876579999998655432  2111    1 135678999999873      2333331      


Q ss_pred             ----CCCcEEEEECCCC-------c-eeeccc---ccCCCEEEEEEeeCCCEEEEEeCC
Q 011978          422 ----KDSTLKVWDIRTQ-------K-LKQDLP---GHADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       422 ----~Dg~i~iwd~~~~-------~-~~~~~~---~h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                          ....|.-|.+...       + ++..++   .|..  -.|.|.|||+++++.+..
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEECCC
Confidence                1223444544311       1 112221   2433  467899999877766554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.03  E-value=3.7  Score=41.14  Aligned_cols=68  Identities=26%  Similarity=0.468  Sum_probs=48.3

Q ss_pred             CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--cccccCCCEEEEEEe--eCCCEEEEEeCCCcEEecc
Q 011978          404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWS--PDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       404 ~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~--~~~~h~~~i~~l~~s--~d~~~l~s~~~D~~i~~w~  472 (473)
                      ...-+.-|.-++..++-+....+.|||.+.+....  .+ ...+.|.+++|.  |||+.+.+.|-.+.|.++.
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            44445555555554444445579999999876543  33 346789999985  8899999999999988863

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=89.03  E-value=27  Score=35.05  Aligned_cols=93  Identities=11%  Similarity=0.052  Sum_probs=45.8

Q ss_pred             CCcEEEEEECC------CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC--------cEEEEECCCCce
Q 011978          371 DGQWVASASFD------KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS--------TLKVWDIRTQKL  436 (473)
Q Consensus       371 ~g~~lasgs~d------~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg--------~i~iwd~~~~~~  436 (473)
                      +++..+.|+.+      +.+..||..+.+....-......-...+...+++..+.|+.++        .+.+||..+.+-
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence            56777777732      3588899877654322110000001112233566666666432        388899876542


Q ss_pred             --eecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978          437 --KQDLPGHADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       437 --~~~~~~h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                        ...+.........+  .-+++.++.||.+
T Consensus       469 ~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~  497 (534)
T PHA03098        469 TELSSLNFPRINASLC--IFNNKIYVVGGDK  497 (534)
T ss_pred             eeCCCCCcccccceEE--EECCEEEEEcCCc
Confidence              22222111111122  2367777777765

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.88  E-value=33  Score=35.92  Aligned_cols=113  Identities=17%  Similarity=0.167  Sum_probs=68.1

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC--------EEEEEEC----------------CCCCeEEEEecCCeEE
Q 011978          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW--------VLCIAWS----------------ADGKHLVSGSKAGELQ  175 (473)
Q Consensus       120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~l~~s----------------~dg~~l~s~~~dg~i~  175 (473)
                      +..|+.++.++.|.-.|..+++.+.++......        ...+++-                ..+..|+.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556777788888888898888877665422110        1112221                1345788899999999


Q ss_pred             EeeCCCCccccccCCCcCCcEE-------------EEEeceeccCCCCceEEEeeC----------CCcEEEEECCCCeE
Q 011978          176 CWDPQTGKPSGNPLSGHKKWIT-------------GISWEPVHLNAPCRRFVSASK----------DGDARIWDVSLRKC  232 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~-------------~i~~~~~~~~~~~~~~~s~s~----------dg~i~iwd~~~~~~  232 (473)
                      -.|.++|+.....  +....+.             .+.-.|.-   ....++.|+.          +|.|+-+|..+++.
T Consensus       274 ALDA~TGk~~W~f--g~~G~vdl~~~~g~~~~g~~~~ts~P~V---~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       274 ALDADTGKLCEDF--GNNGTVDLTAGMGTTPPGYYYPTSPPLV---AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             EEECCCCCEEEEe--cCCCceeeecccCcCCCcccccccCCEE---ECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence            9999999865321  1111110             01111211   1235555543          68899999999998


Q ss_pred             EEEec
Q 011978          233 VICLS  237 (473)
Q Consensus       233 ~~~~~  237 (473)
                      +..+.
T Consensus       349 ~W~~~  353 (764)
T TIGR03074       349 VWAWD  353 (764)
T ss_pred             eeEEe
Confidence            87653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=88.78  E-value=16  Score=32.24  Aligned_cols=179  Identities=12%  Similarity=0.148  Sum_probs=96.3

Q ss_pred             EEEEEecCCCeEE-EeecCC--eEEEEECCCCceeeeeeccCce-EEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          243 VTCVKWGGDGVIY-TGSQDC--TIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       243 v~~~~~~~~~~l~-s~~~d~--~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      ...+.|..++.|+ +.+.-|  .|+.+|+.+|+......-.... -..+++..                           
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~---------------------------   99 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG---------------------------   99 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET---------------------------
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC---------------------------
Confidence            3456775566544 556555  7888999999876554322110 01111111                           


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~  398 (473)
                                .....-.-.++..++||...-+........  ..=+.++  .||+.|+.......++++|..+.+....+
T Consensus       100 ----------d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen  100 ----------DKLYQLTWKEGTGFVYDPNTLKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI  165 (264)
T ss_dssp             ----------TEEEEEESSSSEEEEEETTTTEEEEEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred             ----------CEEEEEEecCCeEEEEccccceEEEEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence                      112333445778888987543322221111  2334455  45666666655668999999888776655


Q ss_pred             eCC-----ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc------------cc---CCCEEEEEEeeCCCE
Q 011978          399 RGH-----VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP------------GH---ADEVFAVDWSPDGEK  458 (473)
Q Consensus       399 ~~h-----~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------~h---~~~i~~l~~s~d~~~  458 (473)
                      +..     -..++.+.|- +|...|=.=....|...|..+|+....+.            .+   .+-.+.++|.|..+.
T Consensus       166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~  244 (264)
T PF05096_consen  166 QVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR  244 (264)
T ss_dssp             E-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred             EEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence            432     2346777775 66666555555667777888887654221            01   245789999988776


Q ss_pred             EEEEe
Q 011978          459 VASGG  463 (473)
Q Consensus       459 l~s~~  463 (473)
                      |...|
T Consensus       245 l~vTG  249 (264)
T PF05096_consen  245 LFVTG  249 (264)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            65444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.51  E-value=11  Score=38.54  Aligned_cols=117  Identities=13%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             cEEEEEECC--CCCeEEEEeCCCeEEEEeCCC-------C-------------ceeEEEcCCCCCEEEEEEC--CCCCeE
Q 011978          110 AVLSVAFSP--DGRQLASGSGDTTVRLWDLNT-------Q-------------TPMFKCTGHKNWVLCIAWS--ADGKHL  165 (473)
Q Consensus       110 ~V~~~~~sp--~~~~lat~s~d~~i~iwd~~~-------~-------------~~~~~~~~~~~~v~~l~~s--~dg~~l  165 (473)
                      .|+-+....  ....|+.|.+||.|.+|.+++       .             +|.+.+. -...++.+++.  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            466665443  345788999999999997521       0             1222222 23468889988  777888


Q ss_pred             EEEecCCeEEEeeCCC--CccccccCCCcCCcEEEEEeceeccCCCCc-eEEEeeCCCcEEEEEC
Q 011978          166 VSGSKAGELQCWDPQT--GKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDV  227 (473)
Q Consensus       166 ~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~-~~~s~s~dg~i~iwd~  227 (473)
                      |+++....|.+|-...  .+.....-..|...|.+|+|.+......+. .++.++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888887775433  221111112355678999998876554443 6777888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=88.33  E-value=22  Score=33.31  Aligned_cols=249  Identities=14%  Similarity=0.148  Sum_probs=93.1

Q ss_pred             EEeceeccCCCCceEEEeeC-C--CcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCcee
Q 011978          199 ISWEPVHLNAPCRRFVSASK-D--GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI  274 (473)
Q Consensus       199 i~~~~~~~~~~~~~~~s~s~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~  274 (473)
                      +-|....+..++++|+-++. |  ..+.+.|+.+++..+...+.........+++++ .++-......++-.|+.+.+..
T Consensus        36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~  115 (386)
T PF14583_consen   36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER  115 (386)
T ss_dssp             --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred             eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence            44444455566777766554 4  456677888887665443321111112223333 3333334467777788887654


Q ss_pred             eeeeccCceEEEEEe--cccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC
Q 011978          275 RELKGHGHWVNSLAL--STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP  352 (473)
Q Consensus       275 ~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  352 (473)
                      ........++....+  ..+.....+... ....+..... .....+.+..   ..         ...|..-|+..+.  
T Consensus       116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~-~~~d~~~l~~-~~~f~e~~~a---~p---------~~~i~~idl~tG~--  179 (386)
T PF14583_consen  116 VVYEVPDDWKGYGTWVANSDCTKLVGIEI-SREDWKPLTK-WKGFREFYEA---RP---------HCRIFTIDLKTGE--  179 (386)
T ss_dssp             EEEE--TTEEEEEEEEE-TTSSEEEEEEE-EGGG-----S-HHHHHHHHHC---------------EEEEEEETTT----
T ss_pred             EEEECCcccccccceeeCCCccEEEEEEE-eehhccCccc-cHHHHHHHhh---CC---------CceEEEEECCCCc--
Confidence            444445555533222  222222222110 0000100000 0000111111   11         1122223333221  


Q ss_pred             eeeecCcccceeEEEECCC-CcEEEEEEC---CC-cEEEEeCC-CCceEEEeeCCc--cCEEEEEEecCCCEEEEEe---
Q 011978          353 KTRMTGHQQLVNHVYFSPD-GQWVASASF---DK-SIKLWNGT-TGKFVAVFRGHV--GPVYQISWSADSRLLLSGS---  421 (473)
Q Consensus       353 ~~~~~~~~~~v~~v~~sp~-g~~lasgs~---d~-~v~lwd~~-~~~~~~~~~~h~--~~v~~v~~sp~g~~l~s~s---  421 (473)
                      ...+..-..++.-+.|||. ..+|+-|-.   |. .-|+|-++ .|.....+..|.  ..+.-=-|.|||..|.--+   
T Consensus       180 ~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~  259 (386)
T PF14583_consen  180 RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP  259 (386)
T ss_dssp             EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEET
T ss_pred             eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecC
Confidence            2222223456778899994 555665543   22 13566433 233333333232  2233445789998655322   


Q ss_pred             --CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978          422 --KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       422 --~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                        .+..|.-+|..+++......  ...-..+--++||+++|-=|.|
T Consensus       260 ~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  260 GGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             TT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence              24456667777765432211  1223455668999887765555

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=87.58  E-value=41  Score=35.43  Aligned_cols=121  Identities=12%  Similarity=0.082  Sum_probs=67.6

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCC-CCceEEEeeCCCcEEEEECCCC
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA-PCRRFVSASKDGDARIWDVSLR  230 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~~~~~~s~s~dg~i~iwd~~~~  230 (473)
                      .++....+.+..+++.++.++.+...++..+.........-...|.|+.++|..-.+ ....++.|.++..+.+--....
T Consensus       489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd  568 (1096)
T KOG1897|consen  489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD  568 (1096)
T ss_pred             ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence            344444455666788888778887777766542222222334568888888864332 2346677777766555432222


Q ss_pred             eEEEE---ecCc--cccEEEEEecC-CCeEEEeecCCeEEEE--ECCCCc
Q 011978          231 KCVIC---LSGH--TLAVTCVKWGG-DGVIYTGSQDCTIKVW--ETTQGK  272 (473)
Q Consensus       231 ~~~~~---~~~h--~~~v~~~~~~~-~~~l~s~~~d~~i~~w--d~~~~~  272 (473)
                      -++.+   +.+.  ...|.-.++-. .++|+++..||.+.-|  |..+|+
T Consensus       569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~  618 (1096)
T KOG1897|consen  569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ  618 (1096)
T ss_pred             cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccce
Confidence            22211   1111  12344444555 4478899999998755  444443

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.38  E-value=22  Score=38.49  Aligned_cols=34  Identities=3%  Similarity=0.035  Sum_probs=28.5

Q ss_pred             CcccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978          358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (473)
Q Consensus       358 ~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~  391 (473)
                      .+.+.|..+++......+.+-+..++|++||+..
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            4556788888888888899999999999999875

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=87.15  E-value=50  Score=36.05  Aligned_cols=26  Identities=19%  Similarity=0.438  Sum_probs=17.4

Q ss_pred             cCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978          443 HADEVFAVDWSPDGEKVASGGKDRVL  468 (473)
Q Consensus       443 h~~~i~~l~~s~d~~~l~s~~~D~~i  468 (473)
                      |-..+.+|+.+|||...+.-..+.+|
T Consensus       660 ~lnsp~alaVsPdg~v~IAD~gN~rI  685 (1899)
T KOG4659|consen  660 KLNSPYALAVSPDGDVIIADSGNSRI  685 (1899)
T ss_pred             ccCCcceEEECCCCcEEEecCCchhh
Confidence            44467788888888876665555444

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.15  E-value=1.8  Score=25.17  Aligned_cols=28  Identities=18%  Similarity=0.455  Sum_probs=19.5

Q ss_pred             CCCEEEEEEeeCCCEEEEEe-CC--CcEEec
Q 011978          444 ADEVFAVDWSPDGEKVASGG-KD--RVLKLW  471 (473)
Q Consensus       444 ~~~i~~l~~s~d~~~l~s~~-~D--~~i~~w  471 (473)
                      ........|||||++|+-++ .+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34567889999999987655 44  666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.60  E-value=8.9  Score=36.35  Aligned_cols=102  Identities=20%  Similarity=0.281  Sum_probs=48.2

Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCccc-ceeEEEECC--CCcEEEEE-ECCCcEEEE-eCCCCce----EEEeeC--
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ-LVNHVYFSP--DGQWVASA-SFDKSIKLW-NGTTGKF----VAVFRG--  400 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~v~~sp--~g~~lasg-s~d~~v~lw-d~~~~~~----~~~~~~--  400 (473)
                      +..+....++.+||....+..+..-.+... .+..|.|..  +..+=.+| -...+|..| ....++.    +..+..  
T Consensus       215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~  294 (461)
T PF05694_consen  215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK  294 (461)
T ss_dssp             HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred             hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence            344455678999998765544444344322 355666654  44433333 234445444 3244432    111111  


Q ss_pred             ---C------------ccCEEEEEEecCCCEEEEEe-CCCcEEEEECCC
Q 011978          401 ---H------------VGPVYQISWSADSRLLLSGS-KDSTLKVWDIRT  433 (473)
Q Consensus       401 ---h------------~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~  433 (473)
                         -            .+-|+++..|.|.++|.... .+|.|+.||+..
T Consensus       295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence               0            24579999999999988776 489999999975

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.52  E-value=1.7  Score=45.55  Aligned_cols=108  Identities=13%  Similarity=0.088  Sum_probs=67.8

Q ss_pred             eeEEEECCCCcEEEEE--ECCCcEEEEeCCCCceE-----EEeeC------CccCEEEEEEecCCC-EEEEEeCCCcEEE
Q 011978          363 VNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFV-----AVFRG------HVGPVYQISWSADSR-LLLSGSKDSTLKV  428 (473)
Q Consensus       363 v~~v~~sp~g~~lasg--s~d~~v~lwd~~~~~~~-----~~~~~------h~~~v~~v~~sp~g~-~l~s~s~Dg~i~i  428 (473)
                      +..+...+|+...++.  +.+-.|..||+++-...     .-+..      ......++.|+|.=. ..+....|+.|++
T Consensus       103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV  182 (1405)
T ss_pred             ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence            3445556676655444  33447889998754321     11111      223567888988532 3455667888888


Q ss_pred             EECCCCce-eecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          429 WDIRTQKL-KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       429 wd~~~~~~-~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      ..+..... ...++ -....++++|+|.|+.++.|-..|++.-|
T Consensus       183 ~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy  225 (1405)
T KOG3630|consen  183 KSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQY  225 (1405)
T ss_pred             hhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEe
Confidence            87654322 22332 23568999999999999999999987644

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=86.40  E-value=6.3  Score=37.56  Aligned_cols=82  Identities=17%  Similarity=0.216  Sum_probs=54.4

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC----EEEEEECCC--------------CCe
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----VLCIAWSAD--------------GKH  164 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~----v~~l~~s~d--------------g~~  164 (473)
                      .+......+.++..+|++++.|+...=|.|.++|+.++..+...+|..+.    +....-...              ..+
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            34455567889999999998888767799999999888766666554432    111110000              112


Q ss_pred             -EEEEecCCeEEEeeCCCCcc
Q 011978          165 -LVSGSKAGELQCWDPQTGKP  184 (473)
Q Consensus       165 -l~s~~~dg~i~iwd~~~~~~  184 (473)
                       ++-+..-|.|.+|.+++|..
T Consensus       382 LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCE
Confidence             23466789999999988764

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.99  E-value=4  Score=23.66  Aligned_cols=29  Identities=28%  Similarity=0.337  Sum_probs=19.2

Q ss_pred             CCCCEEEEEECCCCCeEEEEec-C--CeEEEe
Q 011978          149 HKNWVLCIAWSADGKHLVSGSK-A--GELQCW  177 (473)
Q Consensus       149 ~~~~v~~l~~s~dg~~l~s~~~-d--g~i~iw  177 (473)
                      ....-....|||||+.|+-++. +  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3455678899999999886654 3  455554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.70  E-value=4.2  Score=42.82  Aligned_cols=97  Identities=18%  Similarity=0.217  Sum_probs=64.2

Q ss_pred             eeEEEECCCC-cEEEEEECCCcEEEEeCCCCce-EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc
Q 011978          363 VNHVYFSPDG-QWVASASFDKSIKLWNGTTGKF-VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL  440 (473)
Q Consensus       363 v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~  440 (473)
                      ..++.|.|.- ...|....|+.|++..+..... +..+. -....++++|+|.|+.++.|-..|++.-|...- +....+
T Consensus       158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~i  235 (1405)
T KOG3630|consen  158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEI  235 (1405)
T ss_pred             cccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecc
Confidence            4566777743 2355566788888876543222 12222 345689999999999999999999999886543 222222


Q ss_pred             c---cc-CCCEEEEEEeeCCCEEEE
Q 011978          441 P---GH-ADEVFAVDWSPDGEKVAS  461 (473)
Q Consensus       441 ~---~h-~~~i~~l~~s~d~~~l~s  461 (473)
                      +   .. ..+|.+|+|-....++++
T Consensus       236 p~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  236 PEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             cCCCcCCCcceeEEEEecceeEEEE
Confidence            2   11 357999999887777765

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=85.33  E-value=23  Score=30.47  Aligned_cols=46  Identities=11%  Similarity=0.159  Sum_probs=40.1

Q ss_pred             EEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe
Q 011978          366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS  411 (473)
Q Consensus       366 v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s  411 (473)
                      +++..+|.+.++.-..++|...|..+|+.+..++-....|++++|-
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            4556688888888888999999999999999998888899999995

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.93  E-value=6.8  Score=32.34  Aligned_cols=27  Identities=30%  Similarity=0.468  Sum_probs=23.2

Q ss_pred             CEEEEEEeeCC------CEEEEEeCCCcEEecc
Q 011978          446 EVFAVDWSPDG------EKVASGGKDRVLKLWM  472 (473)
Q Consensus       446 ~i~~l~~s~d~------~~l~s~~~D~~i~~w~  472 (473)
                      .+.+++|||-|      -.||..+.++.|.||.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~  119 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG  119 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence            68899999954      4789999999999985

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.74  E-value=3.9  Score=41.12  Aligned_cols=36  Identities=25%  Similarity=0.466  Sum_probs=27.0

Q ss_pred             cCEEEEEEec----CCCEEEEEeCCCcEEEEECCCCceee
Q 011978          403 GPVYQISWSA----DSRLLLSGSKDSTLKVWDIRTQKLKQ  438 (473)
Q Consensus       403 ~~v~~v~~sp----~g~~l~s~s~Dg~i~iwd~~~~~~~~  438 (473)
                      +.+..++.++    +..+|++.+.|+++|+||+.+++.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence            3456666666    67899999999999999999988743

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.67  E-value=3.8  Score=24.09  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=22.6

Q ss_pred             cCCCEEEEEe-CCCcEEEEECCCCceeecccc
Q 011978          412 ADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPG  442 (473)
Q Consensus       412 p~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~  442 (473)
                      |++++|+++. .+++|.++|..+++....+.-
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5777666654 578999999988877665543

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=84.32  E-value=26  Score=30.19  Aligned_cols=92  Identities=12%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             eeEEEECCCCcEEE-EEECCCcEEEEe--CCCCce-----EEEeeCC----ccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978          363 VNHVYFSPDGQWVA-SASFDKSIKLWN--GTTGKF-----VAVFRGH----VGPVYQISWSADSRLLLSGSKDSTLKVWD  430 (473)
Q Consensus       363 v~~v~~sp~g~~la-sgs~d~~v~lwd--~~~~~~-----~~~~~~h----~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd  430 (473)
                      -+.++|+.+.+.+. +-+.+-+|.-||  ..+|..     +..++..    ...--.++...+|++.++.-..++|...|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            35678887776554 445667787787  555542     2233221    11112344455777777777788999999


Q ss_pred             CCCCceeecccccCCCEEEEEEee
Q 011978          431 IRTQKLKQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       431 ~~~~~~~~~~~~h~~~i~~l~~s~  454 (473)
                      ..+++.+.++.-....|++++|--
T Consensus       240 p~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecC
Confidence            999999888777788999999963

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=83.46  E-value=28  Score=35.17  Aligned_cols=133  Identities=15%  Similarity=0.160  Sum_probs=68.3

Q ss_pred             eEEEecCCc------eEEEEeCCCCCCC-eeeecCcccceeEEEECCCCcEEEEEECC------CcEEEEeCCCCceEEE
Q 011978          331 RLVSGSDDF------TMFLWEPAVSKQP-KTRMTGHQQLVNHVYFSPDGQWVASASFD------KSIKLWNGTTGKFVAV  397 (473)
Q Consensus       331 ~l~~~~~d~------~i~iwd~~~~~~~-~~~~~~~~~~v~~v~~sp~g~~lasgs~d------~~v~lwd~~~~~~~~~  397 (473)
                      .++.|+.++      .+..+|+...... ...+. ....-.++++. ++...++|+.|      .++..||..+.+....
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            455666553      4667776543211 11122 11122233333 56788888888      3577888887764432


Q ss_pred             eeCCccCEEEEEE-ecCCCEEEEEeCCCc-----EEEEECCCCce--eecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978          398 FRGHVGPVYQISW-SADSRLLLSGSKDST-----LKVWDIRTQKL--KQDLPGHADEVFAVDWSPDGEKVASGGKDRVL  468 (473)
Q Consensus       398 ~~~h~~~v~~v~~-sp~g~~l~s~s~Dg~-----i~iwd~~~~~~--~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i  468 (473)
                      -.-... -..+.. .-+|...|+|+.||.     |-.||..+.+-  ...+.......-.  -.-+|+..+.||.|+.-
T Consensus       365 a~M~~~-R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv--~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  365 APMNTK-RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGV--AVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             CCccCc-cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEE--EEECCEEEEEcCcCCCc
Confidence            111111 111111 236788888998874     77788776432  2222211111112  23467888888877643

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.43  E-value=6.9  Score=22.90  Aligned_cols=31  Identities=19%  Similarity=0.287  Sum_probs=22.8

Q ss_pred             CCCcEEEEEE-CCCcEEEEeCCCCceEEEeeC
Q 011978          370 PDGQWVASAS-FDKSIKLWNGTTGKFVAVFRG  400 (473)
Q Consensus       370 p~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~  400 (473)
                      |++++|.++. .+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5667666554 578999999988887777654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.93  E-value=15  Score=33.02  Aligned_cols=71  Identities=23%  Similarity=0.463  Sum_probs=48.9

Q ss_pred             CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe------CCCcEEEEECCCCceeecccc-----cCCCEEE
Q 011978          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS------KDSTLKVWDIRTQKLKQDLPG-----HADEVFA  449 (473)
Q Consensus       381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s------~Dg~i~iwd~~~~~~~~~~~~-----h~~~i~~  449 (473)
                      ...|.+||..+.+....-.+-.+.|+++.|..+.++++.|.      ....+-.||.....-. .+.+     -.++|..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence            34699999888776665556678999999997777777765      3456888998775432 2222     1256777


Q ss_pred             EEE
Q 011978          450 VDW  452 (473)
Q Consensus       450 l~~  452 (473)
                      +.+
T Consensus        94 ~~~   96 (281)
T PF12768_consen   94 LTF   96 (281)
T ss_pred             EEe
Confidence            765

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=82.83  E-value=0.12  Score=48.41  Aligned_cols=131  Identities=14%  Similarity=0.168  Sum_probs=84.7

Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE-EECCCcEEEEeCCCCceEE-EeeC-CccCEEEE
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVA-VFRG-HVGPVYQI  408 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las-gs~d~~v~lwd~~~~~~~~-~~~~-h~~~v~~v  408 (473)
                      ++.++.+..+..||-.......   ...+.....++|..++..++. +-..+.+.+||+.+..... .+.+ |....  +
T Consensus        49 lavaca~tiv~~YD~agq~~le---~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l  123 (615)
T KOG2247|consen   49 LAVACANTIVIYYDKAGQVILE---LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--L  123 (615)
T ss_pred             eehhhhhhHHHhhhhhcceecc---cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--H
Confidence            6666667777777743221111   112233445677777765543 4456789999987542111 1111 22222  7


Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978          409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL  468 (473)
Q Consensus       409 ~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i  468 (473)
                      .|++.+..++.+-..|.+.|++..+.+.....-.|..++++++|.+.+ +.+.++.|..+
T Consensus       124 ~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L  182 (615)
T KOG2247|consen  124 AWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTL  182 (615)
T ss_pred             hhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHH
Confidence            899988899999889999999998877665554499999999999975 56777766543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.72  E-value=8.2  Score=38.82  Aligned_cols=37  Identities=22%  Similarity=0.466  Sum_probs=29.0

Q ss_pred             ceeEEEECC----CCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978          362 LVNHVYFSP----DGQWVASASFDKSIKLWNGTTGKFVAVF  398 (473)
Q Consensus       362 ~v~~v~~sp----~g~~lasgs~d~~v~lwd~~~~~~~~~~  398 (473)
                      ....+++++    +..+|++-+.|+.+|+||+.+++++...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            455667776    7789999999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=82.49  E-value=24  Score=32.71  Aligned_cols=97  Identities=20%  Similarity=0.299  Sum_probs=58.7

Q ss_pred             eeEEEECCCCcEEEEEECC------CcEEEEeCCCCceEEEee---------------CCccCEEEEEEecCCCEEEEEe
Q 011978          363 VNHVYFSPDGQWVASASFD------KSIKLWNGTTGKFVAVFR---------------GHVGPVYQISWSADSRLLLSGS  421 (473)
Q Consensus       363 v~~v~~sp~g~~lasgs~d------~~v~lwd~~~~~~~~~~~---------------~h~~~v~~v~~sp~g~~l~s~s  421 (473)
                      ..+|++.++|.++++.-.+      ..|+-++.. |+....+.               ..+...-+++++|||+.|.++.
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            3456666777777776666      677777765 55433321               1345688999999999655543


Q ss_pred             C-----CC--c-------EEEE--ECCC-C----ceeecccc-----cCCCEEEEEEeeCCCEEE
Q 011978          422 K-----DS--T-------LKVW--DIRT-Q----KLKQDLPG-----HADEVFAVDWSPDGEKVA  460 (473)
Q Consensus       422 ~-----Dg--~-------i~iw--d~~~-~----~~~~~~~~-----h~~~i~~l~~s~d~~~l~  460 (473)
                      .     |+  .       ++|+  |..+ +    +....+..     ....|..+.+-+|+++|+
T Consensus       166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv  230 (326)
T PF13449_consen  166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV  230 (326)
T ss_pred             CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence            2     32  1       4554  4443 2    12233332     345688899999998765

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.24  E-value=31  Score=37.46  Aligned_cols=150  Identities=14%  Similarity=0.215  Sum_probs=83.9

Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      +..+-|+.+.+|+..++.....+.+-.+.|..+.+-..   ..+.|-...                         ..++.
T Consensus        93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkP---kpgvFv~~I-------------------------qhlLv  144 (1311)
T KOG1900|consen   93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKP---KPGVFVPEI-------------------------QHLLV  144 (1311)
T ss_pred             eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecC---CCCcchhhh-------------------------heeEE
Confidence            45677999999999998887877777777777654211   011111000                         01111


Q ss_pred             ecCCceEEEEeCCCCC--CCe------eeecCcccceeEEEECCCCcEEEEEECCCcEEE--EeCCCC---c-e------
Q 011978          335 GSDDFTMFLWEPAVSK--QPK------TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL--WNGTTG---K-F------  394 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~--~~~------~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l--wd~~~~---~-~------  394 (473)
                      -+.--.+.++-+....  ...      .......-.|+++....+|+.+.+|-.| .++=  |....+   + +      
T Consensus       145 vaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt  223 (1311)
T KOG1900|consen  145 VATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLT  223 (1311)
T ss_pred             ecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCc
Confidence            1111112222111000  000      1111223468889888889988776555 3321  111111   0 0      


Q ss_pred             ----------EEEee-CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          395 ----------VAVFR-GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       395 ----------~~~~~-~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                                +-.+. .+..+|..++....-+.|.+-+..|+|.+||+..
T Consensus       224 ~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  224 KSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence                      11122 4677999999988888999999999999999975

>PHA03098 kelch-like protein; Provisional

Probab=82.13  E-value=58  Score=32.63  Aligned_cols=63  Identities=14%  Similarity=0.225  Sum_probs=34.9

Q ss_pred             CCCcEEEEEECCC--------cEEEEeCCCCceEEE--eeCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCC
Q 011978          370 PDGQWVASASFDK--------SIKLWNGTTGKFVAV--FRGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQ  434 (473)
Q Consensus       370 p~g~~lasgs~d~--------~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~  434 (473)
                      .++...+.|+.+.        .+..||..+.+....  +.........+.  .+++.++.|+.+     +.+.+||..+.
T Consensus       436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            3566777776432        388889887654332  111111111222  267777777654     46888888764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=81.07  E-value=54  Score=31.51  Aligned_cols=147  Identities=15%  Similarity=0.144  Sum_probs=74.1

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCc--e--eEEEcCCCCCEEEEEECC-----CCCeEEEEecCCeEEEeeCCC--Cc----
Q 011978          119 DGRQLASGSGDTTVRLWDLNTQT--P--MFKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQT--GK----  183 (473)
Q Consensus       119 ~~~~lat~s~d~~i~iwd~~~~~--~--~~~~~~~~~~v~~l~~s~-----dg~~l~s~~~dg~i~iwd~~~--~~----  183 (473)
                      +...++.||..|.+|||+.....  +  +.--..-..+|..++.-+     +...||. =--.++.+|.+..  |.    
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            34689999999999999985432  1  111123356787777532     1223333 3345677776621  11    


Q ss_pred             -c-ccccCCCcCCcEEE--EEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEee
Q 011978          184 -P-SGNPLSGHKKWITG--ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS  258 (473)
Q Consensus       184 -~-~~~~~~~~~~~v~~--i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~  258 (473)
                       . .......|.-.-.+  +.+-|..-......+..-+.||.+.+++-+.......+.+ ..--..+.+.+. ..+++++
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s  193 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS  193 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence             0 00111222211111  1222211111235667778999999998765544333333 111122334332 3567777


Q ss_pred             cCCeEEEEE
Q 011978          259 QDCTIKVWE  267 (473)
Q Consensus       259 ~d~~i~~wd  267 (473)
                      .+..+.-|.
T Consensus       194 ss~~l~~Yk  202 (418)
T PF14727_consen  194 SSWTLECYK  202 (418)
T ss_pred             CceeEEEec
Confidence            776666554

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=80.76  E-value=25  Score=27.40  Aligned_cols=116  Identities=9%  Similarity=0.139  Sum_probs=62.4

Q ss_pred             EECCCCCeEEEEecCCeEEEeeCCCCccccc------cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC
Q 011978          157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGN------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR  230 (473)
Q Consensus       157 ~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~  230 (473)
                      .|......|++++.-|+|.|+++........      .+-.-...|++++--+.........++.| ...++..||+...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcccC
Confidence            4555556788888889999998764332110      11122445677665554433344455554 4568889998876


Q ss_pred             eEEEEecCccccEEEEEec---C-CCeEEEeecCCeEEEEECCCCcee
Q 011978          231 KCVICLSGHTLAVTCVKWG---G-DGVIYTGSQDCTIKVWETTQGKLI  274 (473)
Q Consensus       231 ~~~~~~~~h~~~v~~~~~~---~-~~~l~s~~~d~~i~~wd~~~~~~~  274 (473)
                      .-+.... -...|.++.+.   . +..++..+....|.-||....+..
T Consensus        84 ~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   84 SDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             chhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            5443221 22345555542   1 223443444456666665444433

>smart00564 PQQ beta-propeller repeat

Probab=80.50  E-value=4.6  Score=22.23  Aligned_cols=26  Identities=31%  Similarity=0.659  Sum_probs=21.9

Q ss_pred             CCeEEEeecCCeEEEEECCCCceeee
Q 011978          251 DGVIYTGSQDCTIKVWETTQGKLIRE  276 (473)
Q Consensus       251 ~~~l~s~~~d~~i~~wd~~~~~~~~~  276 (473)
                      ++.++.++.++.+..+|..+|+.+..
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence            56788899999999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.34  E-value=21  Score=29.49  Aligned_cols=34  Identities=12%  Similarity=0.316  Sum_probs=26.5

Q ss_pred             cEEEEEeceeccCCC-CceEEEeeCCCcEEEEECC
Q 011978          195 WITGISWEPVHLNAP-CRRFVSASKDGDARIWDVS  228 (473)
Q Consensus       195 ~v~~i~~~~~~~~~~-~~~~~s~s~dg~i~iwd~~  228 (473)
                      .+.+++|+|...... ...+++.+.++.|.+|...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            688999999766544 4577888899999999754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=80.01  E-value=57  Score=31.20  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=30.9

Q ss_pred             cceeEEEECCCCcEEEEEE-CCCcEEEEeCCCC---ceEEEee-C---------------CccCEEEEEEecCCCEEEEE
Q 011978          361 QLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG---KFVAVFR-G---------------HVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~---~~~~~~~-~---------------h~~~v~~v~~sp~g~~l~s~  420 (473)
                      ..|+.|.+|.|.++|.... .+|.||.||+...   +++.... +               -.+...-|..|-||+.|...
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            4578899999999988766 5899999998764   3333221 1               01233556777787776654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	473
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-46
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-29
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-23
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-29
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-23
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-29
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-23
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-29
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-23
2h9l_A	329	Wdr5delta23 Length = 329		6e-29
2h9l_A	329	Wdr5delta23 Length = 329		3e-23
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-29
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-23
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-29
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-23
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-29
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-23
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-29
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-23
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-29
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-23
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-29
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-23
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-29
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-23
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-28
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-23
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-28
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-23
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-28
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-23
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-27
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		9e-27
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-26
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-26
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-14
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-26
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-14
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-26
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-21
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-16
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-23
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		7e-22
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-22
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-20
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-14
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		7e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-20
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-17
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-19
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-19
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-13
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-18
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		9e-09
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-18
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-18
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		9e-09
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		6e-18
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-09
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		6e-18
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-09
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-17
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-17
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-17
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-16
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-16
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-15
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-15
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-15
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-15
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-15
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-15
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		9e-15
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-14
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-14
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-13
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-14
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-13
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		9e-14
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-13
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		9e-14
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-13
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-07
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-13
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-13
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-13
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-13
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		5e-13
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		5e-13
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-13
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		7e-13
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		7e-13
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-13
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-09
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-12
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-09
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-12
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		8e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-11
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-11
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		9e-11
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		9e-11
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-07
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		2e-09
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		9e-09
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		1e-08
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-08
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-08
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-08
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-07
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		1e-08
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-08
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		5e-08
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		7e-08
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-08
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-07
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-06
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		2e-06
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		2e-04
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		4e-06
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-06
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		7e-06
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		2e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		7e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		7e-06
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		9e-06
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-04
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		3e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		3e-05
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		6e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		2e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		2e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		3e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  184 bits (466), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/384 (33%), Positives = 209/384 (54%), Gaps = 24/384 (6%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++  NR  A    H+ +V  VAFSPDG+ +AS S D TV+LW+ N Q  +   TGH + V
Sbjct: 6   VKERNRLEA----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSV 60
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +A+S DG+ + S S    ++ W+ + G+     L+GH   + G+++ P       +  
Sbjct: 61  WGVAFSPDGQTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGVAFSP-----DGQTI 113
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
            SAS D   ++W+ +  + +  L+GH+ +V  V +  DG  I + S D T+K+W    G+
Sbjct: 114 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 171
Query: 273 LIRELKGHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA--- 328
           L++ L GH   V  +A S +   + + + D T K ++   ++ +      + ++G A   
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 231
Query: 329 -PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
             + + S SDD T+ LW    + Q    +TGH   VN V F PDGQ +ASAS DK++KLW
Sbjct: 232 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 388 NGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447
           N   G+ +    GH   V+ +++S D + + S S D T+K+W+   Q L Q L GH+  V
Sbjct: 290 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSV 347
Query: 448 FAVDWSPDGEKVASGGKDRVLKLW 471
           + V +SPDG+ +AS   D+ +KLW
Sbjct: 348 WGVAFSPDGQTIASASDDKTVKLW 371

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 95
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 96  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 185
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 186 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 236
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 296
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 38  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 97
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 98  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 187
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 188 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 238
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 298
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 299 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 332

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 40  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 99
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  125 bits (314), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 80  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  125 bits (314), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 22  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 78
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 79  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 168
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 169 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 219
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 280 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 313

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 21  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 80
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 81  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 34  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 90
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 91  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 180
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 181 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 231
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 292 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 325

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 33  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 92
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 93  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 74  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 16  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 74  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 16  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 13  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 69
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 70  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 159
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 160 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 210
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 271 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 304

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 12  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 71
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 72  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 18  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 74
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 75  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 164
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 165 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 215
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 276 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 309

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 17  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 76
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 77  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 80  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 80  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 16  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 72
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 73  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 162
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 163 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 213
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 274 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 307

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 15  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 74
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 75  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L + S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 77  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KLW
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+A++S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 19  KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 77  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KL+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLY 311

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 19  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 77  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
           ++KLW+ + GK +  + GH    Y I  +      + ++SGS+D+ + +W+++T+++ Q 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           L GH D V +    P    +AS     D+ +KL+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLF 311

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  ++WS+
Sbjct: 19  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           DS LL+S S D TLK+WD+ + K  + L GH++ VF  +++P    + SG  D  +++W
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 148/295 (50%), Gaps = 17/295 (5%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH K ++ + + P           S+S D   +IW     K    +SGH L ++ V W
Sbjct: 22  LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
             D  ++ + S D T+K+W+ + GK ++ LKGH ++V     + +  L  +G+FD + + 
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
           +     M    L  ++     +  N    L VS S D    +W+ A  +  KT +     
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLL 418
            V+ V FSP+G+++ +A+ D ++KLW+ + GK +  + GH    Y I  +      + ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 12  VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV    C+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L  +  L   +     K Y+  +  K     
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNMVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 302 LENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 147/295 (49%), Gaps = 17/295 (5%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH K ++ + + P           S+S D   +IW     K    +SGH L ++ V W
Sbjct: 22  LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
             D  ++ + S D T+K+W+ + GK ++ LKGH ++V     + +  L  +G+FD + + 
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
           +     M    L  ++     +  N    L VS S D    +W+ A  +  KT +     
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLL 418
            V+ V FSP+G+++ +A+ D  +KLW+ + GK +  + GH    Y I  +      + ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
           SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 173/406 (42%), Gaps = 60/406 (14%)
Query: 99   RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
             C  T+ GHT +V    FSPD   LAS S D T+RLWD+ +     K    K + L    
Sbjct: 741  ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 799
Query: 155  ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
                      C +WSADG  ++  +K  ++  +D  T        +GH   I    + P 
Sbjct: 800  PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 858
Query: 205  -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
             HL       V A       +W++  R  V    GH   V  V +  DG  + T S D T
Sbjct: 859  DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 263  IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
            I+VWET +        L +E+        ++ L+ +        A +TG  D     Y  
Sbjct: 913  IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 967
Query: 310  PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
              ++    L  +        E +  G +D  + + E      P  R+     GH++ V H
Sbjct: 968  EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1015
Query: 366  VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST 425
            + F+ DG+ + S+S D  I++WN  TG +V   + H   V       DSR LLS S D T
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSR-LLSWSFDGT 1073
Query: 426  LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
            +KVW++ T ++++D   H   V +   S D  K +S   D+  K+W
Sbjct: 1074 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
           +R+ S   D T+ +++ A + +    +  H+  V    FS D  ++A+ S DK +K+W+ 
Sbjct: 635 QRIASCGADKTLQVFK-AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 693
Query: 390 TTGKFVAVFRGHVGPVYQISWSADSR--LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447
            TGK V  +  H   V    ++  S   LL +GS D  LK+WD+  ++ +  + GH + V
Sbjct: 694 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 753
Query: 448 FAVDWSPDGEKVASGGKDRVLKLW 471
               +SPD E +AS   D  L+LW
Sbjct: 754 NHCRFSPDDELLASCSADGTLRLW 777

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
           V R H   VY   +S D + + S   D TL+V+   T +   D+  H DEV    +S D 
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 457 EKVASGGKDRVLKLW 471
             +A+   D+ +K+W
Sbjct: 677 SYIATCSADKKVKIW 691

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 173/406 (42%), Gaps = 60/406 (14%)
Query: 99   RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
             C  T+ GHT +V    FSPD   LAS S D T+RLWD+ +     K    K + L    
Sbjct: 734  ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 792
Query: 155  ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
                      C +WSADG  ++  +K  ++  +D  T        +GH   I    + P 
Sbjct: 793  PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851
Query: 205  -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
             HL       V A       +W++  R  V    GH   V  V +  DG  + T S D T
Sbjct: 852  DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 263  IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
            I+VWET +        L +E+        ++ L+ +        A +TG  D     Y  
Sbjct: 906  IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 960
Query: 310  PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
              ++    L  +        E +  G +D  + + E      P  R+     GH++ V H
Sbjct: 961  EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1008
Query: 366  VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST 425
            + F+ DG+ + S+S D  I++WN  TG +V   + H   V       DSR LLS S D T
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSR-LLSWSFDGT 1066
Query: 426  LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
            +KVW++ T ++++D   H   V +   S D  K +S   D+  K+W
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
           +R+ S   D T+ +++ A + +    +  H+  V    FS D  ++A+ S DK +K+W+ 
Sbjct: 628 QRIASCGADKTLQVFK-AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686
Query: 390 TTGKFVAVFRGHVGPVYQISWSADSR--LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447
            TGK V  +  H   V    ++  S   LL +GS D  LK+WD+  ++ +  + GH + V
Sbjct: 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746
Query: 448 FAVDWSPDGEKVASGGKDRVLKLW 471
               +SPD E +AS   D  L+LW
Sbjct: 747 NHCRFSPDDELLASCSADGTLRLW 770

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
           V R H   VY   +S D + + S   D TL+V+   T +   D+  H DEV    +S D 
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 457 EKVASGGKDRVLKLW 471
             +A+   D+ +K+W
Sbjct: 670 SYIATCSADKKVKIW 684

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 149/330 (45%), Gaps = 24/330 (7%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           ++GH   V  V F P    + S S D T+++WD  T        GH + V  I++   GK
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
            L S S    ++ WD Q G      + GH   ++ +S  P   N      VSAS+D   +
Sbjct: 164 LLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMP---NGD--HIVSASRDKTIK 217
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
           +W+V    CV   +GH   V  V+   DG +I + S D T++VW     +   EL+ H H
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342
            V  ++ + E +            YSS  E    A     K  G     L+SGS D T+ 
Sbjct: 278 VVECISWAPESS------------YSSISE----ATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
           +W+ +      T + GH   V  V F   G+++ S + DK++++W+    + +     H 
Sbjct: 322 MWDVSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380
Query: 403 GPVYQISWSADSRLLLSGSKDSTLKVWDIR 432
             V  + +   +  +++GS D T+KVW+ R
Sbjct: 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 145/331 (43%), Gaps = 28/331 (8%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           +  +GH++ V  + +      +VS S+   ++ WD +TG      L GH   +  IS   
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDIS--- 157
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYTGSQDC 261
              +   +   S S D   ++WD    +C+  + GH   V+ V     GD ++ + S+D 
Sbjct: 158 --FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDK 214
Query: 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAALER 320
           TIK+WE   G  ++   GH  WV  +  + +  L  + + D T + +    +  KA L  
Sbjct: 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
           +  +                   W P  S    +  TG +   +       G ++ S S 
Sbjct: 275 HRHV--------------VECISWAPESSYSSISEATGSETKKS----GKPGPFLLSGSR 316
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440
           DK+IK+W+ +TG  +    GH   V  + + +  + +LS + D TL+VWD + ++  + L
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376
Query: 441 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             H   V ++D+      V +G  D+ +K+W
Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 2/168 (1%)
Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-KTRMTGHQQLV 363
           K+++S   ++K  +E  +K+   A E   SG         +  + + P K  ++GH+  V
Sbjct: 53  KKWTSVIRLQKKVMELESKL-NEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPV 111
Query: 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423
             V F P    + SAS D +IK+W+  TG F    +GH   V  IS+    +LL S S D
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 171
Query: 424 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
            T+K+WD +  +  + + GH   V +V   P+G+ + S  +D+ +K+W
Sbjct: 172 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 47/263 (17%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270
           ++ VS  +D   +IWD +  +C   L+GHT +V C+++  + VI TGS D T++VW+   
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNT 202
Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
           G+++  L  H   V  L                                R+N        
Sbjct: 203 GEMLNTLIHHCEAVLHL--------------------------------RFNN------G 224
Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            +V+ S D ++ +W+ A       R  + GH+  VN V F  D +++ SAS D++IK+WN
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282
Query: 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448
            +T +FV    GH   +  + +    RL++SGS D+T+++WDI      + L GH + V 
Sbjct: 283 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 340
Query: 449 AVDWSPDGEKVASGGKDRVLKLW 471
            + +  D +++ SG  D  +K+W
Sbjct: 341 CIRF--DNKRIVSGAYDGKIKVW 361

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
           D Q + S   D +IK+W+  T +   +  GH G V  + +  D R++++GS DST++VWD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199
Query: 431 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           + T ++   L  H + V  + +  +   + +  KDR + +W
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVW 238

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 62/342 (18%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           + GH + V++      G ++ SGS D T+++W   T   +    GH   V    WS+  +
Sbjct: 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 168
Query: 164 H--LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
              ++SGS    L+ W+ +TG+   + L GH   +       +HL+   +R VS S+D  
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTV-----RCMHLHE--KRVVSGSRDAT 220
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
            R+WD+   +C+  L GH  AV CV++ G  V+ +G+ D  +KVW+      +  L+GH 
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTLQGHT 279
Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
           + V SL            FD                              +VSGS D ++
Sbjct: 280 NRVYSL-----------QFDGI---------------------------HVVSGSLDTSI 301
Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG- 400
            +W+        T +TGHQ L + +    +   + S + D ++K+W+  TG+ +   +G 
Sbjct: 302 RVWDVETGNCIHT-LTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGP 358
Query: 401 --HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440
             H   V  + ++ +   +++ S D T+K+WD++T +  ++L
Sbjct: 359 NKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNL 398

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 125/272 (45%), Gaps = 27/272 (9%)
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG---DGVIYTGSQDCTIKVWET 268
           R VS S D   ++W     KC+  L GHT  V    W     D +I +GS D T+KVW  
Sbjct: 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNA 186
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE------MKKAALERYN 322
             G+ I  L GH   V  + L  E  + +G+ D T + +           M   A  R  
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
           +  G    R+VSG+ DF + +W+P       T + GH   V  + F  DG  V S S D 
Sbjct: 246 QYDG---RRVVSGAYDFMVKVWDPETETCLHT-LQGHTNRVYSLQF--DGIHVVSGSLDT 299
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG 442
           SI++W+  TG  +    GH      +    +  +L+SG+ DST+K+WDI+T +  Q L G
Sbjct: 300 SIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 443 ---HADEVFAVDWSPDGEKVASGGKDRVLKLW 471
              H   V  + ++ +   V +   D  +KLW
Sbjct: 358 PNKHQSAVTCLQFNKNF--VITSSDDGTVKLW 387

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 158/361 (43%), Gaps = 78/361 (21%)
Query: 103 TIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCI 156
           T+  HT+ V ++A   D   +  S S D ++ LW L      +     + TGH ++V  +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
             S+DG+  +SGS  GEL+ WD   G  S     GH K +  ++      +   R+ VSA
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAG-VSTRRFVGHTKDVLSVA-----FSLDNRQIVSA 490
Query: 217 SKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGDGV---IYTGSQDCTIKVWETT 269
           S+D   ++W+ +L +C   +S    GH   V+CV++  + +   I + S D T+KVW  +
Sbjct: 491 SRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
             KL   L GH  +V+++A+S + +L                                  
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSL---------------------------------- 575
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
               SG  D  + LW+ A  K  K        +++ + FSP+  W+ +A+ +  IK+W+ 
Sbjct: 576 --CASGGKDGVVLLWDLAEGK--KLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDL 630
Query: 390 TTGKFVAVFR----------GHVGP-------VY--QISWSADSRLLLSGSKDSTLKVWD 430
            +   V   +           + GP       +Y   ++WSAD   L SG  D  ++VW 
Sbjct: 631 ESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690
Query: 431 I 431
           I
Sbjct: 691 I 691

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 113/249 (45%), Gaps = 51/249 (20%)
Query: 236 LSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSLA 288
           +  HT  VT +    D   +I + S+D +I +W+ T+     G   R L GH H+V  + 
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
           LS++     G F                                +SGS D  + LW+ A 
Sbjct: 438 LSSD-----GQF-------------------------------ALSGSWDGELRLWDLAA 461
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF----RGHVGP 404
               + R  GH + V  V FS D + + SAS D++IKLWN T G+          GH   
Sbjct: 462 GVSTR-RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDW 519
Query: 405 VYQISWSADSR--LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462
           V  + +S ++    ++S S D T+KVW++   KL+  L GH   V  V  SPDG   ASG
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 463 GKDRVLKLW 471
           GKD V+ LW
Sbjct: 580 GKDGVVLLW 588

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 133/334 (39%), Gaps = 52/334 (15%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
           GH N VLC+ W  D + +VS S+ G++  WD  T     + ++    W+   ++ P    
Sbjct: 62  GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-HAVTMPCTWVMACAYAPSGCA 120
Query: 208 APCRRFVSASKDGDARIW--------DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
             C        D    ++        +++ +K  + +  + L+  C     D  I T S 
Sbjct: 121 IAC-----GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA-CSFTNSDMQILTASG 174
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
           D T  +W+   G+L++   GHG  V  L L+                   P E       
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLA-------------------PSET------ 209
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
                 GN     VSG  D    +W+   S Q       H+  VN V + P G   AS S
Sbjct: 210 ------GNT---FVSGGCDKKAMVWDMR-SGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
            D + +L++    + VA++     +     + +S   RLL +G  D T+ VWD+      
Sbjct: 260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 319
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             L GH + V  +  SPDG    SG  D  L++W
Sbjct: 320 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 24/256 (9%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   V C+ W  D   I + SQD  + VW++        +     WV + A + +  
Sbjct: 60  LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 294 ALRTGAFDHTGKQY----SSPEEM---KKAALERYNKIKG----NAPERLVSGSDDFTMF 342
           A+  G  D+    Y       E M   KK+     N +      N+  ++++ S D T  
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179
Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGKFVAVFRG 400
           LW+   S Q      GH   V  +  +P   G    S   DK   +W+  +G+ V  F  
Sbjct: 180 LWDVE-SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238
Query: 401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE--VF---AVDWSPD 455
           H   V  + +        SGS D+T +++D+R  +   ++  ++ E  +F   +VD+S  
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR---EVAIYSKESIIFGASSVDFSLS 295
Query: 456 GEKVASGGKDRVLKLW 471
           G  + +G  D  + +W
Sbjct: 296 GRLLFAGYNDYTINVW 311

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 148/367 (40%), Gaps = 76/367 (20%)
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKA---------GELQCW---------DPQTGKP 184
           + K   H + V C+ +S DG++L +G            G L            DP+    
Sbjct: 57  LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116
Query: 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244
           S +P S    +I  + + P       +   + ++D   RIWD+  RK V+ L GH   + 
Sbjct: 117 SSSPSS--DLYIRSVCFSP-----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 169
Query: 245 CVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
            + +   GD ++ +GS D T+++W+   G+             SL LS E  + T A   
Sbjct: 170 SLDYFPSGDKLV-SGSGDRTVRIWDLRTGQC------------SLTLSIEDGVTTVAVSP 216
Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
              +Y                I   + +R V   D  T FL E   S+      TGH+  
Sbjct: 217 GDGKY----------------IAAGSLDRAVRVWDSETGFLVERLDSENESG--TGHKDS 258
Query: 363 VNHVYFSPDGQWVASASFDKSIKLWN------------GTTGKFVAVFRGHVGPVYQISW 410
           V  V F+ DGQ V S S D+S+KLWN              +G     + GH   V  ++ 
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 318
Query: 411 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAV------DWSPDGEKVASGGK 464
           + +   +LSGSKD  +  WD ++      L GH + V +V         P+    A+G  
Sbjct: 319 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378
Query: 465 DRVLKLW 471
           D   ++W
Sbjct: 379 DCKARIW 385

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 84/166 (50%), Gaps = 23/166 (13%)
Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRM---TGHQQLVNHVYFSPDGQWVASASFDKS 383
           + P+ L   ++D+ + L+ PA+ ++    +     H  +V  V FS DG+++A+   +K+
Sbjct: 29  SVPDALKKQTNDYYI-LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKT 86
Query: 384 IKLWNGTTGKFVAVFRGHVGP------------------VYQISWSADSRLLLSGSKDST 425
            +++  + G  VA                          +  + +S D + L +G++D  
Sbjct: 87  TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146
Query: 426 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           +++WDI  +K+   L GH  +++++D+ P G+K+ SG  DR +++W
Sbjct: 147 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 138/334 (41%), Gaps = 57/334 (17%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
           GH   +  + W  D + LVS S+ G+L  WD   T K    PL     W+   ++ P   
Sbjct: 64  GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 121
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
                 L+  C  +   +++G+ R+     R+    L+GHT  ++C ++  D  I T S 
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
           D T  +W+   G+      GH   V SL+L+ +  L                        
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL------------------------ 209
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
                        VSG+ D +  LW+       +T  TGH+  +N + F P+G   A+ S
Sbjct: 210 ------------FVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGS 256
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
            D + +L++    + +  +     +  +  +S+S   RLLL+G  D    VWD       
Sbjct: 257 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 316
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             L GH + V  +  + DG  VA+G  D  LK+W
Sbjct: 317 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 398 FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 457
            RGH+  +Y + W  DSRLL+S S+D  L +WD  T      +P  +  V    ++P G 
Sbjct: 62  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 458 KVASGGKDRVLKLW 471
            VA GG D +  ++
Sbjct: 122 YVACGGLDNICSIY 135

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 138/334 (41%), Gaps = 57/334 (17%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
           GH   +  + W  D + LVS S+ G+L  WD   T K    PL     W+   ++ P   
Sbjct: 53  GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
                 L+  C  +   +++G+ R+     R+    L+GHT  ++C ++  D  I T S 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
           D T  +W+   G+      GH   V SL+L+ +  L                        
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL------------------------ 198
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
                        VSG+ D +  LW+       +T  TGH+  +N + F P+G   A+ S
Sbjct: 199 ------------FVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGS 245
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
            D + +L++    + +  +     +  +  +S+S   RLLL+G  D    VWD       
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             L GH + V  +  + DG  VA+G  D  LK+W
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 398 FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 457
            RGH+  +Y + W  DSRLL+S S+D  L +WD  T      +P  +  V    ++P G 
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 458 KVASGGKDRVLKLW 471
            VA GG D +  ++
Sbjct: 111 YVACGGLDNICSIY 124

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 138/334 (41%), Gaps = 57/334 (17%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
           GH   +  + W  D + LVS S+ G+L  WD   T K    PL     W+   ++ P   
Sbjct: 53  GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
                 L+  C  +   +++G+ R+     R+    L+GHT  ++C ++  D  I T S 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
           D T  +W+   G+      GH   V SL+L+ +  L                        
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL------------------------ 198
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
                        VSG+ D +  LW+       +T  TGH+  +N + F P+G   A+ S
Sbjct: 199 ------------FVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGS 245
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
            D + +L++    + +  +     +  +  +S+S   RLLL+G  D    VWD       
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             L GH + V  +  + DG  VA+G  D  LK+W
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 398 FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 457
            RGH+  +Y + W  DSRLL+S S+D  L +WD  T      +P  +  V    ++P G 
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 458 KVASGGKDRVLKLW 471
            VA GG D +  ++
Sbjct: 111 YVACGGLDNICSIY 124

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 57/334 (17%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
           GH   +  + W  D + L+S S+ G+L  WD   T K    PL     W+   ++ P   
Sbjct: 53  GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
                 L+  C  +   +++G+ R+     R+    L+GHT  ++C ++  D  I T S 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
           D T  +W+   G+      GH   V SL+L+ +  L                        
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL------------------------ 198
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
                        VSG+ D +  LW+       +T  TGH+  +N + F P+G   A+ S
Sbjct: 199 ------------FVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGS 245
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
            D + +L++    + +  +     +  +  +S+S   RLLL+G  D    VWD       
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             L GH + V  +  + DG  VA+G  D  LK+W
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
             RGH+  +Y + W  DSRLLLS S+D  L +WD  T      +P  +  V    ++P G
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 457 EKVASGGKDRVLKLW 471
             VA GG D +  ++
Sbjct: 110 NYVACGGLDNICSIY 124

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 57/334 (17%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
           GH   +  + W  D + L+S S+ G+L  WD   T K    PL     W+   ++ P   
Sbjct: 53  GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
                 L+  C  +   +++G+ R+     R+    L+GHT  ++C ++  D  I T S 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
           D T  +W+   G+      GH   V SL+L+ +  L                        
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL------------------------ 198
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
                        VSG+ D +  LW+       +T  TGH+  +N + F P+G   A+ S
Sbjct: 199 ------------FVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGS 245
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
            D + +L++    + +  +     +  +  +S+S   RLLL+G  D    VWD       
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             L GH + V  +  + DG  VA+G  D  LK+W
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
             RGH+  +Y + W  DSRLLLS S+D  L +WD  T      +P  +  V    ++P G
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 457 EKVASGGKDRVLKLW 471
             VA GG D +  ++
Sbjct: 110 NYVACGGLDNICSIY 124

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 11/152 (7%)
Query: 331 RLVSGSDDFTMFLWEPAVSKQ--------PKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
           ++VS S D T+  W P   +         P  R+ GH   V+ V  S +G +  SAS+D 
Sbjct: 30  KVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDH 89
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG 442
           S++LWN   G+    F GH   V  +++S D+R ++SG +D+ L+VW+++ + +     G
Sbjct: 90  SLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG 149
Query: 443 -HADEVFAVDWSP--DGEKVASGGKDRVLKLW 471
            H D V  V +SP  D   + SGG D ++K+W
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 42/222 (18%)
Query: 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
           G+++   +   T Q  L   LKGH  WV  +A + ++                       
Sbjct: 14  GTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQF----------------------- 50
Query: 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDG 372
                       P+ ++S S D T+ +W+    +     P+  + GH   V+ V  S DG
Sbjct: 51  ------------PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 98
Query: 373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD-I 431
           Q+  S S+D +++LW+ TTG     F GH   V  +++S+D+R ++SGS+D T+K+W+ +
Sbjct: 99  QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158
Query: 432 RTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLW 471
              K       H++ V  V +SP+     + S G D+++K+W
Sbjct: 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 42/211 (19%)
Query: 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327
           T Q  L   LKGH  WV  +A + ++                                  
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQF---------------------------------- 27
Query: 328 APERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383
            P+ ++S S D T+ +W+    +     P+  + GH   V+ V  S DGQ+  S S+D +
Sbjct: 28  -PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 86
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD-IRTQKLKQDLPG 442
           ++LW+ TTG     F GH   V  +++S+D+R ++SGS+D T+K+W+ +   K       
Sbjct: 87  LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES 146
Query: 443 HADEVFAVDWSPDGEK--VASGGKDRVLKLW 471
           H++ V  V +SP+     + S G D+++K+W
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 120/276 (43%), Gaps = 30/276 (10%)
Query: 174 LQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
           L+ W      P    L GH    IT + +E  ++       ++ + D   R++D   +K 
Sbjct: 102 LKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYV-------ITGADDKXIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
           ++ LSGH   V  +K+   G++ +GS D T++VW+  +G      +GH   V  L +  E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
           Y     + TG+ D+T   +  P+E              + P+       D+ +    P  
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKE-------------SSVPDH--GEEHDYPLVFHTPEE 258
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
           +      + GH   V  V  S  G  V S S+D ++ +W+    K + +  GH   +Y  
Sbjct: 259 NPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYST 316
Query: 409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
            +  + +  +S S D+T+++WD+   +L   L GH 
Sbjct: 317 IYDHERKRCISASXDTTIRIWDLENGELXYTLQGHT 352

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 126/296 (42%), Gaps = 38/296 (12%)
Query: 174 LQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
           L+ W      P    L GH    IT + +E  ++       ++ + D   R++D   +K 
Sbjct: 102 LKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYV-------ITGADDKMIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
           ++ LSGH   V  +K+   G++ +GS D T++VW+  +G      +GH   V  L +  E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
           Y     + TG+ D+T   +  P+E              + P+       D+ +    P  
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKE-------------SSVPDH--GEEHDYPLVFHTPEE 258
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
           +      + GH   V  V  S  G  V S S+D ++ +W+    K + +  GH   +Y  
Sbjct: 259 NPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST 316
Query: 409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV--------FAVDWSPDG 456
            +  + +  +S S D+T+++WD+   +L   L GH   V        F V  + DG
Sbjct: 317 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADG 372

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 30  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
           +LW+  TG+    F GH   V  +     + +++SGS+D T+KVW I+ Q L   L GH 
Sbjct: 90  RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LLGHN 148
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
           D V  V   P      D   + S G D+++K W
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 30  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
           +LW+  TG+    F GH   V  +     + +++SGS+D T+KVW I+ Q L   L GH 
Sbjct: 90  RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LLGHN 148
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
           D V  V   P      D   + S G D+++K W
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 30  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
           +LW+  TG+    F GH   V  +     + +++SGS+D T+KVW I+ Q L   L GH 
Sbjct: 90  RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LLGHN 148
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
           D V  V   P      D   + S G D+++K W
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 30  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
           +LW+  TG+    F GH   V  +     + +++SGS+D T+KVW I+ Q L   L GH 
Sbjct: 90  RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LLGHN 148
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
           D V  V   P      D   + S G D+++K W
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 24  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 83
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
           +LW+  TG+    F GH   V  +     + +++SGS+D T+KVW I+ Q L   L GH 
Sbjct: 84  RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LLGHN 142
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
           D V  V   P      D   + S G D+++K W
Sbjct: 143 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 175

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 68/350 (19%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH-- 205
           GH   V  + W+ +   +VS S+ G L  W+  T + + + +  H  W+   ++ P    
Sbjct: 64  GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT-HAIKLHCPWVMECAFAPNGQS 122
Query: 206 -----LNAPCRRF---VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIY 255
                L++ C  F     A +DG+  +  V        L+GH    +  ++  D    + 
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRV--------LTGHKGYASSCQYVPDQETRLI 174
Query: 256 TGSQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312
           TGS D T  +W+ T G+ I         GH  + L+LS                      
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS---------------------- 212
Query: 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
                    N +  N     +SGS D T+ LW+  ++ +      GH+  +N V F PDG
Sbjct: 213 --------INSLNANM---FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 373 QWVASASFDKSIKLWNGTTGKFVAVFR-------GHVGPVYQISWSADSRLLLSGSKDST 425
           Q   + S D + +L++  TG  + V+          +  V  +++S   RLL +G  +  
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321
Query: 426 LKVWDIRTQKLKQDL----PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
             VWD    ++  +L      H   +  +  S DG  + +G  D+ LK+W
Sbjct: 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
             +GH G VY + W+ +   ++S S+D  L VW+  T +    +  H   V    ++P+G
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 457 EKVASGGKDRVLKLW 471
           + VA GG D    ++
Sbjct: 121 QSVACGGLDSACSIF 135

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 30  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
           +LW+  TG+    F GH   V  +     +  ++SGS+D T+KVW I+ Q L   L GH 
Sbjct: 90  RLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLAT-LLGHN 148
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
           D V  V   P      D   + S G D+ +K W
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 163/423 (38%), Gaps = 45/423 (10%)
Query: 83  SIVYQPQAVFRI-------------RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD 129
           S+ ++P   FRI              P  +  +T   HT+ V SV ++PDG   AS  GD
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211
Query: 130 TTVRLWD--LNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
            T+ L++    T+T +F     K   H   V  + WS DG  + S S    ++ W+  T 
Sbjct: 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271
Query: 183 K-----PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS 237
           K     P G  +   +    GI W         +  VS S +G     +  L        
Sbjct: 272 KVEKTIPVGTRIEDQQ---LGIIWTK-------QALVSISANGFINFVNPELGSIDQVRY 321
Query: 238 GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYAL 295
           GH  A+T +    DG  +++   +  I  W+ + G   R     H   +  +  +++  L
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
            T ++D   K   +      ++    NK+        VS   D  +      ++     +
Sbjct: 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441
Query: 356 MTGHQQLVNH--VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP--VYQISWS 411
           +T      N   V  S D Q+VA    D  + ++   +G  V+  +  V P  +  +++S
Sbjct: 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK-LSGASVSEVKTIVHPAEITSVAFS 500
Query: 412 ADSRLLLSGSKDSTLKVWDIRTQ---KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 468
            +   L++  +   +  + +              H  +V  V WSPD  ++A+G  D  +
Sbjct: 501 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560
Query: 469 KLW 471
            +W
Sbjct: 561 IVW 563

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92  FRIRPVNRCSAT----IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
           K+W ++  K+ + L 
Sbjct: 253 KIWNSSTYKVEKTLN 267

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 12/232 (5%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYS---- 308
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 309 -SPEEMKKAALERYNKIKGNA--PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
            + E+  +        +  N   P    SG  D T+ +W    S    T  TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423
           V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V    +     +++SGS+D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 424 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWMG 473
            TLK+W+  T K+++ L    +  + +   P G K  +ASG  +    L +G
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427
           F     W+   S D  I+++N  TG+ V  F  H   +  I+       +LSGS D T+K
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 428 VWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLW 471
           +W+      L+Q   GH   V  V ++P D    ASG  DR +K+W
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92  FRIRPVNRCS----ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
           K+W ++  K+ + L 
Sbjct: 253 KIWNSSTYKVEKTLN 267

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 12/232 (5%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYS---- 308
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 309 -SPEEMKKAALERYNKIKGNA--PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
            + E+  +        +  N   P    SG  D T+ +W    S    T  TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423
           V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V    +     +++SGS+D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 424 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWMG 473
            TLK+W+  T K+++ L    +  + +   P G K  +ASG  +    L +G
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427
           F     W+   S D  I+++N  TG+ V  F  H   +  I+       +LSGS D T+K
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 428 VWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLW 471
           +W+      L+Q   GH   V  V ++P D    ASG  DR +K+W
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92  FRIRPVNRCS----ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
           K+W ++  K+ + L 
Sbjct: 253 KIWNSSTYKVEKTLN 267

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 12/232 (5%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYS---- 308
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 309 -SPEEMKKAALERYNKIKGNA--PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
            + E+  +        +  N   P    SG  D T+ +W    S    T  TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423
           V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V    +     +++SGS+D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 424 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWMG 473
            TLK+W+  T K+++ L    +  + +   P G K  +ASG  +    L +G
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427
           F     W+   S D  I+++N  TG+ V  F  H   +  I+       +LSGS D T+K
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 428 VWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLW 471
           +W+      L+Q   GH   V  V ++P D    ASG  DR +K+W
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92  FRIRPVNRCS----ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
           K+W ++  K+ + L 
Sbjct: 253 KIWNSSTYKVEKTLN 267

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 12/232 (5%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYS---- 308
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 309 -SPEEMKKAALERYNKIKGNA--PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
            + E+  +        +  N   P    SG  D T+ +W    S    T  TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423
           V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V    +     +++SGS+D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 424 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWMG 473
            TLK+W+  T K+++ L    +  + +   P G K  +ASG  +    L +G
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427
           F     W+   S D  I+++N  TG+ V  F  H   +  I+       +LSGS D T+K
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 428 VWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLW 471
           +W+      L+Q   GH   V  V ++P D    ASG  DR +K+W
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
           ++ GH   V+SV  S      AS S D  +RLWDL     +            +A+S D 
Sbjct: 75  SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
           ++L +G+  G++  +  ++GK     L    K+I  I++ P       +   S + DG  
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSP-----DGKYLASGAIDGII 188
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
            I+D++  K +  L GH + +  + +  D  ++ T S D  IK+++     L   L GH 
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 282 HWVNSLAL 289
            WV ++A 
Sbjct: 249 SWVLNVAF 256

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 16/270 (5%)
Query: 214 VSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQ 270
           V+ S D   ++W     +  +   L GH L V  V       +  + S D  I++W+   
Sbjct: 52  VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111
Query: 271 GKLIRELKGH--GHWVNSLALSTEYALRTGAFDHTGKQ--YSSPEEMKKAALERYNKIK- 325
           GK I+ +       W  + +  ++Y L TG   H GK   +      K+ +L+   K   
Sbjct: 112 GKQIKSIDAGPVDAWTLAFSPDSQY-LATGT--HVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 326 --GNAPE--RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
               +P+   L SG+ D  + +++ A  K   T + GH   +  + FSPD Q + +AS D
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LEGHAMPIRSLTFSPDSQLLVTASDD 227
Query: 382 KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP 441
             IK+++           GH   V  +++  D    +S S D ++KVWD+ T+       
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287
Query: 442 GHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
            H D+V+ V ++ +G K+ S G D+ + ++
Sbjct: 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 29/248 (11%)
Query: 247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306
           ++GG G + TG  +C IK+    +    R +  + H + +   S++  +    FD+T K 
Sbjct: 106 EFGGFGSV-TGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLV----FDYT-KH 159
Query: 307 YSSPE---EMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWE----PAVSK-- 350
            + P+   E       R ++ +G       N    L+S SDD T+ LW+    P   K  
Sbjct: 160 PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV 219
Query: 351 QPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWN---GTTGKFVAVFRGHVGPVY 406
             K   TGH  +V  V +         S + D+ + +W+    TT K   +   H   V 
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 407 QISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-ASGG 463
            +S++  S  +L +GS D T+ +WD+R  KLK      H DE+F V WSP  E + AS G
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 464 KDRVLKLW 471
            DR L +W
Sbjct: 340 TDRRLNVW 347

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 113/248 (45%), Gaps = 29/248 (11%)
Query: 247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306
           ++GG G + TG  +C IK+    +    R    + H + +   S++  +    FD+T K 
Sbjct: 106 EFGGFGSV-TGKIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLV----FDYT-KH 159
Query: 307 YSSPE---EMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWE----PAVSK-- 350
            + P+   E       R ++ +G       N    L+S SDD T+ LW+    P   K  
Sbjct: 160 PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV 219
Query: 351 QPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWN---GTTGKFVAVFRGHVGPVY 406
             K   TGH  +V  V +         S + D+ + +W+    TT K   +   H   V 
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 407 QISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-ASGG 463
            +S++  S  +L +GS D T+ +WD+R  KLK      H DE+F V WSP  E + AS G
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 464 KDRVLKLW 471
            DR L +W
Sbjct: 340 TDRRLNVW 347

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-------VASASFDKSI 384
           L+S SDD T+ LW+   + +    +        H     D  W         S + D+ +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 385 KLW---NGTTGKFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-QD 439
            +W   N  T K       H   V  +S++  S  +L +GS D T+ +WD+R  KLK   
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 440 LPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
              H DE+F V WSP  E + AS G DR L +W
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-------VASASFDKSI 384
           L+S SDD T+ LW+   + +    +        H     D  W         S + D+ +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 385 KLW---NGTTGKFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-QD 439
            +W   N  T K       H   V  +S++  S  +L +GS D T+ +WD+R  KLK   
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 440 LPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
              H DE+F V WSP  E + AS G DR L +W
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 18/158 (11%)
Query: 332 LVSGSDDFTMFLWEPAVSKQ------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
           L+SGS D T+ +W+    +Q      P   +TGH   V+ +  S +  +  S+S+DK+++
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 386 LWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI--RTQKLKQDLPGH 443
           LW+  TG     F GH   VY +++S D+R +LS   +  +K+W+I    +    +   H
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 444 ADEVFAVDWSP---DGEKV-------ASGGKDRVLKLW 471
           +D V  V +SP      KV       AS G D  LK+W
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-------VASASFDKSI 384
           L+S SDD T+ LW+   + +    +        H     D  W         S + D+ +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 385 KLW---NGTTGKFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-QD 439
            +W   N  T K       H   V  +S++  S  +L +GS D T+ +WD+R  KLK   
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 320
Query: 440 LPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
              H DE+F V WSP  E + AS G DR L +W
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 13/154 (8%)
Query: 331 RLVSGSDDFTMFLWE-PAVSKQ-----PKTRMTGHQQLVNHV-YFSPDGQWVASASFDKS 383
            L+S SDD T+ LW+  AV K+      KT  TGH  +V  V +         S + D+ 
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 384 IKLWN---GTTGKFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-Q 438
           + +W+     T K       H   V  +S++  S  +L +GS D T+ +WD+R  KLK  
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 439 DLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
               H DE+F V WSP  E + AS G DR L +W
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 17/244 (6%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
           ++ V W  +G  +  G+    +++W+  Q K +R +  H   V SL+ ++ Y L +G+  
Sbjct: 70  ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 128
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
            H         E   A L  +++       AP+   L SG +D  + +W  A  +    P
Sbjct: 129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 188
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409
               T HQ  V  V + P   +       + D+ I++WN  +G  ++    H   V  I 
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 247
Query: 410 WSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 467
           WS   + L+SG     + L +W   T     +L GH   V ++  SPDG  VAS   D  
Sbjct: 248 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307
Query: 468 LKLW 471
           L+LW
Sbjct: 308 LRLW 311

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 338 DFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
           D +++LW  +     +  +M    + ++ V +  +G ++A  +    ++LW+    K + 
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPD 455
               H   V  +SW  +S +L SGS+   +   D+R  +     L GH+ EV  + W+PD
Sbjct: 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161
Query: 456 GEKVASGGKDRVLKLW 471
           G  +ASGG D ++ +W
Sbjct: 162 GRHLASGGNDNLVNVW 177

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 17/244 (6%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
           ++ V W  +G  +  G+    +++W+  Q K +R +  H   V SL+ ++ Y L +G+  
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 208
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
            H         E   A L  +++       AP+   L SG +D  + +W  A  +    P
Sbjct: 209 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409
               T HQ  V  V + P   +       + D+ I++WN  +G  ++    H   V  I 
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 327
Query: 410 WSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 467
           WS   + L+SG     + L +W   T     +L GH   V ++  SPDG  VAS   D  
Sbjct: 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 387
Query: 468 LKLW 471
           L+LW
Sbjct: 388 LRLW 391

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 338 DFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
           D +++LW  +     +  +M    + ++ V +  +G ++A  +    ++LW+    K + 
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPD 455
               H   V  +SW  +S +L SGS+   +   D+R  +     L GH+ EV  + W+PD
Sbjct: 184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241
Query: 456 GEKVASGGKDRVLKLW 471
           G  +ASGG D ++ +W
Sbjct: 242 GRHLASGGNDNLVNVW 257

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 17/244 (6%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
           ++ V W  +G  +  G+    +++W+  Q K +R +  H   V SL+ ++ Y L +G+  
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 219
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
            H         E   A L  +++       AP+   L SG +D  + +W  A  +    P
Sbjct: 220 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 279
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409
               T HQ  V  V + P   +       + D+ I++WN  +G  ++    H   V  I 
Sbjct: 280 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 338
Query: 410 WSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 467
           WS   + L+SG     + L +W   T     +L GH   V ++  SPDG  VAS   D  
Sbjct: 339 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 398
Query: 468 LKLW 471
           L+LW
Sbjct: 399 LRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 338 DFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
           D +++LW  +     +  +M    + ++ V +  +G ++A  +    ++LW+    K + 
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPD 455
               H   V  +SW  +S +L SGS+   +   D+R  +     L GH+ EV  + W+PD
Sbjct: 195 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 252
Query: 456 GEKVASGGKDRVLKLW 471
           G  +ASGG D ++ +W
Sbjct: 253 GRHLASGGNDNLVNVW 268

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQISWSADSR 415
           GHQ+ V  V +SP G ++ASASFD +  +W      F  V    GH   V  ++W+    
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 416 LLLSGSKDSTLKVWDIRTQ---KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           LL + S+D ++ VW++  +   +    L  H  +V  V W P  E +AS   D  +KL+
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 113/291 (38%), Gaps = 49/291 (16%)
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGS 169
           V SV +S DG  L+ G G+  V ++D+ +QT +    GH+  V C++W+   +H L SGS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGS 193
Query: 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
           ++G +   D +        L GH   + G++W    L     +  S   D   +IWD   
Sbjct: 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-----QLASGGNDNVVQIWDARS 248
Query: 230 RKCVICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVN 285
                  + H  AV  V W      ++ T  G+ D  I  W    G  +  +   G  V 
Sbjct: 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVT 307
Query: 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345
           SL  S                  S E M                     G  D  + +W 
Sbjct: 308 SLIWSPH----------------SKEIMS------------------THGFPDNNLSIWS 333
Query: 346 PAVSKQPK-TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
            + S   K   +  H   V +   SPDG+ +++A+ D+++K W    G  V
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 102/251 (40%), Gaps = 33/251 (13%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY---ALRTG 298
           V  VKW  DG  +  G  +  + +++      +R + GH   V  L+ +        R+G
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSG 196
Query: 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVSGSDDFTMFLWEPA 347
           A  H            + A  +   ++G++ E           +L SG +D  + +W+ A
Sbjct: 197 AIHH---------HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD-A 246
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGP 404
            S  PK   T H   V  V + P     +A+   + DK I  WN  TG  V         
Sbjct: 247 RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQ 305
Query: 405 VYQISWSADSRLLLS--GSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVA 460
           V  + WS  S+ ++S  G  D+ L +W   +  L +  D+P H   V     SPDG  ++
Sbjct: 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILS 365
Query: 461 SGGKDRVLKLW 471
           +   D  LK W
Sbjct: 366 TAASDENLKFW 376

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 128/333 (38%), Gaps = 55/333 (16%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN---TQTPM--FKCTGHKNWVLCIAWSAD 161
           H E V +V  S   R + +G G   V++WD++    ++P+    C    N++       D
Sbjct: 50  HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 162 GKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L+ G +A  L  WD     P     L+        ++  P       +   S   DG
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDG 163
Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG 279
           +  +WD+  +  V    GHT   +C+    DG  ++TG  D T++ W+  +G+ +++   
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--- 220
Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
             H   S   S  Y   TG +   G + S+ E +                          
Sbjct: 221 --HDFTSQIFSLGYC-PTGEWLAVGMESSNVEVLH------------------------- 252
Query: 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399
                   V+K  K ++  H+  V  + F+  G+W  S   D  +  W    G   ++F+
Sbjct: 253 --------VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQ 302
Query: 400 G-HVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431
                 V     S D + +++GS D    V+++
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 370 PDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427
           PDG  +       ++ +W+    T +  A         Y ++ S DS++  S   D  + 
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           VWD+  Q L +   GH D    +D S DG K+ +GG D  ++ W
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 11/212 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL- 165
           H + V +V+    G Q  SGS D  +++WDL  Q  +     H   V C+A S     + 
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-TGISWEPVHLNAPCRRFVSASKDGDARI 224
           +S S+   +  WD +  KP+         ++ T ++W P         FV   ++G   +
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSL 241
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG--SQDCTIKVWETTQGKLIRELKGHGH 282
            D     CV+  + H+  VT + +    V +    S+DC++ V +++  +L R  + H  
Sbjct: 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRD 300
Query: 283 WVNSLALS--TEYALRTGAFDHTGKQYSSPEE 312
           +V     S      L T  +DH    +  P E
Sbjct: 301 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQ---D 439
           I++ N  T + +  + GH   + ++ +   D  LLLS SKD  L++W+I+T  L      
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           + GH DEV + D+   GEK+ S G D  LKLW
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLSGSKDSTLKVWDIRTQKLKQ---D 439
           I++ N  T + +  + GH   + ++ +   D  LLLS SKD  L++W+I+T  L      
Sbjct: 92  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           + GH DEV + D+   GEK+ S G D  LKLW
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLSGSKDSTLKVWDIRTQKLKQ---D 439
           I++ N  T + +  + GH   + ++ +   D  LLLS SKD  L++W+I+T  L      
Sbjct: 96  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           + GH DEV + D+   GEK+ S G D  LKLW
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLSGSKDSTLKVWDIRTQKLKQ---D 439
           I++ N  T + +  + GH   + ++ +   D  LLLS SKD  L++W+I+T  L      
Sbjct: 96  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           + GH DEV + D+   GEK+ S G D  LKLW
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 20/211 (9%)
Query: 77  SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
           S +  +SI  + ++  R   ++   A I GH   V  VA+S DG  LA+ S D +V +W+
Sbjct: 77  SFDSTVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Query: 137 LNTQTPMFKCTG----HKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQTGKPSGNPLSG 191
            +     ++C      H   V  + W      L S S    ++ W D          L+G
Sbjct: 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG 195
Query: 192 HKKWITGISWEP-VHLNAPCRRFVSASKDGDARIW-----DVSLRKCVICLS----GHTL 241
           H+    G  W           R  S S D   R+W     D   ++  +C +     H  
Sbjct: 196 HE----GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251
Query: 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGK 272
            V  V WG +G+I +   D  + V+E   G+
Sbjct: 252 QVYNVAWGFNGLIASVGADGVLAVYEEVDGE 282

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 22/158 (13%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRM------TGHQQLVNHVYFSPDGQWVASASFDKSIK 385
           L +GS D T+ +W    S      M       GH+  V  V +S DG ++A+ S DKS+ 
Sbjct: 73  LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW 132
Query: 386 LW----NGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK--QD 439
           +W    +G   + ++V + H   V  + W     LL S S D T+++W       +    
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV 192
Query: 440 LPGHADEVFAVDWSPDGEK------VASGGKDRVLKLW 471
           L GH   V    WS D +K      + SG  D  +++W
Sbjct: 193 LNGHEGTV----WSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLSGSKDSTLKVWDIRTQKLKQ---D 439
           I++ N  T + +  + GH   + ++ +   D  LLLS SKD  L++W+I+T  L      
Sbjct: 97  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           + GH DEV + D+   GEK+ S G D  LKLW
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 129/305 (42%), Gaps = 26/305 (8%)
Query: 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW--DVSLRKCVIC 235
           DP TG      L GH             +     +  S S+DG  R+W  D      V+ 
Sbjct: 3   DPFTGYQLSATLKGHD------QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY 56
Query: 236 LSGHTLAVTCVKWGGDGVIYTGSQDCTIK---VWETTQGKLIRELKGHGHWVNSLALSTE 292
                L   C     + +++ G +D  I    ++ T+    +  L GH   V SL+    
Sbjct: 57  TGQGFLNSVCYDSEKELLLF-GGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG 115
Query: 293 YALRTGAFDHTGKQYSSPEEMKKAALERYN------KIKGNAPERLVSGSDDFTMFLWEP 346
             + +G++D T K +   E      L+ +N      K+   +  + ++ S D T+ LW+ 
Sbjct: 116 VVI-SGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172
Query: 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406
              K  KT    H  +V H+    DG ++ S S D  IKL +  TG  +  + GH   VY
Sbjct: 173 --DKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229
Query: 407 QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 466
            I    +  ++  G +D T+++W      LKQ +   A  +++VD   +G+ +  G  D 
Sbjct: 230 CIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIV-GSSDN 287
Query: 467 VLKLW 471
           +++++
Sbjct: 288 LVRIF 292

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 125/289 (43%), Gaps = 55/289 (19%)
Query: 190 SGHKKWITGISWEPV--HLNAPCRR--FVSASKDGDARIWDVSLRKCVICLSGH-TLAVT 244
           S  + + T +S++P    +  PC +  FV    DGD+++        V+  +GH +  VT
Sbjct: 15  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV------PPVVQFTGHGSSVVT 68
Query: 245 CVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG--- 298
            VK+    G   + +G +   + VW  T  K    ++        + + +E+ +  G   
Sbjct: 69  TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE--------VNVKSEFQVLAGPIS 120
Query: 299 --AFDHTGKQYSSPEEMK------------------KAALERYNK--IKGNAPERLVSGS 336
             ++D  G++     E +                      +R N   +K + P R ++  
Sbjct: 121 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 180
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK 393
           DD ++  ++    K   +  T H+Q   V  V FSPD G++V +   D+ I  ++G +G+
Sbjct: 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240
Query: 394 FVAVFRGHVGPV----YQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438
           F+        PV    + +SW  DS+   +   D+T++VWD+ T K  Q
Sbjct: 241 FLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQ 288

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 124/289 (42%), Gaps = 55/289 (19%)
Query: 190 SGHKKWITGISWEPV--HLNAPCRR--FVSASKDGDARIWDVSLRKCVICLSGH-TLAVT 244
           S  + + T +S++P    +  PC +  FV    DGD+++        V+  +GH +  VT
Sbjct: 15  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV------PPVVQFTGHGSSVVT 68
Query: 245 CVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG--- 298
            VK+    G   + +G +   + VW  T  K    ++        + + +E+ +  G   
Sbjct: 69  TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE--------VNVKSEFQVLAGPIS 120
Query: 299 --AFDHTGKQYSSPEEMK------------------KAALERYNK--IKGNAPERLVSGS 336
             ++D  G++     E +                      +R N   +K + P R  +  
Sbjct: 121 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVG 180
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK 393
           DD ++  ++    K   +  T H+Q   V  V FSPD G++V +   D+ I  ++G +G+
Sbjct: 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240
Query: 394 FVAVFRGHVGPV----YQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438
           F+        PV    + +SW  DS+   +   D+T++VWD+ T K  Q
Sbjct: 241 FLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQ 288

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 32/252 (12%)
Query: 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ 270
            V+  ++G+ R+W+ +    +  L+ H   +  VKW  DG  +I    ++ TI +W    
Sbjct: 123 IVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTI-LWNVIS 180
Query: 271 GKLIR--ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
           G +++  ELK  G                 A +H+G      +            ++   
Sbjct: 181 GTVMQHFELKETG------------GSSINAENHSGDGSLGVD------------VEWVD 216
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            ++ V       +F+++    K P  ++ GH   ++ + F+   + + SAS D ++++W+
Sbjct: 217 DDKFVIPGPKGAIFVYQ-ITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
Query: 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448
           G  G     F GH   +   SW  D + ++S S D ++++W ++   L          +F
Sbjct: 276 GGNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334
Query: 449 AVDWSPDGEKVA 460
           A   S DG+K A
Sbjct: 335 AGRISQDGQKYA 346

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 25/188 (13%)
Query: 100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLN----------------TQTP 142
           CS  + GH + +L+V++SP     LA+ S D+ V+LWD+                 +Q  
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
               T H   V  + +++DG HL++      ++ W+   G+   N L  + K +   S +
Sbjct: 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE---NTLVNYGK-VCNNSKK 293
Query: 203 PVHLNAPC---RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
            +     C     FV         ++ V   + +  L GH   V C  +  +   +Y+GS
Sbjct: 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353
Query: 259 QDCTIKVW 266
           +DC I  W
Sbjct: 354 RDCNILAW 361

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
           S     ++TGH++ +  V ++ +G  + S S D S  +W    G+ +    GH G ++ I
Sbjct: 21  SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI 80
Query: 409 SWSADSRLLLSGSKDSTLKVWDI 431
                ++  ++GS D ++K+WD+
Sbjct: 81  DVDCFTKYCVTGSADYSIKLWDV 103

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWS--AD 161
            H E +        G++LA+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
              + +         I +  H + V    W    +                TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADS- 414
            H +L++       G+ +A+ S DK+IK++   G T K +    GH GPV+++ W+    
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 415 -RLLLSGSKDSTLKVWDIRTQKLKQDL--PGHADEVFAVDWSP 454
             +L S S D  + +W     +  Q      H+  V +V W+P
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQISW 410
            T  T H+ +++       G  +A+ S D+S+K+++   G    +A  RGH GPV+Q++W
Sbjct: 6   NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAW 65
Query: 411 S--ADSRLLLSGSKDSTLKVW--DIRTQKLKQDLPGHADEVFAVDWSPD--GEKVASGGK 464
           +      +L S S D  + +W  +  T +   +  GH   V +V W+P   G  +A G  
Sbjct: 66  AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS 125
Query: 465 DRVLKL 470
           D  + L
Sbjct: 126 DGAISL 131

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 332 LVSGSDDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSI 384
           + SGS+D T+ +WE          ++P   + GH + V  V + P  Q V  SA  D  I
Sbjct: 97  IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 385 KLWNGTTGKFVAVFRGHVGP--VYQISWSADSRLLLSGSKDSTLKVWDIR--TQKLKQDL 440
            +W+  TG  V      V P  +Y + WS D  L+ +  +D  ++V + R  T   ++D 
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR 216
Query: 441 PGHADEVFAVDWSPDGEKVASG---GKDRVLKLW 471
           P          +  +G+ + +G     +R + LW
Sbjct: 217 PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G++LA+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 9   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 69  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 125
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
              + +         I +  H + V    W    +                TG  D  +K
Sbjct: 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 186 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADS- 414
            H +L++       G+ +A+ S DK+IK++   G T K +    GH GPV+++ W+    
Sbjct: 9   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 415 -RLLLSGSKDSTLKVWDIRTQKLKQDL--PGHADEVFAVDWSP 454
             +L S S D  + +W     +  Q      H+  V +V W+P
Sbjct: 69  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 111

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 13/219 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-- 164
           H + V +++   DG Q  SG  D +V++WDL+ +  +     H + V C+A +  GK   
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA-ACPGKDTI 196
Query: 165 LVSGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
            +S  + G +  WD +  KP+            T ++W P   +     F    + G+  
Sbjct: 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVS 252
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
           + ++         + H+  +T + +       + + S+DCT+ V +    ++ R+L  H 
Sbjct: 253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HR 311
Query: 282 HWVNSLALS--TEYALRTGAFDHTGKQYSSPEEMKKAAL 318
            +V  +A S        T  +DH    +  P E +   L
Sbjct: 312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENL 350

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 332 LVSGSDDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSI 384
           + SGS+D T+ +WE          ++P   + GH + V  V + P  Q V  SA  D  I
Sbjct: 97  IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 385 KLWNGTTGKFVAVFRGHVGP--VYQISWSADSRLLLSGSKDSTLKVWDIR--TQKLKQDL 440
            +W+  TG  V      V P  +Y + WS D  L+ +  +D  ++V + R  T   ++D 
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR 216
Query: 441 PGHADEVFAVDWSPDGEKVASG---GKDRVLKLW 471
           P          +  +G+ + +G     +R + LW
Sbjct: 217 PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G+++A+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPM--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
              + +         I +  H + V    W    +                TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADS- 414
            H ++++       G+ +A+ S DK+IK++   G T K +    GH GPV+++ W+    
Sbjct: 7   AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 415 -RLLLSGSKDSTLKVWDIRTQKLKQDL--PGHADEVFAVDWSP 454
             +L S S D  + +W     +  Q      H+  V +V W+P
Sbjct: 67  GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP 109

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G++LA+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
              + +         I +  H + V    W    +                TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADS- 414
            H +L++       G+ +A+ S DK+IK++   G T K +    GH GPV+++ W+    
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 415 -RLLLSGSKDSTLKVWDIRTQKLKQDL--PGHADEVFAVDWSP 454
             +L S S D  + +W     +  Q      H+  V +V W+P
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 332 LVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
           L++GS    +  WE   S Q  PK +   H   V  V +S DG  V +AS DK+ K+W+ 
Sbjct: 57  LIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
Query: 390 TTGKFVAVFRGHVGPVYQISW--SADSRLLLSGSKDSTLKVWDIRT 433
           ++ + + + + H  PV  I W  + +   +++GS D TLK WD R+
Sbjct: 116 SSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 368 FSPD---GQWVASASFDKSIKLWN-GTTGKFVA-VFRGHVGPVYQISWSADSRLLLSGSK 422
           FSP    G ++ + S+   ++ W    +G+ +    + H GPV  + WS D   + + S 
Sbjct: 47  FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106
Query: 423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDW--SPDGEKVASGGKDRVLKLW 471
           D T K+WD+ + +  Q +  H   V  + W  +P+   V +G  D+ LK W
Sbjct: 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 82/217 (37%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G++ A+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGP--XLLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
              + +         I +  H + V    W    +                TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 306 QYSSPEEMKKAALERYNKIKGN-APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
            ++   E+ +A +    K+K   + E L+S S D  + +W       P+T + GH+  V 
Sbjct: 124 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT-LIGHRATVT 182
Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
            +     G+ V SAS D +I+LW   TG  +  F     P
Sbjct: 183 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 222

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 306 QYSSPEEMKKAALERYNKIKGN-APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
            ++   E+ +A +    K+K   + E L+S S D  + +W       P+T + GH+  V 
Sbjct: 127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT-LIGHRATVT 185
Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
            +     G+ V SAS D +I+LW   TG  +  F     P
Sbjct: 186 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 225

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 25/204 (12%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLN--TQTPMF-------KCTGHKN 151
           A  + H+ +V +V F+      LASG  +  + +WD+N  T++P         +     +
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166
Query: 152 WVLCIAWSADGKHLVSGSKAGEL-QCWDPQTGK-----PSGNPLSGHKKWITGISWEPVH 205
            V+ +AW+    H+ + + +      WD +  K        +P SG K+ ++ + W P +
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226
Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICL----SGHTLAVTCVKW--GGDGVIYTGSQ 259
                R   +   D D  I    LR     L     GH   +  + W    + ++ +  +
Sbjct: 227 ---STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 260 DCTIKVWETTQGKLIRELKGHGHW 283
           D T+ +W     + + +    G+W
Sbjct: 284 DNTVLLWNPESAEQLSQFPARGNW 307

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	473
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.74
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.69
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.62
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.59
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.58
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.54
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.52
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.45
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.42
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.41
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.39
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.39
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.35
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.31
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.29
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.27
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.24
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.23
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.23
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.23
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.2
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.18
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.14
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.12
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.08
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.08
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.06
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.05
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.92
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.9
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.89
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.87
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.81
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.81
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.8
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.8
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.77
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.76
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.74
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.68
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.64
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.62
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.59
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.57
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.56
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.55
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.53
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.52
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.5
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.44
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.44
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.43
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.38
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.34
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.34
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.28
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.26
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.19
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.18
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.99
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.97
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.97
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.94
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.9
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.76
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.76
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.74
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.74
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.6
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.56
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.55
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.55
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.5
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.42
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.31
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.31
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.29
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.25
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.17
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.15
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.08
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.06
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.93
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.92
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.89
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.89
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.88
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.74
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.64
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.63
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.6
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.39
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.18
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.84
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.77
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.71
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.65
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.64
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.52
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.42
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.41
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.34
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.17
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.72
3ott_A	758	Two-component system sensor histidine kinase; beta	94.7
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.66
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.48
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.18
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.15
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.07
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.01
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.84
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.45
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.45
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	93.39
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.39
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.36
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.28
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.22
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.79
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	90.69
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.68
3ott_A	758	Two-component system sensor histidine kinase; beta	89.92
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.36
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.07
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	88.05
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	87.88
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	87.68
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	86.9
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.51
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	84.9
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.07
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.11
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	82.93

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-51  Score=415.60  Aligned_cols=390  Identities=20%  Similarity=0.344  Sum_probs=307.0

Q ss_pred             cccEEEEEEEece--------------eEEEeecccccccccCCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCce
Q 011978           78 VEKVLSIVYQPQA--------------VFRIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTP  142 (473)
Q Consensus        78 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~  142 (473)
                      ...+..+.+.|..              ...++....+...+.||.+.|++++|+|++. .|++|+.|++|++||..+++.
T Consensus       103 ~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~  182 (611)
T 1nr0_A          103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF  182 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE
T ss_pred             CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE
Confidence            3456667776643              2233444556677899999999999999987 599999999999999998888


Q ss_pred             eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCC------CcCCcEEEEEeceeccCCCCceEEEe
Q 011978          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSA  216 (473)
Q Consensus       143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~~~~s~  216 (473)
                      ...+.+|...|.+++|+|||++|++|+.|++|++||..+++.......      +|...|.++.|+|     ++.+++++
T Consensus       183 ~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~s~  257 (611)
T 1nr0_A          183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-----DGTKIASA  257 (611)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-----TSSEEEEE
T ss_pred             eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-----CCCEEEEE
Confidence            888999999999999999999999999999999999988876543222      7999999999987     56789999


Q ss_pred             eCCCcEEEEECCCCeEEE-------------------------------------------EecCccccEEEEEecCCC-
Q 011978          217 SKDGDARIWDVSLRKCVI-------------------------------------------CLSGHTLAVTCVKWGGDG-  252 (473)
Q Consensus       217 s~dg~i~iwd~~~~~~~~-------------------------------------------~~~~h~~~v~~~~~~~~~-  252 (473)
                      +.|++|++||+.+++++.                                           .+.+|...|++++|++++ 
T Consensus       258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~  337 (611)
T 1nr0_A          258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK  337 (611)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC
Confidence            999999999998776543                                           345899999999999988 


Q ss_pred             eEEEeecCCeEEEEECCCCceeeee-eccCceEEEEEecccceeeeccccCCCcccCCHHHH------------------
Q 011978          253 VIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM------------------  313 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  313 (473)
                      .|++++.|++|++||+.+++....+ .+|...|.+++++++..+..+..+...+.+......                  
T Consensus       338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~  417 (611)
T 1nr0_A          338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL  417 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence            5899999999999999998877665 568888999988776655554443321111100000                  


Q ss_pred             ----H----------------HHHHh------hhhcc-cCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEE
Q 011978          314 ----K----------------KAALE------RYNKI-KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV  366 (473)
Q Consensus       314 ----~----------------~~~~~------~~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v  366 (473)
                          .                ...+.      ....+ .......+++++.|+++++||............+|...|+++
T Consensus       418 ~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v  497 (611)
T 1nr0_A          418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV  497 (611)
T ss_dssp             EECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEE
T ss_pred             EEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEE
Confidence                0                00000      00000 112345799999999999999764322112236789999999


Q ss_pred             EECCCCcEEEEEECCCcEEEEeCCC-CceEEE--eeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-ee-eccc
Q 011978          367 YFSPDGQWVASASFDKSIKLWNGTT-GKFVAV--FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK-LK-QDLP  441 (473)
Q Consensus       367 ~~sp~g~~lasgs~d~~v~lwd~~~-~~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~-~~-~~~~  441 (473)
                      +|+|||++||+++.|++|++||..+ ++++..  +.+|.+.|++++|+|||++||+||.|++|++||+..+. .. ..+.
T Consensus       498 ~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~  577 (611)
T 1nr0_A          498 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG  577 (611)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT
T ss_pred             EECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc
Confidence            9999999999999999999999987 555443  34599999999999999999999999999999998754 33 5677


Q ss_pred             cc-CCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978          442 GH-ADEVFAVDWSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       442 ~h-~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      +| ...|++++|+||++ |++++.|++|++|+.
T Consensus       578 ~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          578 AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             SSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             cCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence            89 89999999999998 999999999999973

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.8e-49  Score=399.55  Aligned_cols=367  Identities=20%  Similarity=0.285  Sum_probs=278.7

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce--eEE-------------------------------
Q 011978           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFK-------------------------------  145 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~--~~~-------------------------------  145 (473)
                      .....+.||.+.|++++|+|+|++||+|+.|++|+|||+.++..  ...                               
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            45567889999999999999999999999999999999864321  111                               


Q ss_pred             -------------EcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCc
Q 011978          146 -------------CTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR  211 (473)
Q Consensus       146 -------------~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~  211 (473)
                                   +.+|...|.+++|+|++. .|++|+.|++|++||..+++.. ..+.+|...|.+++|+|     ++.
T Consensus       130 ~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~-~~l~~H~~~V~~v~fsp-----dg~  203 (611)
T 1nr0_A          130 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-STFGEHTKFVHSVRYNP-----DGS  203 (611)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-EEECCCSSCEEEEEECT-----TSS
T ss_pred             EEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe-eeeccccCceEEEEECC-----CCC
Confidence                         234666677777777765 4888888899999998776543 34678999999999987     567


Q ss_pred             eEEEeeCCCcEEEEECCCCeEEEEec-------CccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeee------
Q 011978          212 RFVSASKDGDARIWDVSLRKCVICLS-------GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL------  277 (473)
Q Consensus       212 ~~~s~s~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~------  277 (473)
                      ++++++.|++|++||+.+++++..+.       +|...|.+++|++++ .|++++.|++|++||+.+++.+..+      
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~  283 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI  283 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred             EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence            89999999999999999999888874       799999999999988 5899999999999999887655433      


Q ss_pred             -------------------------------------eccCceEEEEEecccce-eeeccccCCCcccCCHHHHHHH---
Q 011978          278 -------------------------------------KGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKA---  316 (473)
Q Consensus       278 -------------------------------------~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---  316 (473)
                                                           .+|...|.+++++|+.. +..+..|...+.+.........   
T Consensus       284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~  363 (611)
T 1nr0_A          284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP  363 (611)
T ss_dssp             GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS
T ss_pred             cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecc
Confidence                                                 45777788888887653 3444444443333211000000   


Q ss_pred             --HHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe---------------------------------------ee
Q 011978          317 --ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK---------------------------------------TR  355 (473)
Q Consensus       317 --~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------------------------~~  355 (473)
                        .......+.......+++++.|+++++|+........                                       ..
T Consensus       364 ~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~  443 (611)
T 1nr0_A          364 DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT  443 (611)
T ss_dssp             CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE
T ss_pred             cCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCcee
Confidence              0000001111123467888888999999864321100                                       00


Q ss_pred             ecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce--EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       356 ~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      ...|...+.+++|+|||++||+|+.|++|++||+.++..  +.. .+|.+.|++++|||||++|++++.|++|++||+.+
T Consensus       444 ~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~  522 (611)
T 1nr0_A          444 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN  522 (611)
T ss_dssp             EEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             eeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence            011345678999999999999999999999999987654  234 67999999999999999999999999999999987


Q ss_pred             -Cceeec--ccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          434 -QKLKQD--LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       434 -~~~~~~--~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                       ++....  +.+|...|++++|+|||++||+++.|++|++|+
T Consensus       523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence             555443  345999999999999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.6e-50  Score=384.24  Aligned_cols=308  Identities=28%  Similarity=0.439  Sum_probs=272.9

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      ....+.||.++|++++|+|++.+|++|+.|++|+|||+.++.....+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            34567899999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~  258 (473)
                      .+++... .+.+|...|.++.|.|     ++..+++|+.|++|++||+.++.++..+.+|...|.++.+++++ .+++|+
T Consensus       180 ~~~~~~~-~~~~h~~~V~~v~~~p-----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s  253 (410)
T 1vyh_C          180 QGFECIR-TMHGHDHNVSSVSIMP-----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS  253 (410)
T ss_dssp             TSSCEEE-CCCCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeE-EEcCCCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence            8876543 5688999999999987     45689999999999999999999999999999999999999987 588999


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|++|++||+.+++....+..|...|.+++++++.........                                .    
T Consensus       254 ~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--------------------------------~----  297 (410)
T 1vyh_C          254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA--------------------------------T----  297 (410)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC--------------------------------C----
T ss_pred             CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh--------------------------------c----
Confidence            9999999999999999999999999999988775321100000                                0    


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEE
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL  418 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~  418 (473)
                                             ........++|.+|++|+.|++|++||+++++++..+.+|.+.|.+++|+|+|++|+
T Consensus       298 -----------------------~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~  354 (410)
T 1vyh_C          298 -----------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL  354 (410)
T ss_dssp             -----------------------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE
T ss_pred             -----------------------cccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEE
Confidence                                   000011234688999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       419 s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +|+.||+|++||+.+++....+.+|...|++++|+|++++|++|+.|++|++|.
T Consensus       355 s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          355 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             EEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            999999999999999998899999999999999999999999999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.2e-49  Score=367.59  Aligned_cols=288  Identities=25%  Similarity=0.450  Sum_probs=259.0

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      ...++.||.+.|.+++|+|++++|++|+.||+|++||+.++..+..+..|...|.+++|+|+|++|++|+.|+.+++|++
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            34567899999999999999999999999999999999999888888999999999999999999999999999999999


Q ss_pred             CCCcc---ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEE
Q 011978          180 QTGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY  255 (473)
Q Consensus       180 ~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~  255 (473)
                      .++..   ....+.+|...|.++.|.+.      ..+++++.|++|++||+.+++++..+.+|...|.+++|++++ .++
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLDD------NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEET------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECCC------CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence            87542   22346789999999998762      369999999999999999999999999999999999999987 588


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +|+.|++|++||+++++....+                                                          
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~----------------------------------------------------------  222 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTF----------------------------------------------------------  222 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEE----------------------------------------------------------
T ss_pred             EEeCCCcEEEEECCCCeeEEEE----------------------------------------------------------
Confidence            9999999999999876544322                                                          


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC--CccCEEEEEEecC
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG--HVGPVYQISWSAD  413 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~  413 (473)
                                           .+|...|.+++|+|++++|++|+.|++|++||+++++.+..+..  +...|.+++|+|+
T Consensus       223 ---------------------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          223 ---------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             ---------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             ---------------------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence                                 24556789999999999999999999999999999988777653  3457999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       414 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |++|++|+.||.|++||+.+++....+.+|...|.+++|+|||++|+||+.|++|+||+
T Consensus       282 g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999999999999999988889999999999999999999999999999999995

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-48  Score=362.04  Aligned_cols=286  Identities=24%  Similarity=0.432  Sum_probs=256.4

Q ss_pred             ccccCCcccEEEEEECCC----CCeEEEEeCCCeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978          102 ATIAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~----~~~lat~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~  175 (473)
                      ..+.+|.+.|++++|+|+    +.+|++|+.|++|+|||+.++..  ...+.+|...|.+++|++++..+++++.|++|+
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~  105 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR  105 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            456789999999999985    56899999999999999987653  346789999999999999999999999999999


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eE
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l  254 (473)
                      +||+.+++... .+..|...+..+.|+|     ++.++++++.|+.+++||+.+++....+..|...|.+++|++++ .|
T Consensus       106 lWd~~~~~~~~-~~~~~~~~~~~~~~sp-----dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          106 LWDLENGKQIK-SIDAGPVDAWTLAFSP-----DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             EEETTTTEEEE-EEECCTTCCCCEEECT-----TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             EEECCCCCEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence            99999887654 3456777788888876     56799999999999999999999999999999999999999988 58


Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      ++|+.|+.|++||+++++.+..+.                                                        
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~~~--------------------------------------------------------  203 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHTLE--------------------------------------------------------  203 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEEC--------------------------------------------------------
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEc--------------------------------------------------------
Confidence            899999999999998876544332                                                        


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS  414 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g  414 (473)
                                             +|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|.+.|.+++|+|++
T Consensus       204 -----------------------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  260 (321)
T 3ow8_A          204 -----------------------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD  260 (321)
T ss_dssp             -----------------------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             -----------------------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence                                   345568899999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          415 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++|++++.|++|++||+.+++.+.++.+|.+.|++++|+|++++|++++.|++|++|+
T Consensus       261 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.9e-48  Score=385.71  Aligned_cols=325  Identities=37%  Similarity=0.644  Sum_probs=291.3

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (473)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw  177 (473)
                      .++...+.+|...|.+++|+|+++.|++++.|+.|++||.. ++....+.+|...|.+++|+|+++.|++++.|+.|++|
T Consensus       252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w  330 (577)
T 2ymu_A          252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW  330 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34556778999999999999999999999999999999975 45566788999999999999999999999999999999


Q ss_pred             eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEE
Q 011978          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT  256 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s  256 (473)
                      |......  ..+.+|...+.++.|+|     ++..+++++.|+.+++||. +++.+..+.+|...|.+++|++++ .|++
T Consensus       331 ~~~~~~~--~~~~~~~~~v~~~~~s~-----~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  402 (577)
T 2ymu_A          331 NRNGQHL--QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS  402 (577)
T ss_dssp             ETTSCEE--EEECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             eCCCCee--EEEeCCCCCEEEEEECC-----CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence            9875543  24678899999999877     5678999999999999995 567788889999999999999988 5889


Q ss_pred             eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      ++.|+.|++||. +++.+..+.+|...|.+++++|+                                    ...+++++
T Consensus       403 ~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d------------------------------------~~~l~~~~  445 (577)
T 2ymu_A          403 ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------------------------DQTIASAS  445 (577)
T ss_dssp             EETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT------------------------------------SSEEEEEE
T ss_pred             EeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC------------------------------------CCEEEEEc
Confidence            999999999995 67888889999999999998875                                    23689999


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCE
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRL  416 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~  416 (473)
                      .|+++++||..  ......+.+|...|++++|+|++++||+++.|+.|++||. +++++..+.+|.+.|++++|+|||++
T Consensus       446 ~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          446 DDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT  522 (577)
T ss_dssp             TTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred             CCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCE
Confidence            99999999963  3445677889999999999999999999999999999995 68889999999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          417 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       417 l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ||+++.||.|++||. +++.+..+.+|.+.|++++|+|||++|+|++.|++|++|+
T Consensus       523 l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          523 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999999996 5677888999999999999999999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6e-48  Score=362.13  Aligned_cols=289  Identities=26%  Similarity=0.458  Sum_probs=257.1

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      ...++.||.+.|++++|+|++++||+|+.|++|+|||..++.....+..|...|.+++|+|+|..|++|+.|+.+++|++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            34567899999999999999999999999999999999998888888889999999999999999999999999999998


Q ss_pred             CCCcc-----ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC---
Q 011978          180 QTGKP-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD---  251 (473)
Q Consensus       180 ~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---  251 (473)
                      .....     ....+.+|...|.++.|.|     +...+++++.|++|++||+.+++++..+.+|...|.++.|.++   
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g  210 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTN-----SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG  210 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred             eccccccccccceeeeccCCcEEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence            65421     2233567999999999987     4568999999999999999999999999999999999999763   


Q ss_pred             CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978          252 GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (473)
Q Consensus       252 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (473)
                      ..+++|+.|++|++||+++++.+..+                                                      
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~------------------------------------------------------  236 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSGQCVQAF------------------------------------------------------  236 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEE------------------------------------------------------
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEe------------------------------------------------------
Confidence            37999999999999999877654332                                                      


Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC--ccCEEEEE
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH--VGPVYQIS  409 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h--~~~v~~v~  409 (473)
                                               .+|...|++++|+|++.+|++|+.|++|++||+++++.+..+..+  ...+.+++
T Consensus       237 -------------------------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~  291 (354)
T 2pbi_B          237 -------------------------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD  291 (354)
T ss_dssp             -------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             -------------------------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence                                     245567899999999999999999999999999998887777643  35799999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+|+|++|++|+.|++|++||+.+++....+.+|...|++++|+|||++|++|+.|++|++|.
T Consensus       292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999999988889999999999999999999999999999999995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.1e-47  Score=352.93  Aligned_cols=286  Identities=26%  Similarity=0.390  Sum_probs=252.1

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ..++.+|.+.|.+++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+.
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            34678899999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecC-CC-eEEEe
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGG-DG-VIYTG  257 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~-~l~s~  257 (473)
                      +++... .+.+|...|.++.|+|     ++.++++|+.|++|++||++++ .....+.+|...|.+++|+| ++ .+++|
T Consensus        86 ~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           86 TGEKVV-DFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             TCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             CCcEEE-EEeCCCCcEEEEEEcC-----CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            887654 4678999999999987     4568999999999999999887 55667889999999999998 44 68999


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      +.|++|++||++++.....+                                                            
T Consensus       160 s~D~~v~iwd~~~~~~~~~~------------------------------------------------------------  179 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTL------------------------------------------------------------  179 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEE------------------------------------------------------------
T ss_pred             eCCCeEEEEECCCCCcccee------------------------------------------------------------
Confidence            99999999998765432211                                                            


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECC--CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR  415 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~  415 (473)
                                        ..+|...+..++|+|  ++++|++|+.|++|++||+++++++..+.+|...|.+++|+|+++
T Consensus       180 ------------------~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~  241 (304)
T 2ynn_A          180 ------------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP  241 (304)
T ss_dssp             ------------------ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             ------------------ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC
Confidence                              112334567778876  788999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC--EEEEEeCCCcEEe
Q 011978          416 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE--KVASGGKDRVLKL  470 (473)
Q Consensus       416 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~--~l~s~~~D~~i~~  470 (473)
                      +|++|+.||+|++||+.+++....+..|...+++++|+|++.  ++++|+.|+.+.+
T Consensus       242 ~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~  298 (304)
T 2ynn_A          242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL  298 (304)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence            999999999999999999999999999999999999999885  5788887775543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.3e-48  Score=368.87  Aligned_cols=291  Identities=25%  Similarity=0.485  Sum_probs=252.8

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      +..++.||.+.|++++|+|++++|++|+.|++|+|||+.++.....+..|...|.+++|+|+|++|++|+.|+.+++||+
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            45678899999999999999999999999999999999999988889999999999999999999999999999999998


Q ss_pred             CCCc------cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-----cCccccEEEEEe
Q 011978          180 QTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-----SGHTLAVTCVKW  248 (473)
Q Consensus       180 ~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~  248 (473)
                      .+..      .....+.+|...+.++.|.|.    ...++++|+.|++|++||+.+++++..+     .+|...|.++.|
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~  213 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPD----QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI  213 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS----SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecC----CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence            6532      123356789999998888763    2357999999999999999999988776     678899999999


Q ss_pred             cC-CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccC
Q 011978          249 GG-DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (473)
Q Consensus       249 ~~-~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (473)
                      ++ ++ .+++|+.|++|++||++...                                                      
T Consensus       214 ~~~~~~~l~sgs~D~~v~~wd~~~~~------------------------------------------------------  239 (380)
T 3iz6_a          214 NSLNANMFISGSCDTTVRLWDLRITS------------------------------------------------------  239 (380)
T ss_dssp             CSSSCCEEEEEETTSCEEEEETTTTC------------------------------------------------------
T ss_pred             ecCCCCEEEEEECCCeEEEEECCCCC------------------------------------------------------
Confidence            75 43 68889999999999976321                                                      


Q ss_pred             CCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc----
Q 011978          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV----  402 (473)
Q Consensus       327 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~----  402 (473)
                                              .....+.+|...|++++|+|++++|++|+.|++|++||+++++.+..+..+.    
T Consensus       240 ------------------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~  295 (380)
T 3iz6_a          240 ------------------------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND  295 (380)
T ss_dssp             ------------------------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred             ------------------------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc
Confidence                                    1112344677789999999999999999999999999999999888876543    


Q ss_pred             ---cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc----cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          403 ---GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL----PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       403 ---~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~----~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                         ..|++++|+|+|++|++|+.||.|++||+..++....+    .+|...|++++|+|||++|+||+.|++|++|.
T Consensus       296 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence               34899999999999999999999999999888776555    68999999999999999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6e-47  Score=352.86  Aligned_cols=283  Identities=20%  Similarity=0.249  Sum_probs=236.2

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-----------CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-----------~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~  173 (473)
                      ..|...|.+++|+|||++|++++ |+++|+||...           .........|...|.+++|+||+ .|++|+.||+
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~  104 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA  104 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence            35777899999999999999887 67788886321           01111222456789999999985 7889999999


Q ss_pred             EEEeeCCCCcccc---ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC
Q 011978          174 LQCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (473)
Q Consensus       174 i~iwd~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  250 (473)
                      |++||+.+++...   ....+|...|.+++|+|     ++.++++|+.|++|++||+.+++++..+.+|...|.+++|++
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-----dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLS-----SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence            9999999887543   23458999999999987     567999999999999999999999999999999999999998


Q ss_pred             CC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978          251 DG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (473)
Q Consensus       251 ~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
                      ++  .+++++.|++|++||+++++....+..                                                 
T Consensus       180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------------------------------------------------  210 (344)
T 4gqb_B          180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGC-------------------------------------------------  210 (344)
T ss_dssp             SCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------------------------------------
T ss_pred             CCCCceeeeccccccccccccccceeeeeec-------------------------------------------------
Confidence            76  578999999999999988776543321                                                 


Q ss_pred             CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~  407 (473)
                                                  ..|...+.+++|+| ++++|++|+.|++|++||+++++++..+.+|.+.|++
T Consensus       211 ----------------------------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~  262 (344)
T 4gqb_B          211 ----------------------------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG  262 (344)
T ss_dssp             -------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEE
T ss_pred             ----------------------------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEE
Confidence                                        01223577899998 5678999999999999999999999999999999999


Q ss_pred             EEEecCC-CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC-EEEEEeCCCcEEecc
Q 011978          408 ISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGGKDRVLKLWM  472 (473)
Q Consensus       408 v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~~w~  472 (473)
                      ++|+|++ ++||+||.|++|+|||+.+++.. .+.+|.+.|++++|+|+++ .|+|+|.|++|++|.
T Consensus       263 v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          263 LVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             EEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            9999998 58999999999999999988765 4678999999999999987 567999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-46  Score=353.59  Aligned_cols=284  Identities=21%  Similarity=0.286  Sum_probs=238.1

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeC------CCeEEEEeCCCCce----eEEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSG------DTTVRLWDLNTQTP----MFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~------d~~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i  174 (473)
                      .+|...|++++|+|||++||+|+.      |+.|++|+..++.+    .....+|...|.+++|+|+++ +++++.||+|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence            469999999999999999999997      78899999876543    233457889999999999975 6678889999


Q ss_pred             EEeeCCCCcccc---ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC
Q 011978          175 QCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD  251 (473)
Q Consensus       175 ~iwd~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  251 (473)
                      ++||+.+++...   ....+|...|.++.|+|     ++.++++++.|++|++||+.+++++..+.+|...|.+++|+++
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  192 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-----DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG  192 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence            999998876432   22457999999999987     5678999999999999999999999999999999999999876


Q ss_pred             C--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          252 G--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       252 ~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      +  .+++++.|++|++||+++++....+.                                                   
T Consensus       193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---------------------------------------------------  221 (357)
T 4g56_B          193 KDTIFLSCGEDGRILLWDTRKPKPATRID---------------------------------------------------  221 (357)
T ss_dssp             CSSCEEEEETTSCEEECCTTSSSCBCBCC---------------------------------------------------
T ss_pred             CCceeeeeccCCceEEEECCCCceeeeee---------------------------------------------------
Confidence            5  68899999999999998765433211                                                   


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v  408 (473)
                                                ...|...+.+++|+|+ +.+||+|+.|+.|++||+++++++..+.+|...|+++
T Consensus       222 --------------------------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l  275 (357)
T 4g56_B          222 --------------------------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL  275 (357)
T ss_dssp             --------------------------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred             --------------------------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence                                      1123456889999997 5789999999999999999999999999999999999


Q ss_pred             EEecCC-CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEee-CCCEEEEEeCCCcEEecc
Q 011978          409 SWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       409 ~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~~w~  472 (473)
                      +|+|++ ++||+|+.|++|+|||+++++....+ +|.+.|++++|+| |+++|+|+|.|++|++|.
T Consensus       276 ~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          276 AYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             EECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            999987 68999999999999999998887665 7999999999998 899999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.1e-46  Score=349.42  Aligned_cols=291  Identities=25%  Similarity=0.490  Sum_probs=244.0

Q ss_pred             ccccccCCcc-cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978          100 CSATIAGHTE-AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF---KCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (473)
Q Consensus       100 ~~~~~~gh~~-~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~---~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~  175 (473)
                      +..++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++....   ...+|...|.+++|+|+|++|++|+.|++++
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~   86 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC   86 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence            3456788988 99999999999999999999999999998775332   2368999999999999999999999999999


Q ss_pred             EeeCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC---eEEEEecCccccEEEEEecCC
Q 011978          176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGD  251 (473)
Q Consensus       176 iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~  251 (473)
                      +|+..++.. ....+.+|...|.++.|+|     ++.+|++++.|++|++||+..+   .++..+.+|...|.+++|+++
T Consensus        87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           87 IWKKNQDDFECVTTLEGHENEVKSVAWAP-----SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             EEEECCC-EEEEEEECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             EEEccCCCeEEEEEccCCCCCceEEEEeC-----CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence            999887642 2345789999999999987     4578999999999999999765   456778899999999999998


Q ss_pred             C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978          252 G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (473)
Q Consensus       252 ~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (473)
                      + .|++++.|++|++||.++++...                                                       
T Consensus       162 ~~~l~s~s~d~~i~~w~~~~~~~~~-------------------------------------------------------  186 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREEEDDWVC-------------------------------------------------------  186 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEE-------------------------------------------------------
T ss_pred             CCEEEEEeCCCcEEEEEecCCCEEE-------------------------------------------------------
Confidence            7 68999999999999976543211                                                       


Q ss_pred             eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC---------------ceE
Q 011978          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---------------KFV  395 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~---------------~~~  395 (473)
                                            ...+.+|...|.+++|+|+|++|++|+.|++|++||....               +++
T Consensus       187 ----------------------~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~  244 (345)
T 3fm0_A          187 ----------------------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI  244 (345)
T ss_dssp             ----------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred             ----------------------EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence                                  0123457778999999999999999999999999985321               234


Q ss_pred             EEeeC-CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce---------eecccccCCCEEEEEEeeCC-CEEEEEeC
Q 011978          396 AVFRG-HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL---------KQDLPGHADEVFAVDWSPDG-EKVASGGK  464 (473)
Q Consensus       396 ~~~~~-h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~---------~~~~~~h~~~i~~l~~s~d~-~~l~s~~~  464 (473)
                      ..+.+ |...|.+++|+|++..|++++.|+.|++|+......         .....+|...|++++|+|++ .+||||+.
T Consensus       245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~  324 (345)
T 3fm0_A          245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD  324 (345)
T ss_dssp             EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET
T ss_pred             EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC
Confidence            45555 889999999999999999999999999999875421         12346899999999999998 49999999


Q ss_pred             CCcEEecc
Q 011978          465 DRVLKLWM  472 (473)
Q Consensus       465 D~~i~~w~  472 (473)
                      |++|++|+
T Consensus       325 Dg~v~~W~  332 (345)
T 3fm0_A          325 DGEVAFWK  332 (345)
T ss_dssp             TSCEEEEE
T ss_pred             CCcEEEEE
Confidence            99999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.7e-45  Score=367.69  Aligned_cols=324  Identities=36%  Similarity=0.622  Sum_probs=288.2

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      +....+.+|...|.+++|+|++++|++++.|+.|++||.. ++.+..+.+|...|.+++|+|+++.|++++.|+.|++||
T Consensus       212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~  290 (577)
T 2ymu_A          212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN  290 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence            4456678999999999999999999999999999999965 456677889999999999999999999999999999999


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEe
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~  257 (473)
                      ... +. ...+.+|...|.++.|+|     ++..+++++.|+++++||... ..+..+.+|...|.+++|++++ .++++
T Consensus       291 ~~~-~~-~~~~~~h~~~v~~~~~~~-----~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~  362 (577)
T 2ymu_A          291 RNG-QL-LQTLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASA  362 (577)
T ss_dssp             TTS-CE-EEEECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCC-cE-EEEEecCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            753 32 235678999999999877     557899999999999999765 4556788999999999999988 58899


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      +.|+.+++||. +++.+..+..|...|.+++++++.                                    ..+++++.
T Consensus       363 ~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg------------------------------------~~l~~~~~  405 (577)
T 2ymu_A          363 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG------------------------------------QTIASASD  405 (577)
T ss_dssp             ETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS------------------------------------SCEEEEET
T ss_pred             eCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC------------------------------------CEEEEEeC
Confidence            99999999995 678888899999999999988752                                    35899999


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL  417 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l  417 (473)
                      |+.+++||..  ......+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+||+++|
T Consensus       406 d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~l  482 (577)
T 2ymu_A          406 DKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI  482 (577)
T ss_dssp             TSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEE
T ss_pred             CCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            9999999953  3445667889999999999999999999999999999996 577888999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++++.|++|++||. +++....+.+|...|++++|+|||++|++++.|+.|++|+
T Consensus       483 as~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          483 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence            99999999999995 5677888999999999999999999999999999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-46  Score=358.21  Aligned_cols=322  Identities=22%  Similarity=0.353  Sum_probs=282.2

Q ss_pred             CCcccEEEEEECCCCC-eEEEEeCCCeEEEEeC----CCCc------eeEEEcC----------CCCCEEEEEECCCCCe
Q 011978          106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL----NTQT------PMFKCTG----------HKNWVLCIAWSADGKH  164 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~----~~~~------~~~~~~~----------~~~~v~~l~~s~dg~~  164 (473)
                      .|.+.|.+++|+|+++ +||+|+.|+.|++||+    .++.      ....+..          |...|.+++|+|++++
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            3568999999999999 9999999999999999    8777      3444443          6779999999999999


Q ss_pred             EEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcccc--
Q 011978          165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA--  242 (473)
Q Consensus       165 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--  242 (473)
                      |++++.||.|++|| .+++.. ..+.+|...|.++.|.|     ++..+++++.|+.+++||+.+++.+..+..+...  
T Consensus       123 l~~~~~dg~i~i~~-~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          123 IVTGVENGELRLWN-KTGALL-NVLNFHRAPIVSVKWNK-----DGTHIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             EEEEETTSCEEEEE-TTSCEE-EEECCCCSCEEEEEECT-----TSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             EEEEeCCCeEEEEe-CCCCee-eeccCCCccEEEEEECC-----CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence            99999999999999 444433 34678999999999987     4568999999999999999999999888887766  


Q ss_pred             -------------EEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCC
Q 011978          243 -------------VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (473)
Q Consensus       243 -------------v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  309 (473)
                                   +.++.|++++.+++++.|+.|++||+.+++.+..+..|...|.+++++++                 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-----------------  258 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-----------------  258 (425)
T ss_dssp             ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-----------------
T ss_pred             ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-----------------
Confidence                         88999999999999999999999999999999889999999999988765                 


Q ss_pred             HHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (473)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~  389 (473)
                                         ...+++++.|+.+++||..... ....+.+|...+.+++|+|++ ++++++.|+.|++||+
T Consensus       259 -------------------~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~  317 (425)
T 1r5m_A          259 -------------------NKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL  317 (425)
T ss_dssp             -------------------TTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred             -------------------CCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence                               2368999999999999987543 345567788999999999999 9999999999999999


Q ss_pred             CCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--------------------eeecccccCC--CE
Q 011978          390 TTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK--------------------LKQDLPGHAD--EV  447 (473)
Q Consensus       390 ~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~--------------------~~~~~~~h~~--~i  447 (473)
                      .+++.+..+..|...|.+++|+|++++|++++.||.|++||+.+++                    .+..+.+|..  .|
T Consensus       318 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  397 (425)
T 1r5m_A          318 KQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI  397 (425)
T ss_dssp             TTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred             CCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence            9999999999999999999999999999999999999999999887                    7788888976  99


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          448 FAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       448 ~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++++|+|++++|++++.|+.|++|.
T Consensus       398 ~~~~~s~~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          398 FDLSWNCAGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             EEEEECTTSSEEEEEESSSCCEEEE
T ss_pred             EEEEccCCCceEEEEecCceEEEEe
Confidence            9999999999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-45  Score=340.99  Aligned_cols=284  Identities=28%  Similarity=0.465  Sum_probs=243.5

Q ss_pred             cccccCCcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCC-----ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978          101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i  174 (473)
                      ..++.||.+.|.+++|+|++ ++|++|+.|++|++||+.+.     .++..+.+|...|.+++|+|+|++|++|+.|++|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            34678999999999999975 89999999999999998642     3456788999999999999999999999999999


Q ss_pred             EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--
Q 011978          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--  252 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--  252 (473)
                      ++||+.+++... .+.+|...|.++.|+|     ++..+++++.|++|++||++ +.++..+.+|...|.++.|.+..  
T Consensus        90 ~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           90 RLWDVATGETYQ-RFVGHKSDVMSVDIDK-----KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             EEEETTTTEEEE-EEECCSSCEEEEEECT-----TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred             EEEECCCCCeeE-EEccCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence            999999987643 4678999999999887     45689999999999999996 56777888999999999998742  


Q ss_pred             -----eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCC
Q 011978          253 -----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (473)
Q Consensus       253 -----~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (473)
                           .+++++.|++|++||+++++...                                                    
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~----------------------------------------------------  190 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEA----------------------------------------------------  190 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEE----------------------------------------------------
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhhe----------------------------------------------------
Confidence                 57888888999999887654322                                                    


Q ss_pred             CCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE
Q 011978          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (473)
Q Consensus       328 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~  407 (473)
                                                 .+.+|...|.+++|+|+|++|++|+.|+.|++||+.+++.+..+..+ ..|.+
T Consensus       191 ---------------------------~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~  242 (319)
T 3frx_A          191 ---------------------------DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS  242 (319)
T ss_dssp             ---------------------------EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEE
T ss_pred             ---------------------------eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEE
Confidence                                       23356678999999999999999999999999999999999888755 68999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCCceeeccc--------ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          408 ISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP--------GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       408 v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++|+|++.+|++++.+ .+++|++..+.....+.        .|...+.+++|+|||++|++|+.|++|++|+
T Consensus       243 ~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          243 LAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             EEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            9999999999988765 59999998766544332        3556799999999999999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-45  Score=339.57  Aligned_cols=290  Identities=34%  Similarity=0.633  Sum_probs=257.1

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      ....++.||.+.|.+++|+|++++|++|+.|+.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence            34556789999999999999999999999999999999999888888899999999999999999999999999999999


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEe
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~  257 (473)
                      +++++... .+.+|...|.++.|+|     ++..+++++.|+.|++||+++++++..+.+|...|.+++|++++ .++++
T Consensus        94 ~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A           94 VSSGKCLK-TLKGHSNYVFCCNFNP-----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             TTTCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEE-EEcCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            99887543 4678999999999987     45689999999999999999999999999999999999999987 68899


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      +.|+.|++||+++++.+..+.                                                           
T Consensus       168 ~~d~~i~~wd~~~~~~~~~~~-----------------------------------------------------------  188 (312)
T 4ery_A          168 SYDGLCRIWDTASGQCLKTLI-----------------------------------------------------------  188 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC-----------------------------------------------------------
T ss_pred             eCCCcEEEEECCCCceeeEEe-----------------------------------------------------------
Confidence            999999999998776543221                                                           


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE--EEEe-cCC
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ--ISWS-ADS  414 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~--v~~s-p~g  414 (473)
                                         ..+...+..++|+|++++|++++.|+.|++||+++++++..+.+|...+..  ..|+ +++
T Consensus       189 -------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          189 -------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             -------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred             -------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence                               012335778999999999999999999999999999999999988765332  3344 678


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe--CCCcEEecc
Q 011978          415 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLWM  472 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~~w~  472 (473)
                      .+|++|+.||.|++||+.+++....+.+|.+.|.+++|+|+++.|++++  .|++|++|.
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            9999999999999999999999999999999999999999999999997  699999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.6e-44  Score=361.36  Aligned_cols=368  Identities=18%  Similarity=0.307  Sum_probs=302.1

Q ss_pred             EeecccccccccCCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCC---CEEEEEECCC-CCeEEEE
Q 011978           94 IRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSAD-GKHLVSG  168 (473)
Q Consensus        94 ~~~~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~~~~~~~~~---~v~~l~~s~d-g~~l~s~  168 (473)
                      ++........+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|+++
T Consensus       146 ~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (615)
T 1pgu_A          146 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV  225 (615)
T ss_dssp             ETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred             EEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence            3344556677889999999999999998 799999999999999999998888999999   9999999999 9999999


Q ss_pred             ecCCeEEEeeCCCCccccccCC---CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc----cc
Q 011978          169 SKAGELQCWDPQTGKPSGNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH----TL  241 (473)
Q Consensus       169 ~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h----~~  241 (473)
                      +.||.|++||+.+++.......   +|...|.++.|.      ++..+++++.|+.|++||+.+++.+..+..+    ..
T Consensus       226 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  299 (615)
T 1pgu_A          226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL------DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN  299 (615)
T ss_dssp             ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES------SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred             eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc------CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence            9999999999998886654435   899999999986      3468999999999999999999998888766    46


Q ss_pred             cEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH-----------
Q 011978          242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP-----------  310 (473)
Q Consensus       242 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  310 (473)
                      .+.++.|..+..+++++.|+.|++||+.+++.+..+.+|...|.++++ ++  +..+..+.....+...           
T Consensus       300 ~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~~~~~~~~~~~v~  376 (615)
T 1pgu_A          300 QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP--LISGSYDGRIMEWSSSSMHQDHSNLIV  376 (615)
T ss_dssp             CEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT--TEEEETTSCEEETTTTEEECCCCSCEE
T ss_pred             ceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEchhhcCcccCceE
Confidence            788888875668999999999999999999999999889888888888 55  3333322221111100           


Q ss_pred             ------HHHH-----HHHHhhhh---------------------------------------------------cccCCC
Q 011978          311 ------EEMK-----KAALERYN---------------------------------------------------KIKGNA  328 (473)
Q Consensus       311 ------~~~~-----~~~~~~~~---------------------------------------------------~~~~~~  328 (473)
                            ....     ...+..+.                                                   .+.-. 
T Consensus       377 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  455 (615)
T 1pgu_A          377 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS-  455 (615)
T ss_dssp             EEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC-
T ss_pred             EEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc-
Confidence                  0000     00000000                                                   00000 


Q ss_pred             CceEEEecC-CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC-CccCEE
Q 011978          329 PERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVY  406 (473)
Q Consensus       329 ~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~-h~~~v~  406 (473)
                      ...+++++. |+.+++||..........+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+ |...|+
T Consensus       456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~  535 (615)
T 1pgu_A          456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN  535 (615)
T ss_dssp             SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred             CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCcee
Confidence            456778888 899999987653221145667889999999999999999999999999999999999999988 999999


Q ss_pred             EEEEec----------CCCEEEEEeCCCcEEEEECCCC-ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          407 QISWSA----------DSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       407 ~v~~sp----------~g~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +++|+|          ++++|++++.||.|++||+.++ +....+.+|...|++++|+||++ |++++.|+.|++|+
T Consensus       536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~  611 (615)
T 1pgu_A          536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN  611 (615)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence            999999          9999999999999999999987 77888999999999999999999 99999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-44  Score=344.80  Aligned_cols=287  Identities=31%  Similarity=0.523  Sum_probs=245.9

Q ss_pred             CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCC------------------CCEEEEEECCCCCeEEE
Q 011978          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK------------------NWVLCIAWSADGKHLVS  167 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~------------------~~v~~l~~s~dg~~l~s  167 (473)
                      +|.+.|.+++|+|||++||+|+ ++++++|++.++..+..+..|.                  ..|.+++|+|||++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999976 7899999999888776665443                  24999999999999999


Q ss_pred             EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 011978          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (473)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  247 (473)
                      |+.|+.|++||+.+++... .+.+|...|.++.|.|     ++.++++++.|++|++||++++++...+. +...+.+++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~p-----~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~  213 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFP-----SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA  213 (393)
T ss_dssp             EETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred             EcCCCeEEEEECCCCcEEE-EEccCCCCEEEEEEcC-----CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence            9999999999999886543 4788999999999987     45689999999999999999999887775 456789999


Q ss_pred             ecC-CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978          248 WGG-DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (473)
Q Consensus       248 ~~~-~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
                      |++ ++ .+++|+.|+.|++||.++++.+..+...                                             
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~---------------------------------------------  248 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE---------------------------------------------  248 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------------------
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc---------------------------------------------
Confidence            997 65 6889999999999999887665433210                                             


Q ss_pred             CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC------------c
Q 011978          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG------------K  393 (473)
Q Consensus       326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~------------~  393 (473)
                                                 .....+|...|.+++|+|+|++|++|+.|++|++||+++.            .
T Consensus       249 ---------------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~  301 (393)
T 1erj_A          249 ---------------------------NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  301 (393)
T ss_dssp             -------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred             ---------------------------ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence                                       0112357788999999999999999999999999998753            4


Q ss_pred             eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEee------CCCEEEEEeCCCc
Q 011978          394 FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP------DGEKVASGGKDRV  467 (473)
Q Consensus       394 ~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~------d~~~l~s~~~D~~  467 (473)
                      +...+.+|...|.+++|+|++.+|++|+.|+.|++||+.+++....+.+|...|.+++|++      ++++|+||+.|++
T Consensus       302 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence            5567889999999999999999999999999999999999999999999999999999986      6889999999999


Q ss_pred             EEecc
Q 011978          468 LKLWM  472 (473)
Q Consensus       468 i~~w~  472 (473)
                      |+||+
T Consensus       382 i~iW~  386 (393)
T 1erj_A          382 ARIWK  386 (393)
T ss_dssp             EEEEE
T ss_pred             EEECc
Confidence            99996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-47  Score=362.61  Aligned_cols=327  Identities=16%  Similarity=0.279  Sum_probs=278.6

Q ss_pred             CcccEEEEEECCCCC-eEEEE----------eCCCeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978          107 HTEAVLSVAFSPDGR-QLASG----------SGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (473)
Q Consensus       107 h~~~V~~~~~sp~~~-~lat~----------s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~  173 (473)
                      +...|.+++|+|+++ +||+|          +.|+.|+|||+.++..  ......|...|.+++|+|++++|++++.||.
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence            334678899999997 89999          8999999999987652  2222368889999999999999999999999


Q ss_pred             EEEeeCCC---CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe------EEEE---ecCccc
Q 011978          174 LQCWDPQT---GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK------CVIC---LSGHTL  241 (473)
Q Consensus       174 i~iwd~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~------~~~~---~~~h~~  241 (473)
                      |++||+.+   +......+.+|...|.++.|+|.    ....+++++.|+.|++||+.+++      ....   ..+|..
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  166 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAK----QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD  166 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS----STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCC----CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence            99999987   23234457889999999999873    24689999999999999998876      3332   367899


Q ss_pred             cEEEEEecCC-C-eEEEeecCCeEEEEECCCCceeeeeecc------CceEEEEEecccceeeeccccCCCcccCCHHHH
Q 011978          242 AVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (473)
Q Consensus       242 ~v~~~~~~~~-~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (473)
                      .|.+++|+++ + .+++++.|+.|++||+++++.+..+..+      ...+.+++++++.                    
T Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------  226 (416)
T 2pm9_A          167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN--------------------  226 (416)
T ss_dssp             CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC--------------------
T ss_pred             CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC--------------------
Confidence            9999999987 3 6889999999999999999988888776      6788999887652                    


Q ss_pred             HHHHHhhhhcccCCCCceEEEecCCc---eEEEEeCCCCCCCeeeec-CcccceeEEEECC-CCcEEEEEECCCcEEEEe
Q 011978          314 KKAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSP-DGQWVASASFDKSIKLWN  388 (473)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~-~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd  388 (473)
                                     ...+++++.|+   .+++||+.....+...+. +|...|.+++|+| ++++|++++.|+.|++||
T Consensus       227 ---------------~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd  291 (416)
T 2pm9_A          227 ---------------STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN  291 (416)
T ss_dssp             ---------------TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred             ---------------CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence                           23688999998   999999987666666677 8999999999999 999999999999999999


Q ss_pred             CCCCceEEEeeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeeccc--------------------------
Q 011978          389 GTTGKFVAVFRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLP--------------------------  441 (473)
Q Consensus       389 ~~~~~~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------------------------  441 (473)
                      +.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++||+...+......                          
T Consensus       292 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (416)
T 2pm9_A          292 PESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKP  371 (416)
T ss_dssp             SSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCC
T ss_pred             CCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccc
Confidence            99999999999999999999999999 899999999999999998765432221                          


Q ss_pred             ---------ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          442 ---------GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       442 ---------~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                               .|...+.+++|+|||++|++++.|++|+||+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~  411 (416)
T 2pm9_A          372 SVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN  411 (416)
T ss_dssp             CSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred             ccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence                     1567788999999999999999999999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.1e-44  Score=335.79  Aligned_cols=283  Identities=25%  Similarity=0.457  Sum_probs=230.0

Q ss_pred             cccccCCcccEEEEEE-----CC-CCCeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCEEEEEECCCCCeEEE
Q 011978          101 SATIAGHTEAVLSVAF-----SP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLVS  167 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~-----sp-~~~~lat~s~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~dg~~l~s  167 (473)
                      ...+.||.+.|++++|     ++ ++++|++|+.|++|++||+.+.       .+...+.+|...|.+++|+|++.+|++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence            4567899999999999     77 8999999999999999998753       345667899999999999999999999


Q ss_pred             EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec---CccccEE
Q 011978          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVT  244 (473)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~  244 (473)
                      |+.|++|++||+++++... .+.+|...|.++.|+|     ++.++++++.|++|++||+... +.....   +|...|.
T Consensus        94 ~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp-----~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYK-RFVGHQSEVYSVAFSP-----DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS  166 (343)
T ss_dssp             EETTSEEEEEETTSSCEEE-EEECCCSCEEEEEECS-----STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred             EcCCCcEEEEECCCCcEEE-EEcCCCCcEEEEEECC-----CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence            9999999999999887543 4678999999999987     4568999999999999999843 333333   7888999


Q ss_pred             EEEecCCC-----------eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHH
Q 011978          245 CVKWGGDG-----------VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (473)
Q Consensus       245 ~~~~~~~~-----------~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (473)
                      +++|++++           .+++++.|++|++||..                                            
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--------------------------------------------  202 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--------------------------------------------  202 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--------------------------------------------
T ss_pred             eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--------------------------------------------
Confidence            99998864           34555555555555521                                            


Q ss_pred             HHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC-C
Q 011978          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-G  392 (473)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~-~  392 (473)
                                                          ......+.+|...|.+++|+|+|++|++|+.|+.|++||+.. .
T Consensus       203 ------------------------------------~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          203 ------------------------------------FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             ------------------------------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred             ------------------------------------CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence                                                112223456778899999999999999999999999999954 4


Q ss_pred             ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--ccc-----------ccCCCEEEEEEeeCCCEE
Q 011978          393 KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLP-----------GHADEVFAVDWSPDGEKV  459 (473)
Q Consensus       393 ~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~--~~~-----------~h~~~i~~l~~s~d~~~l  459 (473)
                      .....+. +...|.+++|+|++++++++ .|+.|++||+.+++...  .+.           +|...|++++|+|+|++|
T Consensus       247 ~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  324 (343)
T 2xzm_R          247 YPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL  324 (343)
T ss_dssp             SCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred             ccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence            4444443 45679999999999888755 57889999998765432  332           688899999999999999


Q ss_pred             EEEeCCCcEEecc
Q 011978          460 ASGGKDRVLKLWM  472 (473)
Q Consensus       460 ~s~~~D~~i~~w~  472 (473)
                      ++|+.|++|++|.
T Consensus       325 ~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          325 FAGFTDGVIRTFS  337 (343)
T ss_dssp             EEEETTSEEEEEE
T ss_pred             EEecCCceEEEEE
Confidence            9999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-44  Score=335.22  Aligned_cols=288  Identities=22%  Similarity=0.401  Sum_probs=230.2

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC--ceeEEE-cC-CCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKC-TG-HKNWVLCIAWSADGKHLVSGSKAGELQ  175 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~--~~~~~~-~~-~~~~v~~l~~s~dg~~l~s~~~dg~i~  175 (473)
                      +...+.+|.+.|.+++|+|+  +||+|+.|++|++||+.++  .....+ .+ |...|.+++|+|++++|++|+.|++|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            34567899999999999998  9999999999999999875  333444 34 999999999999999999999999999


Q ss_pred             EeeCCCCc------cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC----CeEEEEecCccccEEE
Q 011978          176 CWDPQTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----RKCVICLSGHTLAVTC  245 (473)
Q Consensus       176 iwd~~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~----~~~~~~~~~h~~~v~~  245 (473)
                      +||.....      .....+.+|...|.++.|+|     ++.++++|+.|++|++||+..    .+++..+.+|...|.+
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~  158 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-----DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH  158 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECT-----TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECC-----CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence            99985422      12234678999999999987     457899999999999999943    3577788999999999


Q ss_pred             EEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcc
Q 011978          246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (473)
Q Consensus       246 ~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (473)
                      ++|++++ .|++|+.|++|++||..++...                                                  
T Consensus       159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~--------------------------------------------------  188 (330)
T 2hes_X          159 VIWHPSEALLASSSYDDTVRIWKDYDDDWE--------------------------------------------------  188 (330)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEETTEEE--------------------------------------------------
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCCee--------------------------------------------------
Confidence            9999987 6889999999999997543110                                                  


Q ss_pred             cCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC--CcEEEEEECCCcEEEEeCCCC--------ce
Q 011978          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTG--------KF  394 (473)
Q Consensus       325 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~--g~~lasgs~d~~v~lwd~~~~--------~~  394 (473)
                                                 ....+.+|...|.+++|+|+  +.+|++|+.|++|++||+..+        .+
T Consensus       189 ---------------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~  241 (330)
T 2hes_X          189 ---------------------------CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC  241 (330)
T ss_dssp             ---------------------------EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred             ---------------------------EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence                                       01123467778899999998  779999999999999998654        34


Q ss_pred             EEEeeC-CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--ee-ecccccCC-CEEEEEEee--CCCEEEEEeCCCc
Q 011978          395 VAVFRG-HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK--LK-QDLPGHAD-EVFAVDWSP--DGEKVASGGKDRV  467 (473)
Q Consensus       395 ~~~~~~-h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~--~~-~~~~~h~~-~i~~l~~s~--d~~~l~s~~~D~~  467 (473)
                      ...+.+ |...|.+++|++++ +|++++.||+|++||..+++  .. ..+.+|.. .|++++|+|  ++++|++|+.|++
T Consensus       242 ~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~  320 (330)
T 2hes_X          242 EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI  320 (330)
T ss_dssp             EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred             eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence            455555 99999999999765 89999999999999998763  22 33467877 899999999  7899999999999


Q ss_pred             EEecc
Q 011978          468 LKLWM  472 (473)
Q Consensus       468 i~~w~  472 (473)
                      |+||.
T Consensus       321 v~~W~  325 (330)
T 2hes_X          321 VNFWS  325 (330)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-43  Score=368.48  Aligned_cols=360  Identities=14%  Similarity=0.144  Sum_probs=278.3

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~  184 (473)
                      ..|...|.+++|+| |++|++++.|++|++||+.+++.+..+. |...|.+++|+|++++|++|+.||.|++||+.+++.
T Consensus        55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred             cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            35888999999999 8899999999999999999988877775 668899999999999999999999999999988764


Q ss_pred             cc----------ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc---------------
Q 011978          185 SG----------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH---------------  239 (473)
Q Consensus       185 ~~----------~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h---------------  239 (473)
                      ..          ....+|...|.+++|+|..    ...+++|+.|+.| +||+++++++..+.+|               
T Consensus       133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~----~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~  207 (902)
T 2oaj_A          133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRD----IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTN  207 (902)
T ss_dssp             EEEEECCHHHHHTCSSSCCCCCCEEEEETTE----EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTT
T ss_pred             ccceeccccccccccccCCCCeEEEEEccCC----CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccc
Confidence            21          2357899999999999832    3578999999999 9999999998888766               


Q ss_pred             ---cccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeee--e---ec-------------cCceEEEEEecc----c-
Q 011978          240 ---TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE--L---KG-------------HGHWVNSLALST----E-  292 (473)
Q Consensus       240 ---~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~--~---~~-------------~~~~v~~~~~~~----~-  292 (473)
                         ...|.+++|++++ .|++|+.|++|++||+++++.+..  +   ..             +...|.++++.+    + 
T Consensus       208 ~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~  287 (902)
T 2oaj_A          208 EKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY  287 (902)
T ss_dssp             SCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE
T ss_pred             cccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC
Confidence               4679999999998 589999999999999999887653  2   11             234688888742    2 


Q ss_pred             -ceeeeccccCC-----Ccc-----------------------------cC----------------CHHH---------
Q 011978          293 -YALRTGAFDHT-----GKQ-----------------------------YS----------------SPEE---------  312 (473)
Q Consensus       293 -~~~~~~~~~~~-----~~~-----------------------------~~----------------~~~~---------  312 (473)
                       ..+..+..+..     ...                             +.                .+..         
T Consensus       288 ~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l  367 (902)
T 2oaj_A          288 TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLI  367 (902)
T ss_dssp             EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEE
T ss_pred             CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeE
Confidence             12222211100     000                             00                0000         


Q ss_pred             ------------------------------------------------HHHHHHh----hhhcccC-----------CCC
Q 011978          313 ------------------------------------------------MKKAALE----RYNKIKG-----------NAP  329 (473)
Q Consensus       313 ------------------------------------------------~~~~~~~----~~~~~~~-----------~~~  329 (473)
                                                                      .......    ....+.+           ...
T Consensus       368 ~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg  447 (902)
T 2oaj_A          368 LLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG  447 (902)
T ss_dssp             EEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE
T ss_pred             EEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC
Confidence                                                            0000000    0000000           123


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCe-ee----e-----cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc------
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPK-TR----M-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------  393 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~-~~----~-----~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~------  393 (473)
                      ..+++|+.|++|++||........ ..    +     .+|...|.+++|+|||++||+|+.||+|+|||+.+++      
T Consensus       448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~  527 (902)
T 2oaj_A          448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN  527 (902)
T ss_dssp             EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred             cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccc
Confidence            478999999999999987653211 11    1     1788899999999999999999999999999987652      


Q ss_pred             ---------------------------------------eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978          394 ---------------------------------------FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       394 ---------------------------------------~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                                                             ++..+.+|.++|++|+||||| +||+|+.|++|+|||++++
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~  606 (902)
T 2oaj_A          528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP  606 (902)
T ss_dssp             ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred             cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence                                                   467888999999999999999 9999999999999999887


Q ss_pred             ceee-----ccc-ccCCCEEEEEEe-----eCC---CEEEEEeCCCcEEecc
Q 011978          435 KLKQ-----DLP-GHADEVFAVDWS-----PDG---EKVASGGKDRVLKLWM  472 (473)
Q Consensus       435 ~~~~-----~~~-~h~~~i~~l~~s-----~d~---~~l~s~~~D~~i~~w~  472 (473)
                      ..+.     .+. +|...|++++|+     |||   ++|++|+.|++|++|+
T Consensus       607 ~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          607 AIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK  658 (902)
T ss_dssp             EEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred             eEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence            6542     454 899999999999     885   8999999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.4e-43  Score=330.32  Aligned_cols=320  Identities=16%  Similarity=0.272  Sum_probs=275.8

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~  186 (473)
                      |.++|.+++|+|||++++++..++.+.+|+...........+|...|.+++|+|++++|++++ ||.|++||+.+++...
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            566889999999999999988888777776665555555568999999999999999999999 9999999998765332


Q ss_pred             cc----CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe--EEEEecCccccEEEEEecCCC-eEEEeec
Q 011978          187 NP----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (473)
Q Consensus       187 ~~----~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~-~l~s~~~  259 (473)
                      ..    ..+|...|.++.|+|     ++..+++++.|+.|++||+.+++  ....+.+|...|.+++|++++ .+++++.
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  161 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLP-----DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS  161 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECT-----TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             eeecccccCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence            22    127889999999987     45689999999999999999877  667788999999999999987 6889999


Q ss_pred             CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  339 (473)
                      |+.|++||+++++.+..+..|...+.+++++++                                    ...+++++.|+
T Consensus       162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~l~~~~~dg  205 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISND------------------------------------GTKLWTGGLDN  205 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------------------SSEEEEEETTS
T ss_pred             CCcEEEEeCCCCceeeeeecccCceEEEEECCC------------------------------------CCEEEEEecCC
Confidence            999999999999999999999999999988765                                    24688999999


Q ss_pred             eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEE
Q 011978          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS  419 (473)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s  419 (473)
                      .+++||+......  ....+...+.+++|+|++++|++++.|+.|++||..+++.. .+..|...|.+++|+|++++|++
T Consensus       206 ~i~~~d~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~  282 (337)
T 1gxr_A          206 TVRSWDLREGRQL--QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             EEEEEETTTTEEE--EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEE
T ss_pred             cEEEEECCCCceE--eeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEE
Confidence            9999998654322  22346778999999999999999999999999999988754 56789999999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          420 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       420 ~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++.||.|++||+.+++..... .|...|.+++|+|++++|++++.|+.|++|+
T Consensus       283 ~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          283 TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            999999999999998776544 4788999999999999999999999999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-43  Score=366.18  Aligned_cols=356  Identities=12%  Similarity=0.108  Sum_probs=267.7

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~  184 (473)
                      .||.+.|.+++|+|++++||+|+.||+|+||+..+......+ .|..+|.+++|+| |++|++++.|++|++||+.+++.
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence            479999999999999999999999999999999877655543 4788999999999 88999999999999999998876


Q ss_pred             ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE-----------EEecCccccEEEEEecCC--
Q 011978          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-----------ICLSGHTLAVTCVKWGGD--  251 (473)
Q Consensus       185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~-----------~~~~~h~~~v~~~~~~~~--  251 (473)
                      ....  .|...|.++.|+|     ++.++++|+.||+|++||+.++++.           ..+.+|...|.+++|+|+  
T Consensus        92 ~~~~--~~~~~V~~v~~sp-----~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           92 LTTV--FVPGKITSIDTDA-----SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             EEEE--ECSSCEEEEECCT-----TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             EEEE--cCCCCEEEEEECC-----CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence            5432  2667899999887     5678999999999999999988764           234678999999999996  


Q ss_pred             CeEEEeecCCeEEEEECCCCceeeeeecc------------------CceEEEEEecccce-eeeccccCCCcccCCHHH
Q 011978          252 GVIYTGSQDCTIKVWETTQGKLIRELKGH------------------GHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEE  312 (473)
Q Consensus       252 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  312 (473)
                      +.+++|+.|+.| +||+++++.++.+..|                  ...|.+++++|+.. +.++..|...+.|.....
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            378899999999 9999999988877655                  46799999999864 455555555444432110


Q ss_pred             HHHHHHhhh-----hcc---------cCCC------------C---ceEEEecCC-----ceEEEEe-------------
Q 011978          313 MKKAALERY-----NKI---------KGNA------------P---ERLVSGSDD-----FTMFLWE-------------  345 (473)
Q Consensus       313 ~~~~~~~~~-----~~~---------~~~~------------~---~~l~~~~~d-----~~i~iwd-------------  345 (473)
                      .. ......     ...         ....            +   ..+++|+.|     ..+.+|+             
T Consensus       244 ~~-~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~  322 (902)
T 2oaj_A          244 HM-IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE  322 (902)
T ss_dssp             CE-EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred             cE-EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence            00 000000     000         0011            1   134555443     1444444             


Q ss_pred             ----------------------------------------------------------CCCCCCCee-------------
Q 011978          346 ----------------------------------------------------------PAVSKQPKT-------------  354 (473)
Q Consensus       346 ----------------------------------------------------------~~~~~~~~~-------------  354 (473)
                                                                                ...+.....             
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~  402 (902)
T 2oaj_A          323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP  402 (902)
T ss_dssp             HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred             hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence                                                                      211100000             


Q ss_pred             ---------------------------eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE--EEe----e--
Q 011978          355 ---------------------------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AVF----R--  399 (473)
Q Consensus       355 ---------------------------~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~--~~~----~--  399 (473)
                                                 .+.+|...+.+++|+|++++||+|+.|++|++||+.+++..  ..+    .  
T Consensus       403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~  482 (902)
T 2oaj_A          403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRT  482 (902)
T ss_dssp             BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHH
T ss_pred             CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhh
Confidence                                       01223333445566899999999999999999999887531  111    1  


Q ss_pred             ---CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----------------------------------------
Q 011978          400 ---GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK-----------------------------------------  435 (473)
Q Consensus       400 ---~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~-----------------------------------------  435 (473)
                         +|...|++|+|+|||++||+|+.||+|+|||+.+++                                         
T Consensus       483 ~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (902)
T 2oaj_A          483 LNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR  562 (902)
T ss_dssp             TTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred             cCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence               789999999999999999999999999999997652                                         


Q ss_pred             ----eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          436 ----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       436 ----~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                          .+..+.+|.+.|++++||||| +||+|+.|++|+||+
T Consensus       563 ~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd  602 (902)
T 2oaj_A          563 QGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID  602 (902)
T ss_dssp             EEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred             CccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence                256678899999999999999 999999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5e-42  Score=320.34  Aligned_cols=286  Identities=27%  Similarity=0.500  Sum_probs=237.9

Q ss_pred             ccccccCCcccEEEEEECCC-CCeEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978          100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~-~~~lat~s~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~  173 (473)
                      +..+|.||++.|++|+|+|+ +++|||||.|++|+|||+.+..     +...+.+|...|.+++|+|+|++|++++.|+.
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~  109 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT  109 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence            34578999999999999998 6899999999999999987643     45567899999999999999999999999999


Q ss_pred             EEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE-EEEecCccccEEEEEecCCC
Q 011978          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGDG  252 (473)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~  252 (473)
                      |++|+........ ....+...+....+.+     ....+++++.|+.+++||...... .....+|...+.+++|.+++
T Consensus       110 i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          110 LRLWDLTTGTTTR-RFVGHTKDVLSVAFSS-----DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             EEEEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             ceEEeecccceee-eecCCCCceeEEEEee-----cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence            9999998766443 2344555666666554     456899999999999999876544 34567899999999998654


Q ss_pred             ---eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       253 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                         .+++++.|+.|++||+++++.+..+                                                    
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~----------------------------------------------------  211 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNH----------------------------------------------------  211 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEE----------------------------------------------------
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEe----------------------------------------------------
Confidence               5788999999999998876554332                                                    


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~  409 (473)
                                                 .+|...|++++|+|++++|++|+.|+.|++||+++++.+..+..+ ..|.+++
T Consensus       212 ---------------------------~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~  263 (340)
T 4aow_A          212 ---------------------------IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALC  263 (340)
T ss_dssp             ---------------------------CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred             ---------------------------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeee
Confidence                                       245567899999999999999999999999999999999888755 5899999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCceeec---------ccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQD---------LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~---------~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+|++.++ +++.|+.|++||++++.....         ..+|...|++++|+|||++|++|+.|++|+||+
T Consensus       264 ~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          264 FSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             ECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            99988655 556799999999988765443         346888999999999999999999999999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7.2e-42  Score=331.59  Aligned_cols=317  Identities=27%  Similarity=0.514  Sum_probs=279.0

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ...+.||.+.|.. +++++|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+  ++.|++|+.||.|++||+.
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            3467899997643 255579999999999999999999999998999999999999997  5699999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecC
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD  260 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d  260 (473)
                      +++... .+.+|...|.++.|.+       ..+++++.||+|++||+.+++++..+.+|...|.++.|+ +..+++|+.|
T Consensus       188 ~~~~~~-~~~~h~~~v~~~~~~~-------~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d  258 (445)
T 2ovr_B          188 TGECIH-TLYGHTSTVRCMHLHE-------KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAYD  258 (445)
T ss_dssp             TTEEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEETT
T ss_pred             cCcEEE-EECCCCCcEEEEEecC-------CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC-CCEEEEEcCC
Confidence            887653 4678999999998853       579999999999999999999999999999999999994 4579999999


Q ss_pred             CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      +.|++||+++++.+..+.+|...|.++.+.                                      ...+++++.|+.
T Consensus       259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------------------------------------~~~l~~~~~d~~  300 (445)
T 2ovr_B          259 FMVKVWDPETETCLHTLQGHTNRVYSLQFD--------------------------------------GIHVVSGSLDTS  300 (445)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSSCEEEEEEC--------------------------------------SSEEEEEETTSC
T ss_pred             CEEEEEECCCCcEeEEecCCCCceEEEEEC--------------------------------------CCEEEEEeCCCe
Confidence            999999999999999999999889888762                                      236899999999


Q ss_pred             EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC---CccCEEEEEEecCCCEE
Q 011978          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQISWSADSRLL  417 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~---h~~~v~~v~~sp~g~~l  417 (473)
                      +++||..... ....+.+|...+.++++  ++++|++|+.||.|++||+++++.+..+.+   |...|.+++|+  +++|
T Consensus       301 i~i~d~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l  375 (445)
T 2ovr_B          301 IRVWDVETGN-CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV  375 (445)
T ss_dssp             EEEEETTTCC-EEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred             EEEEECCCCC-EEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence            9999987543 44566788888888776  567999999999999999999999999886   88899999995  6799


Q ss_pred             EEEeCCCcEEEEECCCCceeecc-----cccCCCEEEEEEeeCCCEEEEEeCCCc----EEecc
Q 011978          418 LSGSKDSTLKVWDIRTQKLKQDL-----PGHADEVFAVDWSPDGEKVASGGKDRV----LKLWM  472 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~~~~~~~~~-----~~h~~~i~~l~~s~d~~~l~s~~~D~~----i~~w~  472 (473)
                      ++|+.||.|++||+.+++....+     .+|...|++++|+|++.++++|+.||+    +.+|+
T Consensus       376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence            99999999999999999887766     468889999999999999999999998    88885

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.2e-42  Score=375.09  Aligned_cols=342  Identities=23%  Similarity=0.417  Sum_probs=284.2

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ...+.+|.+.|++++|+|+|++||+|+.||+|++||+.++..+..+.+|...|.+++|+|+|++|++++.||.|++||+.
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeec
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~  259 (473)
                      +++... .+.+|...|.++.|.|..   +...+++++.|+.|++||+.+++++..+.+|...|.+++|++++ .+++++.
T Consensus       688 ~~~~~~-~~~~~~~~v~~~~~~~~~---~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  763 (1249)
T 3sfz_A          688 TGKLVH-TYDEHSEQVNCCHFTNKS---NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA  763 (1249)
T ss_dssp             TCCEEE-EEECCSSCEEEEEECSSS---SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred             CCceEE-EEcCCCCcEEEEEEecCC---CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence            987654 467899999999998732   33578999999999999999999999999999999999999987 6889999


Q ss_pred             CCeEEEEECCCCceeeeeeccCceEEEEEeccc--ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      ||+|++||+.+++....+...............  .......+                         ......+++++ 
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------------------------s~dg~~l~~~~-  817 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW-------------------------SADGDKIIVAA-  817 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB-------------------------CTTSSEEEEEE-
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE-------------------------CCCCCEEEEEc-
Confidence            999999999988776655432211100000000  00000001                         01123455554 


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL  417 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l  417 (473)
                      ++.+.+||............+|...+.+++|+|+++++++++.|+.|++||..++..+..+.+|.+.|.+++|+|+|++|
T Consensus       818 ~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l  897 (1249)
T 3sfz_A          818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF  897 (1249)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEE
Confidence            78999999887766666666899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCC----------------------------------------------------------------
Q 011978          418 LSGSKDSTLKVWDIRT----------------------------------------------------------------  433 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~~----------------------------------------------------------------  433 (473)
                      ++++.||.|++||+..                                                                
T Consensus       898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~  977 (1249)
T 3sfz_A          898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA  977 (1249)
T ss_dssp             EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE
T ss_pred             EEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE
Confidence            9999999999998531                                                                


Q ss_pred             ---------------CceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          434 ---------------QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       434 ---------------~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                                     ++....+.+|...|.+++|+|||++|++++.|+.|++|+
T Consensus       978 ~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A          978 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp             EEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred             EEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence                           223344567888999999999999999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.5e-43  Score=339.21  Aligned_cols=341  Identities=18%  Similarity=0.196  Sum_probs=273.9

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      +.+++++|+|++++|++++.|+.|++||+.++.....+..| ..+....|+|++++|++|+.||.|++||+.+++.. ..
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~  134 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR-EI  134 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE-EE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee-ee
Confidence            34557899999999999999999999999877655444455 44555678999999999999999999999887654 34


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEE
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE  267 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd  267 (473)
                      +.+|...|.++.|+|     ++..+++++.|+.|++||+.+++.+..+.+|...|.+++|++++ .+++++.|++|++||
T Consensus       135 ~~~h~~~v~~~~~~~-----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  209 (420)
T 3vl1_A          135 DQAHVSEITKLKFFP-----SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE  209 (420)
T ss_dssp             TTSSSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cccccCccEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence            678999999999987     45689999999999999999999999999999999999999987 588999999999999


Q ss_pred             CCCCceeeeeec---cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978          268 TTQGKLIRELKG---HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (473)
Q Consensus       268 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  344 (473)
                      +++++.+..+..   +...+.++++.+.............  .             ...........+++++.|+.+++|
T Consensus       210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--v-------------~~~~~s~~~~~l~~~~~dg~i~i~  274 (420)
T 3vl1_A          210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK--K-------------NNLEFGTYGKYVIAGHVSGVITVH  274 (420)
T ss_dssp             TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC--C-------------CTTCSSCTTEEEEEEETTSCEEEE
T ss_pred             CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc--c-------------cceEEcCCCCEEEEEcCCCeEEEE
Confidence            999998888864   5567777776543211000000000  0             000011234578999999999999


Q ss_pred             eCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEECCCcEEEEeCCCCce-EEEeeC-CccCEEEEEEecCCCEEEEEe
Q 011978          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKF-VAVFRG-HVGPVYQISWSADSRLLLSGS  421 (473)
Q Consensus       345 d~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~~~~-~~~~~~-h~~~v~~v~~sp~g~~l~s~s  421 (473)
                      |+...........+|...|.+++|+|+++ +|++|+.||.|++||+++++. +..+.+ |...|.++.| +++++|++++
T Consensus       275 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~  353 (420)
T 3vl1_A          275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG  353 (420)
T ss_dssp             ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET
T ss_pred             ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec
Confidence            99876655555667889999999999999 999999999999999998754 667766 6778888855 5788999999


Q ss_pred             CCCcEEEEECCCCc---------eeecccccCCCEEEEEEeeCCC---EEEEEeCCCcEEecc
Q 011978          422 KDSTLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGE---KVASGGKDRVLKLWM  472 (473)
Q Consensus       422 ~Dg~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~~w~  472 (473)
                      .||.|++||+....         ....+.+|...|.+++|+||++   .+++++.++.+.+|.
T Consensus       354 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          354 FDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             TTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             CCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence            99999999987631         1223557888999999999999   888889999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-41  Score=342.78  Aligned_cols=364  Identities=18%  Similarity=0.257  Sum_probs=278.4

Q ss_pred             cccccccCCccc-EEEEEECC--CCCeEEEEeCCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEECCCCCeEEE
Q 011978           99 RCSATIAGHTEA-VLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ--------TPMFKCTGHKNWVLCIAWSADGKHLVS  167 (473)
Q Consensus        99 ~~~~~~~gh~~~-V~~~~~sp--~~~~lat~s~d~~i~iwd~~~~--------~~~~~~~~~~~~v~~l~~s~dg~~l~s  167 (473)
                      .....+.+|.+. |.+++|+|  ++++||+|+.||.|++||+.++        .....+..|...|.+++|+|++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            456678899999 99999999  9999999999999999999754        455667789999999999999999999


Q ss_pred             EecC----CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc--
Q 011978          168 GSKA----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL--  241 (473)
Q Consensus       168 ~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~--  241 (473)
                      ++.+    +.|++||.  ++.. ..+.+|...|.++.|+|..    ...+++++.|+.|++||+.+++.+..+.+|..  
T Consensus       134 ~~~~~~~~~~v~~~d~--~~~~-~~~~~~~~~v~~~~~~~~~----~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  206 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDS--GNSL-GEVSGHSQRINACHLKQSR----PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG  206 (615)
T ss_dssp             EECCSSCSEEEEETTT--CCEE-EECCSCSSCEEEEEECSSS----SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred             eccCCCCccEEEEEEC--CCcc-eeeecCCccEEEEEECCCC----CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC
Confidence            9988    78999983  3333 3567899999999998732    12799999999999999999999999999999  


Q ss_pred             -cEEEEEecCC-C-eEEEeecCCeEEEEECCCCceeeee-e---ccCceEEEEEecccceeeeccccCCCcccCCHHHHH
Q 011978          242 -AVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIREL-K---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (473)
Q Consensus       242 -~v~~~~~~~~-~-~l~s~~~d~~i~~wd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (473)
                       .|.+++|+++ + .+++++.|+.|++||+.+++.+..+ .   .|...|.++.++....+..+..+.....|.......
T Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcE
Confidence             9999999998 6 5889999999999999999999988 6   899999999998222344444443322221110000


Q ss_pred             HHHH--------hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC----------------------------
Q 011978          315 KAAL--------ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG----------------------------  358 (473)
Q Consensus       315 ~~~~--------~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------------------------  358 (473)
                      ....        .............+++++.|+.+++||..... ....+.+                            
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          287 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE-VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS  365 (615)
T ss_dssp             EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE-EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT
T ss_pred             EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc-EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch
Confidence            0000        00000000123456677777777777654211 1111111                            


Q ss_pred             -----cc-------------------------------------------------------------------------
Q 011978          359 -----HQ-------------------------------------------------------------------------  360 (473)
Q Consensus       359 -----~~-------------------------------------------------------------------------  360 (473)
                           |.                                                                         
T Consensus       366 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (615)
T 1pgu_A          366 SMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL  445 (615)
T ss_dssp             EEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             hhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeeccc
Confidence                 22                                                                         


Q ss_pred             -cceeEEEECCCCcEEEEEEC-CCcEEEEeCCCCceE-EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978          361 -QLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFV-AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK  437 (473)
Q Consensus       361 -~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~~~~~~-~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~  437 (473)
                       ..+.+++|+  +++|++++. |+.|++||+.+++.. ..+.+|...|.+++|+|+|++|++++.||.|++||+.+++..
T Consensus       446 ~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  523 (615)
T 1pgu_A          446 NSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK  523 (615)
T ss_dssp             SSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce
Confidence             223333333  556666776 777777777766554 567789999999999999999999999999999999999999


Q ss_pred             ecccc-cCCCEEEEEEee----------CCCEEEEEeCCCcEEecc
Q 011978          438 QDLPG-HADEVFAVDWSP----------DGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       438 ~~~~~-h~~~i~~l~~s~----------d~~~l~s~~~D~~i~~w~  472 (473)
                      ..+.+ |...|++++|+|          ++++|++++.|+.|++|.
T Consensus       524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~  569 (615)
T 1pgu_A          524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS  569 (615)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred             eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence            88888 999999999999          999999999999999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-42  Score=376.84  Aligned_cols=388  Identities=23%  Similarity=0.380  Sum_probs=311.7

Q ss_pred             cccEEEEEEEece----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE
Q 011978           78 VEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK  145 (473)
Q Consensus        78 ~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~  145 (473)
                      ...+..+.+.|..          .++++..  ......+.+|.+.|.+++|+|++++||+++.|++|++||+.+++.+..
T Consensus       615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~  694 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT  694 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            3455666666543          2334433  345567789999999999999999999999999999999999999999


Q ss_pred             EcCCCCCEEEEEECC--CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEE
Q 011978          146 CTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (473)
Q Consensus       146 ~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~  223 (473)
                      +.+|...|.+++|+|  ++..+++|+.|+.|++||+.+++... .+.+|...|.++.|+|     ++..+++++.||.|+
T Consensus       695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~sp-----~~~~l~s~s~dg~v~  768 (1249)
T 3sfz_A          695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN-TMFGHTNSVNHCRFSP-----DDELLASCSADGTLR  768 (1249)
T ss_dssp             EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-EECCCSSCEEEEEECS-----STTEEEEEESSSEEE
T ss_pred             EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-eecCCCCCEEEEEEec-----CCCEEEEEECCCeEE
Confidence            999999999999999  55689999999999999999887553 4678999999999987     456899999999999


Q ss_pred             EEECCCCeEEEEe-------------------------------------------------------cCccccEEEEEe
Q 011978          224 IWDVSLRKCVICL-------------------------------------------------------SGHTLAVTCVKW  248 (473)
Q Consensus       224 iwd~~~~~~~~~~-------------------------------------------------------~~h~~~v~~~~~  248 (473)
                      +||+.+++....+                                                       .+|...|.+++|
T Consensus       769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~  848 (1249)
T 3sfz_A          769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF  848 (1249)
T ss_dssp             EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred             EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEE
Confidence            9998776543322                                                       267788899999


Q ss_pred             cCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccce-eeeccccCCCcccCCHHHHHHHHHhh------
Q 011978          249 GGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAALER------  320 (473)
Q Consensus       249 ~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------  320 (473)
                      ++++ .+++++.|+.|++||+.++..+..+.+|...|.+++++++.. +.++..+.....|.............      
T Consensus       849 sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~  928 (1249)
T 3sfz_A          849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV  928 (1249)
T ss_dssp             CSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence            9887 588999999999999999999999999999999999998764 44555555444443221100000000      


Q ss_pred             -----------------------------------hh-cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccccee
Q 011978          321 -----------------------------------YN-KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (473)
Q Consensus       321 -----------------------------------~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  364 (473)
                                                         .. .........+++++.++.+.+|+.... .......+|...|.
T Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~-~~~~~~~~h~~~v~ 1007 (1249)
T 3sfz_A          929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN-RVFSSGVGHKKAVR 1007 (1249)
T ss_dssp             EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT-SCEEECCCCSSCCC
T ss_pred             EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC-ceeeecccCCCceE
Confidence                                               00 001123457889999999999998654 34556678888999


Q ss_pred             EEEECCCCcEEEEEECCCcEEEEeCCCC----------------------------------------ceEEEeeCCccC
Q 011978          365 HVYFSPDGQWVASASFDKSIKLWNGTTG----------------------------------------KFVAVFRGHVGP  404 (473)
Q Consensus       365 ~v~~sp~g~~lasgs~d~~v~lwd~~~~----------------------------------------~~~~~~~~h~~~  404 (473)
                      +++|+|+|++|++++.|+.|++||..++                                        +....+.+|.+.
T Consensus      1008 ~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 1087 (1249)
T 3sfz_A         1008 HIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT 1087 (1249)
T ss_dssp             CEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSC
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCc
Confidence            9999999999999988888888876554                                        333456678889


Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          405 VYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       405 v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |.+++|+|++++|++++.||+|++||+.+++....+.+|...|++++|+|||++|++++.||.|++|+
T Consensus      1088 v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A         1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp             CCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            99999999999999999999999999999998899999999999999999999999999999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.7e-41  Score=347.09  Aligned_cols=284  Identities=29%  Similarity=0.506  Sum_probs=240.2

Q ss_pred             ccccCCcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCC-----ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978          102 ATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~  175 (473)
                      ..+.+|++.|++++|+|++ ++|++|+.|++|++||+.+.     .....+.+|...|.+++|+|+|++|++|+.||+|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            4578999999999999875 78999999999999998753     23456789999999999999999999999999999


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe---cCccccEEEEEecCCC
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVKWGGDG  252 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~  252 (473)
                      +||+.+++... .+.+|...|.++.|+|     ++.++++++.|++|++||..........   .+|...|.|++|++++
T Consensus       456 vwd~~~~~~~~-~~~~h~~~v~~~~~s~-----~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          456 LWDLAAGVSTR-RFVGHTKDVLSVAFSL-----DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             EEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             EEECCCCccee-EEeCCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence            99999887543 4678999999999987     4578999999999999998755433322   4788899999999875


Q ss_pred             ---eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       253 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                         .+++++.|++|++||+++++....                                                     
T Consensus       530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~-----------------------------------------------------  556 (694)
T 3dm0_A          530 LQPTIVSASWDKTVKVWNLSNCKLRST-----------------------------------------------------  556 (694)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEE-----------------------------------------------------
T ss_pred             CcceEEEEeCCCeEEEEECCCCcEEEE-----------------------------------------------------
Confidence               589999999999999876554332                                                     


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~  409 (473)
                                                +.+|...|++++|+|++++|++|+.|+.|++||+.+++.+..+.. ...|.+++
T Consensus       557 --------------------------~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~  609 (694)
T 3dm0_A          557 --------------------------LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALC  609 (694)
T ss_dssp             --------------------------ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEE
T ss_pred             --------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEE
Confidence                                      235667789999999999999999999999999999998888764 46899999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCceeecccccC-------------------CCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-------------------DEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~-------------------~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                      |+|++.+|++++ |+.|++||+++++....+..+.                   ..+++++|||||++|+||+.||+|++
T Consensus       610 ~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i  688 (694)
T 3dm0_A          610 FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV  688 (694)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence            999999888776 5669999999887765543221                   13788999999999999999999999


Q ss_pred             cc
Q 011978          471 WM  472 (473)
Q Consensus       471 w~  472 (473)
                      |.
T Consensus       689 W~  690 (694)
T 3dm0_A          689 WG  690 (694)
T ss_dssp             EE
T ss_pred             Ee
Confidence            96

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-41  Score=316.68  Aligned_cols=284  Identities=19%  Similarity=0.309  Sum_probs=247.9

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      ..+.||.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  105 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN  105 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC-----CcEEEEECCCCe-----------EEEEecCccc--cE
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRK-----------CVICLSGHTL--AV  243 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-----g~i~iwd~~~~~-----------~~~~~~~h~~--~v  243 (473)
                      ++......  +...+.++.|.|     ++..+++++.+     +.+++||+....           ....+.+|..  .+
T Consensus       106 ~~~~~~~~--~~~~v~~~~~~~-----~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B          106 GQCVATWK--SPVPVKRVEFSP-----CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             CCEEEEEE--CSSCEEEEEECT-----TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             CcEEEEee--cCCCeEEEEEcc-----CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            87654332  778899999987     45689999988     999999987542           2233445555  88


Q ss_pred             EEEEecCCC-eEEEeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978          244 TCVKWGGDG-VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (473)
Q Consensus       244 ~~~~~~~~~-~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
                      .+++|++++ .+++++.||.|++||+++ ++.+..                                             
T Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------------------------------------------  213 (369)
T 3zwl_B          179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS---------------------------------------------  213 (369)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE---------------------------------------------
T ss_pred             eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE---------------------------------------------
Confidence            889998877 577888889999998876 332221                                             


Q ss_pred             hcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC
Q 011978          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (473)
Q Consensus       322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h  401 (473)
                                                        +..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +
T Consensus       214 ----------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~  258 (369)
T 3zwl_B          214 ----------------------------------IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-T  258 (369)
T ss_dssp             ----------------------------------EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred             ----------------------------------EecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-C
Confidence                                              22355678899999999999999999999999999999988887 7


Q ss_pred             ccCEEEEEEecCCCEEEEEeCCC--------------cEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCc
Q 011978          402 VGPVYQISWSADSRLLLSGSKDS--------------TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV  467 (473)
Q Consensus       402 ~~~v~~v~~sp~g~~l~s~s~Dg--------------~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~  467 (473)
                      ...+.+++|+|+++++++++.++              .+++||+.+++....+.+|...|.+++|+||+++|++++.|+.
T Consensus       259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  338 (369)
T 3zwl_B          259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF  338 (369)
T ss_dssp             SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence            78999999999999999999988              8999999999999999999999999999999999999999999


Q ss_pred             EEecc
Q 011978          468 LKLWM  472 (473)
Q Consensus       468 i~~w~  472 (473)
                      |++|.
T Consensus       339 v~iw~  343 (369)
T 3zwl_B          339 IRLHH  343 (369)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7e-42  Score=326.52  Aligned_cols=293  Identities=20%  Similarity=0.261  Sum_probs=251.2

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc------eeEEEcCCCCCEEEEEECCC----C---CeEEE
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSAD----G---KHLVS  167 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~------~~~~~~~~~~~v~~l~~s~d----g---~~l~s  167 (473)
                      ...+.+|.+.|++++|+|  ++|++|+.||+|++||+.++.      ....+.+|...|.+++|+|+    +   ++|++
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence            345789999999999999  899999999999999998877      67778899999999999999    9   99999


Q ss_pred             EecCCeEEEeeCCCCccc----cccCCCc-----CCcEEEEEeceeccCCCCce-EEEeeCCCcEEEEECCC------Ce
Q 011978          168 GSKAGELQCWDPQTGKPS----GNPLSGH-----KKWITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSL------RK  231 (473)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~----~~~~~~~-----~~~v~~i~~~~~~~~~~~~~-~~s~s~dg~i~iwd~~~------~~  231 (473)
                      ++.||.|++||+.+++..    ...+..|     ...|.++.|.+... +++.. +++++.||.|++||+..      ++
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND-RLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC-CCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            999999999999877641    2345667     58999999982100 14467 99999999999999988      55


Q ss_pred             EEE-----Ee-------cCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978          232 CVI-----CL-------SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (473)
Q Consensus       232 ~~~-----~~-------~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (473)
                      .+.     .+       ..|...|.+++|++++.+++++.|+.|++||+++++.+..+..                    
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------  225 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFES--------------------  225 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEEC--------------------
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEec--------------------
Confidence            544     55       4588899999999988778899999999999987765543321                    


Q ss_pred             ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc---ccceeEEEECCCCcEEE
Q 011978          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---QQLVNHVYFSPDGQWVA  376 (473)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~v~~sp~g~~la  376 (473)
                                                                              ..+|   ...+.+++|+|++++|+
T Consensus       226 --------------------------------------------------------~~~h~~~~~~i~~i~~~~~~~~l~  249 (397)
T 1sq9_A          226 --------------------------------------------------------QHSMINNSNSIRSVKFSPQGSLLA  249 (397)
T ss_dssp             --------------------------------------------------------CC---CCCCCEEEEEECSSTTEEE
T ss_pred             --------------------------------------------------------cccccccCCccceEEECCCCCEEE
Confidence                                                                    0113   45689999999999999


Q ss_pred             EEECC---CcEEEEeCCCCceEEEeeC-------------CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc
Q 011978          377 SASFD---KSIKLWNGTTGKFVAVFRG-------------HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL  440 (473)
Q Consensus       377 sgs~d---~~v~lwd~~~~~~~~~~~~-------------h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~  440 (473)
                      +++.|   +.|++||+.+++.+..+.+             |...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus       250 ~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          250 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence            99999   9999999999999999998             9999999999999999999999999999999999888888


Q ss_pred             c------cc---------------CCCEEEEEEeeCC----------CEEEEEeCCCcEEecc
Q 011978          441 P------GH---------------ADEVFAVDWSPDG----------EKVASGGKDRVLKLWM  472 (473)
Q Consensus       441 ~------~h---------------~~~i~~l~~s~d~----------~~l~s~~~D~~i~~w~  472 (473)
                      .      +|               ...|++++|+|++          ++|++++.|+.|++|+
T Consensus       330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          330 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             ecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            8      77               8999999999998          7999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-41  Score=324.46  Aligned_cols=291  Identities=26%  Similarity=0.513  Sum_probs=233.2

Q ss_pred             cccEEEEEEEece----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE
Q 011978           78 VEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK  145 (473)
Q Consensus        78 ~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~  145 (473)
                      ...+..+.+.|..          .++++..  ..+...+.+|.+.|.+++|+|++++|++|+.|++|++||+.+...+..
T Consensus       108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~  187 (410)
T 1vyh_C          108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT  187 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Confidence            3456667776642          2344443  345677899999999999999999999999999999999999888888


Q ss_pred             EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEE
Q 011978          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (473)
Q Consensus       146 ~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iw  225 (473)
                      +.+|...|.+++|+|++++|++|+.|++|++||+.++.... .+.+|...|..+.++|     ++..+++|+.|++|++|
T Consensus       188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~g~~l~s~s~D~~v~vw  261 (410)
T 1vyh_C          188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQ-----DGTLIASCSNDQTVRVW  261 (410)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEE
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCeEEEE
Confidence            89999999999999999999999999999999999887653 4678999999998876     56789999999999999


Q ss_pred             ECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCc
Q 011978          226 DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (473)
Q Consensus       226 d~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (473)
                      |+.++++...+.+|...|.+++|++++........         .+.....                             
T Consensus       262 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~-----------------------------  303 (410)
T 1vyh_C          262 VVATKECKAELREHRHVVECISWAPESSYSSISEA---------TGSETKK-----------------------------  303 (410)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC---------CSCC--------------------------------
T ss_pred             ECCCCceeeEecCCCceEEEEEEcCcccccchhhh---------ccccccc-----------------------------
Confidence            99999999999999999999999986421000000         0000000                             


Q ss_pred             ccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEE
Q 011978          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (473)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~  385 (473)
                                         .......+++|+.|+++++||+.... ....+.+|...|++++|+|+|++|++|+.|++|+
T Consensus       304 -------------------~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~  363 (410)
T 1vyh_C          304 -------------------SGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR  363 (410)
T ss_dssp             -----------------------CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred             -------------------cCCCCCEEEEEeCCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence                               00012245666666666666654332 2344567888899999999999999999999999


Q ss_pred             EEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          386 LWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       386 lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      +||+.+++++..+.+|.+.|++++|+|++.+|++||.||+|++|+++
T Consensus       364 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99999999999999999999999999999999999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.7e-41  Score=310.68  Aligned_cols=247  Identities=27%  Similarity=0.454  Sum_probs=224.7

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ...+.||...|.+++|+|++..+++++.|++|++||+.+++++..+..|...+.+++|+|++++|++|+.||.|++|+++
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~  152 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE  152 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence            34578999999999999999999999999999999999999888888899999999999999999999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeec
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~  259 (473)
                      +++... .+..|...+.++.|+|     ++.++++++.|+.|++||+++++.+..+.+|...|.+++|++++ .|++|+.
T Consensus       153 ~~~~~~-~~~~~~~~v~~~~~sp-----dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          153 SGKKEY-SLDTRGKFILSIAYSP-----DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             TCSEEE-EEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred             CCceeE-EecCCCceEEEEEECC-----CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence            887543 4567888899999987     56789999999999999999999999999999999999999987 5889999


Q ss_pred             CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  339 (473)
                      |++|++||+++++....                                                               
T Consensus       227 dg~i~iwd~~~~~~~~~---------------------------------------------------------------  243 (321)
T 3ow8_A          227 DGYIKIYDVQHANLAGT---------------------------------------------------------------  243 (321)
T ss_dssp             TSCEEEEETTTCCEEEE---------------------------------------------------------------
T ss_pred             CCeEEEEECCCcceeEE---------------------------------------------------------------
Confidence            99999999876554332                                                               


Q ss_pred             eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEE
Q 011978          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS  419 (473)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s  419 (473)
                                      +.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|.+.|.+++|+|++++|++
T Consensus       244 ----------------~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s  307 (321)
T 3ow8_A          244 ----------------LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS  307 (321)
T ss_dssp             ----------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ----------------EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence                            2346667899999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEECC
Q 011978          420 GSKDSTLKVWDIR  432 (473)
Q Consensus       420 ~s~Dg~i~iwd~~  432 (473)
                      ++.||+|++||..
T Consensus       308 ~~~d~~i~vwd~p  320 (321)
T 3ow8_A          308 VGDDQEIHIYDCP  320 (321)
T ss_dssp             EETTCCEEEEECC
T ss_pred             EeCCCeEEEEeCC
Confidence            9999999999963

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.6e-40  Score=320.74  Aligned_cols=321  Identities=25%  Similarity=0.417  Sum_probs=274.1

Q ss_pred             cccccCCcccE-EEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          101 SATIAGHTEAV-LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       101 ~~~~~gh~~~V-~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      ...+.+|...| .++++  ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.||+|++||+
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~  190 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI  190 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence            34678999885 56566  67899999999999999999999999999999999999999988 9999999999999999


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe-----------------------EEEEe
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-----------------------CVICL  236 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~-----------------------~~~~~  236 (473)
                      ++++... .+.+|...|.++.|.+.   .+...+++++.|++|++||+.++.                       .+..+
T Consensus       191 ~~~~~~~-~~~~h~~~v~~l~~~~~---~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          191 KKGCCTH-VFEGHNSTVRCLDIVEY---KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             TTTEEEE-EECCCSSCEEEEEEEES---SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             CCCcEEE-EECCCCCccEEEEEecC---CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            9887553 46789999999998863   245689999999999999998764                       35567


Q ss_pred             cCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHH
Q 011978          237 SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (473)
Q Consensus       237 ~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (473)
                      .+|...|.++..+ ...+++++.|+.|++||+.+++.+..+.+|...|.+++++++                        
T Consensus       267 ~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------  321 (464)
T 3v7d_B          267 RGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE------------------------  321 (464)
T ss_dssp             CCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT------------------------
T ss_pred             cCccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC------------------------
Confidence            8899999988654 347899999999999999999999999999999999998765                        


Q ss_pred             HHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE
Q 011978          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA  396 (473)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~  396 (473)
                                  ...+++++.|+.+++||.... .....+.+|...|.+++|+  +++|++|+.||.|++||+.+++...
T Consensus       322 ------------~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          322 ------------RKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             ------------TTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ------------CCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence                        236899999999999998654 3455677899999999997  5899999999999999999987666


Q ss_pred             EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec-ccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       397 ~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      .+. |...+..++|+|++++|++++ ||.|++||+.+++.+.. +.+|...|.+++|+ +...+++++.|+.+.+|
T Consensus       387 ~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          387 SYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             EEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             eec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            554 666788899999999999998 89999999999988875 67788999999998 44556666777777665

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-41  Score=329.62  Aligned_cols=318  Identities=15%  Similarity=0.228  Sum_probs=235.1

Q ss_pred             ccccccc-cCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCC---Cc---eeEEEcCCCCCEEEEEECCCCCeEEEEe
Q 011978           98 NRCSATI-AGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT---QT---PMFKCTGHKNWVLCIAWSADGKHLVSGS  169 (473)
Q Consensus        98 ~~~~~~~-~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~---~~---~~~~~~~~~~~v~~l~~s~dg~~l~s~~  169 (473)
                      .++...+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+   +.   ....+ .|...|.+++|+|++++|++|+
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s  130 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS  130 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence            3445566 88999999999999 999999999999999999865   32   22333 5899999999999999999999


Q ss_pred             cCCeEEEeeCC---CCccccccCCC------------cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE
Q 011978          170 KAGELQCWDPQ---TGKPSGNPLSG------------HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI  234 (473)
Q Consensus       170 ~dg~i~iwd~~---~~~~~~~~~~~------------~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~  234 (473)
                      .||.|++||+.   +++... ...+            +...+.++.+.   ...++..+++++.|+.|++||+++++++.
T Consensus       131 ~dg~i~vwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          131 KDGQIIVLKVNHYQQESEVK-FLNCECIRKINLKNFGKNEYAVRMRAF---VNEEKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             TTSEEEEEEEEEEEETTEEE-EEEEEEEEEEEGGGGSSCCCEEEEEEE---ECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEEeccccCCceee-ccccceeEEEEccCcccccCceEEEEE---EcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence            99999999984   443221 1111            33334444322   23456799999999999999999999999


Q ss_pred             EecC--ccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978          235 CLSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (473)
Q Consensus       235 ~~~~--h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (473)
                      .+.+  |...|++++|++++ .+++|+.||+|++||+++++.+..+. .|...|.++.+.+.+.                
T Consensus       207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s----------------  270 (437)
T 3gre_A          207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYG----------------  270 (437)
T ss_dssp             EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTC----------------
T ss_pred             EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccC----------------
Confidence            9988  89999999999987 58899999999999999988877765 5555666665443210                


Q ss_pred             HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (473)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~  390 (473)
                                      .....+++++.|+.+++||..... ....+.+|...+..+.|+|+++.+    .+.        
T Consensus       271 ----------------~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l----~~~--------  321 (437)
T 3gre_A          271 ----------------KNSVIVVGGSSKTFLTIWNFVKGH-CQYAFINSDEQPSMEHFLPIEKGL----EEL--------  321 (437)
T ss_dssp             ----------------TTEEEEEEESTTEEEEEEETTTTE-EEEEEESSSSCCCGGGGSCBCSSG----GGC--------
T ss_pred             ----------------CCccEEEEEcCCCcEEEEEcCCCc-EEEEEEcCCCCCccceeccccccc----ccc--------
Confidence                            001235555555555555543322 223334444444445555544433    010        


Q ss_pred             CCceEEEeeC--CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc--------------------------
Q 011978          391 TGKFVAVFRG--HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG--------------------------  442 (473)
Q Consensus       391 ~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--------------------------  442 (473)
                            .+.+  |...|++++|+ ++++|++|+.||.|++||+.+++....+.+                          
T Consensus       322 ------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (437)
T 3gre_A          322 ------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKR  394 (437)
T ss_dssp             ------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-
T ss_pred             ------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccc
Confidence                  0223  77789999999 779999999999999999998876665554                          


Q ss_pred             -----------cCCCEEEEEEeeC--CCEEEEEeCCCcEEecc
Q 011978          443 -----------HADEVFAVDWSPD--GEKVASGGKDRVLKLWM  472 (473)
Q Consensus       443 -----------h~~~i~~l~~s~d--~~~l~s~~~D~~i~~w~  472 (473)
                                 |.+.|++++|+++  +.+|+||+.||.|+||.
T Consensus       395 ~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          395 TSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                       8899999999998  78999999999999995

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-40  Score=305.40  Aligned_cols=281  Identities=27%  Similarity=0.378  Sum_probs=245.8

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      +....+.+|.+.|.+++| |++++|++|+.||.|++||+.++.....+..|...|.+++|+|++++|++++.||.+++|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            345677899999999999 9999999999999999999998888888888999999999999999999999999999999


Q ss_pred             CCCCc--cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-C-CeE
Q 011978          179 PQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-D-GVI  254 (473)
Q Consensus       179 ~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l  254 (473)
                      +....  .....+.+|...|.++.|.       +..+++++.|+.|++||  .++....+.+|...+.++.|.+ + ..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSFQ-------DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEEE-------TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             eeecCCCCcccchhhcccCEEEEEec-------CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence            87653  2233467899999999883       35899999999999999  6778888889999999999976 4 478


Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      ++++.|+.|++||..  +....+.                                                        
T Consensus       159 ~~~~~d~~i~i~d~~--~~~~~~~--------------------------------------------------------  180 (313)
T 3odt_A          159 LTASADKTIKLWQND--KVIKTFS--------------------------------------------------------  180 (313)
T ss_dssp             EEEETTSCEEEEETT--EEEEEEC--------------------------------------------------------
T ss_pred             EEEECCCCEEEEecC--ceEEEEe--------------------------------------------------------
Confidence            899999999999832  2211111                                                        


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS  414 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g  414 (473)
                                            ..|...+.+++|+|++. +++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++
T Consensus       181 ----------------------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  237 (313)
T 3odt_A          181 ----------------------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG  237 (313)
T ss_dssp             ----------------------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             ----------------------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence                                  11456788999999999 9999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          415 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                       .|++++.||.|++||+.+++....+..|...|.+++|+|+++ +++++.|+.|++|+
T Consensus       238 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          238 -DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             -CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             -CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence             688999999999999999999999999999999999999998 67799999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.4e-41  Score=315.69  Aligned_cols=300  Identities=16%  Similarity=0.248  Sum_probs=247.3

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~  182 (473)
                      ..|.++|.+++|+|++++||+++.|+.|++||+.++.  ....+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            4589999999999999999999999999999999886  77788899999999999999999999999999999999887


Q ss_pred             cccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe----EEEEecCccccEEEEEecCCC-eEEE
Q 011978          183 KPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTLAVTCVKWGGDG-VIYT  256 (473)
Q Consensus       183 ~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~l~s  256 (473)
                      +... ..+..|...|.++.|+|     ++.++++++.|+.+++||+..+.    ......+|...|.+++|++++ .+++
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAP-----NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECT-----TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             eeeeeEEeecCCCceeEEEECC-----CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence            6322 23467889999999987     45789999999999999998765    233446789999999999987 6889


Q ss_pred             eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      ++.|+.|++||+...........                                                         
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~---------------------------------------------------------  182 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAP---------------------------------------------------------  182 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCC---------------------------------------------------------
T ss_pred             EcCCCCEEEEEcccccccccccc---------------------------------------------------------
Confidence            99999999999864321100000                                                         


Q ss_pred             CCceEEEEeC-CCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978          337 DDFTMFLWEP-AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR  415 (473)
Q Consensus       337 ~d~~i~iwd~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~  415 (473)
                           ..|.. .........+.+|...+.+++|+|++++|++++.|+.|++||+++++++..+..|..+|.+++|+|+++
T Consensus       183 -----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  257 (372)
T 1k8k_C          183 -----TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS  257 (372)
T ss_dssp             -----BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE
T ss_pred             -----cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCC
Confidence                 00000 001122334456788899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCC--Cce--------------------------------e------ecc-cccCCCEEEEEEe-
Q 011978          416 LLLSGSKDSTLKVWDIRT--QKL--------------------------------K------QDL-PGHADEVFAVDWS-  453 (473)
Q Consensus       416 ~l~s~s~Dg~i~iwd~~~--~~~--------------------------------~------~~~-~~h~~~i~~l~~s-  453 (473)
                      +|+++ .|+.|++||+..  ++.                                .      ..+ .+|...|++++|+ 
T Consensus       258 ~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  336 (372)
T 1k8k_C          258 LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS  336 (372)
T ss_dssp             EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE
T ss_pred             EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEec
Confidence            88887 899999999987  421                                0      223 4899999999966 


Q ss_pred             eCC---CEEEEEeCCCcEEecc
Q 011978          454 PDG---EKVASGGKDRVLKLWM  472 (473)
Q Consensus       454 ~d~---~~l~s~~~D~~i~~w~  472 (473)
                      ++|   ++|+|++.||.|++|+
T Consensus       337 ~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          337 GGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             STTTSCSEEEEEETTSEEEEEE
T ss_pred             CCCcceeeEEEecCCCceEEEE
Confidence            666   9999999999999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.7e-41  Score=316.57  Aligned_cols=290  Identities=18%  Similarity=0.322  Sum_probs=239.5

Q ss_pred             cccCCcccEEEEEECCCCCeEE-EEeC---CCeEEEEeCCCCceeEE-EcCCCCCEEEEEECCC---CCeEEEEecCCeE
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLA-SGSG---DTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSAD---GKHLVSGSKAGEL  174 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~la-t~s~---d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~d---g~~l~s~~~dg~i  174 (473)
                      .+.+|.+.|.+++|+|++..++ +|+.   |+.|++||+.++..... ..+|...|.+++|+|+   +++|++|+.||.|
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            4567999999999999997654 5555   99999999998765433 3378999999999998   6999999999999


Q ss_pred             EEeeCCCCccccccCCCcCCcEEEEEecee-ccCCCCceEEEeeCCCcEEEEECCCCe-EEEEecCccc----cEEEEE-
Q 011978          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPV-HLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTL----AVTCVK-  247 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~~~~~s~s~dg~i~iwd~~~~~-~~~~~~~h~~----~v~~~~-  247 (473)
                      ++||+.+++.....+.+|...|.++.|.+. .+++++..+++++.|+.|++||+..++ .+..+..|..    .+.++. 
T Consensus        93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF  172 (357)
T ss_dssp             EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred             EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence            999999887344567789999999988763 455677899999999999999999876 5666655544    788888 


Q ss_pred             ---ecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978          248 ---WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (473)
Q Consensus       248 ---~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (473)
                         |++++ .+++++.|+.|++||+++++....                                               
T Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------------------------------------------  205 (357)
T 3i2n_A          173 GNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-----------------------------------------------  205 (357)
T ss_dssp             ECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-----------------------------------------------
T ss_pred             EeccCCCCCEEEEEccCCeEEEEECccCceeee-----------------------------------------------
Confidence               56666 688899999999999887653211                                               


Q ss_pred             ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC---CCcEEEEEECCCcEEEEeCCCCceEEEe--
Q 011978          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVF--  398 (473)
Q Consensus       324 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp---~g~~lasgs~d~~v~lwd~~~~~~~~~~--  398 (473)
                                                       ..|...+.+++|+|   ++++|++|+.||.|++||+++++....+  
T Consensus       206 ---------------------------------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  252 (357)
T 3i2n_A          206 ---------------------------------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS  252 (357)
T ss_dssp             ---------------------------------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred             ---------------------------------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence                                             12345688999999   9999999999999999999877654444  


Q ss_pred             ---eCCccCEEEEEEecCCC-EEEEEeCCCcEEEEECCCC-------------------ceeecccccCCCEEEEEEeeC
Q 011978          399 ---RGHVGPVYQISWSADSR-LLLSGSKDSTLKVWDIRTQ-------------------KLKQDLPGHADEVFAVDWSPD  455 (473)
Q Consensus       399 ---~~h~~~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~~-------------------~~~~~~~~h~~~i~~l~~s~d  455 (473)
                         .+|...|++++|+|+++ +|++++.||.|++||++.+                   +.+..+.+|...|++++|+|+
T Consensus       253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  332 (357)
T 3i2n_A          253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD  332 (357)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred             eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence               48999999999999998 8999999999999999753                   345677889999999999999


Q ss_pred             CCEEE-EEeCCCcEEecc
Q 011978          456 GEKVA-SGGKDRVLKLWM  472 (473)
Q Consensus       456 ~~~l~-s~~~D~~i~~w~  472 (473)
                      +++|+ +++.|+.|++|+
T Consensus       333 ~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          333 KRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             STTEEEEEETTSEEEEEE
T ss_pred             CCeEEEEecCCCcEEEEE
Confidence            99998 899999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.5e-40  Score=346.70  Aligned_cols=329  Identities=21%  Similarity=0.300  Sum_probs=277.6

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ...+.+|.+.|.+++|+|++++||+++.||.|+|||+.++..+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            34567899999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecC-CC-eEEEe
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGG-DG-VIYTG  257 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~-~l~s~  257 (473)
                      +++... .+.+|...|.++.|+|     ++..+++++.||.|++||+.++ .....+.+|...|.+++|++ ++ .++++
T Consensus        86 ~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           86 TGEKVV-DFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             TCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             CCcEEE-EEecCCCCEEEEEEeC-----CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            887654 4678999999999987     4568999999999999999887 77788889999999999998 55 68899


Q ss_pred             ecCCeEEEEECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      +.||+|++||+.+++....+..+. ..+..+++++.                                  .....+++++
T Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------~~~~~l~~~~  205 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL----------------------------------PDKPYMITAS  205 (814)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS----------------------------------TTCCEEEEEC
T ss_pred             eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC----------------------------------CCCCEEEEEe
Confidence            999999999998887776665543 66777776652                                  0134689999


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC-
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR-  415 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~-  415 (473)
                      .|+.+++||..... ....+.+|...|.+++|+|++++|++++.||.|++||..+++.+..+..|...+.+++|+|+|. 
T Consensus       206 ~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  284 (814)
T 3mkq_A          206 DDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK  284 (814)
T ss_dssp             TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGG
T ss_pred             CCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCc
Confidence            99999999986543 4556678889999999999999999999999999999999999999999999999999999987 


Q ss_pred             -EEEEEeCCCcEEEEECCCCce----------e---------------------------------ecccccCCCEEEEE
Q 011978          416 -LLLSGSKDSTLKVWDIRTQKL----------K---------------------------------QDLPGHADEVFAVD  451 (473)
Q Consensus       416 -~l~s~s~Dg~i~iwd~~~~~~----------~---------------------------------~~~~~h~~~i~~l~  451 (473)
                       ++++++ |+.+.+|++.....          .                                 ..+..+...+.+++
T Consensus       285 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (814)
T 3mkq_A          285 NYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLA  363 (814)
T ss_dssp             GEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEE
T ss_pred             eEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeE
Confidence             355554 66788888754211          1                                 01122344577889


Q ss_pred             EeeCCCEEEEEeCCCcEEecc
Q 011978          452 WSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       452 ~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+|||++|++++ |+.+.+|.
T Consensus       364 ~spdg~~la~~~-~~~~~i~~  383 (814)
T 3mkq_A          364 HSPNGRFVTVVG-DGEYVIYT  383 (814)
T ss_dssp             ECTTSSEEEEEE-TTEEEEEE
T ss_pred             ECCCCCEEEEec-CCEEEEEE
Confidence            999999888888 78888885

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-43  Score=341.39  Aligned_cols=303  Identities=12%  Similarity=0.090  Sum_probs=225.9

Q ss_pred             EEEEeCCCeEEEEeCCCCcee----EEEcCCCCCEEEEEECCC------CCeEEEEecCCeEEEeeCCCCccc-------
Q 011978          123 LASGSGDTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSAD------GKHLVSGSKAGELQCWDPQTGKPS-------  185 (473)
Q Consensus       123 lat~s~d~~i~iwd~~~~~~~----~~~~~~~~~v~~l~~s~d------g~~l~s~~~dg~i~iwd~~~~~~~-------  185 (473)
                      +|+++.|++|+|||+.++...    ..+.+|.+.|.+++|+|+      +.+||+++.||+|++||+.+++..       
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~  255 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC  255 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred             hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence            344668899999999876532    235577889999999997      579999999999999999876422       


Q ss_pred             ---cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe-EEEEecCccccEEEE--EecCCC--eEEEe
Q 011978          186 ---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCV--KWGGDG--VIYTG  257 (473)
Q Consensus       186 ---~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~--~~~~~~--~l~s~  257 (473)
                         ...+.+|...|.+++|++.      ..+++|+.||+|++||++++. ....+.+|...|.++  .|++++  +|++|
T Consensus       256 ~~p~~~l~~h~~~v~sv~~s~~------~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          256 EKPSLTLSLADSLITTFDFLSP------TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             CSCSEEECCTTTCEEEEEESSS------SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             cCceEEEEcCCCCEEEEEecCC------CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence               1135689999999999862      379999999999999998764 345678999999999  567775  68999


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCc--eEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGH--WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +.|++|++||+++++....+.+|..  .|.+++++|+                                    ...++++
T Consensus       330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~------------------------------------~~~l~s~  373 (524)
T 2j04_B          330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ------------------------------------IYSYIYS  373 (524)
T ss_dssp             ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT------------------------------------TTEEEEE
T ss_pred             ccCCeEEEEECCCCCcccccccccccCcccceEeCCC------------------------------------cCeEEEe
Confidence            9999999999999887776666543  3666777664                                    2358899


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC-----CccCEEEEEE
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-----HVGPVYQISW  410 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~-----h~~~v~~v~~  410 (473)
                      +.|+++++||+..... ...+.+|...|++|+|+|+|++|++|+.|++|++||...+ .+..++.     +...|.+++|
T Consensus       374 ~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~  451 (524)
T 2j04_B          374 DGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDY  451 (524)
T ss_dssp             CSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBC
T ss_pred             CCCCcEEEEECccccc-ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEecc
Confidence            9999999999876543 3456689999999999999999999999999999998654 2222111     1225789999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECC-CCceeecccccCCCEEEEEEeeCCC---EEEEEeCCCcEEecc
Q 011978          411 SADSRLLLSGSKDSTLKVWDIR-TQKLKQDLPGHADEVFAVDWSPDGE---KVASGGKDRVLKLWM  472 (473)
Q Consensus       411 sp~g~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~~w~  472 (473)
                      +|+|..+. .. | ..++|+.. ++.....+.+|...|++|+|+|+++   ++|+|+.||+|+||.
T Consensus       452 sp~g~~~~-~~-~-~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          452 SIKDDKYR-ID-S-SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             CSSSCEEE-EC-C-CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             CCCCCeEE-cc-C-CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence            99998553 22 2 23444433 4566778899999999999999964   999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8.9e-41  Score=317.40  Aligned_cols=285  Identities=18%  Similarity=0.226  Sum_probs=237.4

Q ss_pred             cccCCcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCEEEEEECC-CCCeEEEEecCCeEEEee
Q 011978          103 TIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWD  178 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd  178 (473)
                      .+.+|.+.|.+++|+|++ ++||+|+.|+.|+|||+.++.....+.  +|...|.+++|+| ++++|++++.|+.|++||
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  147 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD  147 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence            457899999999999999 999999999999999999877666554  6999999999999 789999999999999999


Q ss_pred             CCCCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEE
Q 011978          179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIY  255 (473)
Q Consensus       179 ~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~  255 (473)
                      +.+..... ....+|...|.++.|+|     ++..+++++.|+.|++||+ .++.+..+.+|...|.+++|++++  .++
T Consensus       148 ~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  221 (383)
T 3ei3_B          148 FSGSVIQVFAKTDSWDYWYCCVDVSV-----SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMA  221 (383)
T ss_dssp             TTSCEEEEEECCCCSSCCEEEEEEET-----TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred             CCCCceEEEeccCCCCCCeEEEEECC-----CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence            98643221 11234558899999987     4568999999999999999 577888899999999999999987  588


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +++.|+.|++||+++++...                                                            
T Consensus       222 s~~~d~~i~iwd~~~~~~~~------------------------------------------------------------  241 (383)
T 3ei3_B          222 TSSVDATVKLWDLRNIKDKN------------------------------------------------------------  241 (383)
T ss_dssp             EEETTSEEEEEEGGGCCSTT------------------------------------------------------------
T ss_pred             EEeCCCEEEEEeCCCCCccc------------------------------------------------------------
Confidence            99999999999987632100                                                            


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeCCc------------
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHV------------  402 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~------------  402 (473)
                                     . .....+|...|.+++|+| ++++|++++.|+.|++||+++++....+.+|.            
T Consensus       242 ---------------~-~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (383)
T 3ei3_B          242 ---------------S-YIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA  305 (383)
T ss_dssp             ---------------C-EEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCC
T ss_pred             ---------------c-eEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEE
Confidence                           0 001113567799999999 99999999999999999999887766665543            


Q ss_pred             -----cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc--cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          403 -----GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG--HADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       403 -----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                           +.+..++|+|+|++  +++.||.|++||+.+++.+..+.+  |...+..++|+||+++|++++ |+.|++|+
T Consensus       306 ~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~  379 (383)
T 3ei3_B          306 TWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN  379 (383)
T ss_dssp             EECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             eccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence                 34556778888877  788999999999999998888876  456777789999999999997 99999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-40  Score=309.53  Aligned_cols=245  Identities=21%  Similarity=0.301  Sum_probs=204.7

Q ss_pred             CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE----EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~----~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      .|...|.+++|+|++ .|++|+.||+|+|||+.+++.+..    ..+|...|.+++|+|+|++|++|+.|++|++||+.+
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            467789999999985 688999999999999998765433    458999999999999999999999999999999999


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--CccccEEEEEecCCC--eEEEe
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDG--VIYTG  257 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~--~l~s~  257 (473)
                      ++... .+.+|...|.++.|+|..    ...|++++.|++|++||++++++...+.  .|...+.+++|++++  ++++|
T Consensus       159 ~~~~~-~~~~h~~~V~~~~~~~~~----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          159 QVVLS-SYRAHAAQVTCVAASPHK----DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             TEEEE-EECCCSSCEEEEEECSSC----TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred             CcEEE-EEcCcCCceEEEEecCCC----CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence            87654 578999999999998742    2478999999999999999998887664  456678999998754  57889


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      +.|++|++||+++++.+..+                                                            
T Consensus       234 ~~dg~v~~wd~~~~~~~~~~------------------------------------------------------------  253 (344)
T 4gqb_B          234 DENGTVSLVDTKSTSCVLSS------------------------------------------------------------  253 (344)
T ss_dssp             ETTSEEEEEESCC--CCEEE------------------------------------------------------------
T ss_pred             ccCCcEEEEECCCCcEEEEE------------------------------------------------------------
Confidence            99999999999876654433                                                            


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC-
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR-  415 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~-  415 (473)
                                         .+|...|++++|+|++ ++||+|+.|++|+|||..+++++ .+.+|.+.|++++|+|+++ 
T Consensus       254 -------------------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~  313 (344)
T 4gqb_B          254 -------------------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHS  313 (344)
T ss_dssp             -------------------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTT
T ss_pred             -------------------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCe
Confidence                               3455678899999998 58999999999999999988765 5689999999999999986 


Q ss_pred             EEEEEeCCCcEEEEECCCCce
Q 011978          416 LLLSGSKDSTLKVWDIRTQKL  436 (473)
Q Consensus       416 ~l~s~s~Dg~i~iwd~~~~~~  436 (473)
                      +|+++|.|++|++|++.+...
T Consensus       314 llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          314 LLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEEEETTSCEEEEECCC---
T ss_pred             EEEEEcCCCeEEEEECCCCCC
Confidence            577999999999999986543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-40  Score=304.12  Aligned_cols=246  Identities=20%  Similarity=0.339  Sum_probs=217.5

Q ss_pred             eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (473)
Q Consensus       143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i  222 (473)
                      ...+.+|.+.|.+++|+|++++|++++.||+|++||+.++.... .+..|...|.++.|.|     ++..+++|+.|++|
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR-SIQVTETPVRAGKFIA-----RKNWIIVGSDDFRI   79 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEG-----GGTEEEEEETTSEE
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE-EeeccCCcEEEEEEeC-----CCCEEEEECCCCEE
Confidence            34577899999999999999999999999999999999887543 4678899999999987     45689999999999


Q ss_pred             EEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (473)
Q Consensus       223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (473)
                      ++||+.+++++..+.+|...|.+++|++++ .+++|+.|++|++||++++....                          
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~--------------------------  133 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--------------------------  133 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE--------------------------
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh--------------------------
Confidence            999999999999999999999999999987 68899999999999987643211                          


Q ss_pred             CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEEC
Q 011978          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASF  380 (473)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~  380 (473)
                                                                          ..+.+|...|.+++|+| ++.+|++|+.
T Consensus       134 ----------------------------------------------------~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A          134 ----------------------------------------------------QTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             ----------------------------------------------------EEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             ----------------------------------------------------hhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence                                                                12335677899999999 6899999999


Q ss_pred             CCcEEEEeCCCCceEEEee-CCccCEEEEEEec--CCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC
Q 011978          381 DKSIKLWNGTTGKFVAVFR-GHVGPVYQISWSA--DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE  457 (473)
Q Consensus       381 d~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp--~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~  457 (473)
                      |++|++||+.++.....+. +|...+..+.|+|  ++.+|++|+.|++|++||+++++....+.+|...|.+++|+|+++
T Consensus       162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~  241 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP  241 (304)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC
Confidence            9999999998877655554 5668899999987  778999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEecc
Q 011978          458 KVASGGKDRVLKLWM  472 (473)
Q Consensus       458 ~l~s~~~D~~i~~w~  472 (473)
                      +|++|+.|++|++|+
T Consensus       242 ~l~s~s~Dg~i~iWd  256 (304)
T 2ynn_A          242 IIISGSEDGTLKIWN  256 (304)
T ss_dssp             EEEEEETTSCEEEEE
T ss_pred             EEEEEcCCCeEEEEE
Confidence            999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3e-40  Score=302.20  Aligned_cols=258  Identities=23%  Similarity=0.393  Sum_probs=200.0

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEECCC--CCeEEEEecCCeEEEee
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWD  178 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg~i~iwd  178 (473)
                      .+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.+.  +.+..+.+|..+|.+++|+++  +++|++|+.|++|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            46789999999999999999999999999999999753  566788999999999999864  88999999999999999


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--C-eEE
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--G-VIY  255 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~  255 (473)
                      +.+++..                                              .+..+.+|...|.+++|+++  + .|+
T Consensus        84 ~~~~~~~----------------------------------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~  117 (297)
T 2pm7_B           84 EENGRWS----------------------------------------------QIAVHAVHSASVNSVQWAPHEYGPMLL  117 (297)
T ss_dssp             BSSSCBC----------------------------------------------CCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             cCCCceE----------------------------------------------EEEEeecCCCceeEEEeCcCCCCcEEE
Confidence            8754311                                              01123467778899999885  4 688


Q ss_pred             EeecCCeEEEEECCCCce--eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          256 TGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      +++.|++|++||++++..  ...+.+|...|.+++++|.....                                     
T Consensus       118 s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-------------------------------------  160 (297)
T 2pm7_B          118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE-------------------------------------  160 (297)
T ss_dssp             EEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------------------------------------
T ss_pred             EEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc-------------------------------------
Confidence            999999999999876532  22334444444444443321000                                     


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc----eEEEeeCCccCEEEEE
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK----FVAVFRGHVGPVYQIS  409 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~----~~~~~~~h~~~v~~v~  409 (473)
                          ++                  .+       ...+++++||+|+.|++|++||+++++    ....+.+|.+.|.+++
T Consensus       161 ----~~------------------~~-------~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~  211 (297)
T 2pm7_B          161 ----DG------------------EH-------NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  211 (297)
T ss_dssp             --------------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             ----cc------------------cC-------CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE
Confidence                00                  00       001236899999999999999998765    5678899999999999


Q ss_pred             EecCC---CEEEEEeCCCcEEEEECCCCc---eeecc--cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          410 WSADS---RLLLSGSKDSTLKVWDIRTQK---LKQDL--PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       410 ~sp~g---~~l~s~s~Dg~i~iwd~~~~~---~~~~~--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+|++   ++||+++.|++|+|||++...   ....+  .+|...|++++|+|+|++||+++.|++|+||.
T Consensus       212 ~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          212 WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            99985   899999999999999997642   12223  56788999999999999999999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.6e-41  Score=316.90  Aligned_cols=312  Identities=19%  Similarity=0.282  Sum_probs=250.2

Q ss_pred             cccCCcccEEEEEECCC----CCeEEEEeCCCeEEEEeCCCCceeEEEc-----CCCCCEEEEEECCC----CCeEEEEe
Q 011978          103 TIAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCT-----GHKNWVLCIAWSAD----GKHLVSGS  169 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~----~~~lat~s~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~s~d----g~~l~s~~  169 (473)
                      ...+|.+.|.+++|+|+    ...+++++.++.|++||+.++..+..+.     .|...|.+++|+|+    |++|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34689999999999994    4556667777799999998776654443     36688999999999    67999999


Q ss_pred             cCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe---cCccccEEEE
Q 011978          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCV  246 (473)
Q Consensus       170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~  246 (473)
                      .||.|++||+.+++... .+.+|...|.++.|+|.    ++..+++++.||.|++||+++++.+..+   .+|...|.++
T Consensus        93 ~dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           93 SRGIIRIINPITMQCIK-HYVGHGNAINELKFHPR----DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             TTCEEEEECTTTCCEEE-EEESCCSCEEEEEECSS----CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred             CCCEEEEEEchhceEee-eecCCCCcEEEEEECCC----CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence            99999999999887654 46789999999999872    3468999999999999999999998888   7899999999


Q ss_pred             EecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978          247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (473)
Q Consensus       247 ~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
                      +|++++ .+++++.|+.|++||+++++....+..+      +.+.++.                                
T Consensus       168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~~~~--------------------------------  209 (366)
T 3k26_A          168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES------YDYNPNK--------------------------------  209 (366)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH------HTCCGGG--------------------------------
T ss_pred             EECCCCCEEEEecCCCCEEEEECCCCcccccccee------EEecCCC--------------------------------
Confidence            999987 6889999999999999887654433220      0000000                                


Q ss_pred             CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce-----------
Q 011978          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF-----------  394 (473)
Q Consensus       326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~-----------  394 (473)
                          ..+....    ...     .........+|...|.+++|+  +++|++++.|+.|++||+.+++.           
T Consensus       210 ----~~~~~~~----~~~-----~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  274 (366)
T 3k26_A          210 ----TNRPFIS----QKI-----HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN  274 (366)
T ss_dssp             ----CSSCCCC----EEE-----CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred             ----Ccccccc----eee-----ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence                0000000    000     011223445688899999998  78999999999999999887643           


Q ss_pred             ---EEEeeCCccCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCce----eeccccc--CCCEEEEEEeeCCCEEEEEe
Q 011978          395 ---VAVFRGHVGPVYQISWSAD--SRLLLSGSKDSTLKVWDIRTQKL----KQDLPGH--ADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       395 ---~~~~~~h~~~v~~v~~sp~--g~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~h--~~~i~~l~~s~d~~~l~s~~  463 (473)
                         +..+.+|...|++++|+|+  +++|++++.||.|++||+.+++.    ...+.+|  ...|++++|+|++++|++++
T Consensus       275 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  354 (366)
T 3k26_A          275 VTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC  354 (366)
T ss_dssp             EEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             hheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence               7788899999999999999  99999999999999999998753    3367777  68999999999999999999


Q ss_pred             CCCcEEecc
Q 011978          464 KDRVLKLWM  472 (473)
Q Consensus       464 ~D~~i~~w~  472 (473)
                      .|+.|++|+
T Consensus       355 ~dg~i~iwd  363 (366)
T 3k26_A          355 DDASIWRWD  363 (366)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999999996

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.3e-40  Score=311.61  Aligned_cols=288  Identities=12%  Similarity=0.110  Sum_probs=221.1

Q ss_pred             ccEEEEEECCCCCeEEEEeCCC-------eEEEEeCCCCce----------eEEEcCCCCCEEEEEECCCCCeEEEEecC
Q 011978          109 EAVLSVAFSPDGRQLASGSGDT-------TVRLWDLNTQTP----------MFKCTGHKNWVLCIAWSADGKHLVSGSKA  171 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~-------~i~iwd~~~~~~----------~~~~~~~~~~v~~l~~s~dg~~l~s~~~d  171 (473)
                      -+|++++|+||+++|++|++|.       .|++|++.....          ...+.+|+..|.+++++  ++.+++|..+
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            4799999999999999998643       599999865431          12456888889888764  5677777654


Q ss_pred             CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE----EEE-----ecCcccc
Q 011978          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----VIC-----LSGHTLA  242 (473)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~----~~~-----~~~h~~~  242 (473)
                      +..++                                     ++++.|+.+++|++.....    ...     ...+...
T Consensus        93 ~~~~l-------------------------------------~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (365)
T 4h5i_A           93 NSTKI-------------------------------------TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDY  135 (365)
T ss_dssp             CHHHH-------------------------------------HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCC
T ss_pred             CccEE-------------------------------------EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccC
Confidence            43333                                     3344455666666543211    111     1234456


Q ss_pred             EEEEEecCCCe-EE--EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978          243 VTCVKWGGDGV-IY--TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (473)
Q Consensus       243 v~~~~~~~~~~-l~--s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (473)
                      +.+++|+|||. ++  +++.|++|++||+.+++.+..+. |...|.+++++|+.                          
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg--------------------------  188 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDG--------------------------  188 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTS--------------------------
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCC--------------------------
Confidence            88999999984 43  55689999999999999888876 56679999998763                          


Q ss_pred             hhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC----cEEEEeCCCCce-
Q 011978          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK----SIKLWNGTTGKF-  394 (473)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~----~v~lwd~~~~~~-  394 (473)
                                ..+++++.++.+.+|.............+|...|.+++|+|+++++++++.|+    .+++||...+.. 
T Consensus       189 ----------~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~  258 (365)
T 4h5i_A          189 ----------KVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS  258 (365)
T ss_dssp             ----------SEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE
T ss_pred             ----------ceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec
Confidence                      35777776665555543322222334567888999999999999999999887    688899876643 


Q ss_pred             ---EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec-ccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          395 ---VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       395 ---~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                         ...+.+|..+|++++|||||++||+|+.|++|+|||+.+++.+.. +.+|...|++|+|||||++|||||.|++|+|
T Consensus       259 ~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv  338 (365)
T 4h5i_A          259 VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI  338 (365)
T ss_dssp             EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence               346778999999999999999999999999999999999998876 5899999999999999999999999999999


Q ss_pred             cc
Q 011978          471 WM  472 (473)
Q Consensus       471 w~  472 (473)
                      |.
T Consensus       339 w~  340 (365)
T 4h5i_A          339 IK  340 (365)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.9e-40  Score=320.33  Aligned_cols=288  Identities=19%  Similarity=0.271  Sum_probs=229.3

Q ss_pred             ccccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCCCcee--EEEcCCCCCEEEEEECC-CCCeEEEEecCCeEEEe
Q 011978          102 ATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCW  177 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~~~~--~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iw  177 (473)
                      ....+|...|+||+|+| ++.+||+|+.||+|+|||+.++...  ..+.+|.+.|.+|+|+| ++.+|++|+.||+|++|
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            34567899999999999 4678999999999999999876543  34568999999999998 68899999999999999


Q ss_pred             eCCCCccccc-cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eE
Q 011978          178 DPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VI  254 (473)
Q Consensus       178 d~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l  254 (473)
                      |++++..... ....+...+.++.|+|     ++..+++|+.||.|++||++. +.+..+.+|...|.+++|++++  ++
T Consensus       193 d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          193 DFKGNILRVFASSDTINIWFCSLDVSA-----SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFL  266 (435)
T ss_dssp             ETTSCEEEEEECCSSCSCCCCCEEEET-----TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred             eccCCceeEEeccCCCCccEEEEEECC-----CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEE
Confidence            9986543211 1223344566777766     567899999999999999864 5566788999999999999875  57


Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      ++|+.|++|++||+++++....                                                          
T Consensus       267 ~s~s~d~~v~iwd~~~~~~~~~----------------------------------------------------------  288 (435)
T 4e54_B          267 ATASVDQTVKIWDLRQVRGKAS----------------------------------------------------------  288 (435)
T ss_dssp             EEEETTSBCCEEETTTCCSSSC----------------------------------------------------------
T ss_pred             EEecCcceeeEEecccccccce----------------------------------------------------------
Confidence            7899999999999876532211                                                          


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc------CEEEE
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG------PVYQI  408 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~------~v~~v  408 (473)
                                        .....+|...|++++|+|+|++|++|+.|+.|++||+.+++....+..|..      .+...
T Consensus       289 ------------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
T 4e54_B          289 ------------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA  350 (435)
T ss_dssp             ------------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred             ------------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence                              011235777899999999999999999999999999999988877766542      23455


Q ss_pred             EEecCCCEEEEEe------------CCCcEEEEECCCCceeecc-cccCCCEEEE-EEeeCCCEEEEEeCCCcEEecc
Q 011978          409 SWSADSRLLLSGS------------KDSTLKVWDIRTQKLKQDL-PGHADEVFAV-DWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       409 ~~sp~g~~l~s~s------------~Dg~i~iwd~~~~~~~~~~-~~h~~~i~~l-~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .|+|++.++++++            .++.|++||+.+++.+..+ .+|...|.++ +|+|||++|++|+ |++|+||+
T Consensus       351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~  427 (435)
T 4e54_B          351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWS  427 (435)
T ss_dssp             EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECC
T ss_pred             EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEE
Confidence            6777777666654            3457999999999887665 4677888887 6999999999876 78999997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.2e-41  Score=318.29  Aligned_cols=298  Identities=14%  Similarity=0.222  Sum_probs=229.6

Q ss_pred             CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      .|.++|.+++|+|++++||+|+.|+.|++||+.++  .....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            36778999999999999999999999999999987  6667788999999999999999999999999999999998876


Q ss_pred             --cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe---EEEEecC-ccccEEEEEecCCC-eEEE
Q 011978          184 --PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSG-HTLAVTCVKWGGDG-VIYT  256 (473)
Q Consensus       184 --~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~---~~~~~~~-h~~~v~~~~~~~~~-~l~s  256 (473)
                        .....+.+|...|.++.|+|     ++..+++++.|+.|++||++.++   +...+.+ |...|.+++|++++ .+++
T Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~  163 (377)
T 3dwl_C           89 TWKQTLVLLRLNRAATFVRWSP-----NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA  163 (377)
T ss_dssp             CCCCEEECCCCSSCEEEEECCT-----TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred             ceeeeeEecccCCceEEEEECC-----CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence              12234678999999999987     45689999999999999999877   3667777 99999999999987 6889


Q ss_pred             eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      ++.|++|++||+..+.........                                                        
T Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------------------------------  187 (377)
T 3dwl_C          164 GCADRKAYVLSAYVRDVDAKPEAS--------------------------------------------------------  187 (377)
T ss_dssp             EESSSCEEEEEECCSSCC-CCCSC--------------------------------------------------------
T ss_pred             EeCCCEEEEEEEEecccCCCcccc--------------------------------------------------------
Confidence            999999999998754321110000                                                        


Q ss_pred             CCceEEEEeCCC-CCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce----EEEeeCCccCEEEEEEe
Q 011978          337 DDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQISWS  411 (473)
Q Consensus       337 ~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~----~~~~~~h~~~v~~v~~s  411 (473)
                            .|.... .......+ +|...|.+++|+|++++|++|+.|+.|++||+.+++.    +..+.+|..+|.+++|+
T Consensus       188 ------~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (377)
T 3dwl_C          188 ------VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA  260 (377)
T ss_dssp             ------SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE
T ss_pred             ------ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc
Confidence                  000000 00011223 7888999999999999999999999999999999887    78889999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCc--ee--------------------------------------------------ec
Q 011978          412 ADSRLLLSGSKDSTLKVWDIRTQK--LK--------------------------------------------------QD  439 (473)
Q Consensus       412 p~g~~l~s~s~Dg~i~iwd~~~~~--~~--------------------------------------------------~~  439 (473)
                      |++++|++++.|+.+ +|+.....  ..                                                  ..
T Consensus       261 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  339 (377)
T 3dwl_C          261 NESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSL  339 (377)
T ss_dssp             ETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCC
T ss_pred             CCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence            999999999876655 66654211  00                                                  00


Q ss_pred             ccccCCCEEEEEEeeCC-C---EEEEEeCCCcEEecc
Q 011978          440 LPGHADEVFAVDWSPDG-E---KVASGGKDRVLKLWM  472 (473)
Q Consensus       440 ~~~h~~~i~~l~~s~d~-~---~l~s~~~D~~i~~w~  472 (473)
                      ...|...|+++.+.++. .   .|+|+|.||.|++|+
T Consensus       340 ~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd  376 (377)
T 3dwl_C          340 PTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT  376 (377)
T ss_dssp             SSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred             CccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence            12388999999976554 3   599999999999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-38  Score=296.04  Aligned_cols=282  Identities=22%  Similarity=0.404  Sum_probs=244.8

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce---eEEEc--CCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~---~~~~~--~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      .+|...|.+++|+|++++|++++ ||.|++||+.++..   ...+.  .|...|.+++|+|++++|++++.||.|++||+
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            47999999999999999999998 99999999987542   23333  78999999999999999999999999999999


Q ss_pred             CCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEe
Q 011978          180 QTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (473)
Q Consensus       180 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~  257 (473)
                      .+++. ....+..|...+.++.|+|     ++..+++++.|+.|++||+++++.+..+.+|...|.+++|++++ .++++
T Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  201 (337)
T 1gxr_A          127 AAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG  201 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcceeeecccCCCceEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE
Confidence            88763 2234677888999999987     45689999999999999999999999999999999999999987 68899


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      +.|+.|++||+++++.+..+. +...+.+++++++                                    ...+++++.
T Consensus       202 ~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~------------------------------------~~~l~~~~~  244 (337)
T 1gxr_A          202 GLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT------------------------------------GEWLAVGME  244 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT------------------------------------SSEEEEEET
T ss_pred             ecCCcEEEEECCCCceEeeec-CCCceEEEEECCC------------------------------------CCEEEEEcC
Confidence            999999999999998877664 5566788877764                                    236889999


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL  417 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l  417 (473)
                      ++.+++||.....  ......|...+.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|
T Consensus       245 ~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l  321 (337)
T 1gxr_A          245 SSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             TSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEE
T ss_pred             CCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEE
Confidence            9999999987543  4567788999999999999999999999999999999999887554 478899999999999999


Q ss_pred             EEEeCCCcEEEEECC
Q 011978          418 LSGSKDSTLKVWDIR  432 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~  432 (473)
                      ++++.||.|++||+.
T Consensus       322 ~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          322 VTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEETTSCEEEEEEE
T ss_pred             EEecCCCeEEEEEEe
Confidence            999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.8e-39  Score=298.68  Aligned_cols=246  Identities=24%  Similarity=0.432  Sum_probs=217.6

Q ss_pred             eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (473)
Q Consensus       142 ~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~  221 (473)
                      ....+.+|...|.+++|+||+++|++|+.||+|++||..+++... .+..|...|.++.|+|     ++..+++++.|+.
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~s~~~d~~  120 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAP-----SGNYVACGGLDNI  120 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-EEECSSSCEEEEEECT-----TSSEEEEEETTCE
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-EeecCCccEEEEEECC-----CCCEEEEEeCCCe
Confidence            345678999999999999999999999999999999998877543 4567889999999987     4578999999999


Q ss_pred             EEEEECCCC----eEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeee
Q 011978          222 ARIWDVSLR----KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT  297 (473)
Q Consensus       222 i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  297 (473)
                      +++||+.++    .....+.+|...|.++.|.+++.+++++.|++|++||+.+++.+..+                    
T Consensus       121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~--------------------  180 (340)
T 1got_B          121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF--------------------  180 (340)
T ss_dssp             EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred             EEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEE--------------------
Confidence            999999865    45667889999999999999999999999999999999877654332                    


Q ss_pred             ccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE
Q 011978          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS  377 (473)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las  377 (473)
                                                                                 .+|...|.+++|+|++++|++
T Consensus       181 -----------------------------------------------------------~~h~~~v~~~~~~~~~~~l~s  201 (340)
T 1got_B          181 -----------------------------------------------------------TGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             -----------------------------------------------------------CCCSSCEEEEEECTTSSEEEE
T ss_pred             -----------------------------------------------------------cCCCCceEEEEECCCCCEEEE
Confidence                                                                       245567889999999999999


Q ss_pred             EECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc--ccCCCEEEEEEeeC
Q 011978          378 ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP--GHADEVFAVDWSPD  455 (473)
Q Consensus       378 gs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~s~d  455 (473)
                      |+.|++|++||+++++++..+.+|...|++++|+|++++|++|+.||+|++||++.++....+.  .+...|.+++|+|+
T Consensus       202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence            9999999999999999999999999999999999999999999999999999999887665543  23357999999999


Q ss_pred             CCEEEEEeCCCcEEecc
Q 011978          456 GEKVASGGKDRVLKLWM  472 (473)
Q Consensus       456 ~~~l~s~~~D~~i~~w~  472 (473)
                      |++|++|+.|+.|++|+
T Consensus       282 g~~l~~g~~d~~i~vwd  298 (340)
T 1got_B          282 GRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             SSEEEEEETTSEEEEEE
T ss_pred             CCEEEEECCCCeEEEEE
Confidence            99999999999999996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-39  Score=304.06  Aligned_cols=275  Identities=15%  Similarity=0.186  Sum_probs=239.3

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeC
Q 011978          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP  179 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~  179 (473)
                      ..+|.+.|.+++|+|++++|++++.|+.|++||+.++.   +.....+|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            35799999999999999999999999999999998776   3444568999999999999999 9999999999999999


Q ss_pred             -CCCccccccCCC--cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC---------CeEEEEecCccccEEEEE
Q 011978          180 -QTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---------RKCVICLSGHTLAVTCVK  247 (473)
Q Consensus       180 -~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~~~  247 (473)
                       .+++.  ..+.+  |...|.++.|.|      ...+++++.|+.|++||+++         ++++..+. |...|.+++
T Consensus        87 ~~~~~~--~~~~~~~~~~~v~~l~~~~------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  157 (342)
T 1yfq_A           87 IGSPSF--QALTNNEANLGICRICKYG------DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD  157 (342)
T ss_dssp             SSSSSE--EECBSCCCCSCEEEEEEET------TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred             ccCCce--EeccccCCCCceEEEEeCC------CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence             87765  34667  999999999987      25899999999999999987         66555555 888999999


Q ss_pred             ecCCCeEEEeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccC
Q 011978          248 WGGDGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (473)
Q Consensus       248 ~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (473)
                      |++++ +++++.|+.|++||+++ +....                                                   
T Consensus       158 ~~~~~-l~~~~~d~~i~i~d~~~~~~~~~---------------------------------------------------  185 (342)
T 1yfq_A          158 TNSSR-LIVGMNNSQVQWFRLPLCEDDNG---------------------------------------------------  185 (342)
T ss_dssp             ECSSE-EEEEESTTEEEEEESSCCTTCCC---------------------------------------------------
T ss_pred             ecCCc-EEEEeCCCeEEEEECCccccccc---------------------------------------------------
Confidence            99887 88999999999999876 43210                                                   


Q ss_pred             CCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCC------ceEEEee
Q 011978          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG------KFVAVFR  399 (473)
Q Consensus       327 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~------~~~~~~~  399 (473)
                                                ......|...+.+++|+| +++++++|+.||.|++|++...      +....++
T Consensus       186 --------------------------~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  239 (342)
T 1yfq_A          186 --------------------------TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             --------------------------EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             --------------------------eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence                                      011123455689999999 9999999999999999999877      7788888


Q ss_pred             CCcc---------CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc-CCCEEEEEEeeCCCEEEEEeCCCc
Q 011978          400 GHVG---------PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-ADEVFAVDWSPDGEKVASGGKDRV  467 (473)
Q Consensus       400 ~h~~---------~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h-~~~i~~l~~s~d~~~l~s~~~D~~  467 (473)
                      .|..         .|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++  |++++|++++.|+.
T Consensus       240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            8865         9999999999999999999999999999999999999998 99999999  99999999999998

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.5e-38  Score=304.29  Aligned_cols=330  Identities=18%  Similarity=0.294  Sum_probs=238.5

Q ss_pred             ccccccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCCCceeEEE-------------cCCCCCEEEEEECC-CCCe
Q 011978          100 CSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKC-------------TGHKNWVLCIAWSA-DGKH  164 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~~~~~~~-------------~~~~~~v~~l~~s~-dg~~  164 (473)
                      ....+.+|.+.|.+++|+| ++++||+|+.||.|++||+.++......             .+|...|.+++|+| ++.+
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            3445678999999999999 9999999999999999999876543322             25999999999999 7789


Q ss_pred             EEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEE
Q 011978          165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT  244 (473)
Q Consensus       165 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~  244 (473)
                      |++++.||.|++||+.+++....  ..+...+..+.+.|..  .....+++++.|+.|++||+.+++.+..+.+|...|.
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~  190 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADV--FNFEETVYSHHMSPVS--TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL  190 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEECSSC--SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred             EEEEeCCCeEEEeeCCCCcccee--ccCCCceeeeEeecCC--CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence            99999999999999998875432  2366778888888743  3445899999999999999999999999999999999


Q ss_pred             EEEecCCC--eEEEeecCCeEEEEECCCCc-eeeee---------------eccCceEEEEEecccceeeeccccCCCcc
Q 011978          245 CVKWGGDG--VIYTGSQDCTIKVWETTQGK-LIREL---------------KGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (473)
Q Consensus       245 ~~~~~~~~--~l~s~~~d~~i~~wd~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  306 (473)
                      +++|++++  .+++++.||.|++||++++. .+..+               ..|...|.+++++++              
T Consensus       191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------  256 (408)
T 4a11_B          191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD--------------  256 (408)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT--------------
T ss_pred             EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC--------------
Confidence            99999987  48899999999999998765 33333               456777888877764              


Q ss_pred             cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee----cCcccceeEEEECCCCcEEEEEECCC
Q 011978          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNHVYFSPDGQWVASASFDK  382 (473)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~v~~sp~g~~lasgs~d~  382 (473)
                                            ...+++++.|+.+++||+..........    ......+........+..+++++.|+
T Consensus       257 ----------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (408)
T 4a11_B          257 ----------------------GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS  314 (408)
T ss_dssp             ----------------------SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred             ----------------------CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence                                  3468999999999999987654322111    01111122222334456677778899


Q ss_pred             cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEee-CCCEEEE
Q 011978          383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP-DGEKVAS  461 (473)
Q Consensus       383 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~-d~~~l~s  461 (473)
                      .|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+.....+..   ...+.+ +...+.+
T Consensus       315 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  391 (408)
T 4a11_B          315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSS  391 (408)
T ss_dssp             EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------
T ss_pred             EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecc
Confidence            999999999999999999999999999999999999999999999999998876654433221   122232 3345567


Q ss_pred             EeCCCcEEecc
Q 011978          462 GGKDRVLKLWM  472 (473)
Q Consensus       462 ~~~D~~i~~w~  472 (473)
                      .+.|+.+++|.
T Consensus       392 ~~~~~~~~~W~  402 (408)
T 4a11_B          392 SDEEGGTSAWS  402 (408)
T ss_dssp             -----------
T ss_pred             cCccCceeecC
Confidence            88899999996

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.8e-38  Score=305.10  Aligned_cols=276  Identities=29%  Similarity=0.526  Sum_probs=234.3

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE--cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      .+.|+||++ ..||+|. |++|+|||..+++....+  .+|...|++|+|+|||++|++|+.||.|++||+.+++... .
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~-~  184 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-N  184 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-E
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE-E
Confidence            567999976 4777765 899999999998766544  5788899999999999999999999999999999987654 4


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEE
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW  266 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~w  266 (473)
                      +.+|...+.++.+.+       ..+++|+.|+.+++||.... ..+..+.+|...+.++.|.+++ .+++++.|+.+++|
T Consensus       185 ~~~h~~~v~~~s~~~-------~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~  257 (420)
T 4gga_A          185 MTSHSARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  257 (420)
T ss_dssp             ECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EeCCCCceEEEeeCC-------CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence            678999999988754       57999999999999998864 4566788999999999999887 58899999999999


Q ss_pred             ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  346 (473)
                      +..+++...                                                                       
T Consensus       258 ~~~~~~~~~-----------------------------------------------------------------------  266 (420)
T 4gga_A          258 PSAPGEGGW-----------------------------------------------------------------------  266 (420)
T ss_dssp             ESSCCSSCS-----------------------------------------------------------------------
T ss_pred             eeccccccc-----------------------------------------------------------------------
Confidence            987653211                                                                       


Q ss_pred             CCCCCCeeeecCcccceeEEEECCCC-cEEEEE--ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe--
Q 011978          347 AVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS--  421 (473)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasg--s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s--  421 (473)
                          ........|...|.+++|+|++ .+++++  +.|++|++||+.++++...+..| ..+.++.|+|+++.+++++  
T Consensus       267 ----~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~  341 (420)
T 4gga_A          267 ----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF  341 (420)
T ss_dssp             ----CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECT
T ss_pred             ----eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEec
Confidence                1112234566789999999965 455554  57999999999999999888765 4789999999999988765  


Q ss_pred             CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          422 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       422 ~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .|+.|+|||+.+++.+.++.+|.+.|++++|+|||++|+||+.|++|+||+
T Consensus       342 ~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            799999999999999999999999999999999999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-38  Score=294.49  Aligned_cols=251  Identities=25%  Similarity=0.460  Sum_probs=216.1

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ...+.+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~  137 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK  137 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            45678999999999999999999999999999999999999988999999999999999999999999999999999997


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccC-CCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLN-APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~  258 (473)
                      ... . ..+.+|...|.++.|.|.... .+...+++++.|+.|++||++..+....+.+|...|.+++|++++ .|++|+
T Consensus       138 ~~~-~-~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~  215 (319)
T 3frx_A          138 GQC-L-ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG  215 (319)
T ss_dssp             SCE-E-EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCe-E-EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe
Confidence            543 2 346789999999999885432 234579999999999999999999999999999999999999988 588999


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|++|++||+.+++.+..+..                                                           
T Consensus       216 ~dg~i~iwd~~~~~~~~~~~~-----------------------------------------------------------  236 (319)
T 3frx_A          216 KDGEIMLWNLAAKKAMYTLSA-----------------------------------------------------------  236 (319)
T ss_dssp             TTCEEEEEETTTTEEEEEEEC-----------------------------------------------------------
T ss_pred             CCCeEEEEECCCCcEEEEecC-----------------------------------------------------------
Confidence            999999999988765443221                                                           


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee--------CCccCEEEEEE
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--------GHVGPVYQISW  410 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~--------~h~~~v~~v~~  410 (473)
                                           ...|.+++|+|++.+|++++.+ .+++|++..+..+..+.        .|...+.+++|
T Consensus       237 ---------------------~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  294 (319)
T 3frx_A          237 ---------------------QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW  294 (319)
T ss_dssp             ---------------------CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE
T ss_pred             ---------------------CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEE
Confidence                                 1347889999999999998865 59999998877766654        34567999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCC
Q 011978          411 SADSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       411 sp~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                      +|||++|++|+.||.|++||+.+.
T Consensus       295 spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          295 SADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCCEEEEeecCceEEEEEEeec
Confidence            999999999999999999998753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-39  Score=308.83  Aligned_cols=312  Identities=20%  Similarity=0.339  Sum_probs=243.5

Q ss_pred             eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeC----CCCcc------cc---ccCCC-----
Q 011978          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP----QTGKP------SG---NPLSG-----  191 (473)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~----~~~~~------~~---~~~~~-----  191 (473)
                      .+.+|++...........|...|.+++|+|+|+ +|++|+.||.|++|++    .+++.      ..   ..+.+     
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG  105 (425)
T ss_dssp             --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred             ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence            456788876665555556778999999999999 9999999999999999    87762      11   12222     


Q ss_pred             -cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECC
Q 011978          192 -HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT  269 (473)
Q Consensus       192 -~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~  269 (473)
                       |...|.++.|+|     ++.++++++.||.|++|| .+++.+..+.+|...|.+++|++++ .+++++.|+.|++||+.
T Consensus       106 ~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          106 KTTNQVTCLAWSH-----DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             --CBCEEEEEECT-----TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             CCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence             677999999987     457899999999999999 6778888899999999999999987 58899999999999999


Q ss_pred             CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978          270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (473)
Q Consensus       270 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  349 (473)
                      +++.+..+..+......+.....        ...+..              ...+.-.....+++++.|+.+++||....
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--------------~~~~~~~~~~~~~~~~~~g~i~~~d~~~~  237 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENH--------SGDGSL--------------GVDVEWVDDDKFVIPGPKGAIFVYQITEK  237 (425)
T ss_dssp             TTEEEEEECCC-----------------------CCC--------------BSCCEEEETTEEEEECGGGCEEEEETTCS
T ss_pred             CCcEEEEeeccccCccceeeccc--------cCCcce--------------eeEEEEcCCCEEEEEcCCCeEEEEEcCCC
Confidence            99888877665443111100000        000000              00000011346889999999999998754


Q ss_pred             CCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011978          350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVW  429 (473)
Q Consensus       350 ~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iw  429 (473)
                       .....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.|+.|++|
T Consensus       238 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~  315 (425)
T 1r5m_A          238 -TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW  315 (425)
T ss_dssp             -SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred             -ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence             3445667889999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             ECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          430 DIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       430 d~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+.+++....+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus       316 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~  358 (425)
T 1r5m_A          316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD  358 (425)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence            9999999888889999999999999999999999999999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.7e-40  Score=301.50  Aligned_cols=262  Identities=23%  Similarity=0.344  Sum_probs=196.0

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECC--CCCeEEEEecCCeEEEee
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD  178 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iwd  178 (473)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.  .+..+.+|...|.+++|++  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            457899999999999999999999999999999998764  3567889999999999986  488999999999999998


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--C-eEE
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--G-VIY  255 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~  255 (473)
                      +++++.                                              .....+.+|...|.+++|+++  + .|+
T Consensus        88 ~~~~~~----------------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~la  121 (316)
T 3bg1_A           88 EENGTW----------------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILA  121 (316)
T ss_dssp             CSSSCC----------------------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEE
T ss_pred             CCCCcc----------------------------------------------eEEEEccCCCCceEEEEECCCCCCcEEE
Confidence            765421                                              112234578888999999886  4 689


Q ss_pred             EeecCCeEEEEECCCCce---eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          256 TGSQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                      +|+.|++|++||++.+..   ...+.+|...+.++.++++...                                  ..+
T Consensus       122 sgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----------------------------------~~~  167 (316)
T 3bg1_A          122 CGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP----------------------------------GSL  167 (316)
T ss_dssp             EECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-------------------------------------
T ss_pred             EEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC----------------------------------ccc
Confidence            999999999999876532   2223344444444444332100                                  000


Q ss_pred             EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC---ceEEEeeCCccCEEEEE
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---KFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~---~~~~~~~~h~~~v~~v~  409 (473)
                      +           +..         .+        ...+++++|++|+.|++|++||.+.+   +++..+.+|.+.|.+++
T Consensus       168 ~-----------~~~---------~~--------~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~  219 (316)
T 3bg1_A          168 I-----------DHP---------SG--------QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA  219 (316)
T ss_dssp             --------------C---------CS--------CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred             c-----------ccc---------cc--------cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence            0           000         00        00123678999999999999999755   46778899999999999


Q ss_pred             EecCC----CEEEEEeCCCcEEEEECCCCc----eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          410 WSADS----RLLLSGSKDSTLKVWDIRTQK----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       410 ~sp~g----~~l~s~s~Dg~i~iwd~~~~~----~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+|++    ++||+++.|++|++||+.+..    ....+.+|...|++++|+|++++||+++.|++|+||.
T Consensus       220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            99987    899999999999999997621    1234567889999999999999999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-39  Score=313.40  Aligned_cols=290  Identities=19%  Similarity=0.314  Sum_probs=247.6

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC----CceeEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEeeC
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~----~~~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~  179 (473)
                      .+|...|.+++|+|++++|++|+.|+.|++||+.+    ......+.+|...|.+++|+|+ +++|++++.||.|++||+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            36899999999999999999999999999999987    3467778899999999999998 899999999999999999


Q ss_pred             CCCc------ccc--ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc------cccEEE
Q 011978          180 QTGK------PSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH------TLAVTC  245 (473)
Q Consensus       180 ~~~~------~~~--~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h------~~~v~~  245 (473)
                      .+++      ...  ....+|...|.++.|+|.    ....+++++.|+.|++||+++++.+..+..|      ...|.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQS----LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSS----CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCC----CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence            8876      221  124678899999999873    1468999999999999999999998888776      788999


Q ss_pred             EEecCCC--eEEEeecCC---eEEEEECCCC-ceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          246 VKWGGDG--VIYTGSQDC---TIKVWETTQG-KLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       246 ~~~~~~~--~l~s~~~d~---~i~~wd~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      ++|++++  .+++++.|+   .|++||++++ ..+..+. +|...|.++++++.                          
T Consensus       220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------------  273 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ--------------------------  273 (416)
T ss_dssp             EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS--------------------------
T ss_pred             EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC--------------------------
Confidence            9999986  688999998   9999999986 5677777 89999999998762                          


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEE
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAV  397 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~  397 (473)
                               ....+++++.|+.+++||+... .....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++....
T Consensus       274 ---------~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          274 ---------DEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             ---------CSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred             ---------CCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence                     1346899999999999998654 4456677899999999999999 8999999999999999987653221


Q ss_pred             ee-----------------------------------CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978          398 FR-----------------------------------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       398 ~~-----------------------------------~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                      ..                                   .|..++.+++|+|||++|++++.|++|+||++.+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          344 EQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             C----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             cccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence            11                                   15677889999999999999999999999998763

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.1e-38  Score=296.09  Aligned_cols=273  Identities=22%  Similarity=0.363  Sum_probs=230.0

Q ss_pred             CcccEEEEEEEece----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC----
Q 011978           77 SVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----  140 (473)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~----  140 (473)
                      +...+..+.+.|..          ..+++..  ......+..|...|.+++|+|+|..||+|+.|+.+++|++...    
T Consensus        63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~  142 (354)
T 2pbi_B           63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN  142 (354)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred             CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc
Confidence            44556677776643          3344432  3344566789999999999999999999999999999998643    


Q ss_pred             --ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC
Q 011978          141 --TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (473)
Q Consensus       141 --~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~  218 (473)
                        .....+.+|...|.+++|+|++..|++++.|++|++||+++++... .+.+|...|.++.|.|.   .++..|++|+.
T Consensus       143 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~---~~g~~l~sgs~  218 (354)
T 2pbi_B          143 MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ-SFHGHGADVLCLDLAPS---ETGNTFVSGGC  218 (354)
T ss_dssp             SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECCC---SSCCEEEEEET
T ss_pred             ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEEeC---CCCCEEEEEeC
Confidence              2345567899999999999999999999999999999999887543 46789999999998763   23568999999


Q ss_pred             CCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeee
Q 011978          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT  297 (473)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  297 (473)
                      ||+|++||+++++++..+.+|...|.+++|+|++ .+++|+.|++|++||+++++.+..+..+                 
T Consensus       219 Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~-----------------  281 (354)
T 2pbi_B          219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE-----------------  281 (354)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-----------------
T ss_pred             CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-----------------
Confidence            9999999999999999999999999999999987 6889999999999999876543221100                 


Q ss_pred             ccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE
Q 011978          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS  377 (473)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las  377 (473)
                                                                                  .+...+.+++|+|+|++|++
T Consensus       282 ------------------------------------------------------------~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          282 ------------------------------------------------------------SIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             ------------------------------------------------------------TCCSCEEEEEECTTSSEEEE
T ss_pred             ------------------------------------------------------------CcccceeEEEEeCCCCEEEE
Confidence                                                                        11234778999999999999


Q ss_pred             EECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978          378 ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD  430 (473)
Q Consensus       378 gs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd  430 (473)
                      |+.|+.|++||+.+++.+..+.+|.+.|++++|+|||++|++|+.||+|++|+
T Consensus       302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999999999999999999999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.9e-39  Score=313.37  Aligned_cols=291  Identities=15%  Similarity=0.320  Sum_probs=233.3

Q ss_pred             CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc-----------eeEEEcCCC------------CCEEEEEECCCC
Q 011978          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHK------------NWVLCIAWSADG  162 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~l~~s~dg  162 (473)
                      .|.+.|.+++|+|+|++||+|+.||.|+|||+.++.           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            478899999999999999999999999999998766           366778998            889999999998


Q ss_pred             --CeEEEEecCCeEEEeeCCCCccc---------------------------------------cccCCCcCCcEEEEEe
Q 011978          163 --KHLVSGSKAGELQCWDPQTGKPS---------------------------------------GNPLSGHKKWITGISW  201 (473)
Q Consensus       163 --~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~i~~  201 (473)
                        .+|++++.|+.|++||+.++...                                       .....+|...|.++.|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998764321                                       0124679999999999


Q ss_pred             ceeccCCCCceEEEeeCCCcEEEEECCC-CeEEE-------EecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCC
Q 011978          202 EPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVI-------CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG  271 (473)
Q Consensus       202 ~~~~~~~~~~~~~s~s~dg~i~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~  271 (473)
                      +|     ++..+++| .|+.|++||+.. ++++.       .+.+|...|.+++|++++  .+++|+.|+.|++||++++
T Consensus       186 ~~-----~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          186 NS-----DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             CT-----TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred             cC-----CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence            87     45688888 899999999984 44444       256899999999999986  6899999999999999887


Q ss_pred             ce----eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978          272 KL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (473)
Q Consensus       272 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  347 (473)
                      +.    +..+..|...                                                                
T Consensus       260 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  275 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDP----------------------------------------------------------------  275 (447)
T ss_dssp             SSSCTTCEEECCC-------------------------------------------------------------------
T ss_pred             ccccceeeEeccCCCc----------------------------------------------------------------
Confidence            65    3333322110                                                                


Q ss_pred             CCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC-CceEEEeeCCccC---------------EEEEEEe
Q 011978          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGP---------------VYQISWS  411 (473)
Q Consensus       348 ~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~-~~~~~~~~~h~~~---------------v~~v~~s  411 (473)
                         .....+.+|...|.+++|+|+|++|++++. +.|++||+++ ++++..+.+|...               +..++|+
T Consensus       276 ---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s  351 (447)
T 3dw8_B          276 ---SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN  351 (447)
T ss_dssp             -----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC
T ss_pred             ---cccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEEC
Confidence               001123345668999999999999999999 9999999997 8888888888642               3349999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCceeeccc---------------------------------ccCCCEEEEEEeeCCCE
Q 011978          412 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLP---------------------------------GHADEVFAVDWSPDGEK  458 (473)
Q Consensus       412 p~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------------------------------~h~~~i~~l~~s~d~~~  458 (473)
                      |++++|++|+.||.|++||+.+++... +.                                 .+...|..++|+|++++
T Consensus       352 ~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~  430 (447)
T 3dw8_B          352 GSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENI  430 (447)
T ss_dssp             TTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSE
T ss_pred             CCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCE
Confidence            999999999999999999998876542 11                                 23457889999999999


Q ss_pred             EEEEeCCCcEEecc
Q 011978          459 VASGGKDRVLKLWM  472 (473)
Q Consensus       459 l~s~~~D~~i~~w~  472 (473)
                      ||+++.|+ +.+|.
T Consensus       431 la~~~~~~-~~~~~  443 (447)
T 3dw8_B          431 IAVATTNN-LYIFQ  443 (447)
T ss_dssp             EEEECSSC-EEEEE
T ss_pred             EEEEecce-eeeec
Confidence            99999887 56664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-38  Score=303.34  Aligned_cols=279  Identities=24%  Similarity=0.462  Sum_probs=236.3

Q ss_pred             ccCCcccEE--EEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          104 IAGHTEAVL--SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       104 ~~gh~~~V~--~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ..+|.+.+.  +++|+  +..+++++.|+.|++||+.++.....+.. |...|.+++|+|++++|++|+.||.|++||+.
T Consensus        87 ~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           87 APGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             CTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            346766644  45555  46688899999999999999887666554 88999999999999999999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC-CCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~  258 (473)
                      +++... .+.+|...|.++.|.+       ..+++++.||.|++||++ ....+..+.+|...|.+++|++++ .+++|+
T Consensus       165 ~~~~~~-~~~~~~~~v~~~~~~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          165 SQTKLR-TMAGHQARVGCLSWNR-------HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             TCCEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCeEEE-EecCCCCceEEEEECC-------CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            887554 4568999999999843       589999999999999998 567788889999999999999987 688999


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|+.|++||+++++.+..+                                                             
T Consensus       237 ~d~~v~iwd~~~~~~~~~~-------------------------------------------------------------  255 (401)
T 4aez_A          237 NDNVVQIWDARSSIPKFTK-------------------------------------------------------------  255 (401)
T ss_dssp             TTSCEEEEETTCSSEEEEE-------------------------------------------------------------
T ss_pred             CCCeEEEccCCCCCccEEe-------------------------------------------------------------
Confidence            9999999999875543322                                                             


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEE--CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR  415 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs--~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~  415 (473)
                                        .+|...|.+++|+|++ .++++|+  .|+.|++||+.+++.+..+. |...|.+++|+|+++
T Consensus       256 ------------------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~  316 (401)
T 4aez_A          256 ------------------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSK  316 (401)
T ss_dssp             ------------------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred             ------------------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCC
Confidence                              2345678899999976 5666665  79999999999999988886 567899999999999


Q ss_pred             EEEEE--eCCCcEEEEECCCCcee--ecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          416 LLLSG--SKDSTLKVWDIRTQKLK--QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       416 ~l~s~--s~Dg~i~iwd~~~~~~~--~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +|+++  +.||.|++||+.+++..  ..+.+|...|.+++|+|||++|++++.|+.|++|+
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            99995  48999999999886543  45778999999999999999999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.7e-39  Score=301.32  Aligned_cols=247  Identities=18%  Similarity=0.269  Sum_probs=201.8

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee----EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~----~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw  177 (473)
                      ....+|...|.+++|+|+++ +++++.||+|+|||+.+++..    ....+|...|.+++|+|+|++|++|+.|+.|++|
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34467999999999999986 556788999999999876543    3445899999999999999999999999999999


Q ss_pred             eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--cCccccEEEEEecCCC--e
Q 011978          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG--V  253 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~--~  253 (473)
                      |+++++... .+.+|...|.++.|.|..    ...+++++.|++|++||+++++....+  ..|...+.+++|+|++  +
T Consensus       167 d~~~~~~~~-~~~~h~~~v~~v~~s~~~----~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~  241 (357)
T 4g56_B          167 DLSQKAVLK-SYNAHSSEVNCVAACPGK----DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT  241 (357)
T ss_dssp             ETTTTEEEE-EECCCSSCEEEEEECTTC----SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE
T ss_pred             ECCCCcEEE-EEcCCCCCEEEEEEccCC----CceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce
Confidence            999887554 467899999999997732    247899999999999999988766544  4567789999999864  5


Q ss_pred             EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      +++|+.|+.|++||+++++.+..+                                                        
T Consensus       242 la~g~~d~~i~~wd~~~~~~~~~~--------------------------------------------------------  265 (357)
T 4g56_B          242 FACGDETGNVSLVNIKNPDSAQTS--------------------------------------------------------  265 (357)
T ss_dssp             EEEEESSSCEEEEESSCGGGCEEE--------------------------------------------------------
T ss_pred             EEEeecccceeEEECCCCcEeEEE--------------------------------------------------------
Confidence            788999999999999876554332                                                        


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA  412 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp  412 (473)
                                             .+|...|++++|+|++ ++||+|+.|++|+|||+++++++..+ +|.+.|++|+|+|
T Consensus       266 -----------------------~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP  321 (357)
T 4g56_B          266 -----------------------AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSP  321 (357)
T ss_dssp             -----------------------CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred             -----------------------eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence                                   2345678899999987 68999999999999999999887665 7999999999999


Q ss_pred             -CCCEEEEEeCCCcEEEEECCCC
Q 011978          413 -DSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       413 -~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                       |+++|+++|.||+|++||+.+.
T Consensus       322 ~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          322 LDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCCEEEEEcCCCeEEEEECCCC
Confidence             8999999999999999999753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=286.52  Aligned_cols=277  Identities=28%  Similarity=0.488  Sum_probs=229.9

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE--cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      .++|+||+++ .||+| .|++|+|||+.+++.+..+  .+|...|.+++|+|++++|++|+.||+|++||+++++... .
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-N  104 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-E
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-E
Confidence            4679999986 67765 5999999999999876654  4788899999999999999999999999999999987654 4


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEE
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW  266 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~w  266 (473)
                      +.+|...+..+.+.+       ..+++++.++.+++|+.... ..+..+.+|...+.++.+.+++ .+++++.|++|++|
T Consensus       105 ~~~h~~~~~~~~~~~-------~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  177 (318)
T 4ggc_A          105 MTSHSARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  177 (318)
T ss_dssp             EECCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ecCccceEEEeecCC-------CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence            678888888776543       57899999999999998865 4566788999999999999877 68899999999999


Q ss_pred             ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  346 (473)
                      |+++++.....                                                                     
T Consensus       178 d~~~~~~~~~~---------------------------------------------------------------------  188 (318)
T 4ggc_A          178 PSAPGEGGWVP---------------------------------------------------------------------  188 (318)
T ss_dssp             ESSCBTTBSCC---------------------------------------------------------------------
T ss_pred             ECCCCcccccc---------------------------------------------------------------------
Confidence            99876432110                                                                     


Q ss_pred             CCCCCCeeeecCcccceeEEEECCCCcE---EEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe--
Q 011978          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQW---VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS--  421 (473)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~---lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s--  421 (473)
                            ......+...|.+++++|++..   +++++.+++|++||........... +...+..+.|+|++..+++++  
T Consensus       189 ------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~  261 (318)
T 4ggc_A          189 ------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGF  261 (318)
T ss_dssp             ------SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECT
T ss_pred             ------eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEc
Confidence                  1112234456788888886653   3466788999999999887766554 667899999999999887765  


Q ss_pred             CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978          422 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       422 ~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      .|+.|++||+.+++.+.++.+|.+.|++++|+|||++|+|||.|++|+||+.
T Consensus       262 ~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          262 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            7999999999999999999999999999999999999999999999999973

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-38  Score=294.78  Aligned_cols=250  Identities=25%  Similarity=0.476  Sum_probs=211.4

Q ss_pred             eeEEEcCCCC-CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc--cccCCCcCCcEEEEEeceeccCCCCceEEEeeC
Q 011978          142 PMFKCTGHKN-WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (473)
Q Consensus       142 ~~~~~~~~~~-~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~  218 (473)
                      .+..+.+|.. .|.+++|+|+|++|++|+.|++|++||..++...  .....+|...|.+++|+|     ++.++++++.
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----~g~~l~s~s~   81 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-----CGNYLASASF   81 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-----TSSEEEEEET
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-----CCCEEEEEEC
Confidence            3456778987 8999999999999999999999999999877532  223478999999999987     4578999999


Q ss_pred             CCcEEEEECCCC--eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978          219 DGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (473)
Q Consensus       219 dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (473)
                      |+++++||+..+  +++..+.+|...|.+++|++++ .|++|+.|++|++||+.++.....                   
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~-------------------  142 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC-------------------  142 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE-------------------
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE-------------------
Confidence            999999998876  4677889999999999999987 688999999999999875432110                   


Q ss_pred             eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE
Q 011978          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV  375 (473)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l  375 (473)
                                                                               ...+.+|...|.+++|+|++++|
T Consensus       143 ---------------------------------------------------------~~~~~~h~~~v~~~~~~p~~~~l  165 (345)
T 3fm0_A          143 ---------------------------------------------------------VSVLNSHTQDVKHVVWHPSQELL  165 (345)
T ss_dssp             ---------------------------------------------------------EEEECCCCSCEEEEEECSSSSCE
T ss_pred             ---------------------------------------------------------EEEecCcCCCeEEEEECCCCCEE
Confidence                                                                     11233566789999999999999


Q ss_pred             EEEECCCcEEEEeCCCCc--eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---------------ceee
Q 011978          376 ASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ---------------KLKQ  438 (473)
Q Consensus       376 asgs~d~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~---------------~~~~  438 (473)
                      ++|+.|++|++||..+++  +...+.+|.+.|++++|+|+|++|++++.|++|+|||....               +...
T Consensus       166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~  245 (345)
T 3fm0_A          166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC  245 (345)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred             EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence            999999999999998875  45778999999999999999999999999999999996421               1223


Q ss_pred             cccc-cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          439 DLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       439 ~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .+.+ |...|++++|+|++..|++++.|+.|++|.
T Consensus       246 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~  280 (345)
T 3fm0_A          246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ  280 (345)
T ss_dssp             EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            3444 888999999999999999999999999995

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.6e-38  Score=304.58  Aligned_cols=270  Identities=30%  Similarity=0.555  Sum_probs=237.5

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~  184 (473)
                      .+|...|.++++  ++++|++|+.||.|++||+.+++....+.+|...|.+++|  ++++|++|+.||.|++||+.+++.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            457788999887  7999999999999999999999998899999999999999  788999999999999999998876


Q ss_pred             ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE---EEecCccccEEEEEecCCCeEEEeecCC
Q 011978          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV---ICLSGHTLAVTCVKWGGDGVIYTGSQDC  261 (473)
Q Consensus       185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~l~s~~~d~  261 (473)
                      .. .+.+|...|.++.|++       ..+++|+.||.|++||+.++...   ..+.+|...|.+++|+ ...+++|+.|+
T Consensus       206 ~~-~~~~h~~~v~~l~~~~-------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg  276 (435)
T 1p22_A          206 LN-TLIHHCEAVLHLRFNN-------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDR  276 (435)
T ss_dssp             EE-EECCCCSCEEEEECCT-------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-TTEEEEEETTS
T ss_pred             EE-EEcCCCCcEEEEEEcC-------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-CCEEEEEeCCC
Confidence            54 4678999999999854       48999999999999999887654   6778999999999994 45799999999


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      .|++||+++++.+..+.+                                                              
T Consensus       277 ~i~vwd~~~~~~~~~~~~--------------------------------------------------------------  294 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNG--------------------------------------------------------------  294 (435)
T ss_dssp             EEEEEETTTCCEEEEEEC--------------------------------------------------------------
T ss_pred             eEEEEECCcCcEEEEEcC--------------------------------------------------------------
Confidence            999999988766554432                                                              


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS  421 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s  421 (473)
                                       |...+.++++  +++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+|++|+
T Consensus       295 -----------------~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~  353 (435)
T 1p22_A          295 -----------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA  353 (435)
T ss_dssp             -----------------CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred             -----------------CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence                             3345666667  4689999999999999999999999999999999999999  788999999


Q ss_pred             CCCcEEEEECCCCc---------eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          422 KDSTLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       422 ~Dg~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .||.|++||+.+++         ....+.+|...|++++|  ++++|++++.|++|++|+
T Consensus       354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence            99999999997655         67788899999999999  788999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.8e-38  Score=295.83  Aligned_cols=288  Identities=17%  Similarity=0.202  Sum_probs=235.3

Q ss_pred             ccccccCCcccEEEEEECCC---CCeEEEEeCCCeEEEEeCCC-Ccee-EEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978          100 CSATIAGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNT-QTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~---~~~lat~s~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i  174 (473)
                      ....+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +... ..+.+|...|.+++|+|++++|++++.||.|
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v  110 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA  110 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence            34567899999999999999   69999999999999999987 4444 5677899999999999999999999999999


Q ss_pred             EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeE
Q 011978          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI  254 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l  254 (473)
                      ++||+.+++...  ..+|...|.++.|.+   .+++..+++++.|+.|++||+++++.+..+..+. .+.++.+.++ .+
T Consensus       111 ~iwd~~~~~~~~--~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~  183 (368)
T 3mmy_A          111 KMWDLSSNQAIQ--IAQHDAPVKTIHWIK---APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MA  183 (368)
T ss_dssp             EEEETTTTEEEE--EEECSSCEEEEEEEE---CSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EE
T ss_pred             EEEEcCCCCcee--eccccCceEEEEEEe---CCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCC-ee
Confidence            999999887543  567999999999944   2255689999999999999999998888777665 5666666644 67


Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      ++++.|+.+++|++...........                                                       
T Consensus       184 ~~~~~~~~i~~~~~~~~~~~~~~~~-------------------------------------------------------  208 (368)
T 3mmy_A          184 VVATAERGLIVYQLENQPSEFRRIE-------------------------------------------------------  208 (368)
T ss_dssp             EEEEGGGCEEEEECSSSCEEEEECC-------------------------------------------------------
T ss_pred             EEEeCCCcEEEEEeccccchhhhcc-------------------------------------------------------
Confidence            7888999999999876432211000                                                       


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc----EEEEEECCCcEEEEeCCCC---ceEEEeeCCcc----
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ----WVASASFDKSIKLWNGTTG---KFVAVFRGHVG----  403 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~----~lasgs~d~~v~lwd~~~~---~~~~~~~~h~~----  403 (473)
                                            ..+...+.++++.++..    .+++++.|+.|++||+...   +.+..+.+|..    
T Consensus       209 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  266 (368)
T 3mmy_A          209 ----------------------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN  266 (368)
T ss_dssp             ----------------------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred             ----------------------ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence                                  00111233344443333    3999999999999999987   56777888876    


Q ss_pred             --------CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          404 --------PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       404 --------~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                              +|++++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|||++|++++.|+..+.|
T Consensus       267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~  342 (368)
T 3mmy_A          267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH  342 (368)
T ss_dssp             -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred             ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence                    79999999999999999999999999999999999999999999999999999999999998755444

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-37  Score=297.13  Aligned_cols=252  Identities=26%  Similarity=0.475  Sum_probs=211.6

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      ..|.+++|+|+|++||+|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++.... 
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-  202 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT-  202 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE-
Confidence            3599999999999999999999999999999998888999999999999999999999999999999999998875432 


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-------cCccccEEEEEecCCC-eEEEeecC
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------SGHTLAVTCVKWGGDG-VIYTGSQD  260 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~-~l~s~~~d  260 (473)
                       ..+...+..+.|.|.    ++.++++++.|+.|++||+++++.+..+       .+|...|.+++|++++ .|++|+.|
T Consensus       203 -~~~~~~v~~~~~~~~----~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d  277 (393)
T 1erj_A          203 -LSIEDGVTTVAVSPG----DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  277 (393)
T ss_dssp             -EECSSCEEEEEECST----TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             -EEcCCCcEEEEEECC----CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence             235567888888762    4568999999999999999998887766       5899999999999988 58899999


Q ss_pred             CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      ++|++||+++.........                                                             
T Consensus       278 ~~v~~wd~~~~~~~~~~~~-------------------------------------------------------------  296 (393)
T 1erj_A          278 RSVKLWNLQNANNKSDSKT-------------------------------------------------------------  296 (393)
T ss_dssp             SEEEEEEC------------------------------------------------------------------------
T ss_pred             CEEEEEECCCCCCcccccC-------------------------------------------------------------
Confidence            9999999876432211000                                                             


Q ss_pred             EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec------CC
Q 011978          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA------DS  414 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp------~g  414 (473)
                            .........+.+|...|.+++|+|++++|++|+.|+.|++||..+++.+..+.+|.+.|.+++|++      ++
T Consensus       297 ------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~  370 (393)
T 1erj_A          297 ------PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY  370 (393)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred             ------CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC
Confidence                  000011223457888999999999999999999999999999999999999999999999999986      68


Q ss_pred             CEEEEEeCCCcEEEEECCC
Q 011978          415 RLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd~~~  433 (473)
                      ++||+|+.||+|+||++..
T Consensus       371 ~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          371 NVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEEEEETTSEEEEEEEEE
T ss_pred             CEEEEECCCCcEEECcccc
Confidence            8999999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-38  Score=301.06  Aligned_cols=283  Identities=25%  Similarity=0.410  Sum_probs=231.9

Q ss_pred             CcccEEEEEEEece----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---
Q 011978           77 SVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---  141 (473)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~---  141 (473)
                      +...+..+.+.|..          .++++..  ......+.+|...|.+++|+|+|++||+|+.|+.|++||+.+..   
T Consensus        65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~  144 (380)
T 3iz6_a           65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD  144 (380)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred             cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc
Confidence            44566777776643          3345543  34556778999999999999999999999999999999986532   


Q ss_pred             ----eeEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEeeCCCCccccc----cCCCcCCcEEEEEeceeccCCCCce
Q 011978          142 ----PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSGN----PLSGHKKWITGISWEPVHLNAPCRR  212 (473)
Q Consensus       142 ----~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~~~~~  212 (473)
                          ....+.+|...|.++.|+|+ +..|++|+.|++|++||+.+++....    ...+|...|.++.|.+.    +...
T Consensus       145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~  220 (380)
T 3iz6_a          145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL----NANM  220 (380)
T ss_dssp             CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS----SCCE
T ss_pred             CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC----CCCE
Confidence                23346789999999999997 45799999999999999998875432    23679999999998763    3468


Q ss_pred             EEEeeCCCcEEEEECC-CCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978          213 FVSASKDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (473)
Q Consensus       213 ~~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  290 (473)
                      |++|+.|++|++||++ ....+..+.+|...|.+++|+|++ .+++|+.|++|++||+++++.+..+..+..        
T Consensus       221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~--------  292 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD--------  292 (380)
T ss_dssp             EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS--------
T ss_pred             EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc--------
Confidence            9999999999999998 457788889999999999999987 688999999999999998876654332110        


Q ss_pred             ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC
Q 011978          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp  370 (473)
                                                                                      ....+...+.+++|+|
T Consensus       293 ----------------------------------------------------------------~~~~~~~~v~~~~~s~  308 (380)
T 3iz6_a          293 ----------------------------------------------------------------RNDNELPIVTSVAFSI  308 (380)
T ss_dssp             ----------------------------------------------------------------SSCCSSCSCSEEEECS
T ss_pred             ----------------------------------------------------------------ccccccCceEEEEECC
Confidence                                                                            0011223578999999


Q ss_pred             CCcEEEEEECCCcEEEEeCCCCceEEEe----eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011978          371 DGQWVASASFDKSIKLWNGTTGKFVAVF----RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK  435 (473)
Q Consensus       371 ~g~~lasgs~d~~v~lwd~~~~~~~~~~----~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~  435 (473)
                      +|++|++|+.||.|++||..+++.+..+    .+|.+.|++++|+|||++|++||.||+|++|++...+
T Consensus       309 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          309 SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            9999999999999999999999888776    6899999999999999999999999999999987653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.8e-37  Score=288.54  Aligned_cols=253  Identities=23%  Similarity=0.436  Sum_probs=208.9

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ...+.+|...|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            45678999999999999999999999999999999999999888899999999999999999999999999999999987


Q ss_pred             CCcccc-ccCCCcCCcEEEEEeceecc-----CCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-e
Q 011978          181 TGKPSG-NPLSGHKKWITGISWEPVHL-----NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V  253 (473)
Q Consensus       181 ~~~~~~-~~~~~~~~~v~~i~~~~~~~-----~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~  253 (473)
                      ...... ....+|...|.++.|+|...     .+....+++++.|+.|++|| ........+.+|...|.+++|++++ .
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~  227 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY  227 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence            433221 22347889999999988542     12236899999999999999 4567777888999999999999988 5


Q ss_pred             EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      |++|+.|++|++||+.+.....                                                          
T Consensus       228 l~sgs~dg~v~iwd~~~~~~~~----------------------------------------------------------  249 (343)
T 2xzm_R          228 IATGGKDKKLLIWDILNLTYPQ----------------------------------------------------------  249 (343)
T ss_dssp             EEEEETTCEEEEEESSCCSSCS----------------------------------------------------------
T ss_pred             EEEEcCCCeEEEEECCCCcccc----------------------------------------------------------
Confidence            8899999999999984321100                                                          


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE--Eee-----------C
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA--VFR-----------G  400 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~--~~~-----------~  400 (473)
                                          ..+ .+...|.+++|+|+++++++| .|+.|++||+.+++...  .+.           +
T Consensus       250 --------------------~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (343)
T 2xzm_R          250 --------------------REF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG  307 (343)
T ss_dssp             --------------------EEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred             --------------------eee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence                                000 112348899999999988765 57789999998765433  333           6


Q ss_pred             CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978          401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       401 h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                      |...|.+++|+|+|++|++|+.||+|++|++.++
T Consensus       308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            8889999999999999999999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.1e-38  Score=298.86  Aligned_cols=305  Identities=19%  Similarity=0.279  Sum_probs=252.7

Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCCCccccccC------------CCcCC
Q 011978          128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPL------------SGHKK  194 (473)
Q Consensus       128 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~------------~~~~~  194 (473)
                      .++.+++|++..+.....+.+|...|.+++|+| ++++|++|+.||.|++||+.++.......            .+|..
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY  100 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence            345678888887777777889999999999999 99999999999999999998876443221            36999


Q ss_pred             cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC----eEEEeecCCeEEEEECCC
Q 011978          195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG----VIYTGSQDCTIKVWETTQ  270 (473)
Q Consensus       195 ~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~s~~~d~~i~~wd~~~  270 (473)
                      .|.++.|.|.    +...+++++.|+.|++||+.+++....+. +...+.++.+.+.+    .+++++.|+.|++||+.+
T Consensus       101 ~v~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B          101 SVETVQWYPH----DTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             CEEEEEECTT----CTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             cEEEEEEccC----CCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            9999999873    34589999999999999999998887775 66788899987642    688999999999999999


Q ss_pred             CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCC
Q 011978          271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (473)
Q Consensus       271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  350 (473)
                      ++.+..+..|...|.+++++++.                                   ...+++++.|+.+++||+....
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~ll~~~~~dg~i~i~d~~~~~  220 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRY-----------------------------------DYILATASADSRVKLWDVRRAS  220 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSC-----------------------------------TTEEEEEETTSCEEEEETTCSS
T ss_pred             cceeeeecCCCCcEEEEEECCCC-----------------------------------CcEEEEEcCCCcEEEEECCCCC
Confidence            99999999999999999988752                                   1248899999999999987654


Q ss_pred             CCeeee---------------cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc-----cCEEEEEE
Q 011978          351 QPKTRM---------------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-----GPVYQISW  410 (473)
Q Consensus       351 ~~~~~~---------------~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~-----~~v~~v~~  410 (473)
                      .....+               .+|...|.+++|+|++++|++++.|+.|++||+.+++....+..+.     ..+.....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (408)
T 4a11_B          221 GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS  300 (408)
T ss_dssp             CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEEC
T ss_pred             cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEe
Confidence            333322               5788899999999999999999999999999999887655443321     11222222


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          411 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       411 sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ...+..+++++.|+.|++||+.+++.+..+.+|...|++++|+|++++|++++.|+.|++|+
T Consensus       301 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~  362 (408)
T 4a11_B          301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWV  362 (408)
T ss_dssp             CSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence            33455677778899999999999999999999999999999999999999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-37  Score=286.55  Aligned_cols=250  Identities=27%  Similarity=0.438  Sum_probs=202.4

Q ss_pred             CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc--cccccCCC-cCCcEEEEEeceeccCCCCceEEEe
Q 011978          140 QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK--PSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSA  216 (473)
Q Consensus       140 ~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~s~  216 (473)
                      ...+..+.+|...|.+++|+|+  +|++|+.|++|++||+.++.  .......+ |...|.++.|+|     ++.+++++
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-----~~~~las~   76 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-----HTSLLAAG   76 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-----TSSEEEEE
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-----CCCEEEEE
Confidence            3455677899999999999987  99999999999999998753  22222134 999999999987     45689999


Q ss_pred             eCCCcEEEEECCC-------CeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEE
Q 011978          217 SKDGDARIWDVSL-------RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA  288 (473)
Q Consensus       217 s~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~  288 (473)
                      +.|++|++||+..       .+++..+.+|...|.+++|++++ .|++|+.|++|++||+.......             
T Consensus        77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~-------------  143 (330)
T 2hes_X           77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY-------------  143 (330)
T ss_dssp             ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC-------------
T ss_pred             eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe-------------
Confidence            9999999999853       45677889999999999999987 58899999999999984321000             


Q ss_pred             ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEE
Q 011978          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF  368 (473)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~  368 (473)
                                                                                    .....+.+|...|.+++|
T Consensus       144 --------------------------------------------------------------~~~~~~~~h~~~v~~v~~  161 (330)
T 2hes_X          144 --------------------------------------------------------------ECISVLQEHSQDVKHVIW  161 (330)
T ss_dssp             --------------------------------------------------------------EEEEEECCCSSCEEEEEE
T ss_pred             --------------------------------------------------------------EEEEEeccCCCceEEEEE
Confidence                                                                          001223467778999999


Q ss_pred             CCCCcEEEEEECCCcEEEEeCCCC--ceEEEeeCCccCEEEEEEecC--CCEEEEEeCCCcEEEEECCCC--------ce
Q 011978          369 SPDGQWVASASFDKSIKLWNGTTG--KFVAVFRGHVGPVYQISWSAD--SRLLLSGSKDSTLKVWDIRTQ--------KL  436 (473)
Q Consensus       369 sp~g~~lasgs~d~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~--g~~l~s~s~Dg~i~iwd~~~~--------~~  436 (473)
                      +|++++|++|+.|++|++||..++  +++..+.+|.+.|.+++|+|+  +.+|++++.|++|++||+..+        ..
T Consensus       162 ~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~  241 (330)
T 2hes_X          162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC  241 (330)
T ss_dssp             CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence            999999999999999999998776  678889999999999999998  778999999999999998754        33


Q ss_pred             eecccc-cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          437 KQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       437 ~~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ...+.+ |...|++++|++++ +|++++.|++|++|+
T Consensus       242 ~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~  277 (330)
T 2hes_X          242 EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYE  277 (330)
T ss_dssp             EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEE
T ss_pred             eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEE
Confidence            445555 88999999999765 899999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.6e-36  Score=316.30  Aligned_cols=288  Identities=23%  Similarity=0.363  Sum_probs=254.7

Q ss_pred             eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (473)
Q Consensus       143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i  222 (473)
                      ...+.+|...|.+++|+|+|++|++++.||.|++||+.+++... .+.+|...|.++.|+|     ++.++++++.||.|
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR-SIQVTETPVRAGKFIA-----RKNWIIVGSDDFRI   79 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEG-----GGTEEEEEETTSEE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE-EEecCCCcEEEEEEeC-----CCCEEEEEeCCCeE
Confidence            34567899999999999999999999999999999999887554 4668999999999998     45689999999999


Q ss_pred             EEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccc
Q 011978          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAF  300 (473)
Q Consensus       223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (473)
                      ++||+.+++.+..+.+|...|++++|++++ .+++++.||.|++||+.++ .....+.+|...|.+++++|..       
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------  152 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD-------  152 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE-------
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC-------
Confidence            999999999999999999999999999988 6889999999999999987 6677888899999999988721       


Q ss_pred             cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC--CCcEEEEE
Q 011978          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASA  378 (473)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~lasg  378 (473)
                                                  ...+++++.|+.+++||.............+...+.+++|+|  ++.+|++|
T Consensus       153 ----------------------------~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  204 (814)
T 3mkq_A          153 ----------------------------PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA  204 (814)
T ss_dssp             ----------------------------EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred             ----------------------------CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence                                        236899999999999998766555555555668899999999  99999999


Q ss_pred             ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCE
Q 011978          379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK  458 (473)
Q Consensus       379 s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~  458 (473)
                      +.||.|++||..+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++....+..|...+.+++|+|+++.
T Consensus       205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  284 (814)
T 3mkq_A          205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK  284 (814)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGG
T ss_pred             eCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999873


Q ss_pred             --EEEEeCCCcEEecc
Q 011978          459 --VASGGKDRVLKLWM  472 (473)
Q Consensus       459 --l~s~~~D~~i~~w~  472 (473)
                        +++++ |+.+.+|.
T Consensus       285 ~~~~~~~-~~~~~~~~  299 (814)
T 3mkq_A          285 NYIASGF-DNGFTVLS  299 (814)
T ss_dssp             GEEEEEE-TTEEEEEE
T ss_pred             eEEEEEe-CCCEEEEE
Confidence              55554 55565553

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-38  Score=307.86  Aligned_cols=286  Identities=12%  Similarity=0.056  Sum_probs=220.0

Q ss_pred             cccCCcccEEEEEECCC------CCeEEEEeCCCeEEEEeCCCCc-----------eeEEEcCCCCCEEEEEECCCCCeE
Q 011978          103 TIAGHTEAVLSVAFSPD------GRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHKNWVLCIAWSADGKHL  165 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~------~~~lat~s~d~~i~iwd~~~~~-----------~~~~~~~~~~~v~~l~~s~dg~~l  165 (473)
                      .+.+|.+.|.+++|+|+      +.+||+++.||+|+|||+.++.           +...+.+|...|.+++|++++ .|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence            35678899999999997      5799999999999999997653           234678899999999999864 89


Q ss_pred             EEEecCCeEEEeeCCCCccccccCCCcCCcEEEEE--eceeccCCCC-ceEEEeeCCCcEEEEECCCCeEEEEecCccc-
Q 011978          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS--WEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLSGHTL-  241 (473)
Q Consensus       166 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~--~~~~~~~~~~-~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~-  241 (473)
                      ++|+.||+|++||++++......+.+|...|.++.  |.|     ++ ..|++++.|++|++||+++++++..+.+|.. 
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-----~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~  355 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-----FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG  355 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-----TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-----CCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence            99999999999999877544445778999999994  443     33 5899999999999999998877666666653 


Q ss_pred             -cEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978          242 -AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (473)
Q Consensus       242 -~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (473)
                       .|.+++|+|++ .+++++.|++|++||++++..+..+.+|...|.+++++|+.                          
T Consensus       356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g--------------------------  409 (524)
T 2j04_B          356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH--------------------------  409 (524)
T ss_dssp             CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC--------------------------
T ss_pred             CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC--------------------------
Confidence             47899999977 68889999999999999999888899999999999998763                          


Q ss_pred             hhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee-ec-C-cccceeEEEECCCCcEEEEEECCCcEEEEeCC-CCceE
Q 011978          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-MT-G-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFV  395 (473)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~-~-~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~~~~~  395 (473)
                                ..+++|+.|+++++|++......... .. . +...+.+++|+|+++.+..  .| .+++|+.. ++.++
T Consensus       410 ----------~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~-~~~~~~~~~~g~~~  476 (524)
T 2j04_B          410 ----------PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DS-SYEVYPLTVNDVSK  476 (524)
T ss_dssp             ----------CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE--CC-CCCCCC--------
T ss_pred             ----------CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc--cC-CceecccccCCcce
Confidence                      35899999999999997542111000 00 1 1124679999999985532  22 34455443 56778


Q ss_pred             EEeeCCccCEEEEEEecCCC---EEEEEeCCCcEEEEECCC
Q 011978          396 AVFRGHVGPVYQISWSADSR---LLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       396 ~~~~~h~~~v~~v~~sp~g~---~l~s~s~Dg~i~iwd~~~  433 (473)
                      ..+.+|.++|.+|+|+|++.   .||+|+.||.|+||++..
T Consensus       477 ~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          477 AKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             eeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            88999999999999999964   999999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2e-36  Score=291.06  Aligned_cols=290  Identities=19%  Similarity=0.270  Sum_probs=239.9

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ...+.+| ..+....|+|++++||+|+.|+.|++||+.++.....+.+|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~  169 (420)
T 3vl1_A           91 SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK  169 (420)
T ss_dssp             TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            3444555 445556789999999999999999999999988877778999999999999999999999999999999999


Q ss_pred             CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC---ccccEEEEE----------
Q 011978          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVK----------  247 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~----------  247 (473)
                      +++... .+.+|...|.++.|+|     ++..+++++.|+.|++||+++++.+..+..   |...+.++.          
T Consensus       170 ~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  243 (420)
T 3vl1_A          170 DGSNPR-TLIGHRATVTDIAIID-----RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH  243 (420)
T ss_dssp             TCCCCE-EEECCSSCEEEEEEET-----TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG
T ss_pred             CCcCce-EEcCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee
Confidence            887553 4678999999999987     456899999999999999999999888864   334455544          


Q ss_pred             -----------ecCCC-eEEEeecCCeEEEEECCCCceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHH
Q 011978          248 -----------WGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (473)
Q Consensus       248 -----------~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (473)
                                 |++++ .+++|+.||.|++||+++++.+..+. .|...|.+++++++.                     
T Consensus       244 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------  302 (420)
T 3vl1_A          244 EISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN---------------------  302 (420)
T ss_dssp             GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC---------------------
T ss_pred             ecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC---------------------
Confidence                       56777 68899999999999999988777664 477889999887752                     


Q ss_pred             HHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC-cccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-
Q 011978          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-  392 (473)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~-  392 (473)
                                    ...+++++.|+.+++||+.....+...+.+ |...+.++.+ |++++|++++.|+.|++||+... 
T Consensus       303 --------------~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          303 --------------ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             --------------TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred             --------------CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence                          126899999999999999877665555555 6677888855 57899999999999999998763 


Q ss_pred             --------ceEEEeeCCccCEEEEEEecCCC---EEEEEeCCCcEEEEECCC
Q 011978          393 --------KFVAVFRGHVGPVYQISWSADSR---LLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       393 --------~~~~~~~~h~~~v~~v~~sp~g~---~l~s~s~Dg~i~iwd~~~  433 (473)
                              .....+.+|.+.|.+++|+|++.   .|++++.+|.+.+|++..
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          368 SERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence                    22234567889999999999999   777788899999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-37  Score=293.66  Aligned_cols=292  Identities=13%  Similarity=0.119  Sum_probs=233.7

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~  186 (473)
                      -...|.+++|+|||+++|+++.|++|+  |....+.+   .+|...|.+++|+|+|       .++.+.+|+.+...   
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~---   78 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFELAQQNG---   78 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEeCCCce---
Confidence            457899999999999999999999999  76655443   6899999999999998       46666666543222   


Q ss_pred             ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc-----cEEEEEecCCC-eEEEeecC
Q 011978          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-----AVTCVKWGGDG-VIYTGSQD  260 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~-~l~s~~~d  260 (473)
                      .....|...|.+++|+|     ++.++++++.||.+++||...  ++..+. |..     .|.+++|+||| .|++|+.|
T Consensus        79 ~~~~~~~~~V~~vawSP-----dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D  150 (588)
T 2j04_A           79 LLNSQPVCYPRVCKPSP-----IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED  150 (588)
T ss_dssp             SSTTSCSCCEEEEEECS-----SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred             EeecCCCCcEEEEEECC-----CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence            12225688899999998     667999999999999999544  666666 665     59999999998 58999999


Q ss_pred             CeEEEEECCCCce-------eeee----eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          261 CTIKVWETTQGKL-------IREL----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       261 ~~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      |+|++||+.++..       +..+    .+|..+|.+++++|+                                     
T Consensus       151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-------------------------------------  193 (588)
T 2j04_A          151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED-------------------------------------  193 (588)
T ss_dssp             SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-------------------------------------
T ss_pred             CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC-------------------------------------
Confidence            9999999998853       5665    567789999999875                                     


Q ss_pred             ceEEEecCCceEEEEeCCCCCCC--eeee-cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQP--KTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~--~~~~-~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~  406 (473)
                      . +++++.|+++++|+.......  ...+ .+|...|.+++|+  |++||+++ +++|++||..+++......+|.+.|.
T Consensus       194 g-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~  269 (588)
T 2j04_A          194 V-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFH  269 (588)
T ss_dssp             E-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCC
T ss_pred             c-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEE
Confidence            2 678888999999998765532  2334 4788899999999  68999997 69999999998877444448999999


Q ss_pred             EEEE--ecCCCEEEEEeCCCcEEEEECCCC-----------------------ceeecccccCCCEEEEEEeeCCCEEEE
Q 011978          407 QISW--SADSRLLLSGSKDSTLKVWDIRTQ-----------------------KLKQDLPGHADEVFAVDWSPDGEKVAS  461 (473)
Q Consensus       407 ~v~~--sp~g~~l~s~s~Dg~i~iwd~~~~-----------------------~~~~~~~~h~~~i~~l~~s~d~~~l~s  461 (473)
                      +++|  +||+..|++++.||+ ++|....-                       .....+.+ ...|++++|||||+.+|+
T Consensus       270 ~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~  347 (588)
T 2j04_A          270 IIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAI  347 (588)
T ss_dssp             EEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEE
T ss_pred             EEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEE
Confidence            9999  999999999999999 99987421                       01112222 345999999999999998


Q ss_pred             EeC
Q 011978          462 GGK  464 (473)
Q Consensus       462 ~~~  464 (473)
                      ++.
T Consensus       348 ~~~  350 (588)
T 2j04_A          348 VYD  350 (588)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1e-35  Score=288.39  Aligned_cols=282  Identities=31%  Similarity=0.539  Sum_probs=247.9

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (473)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw  177 (473)
                      .++...+.+|...|.+++|+  +..+++|+.||+|++||+.+++.+..+.+|...|.+++|+  ++.|++|+.||.|++|
T Consensus       149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~w  224 (445)
T 2ovr_B          149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVW  224 (445)
T ss_dssp             CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEE
T ss_pred             CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEE
Confidence            34566788999999999997  6799999999999999999999999999999999999995  5789999999999999


Q ss_pred             eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEe
Q 011978          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG  257 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~  257 (473)
                      |+.+++... .+.+|...|.++.|.       +..+++++.||.|++||+++++++..+.+|...|.++.| ....++++
T Consensus       225 d~~~~~~~~-~~~~~~~~v~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~  295 (445)
T 2ovr_B          225 DIETGQCLH-VLMGHVAAVRCVQYD-------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSG  295 (445)
T ss_dssp             ESSSCCEEE-EEECCSSCEEEEEEC-------SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEE
T ss_pred             ECCCCcEEE-EEcCCcccEEEEEEC-------CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEE
Confidence            999887553 467899999999872       468999999999999999999999999999999999999 34479999


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      +.|+.|++||+++++.+..+.+|...+.++.+..                                      ..+++++.
T Consensus       296 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--------------------------------------~~l~~~~~  337 (445)
T 2ovr_B          296 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--------------------------------------NILVSGNA  337 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--------------------------------------TEEEEEET
T ss_pred             eCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC--------------------------------------CEEEEEeC
Confidence            9999999999999999999998888887776532                                      36899999


Q ss_pred             CceEEEEeCCCCCCCeeeecC---cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe-----eCCccCEEEEE
Q 011978          338 DFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-----RGHVGPVYQIS  409 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~---~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~-----~~h~~~v~~v~  409 (473)
                      |+.+++||..... ....+.+   |...|.+++|+  +++|++|+.||.|++||+.+++.+..+     .+|.+.|++++
T Consensus       338 dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  414 (445)
T 2ovr_B          338 DSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR  414 (445)
T ss_dssp             TSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred             CCeEEEEECCCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE
Confidence            9999999986543 3334443   78889999996  689999999999999999999998887     46888999999


Q ss_pred             EecCCCEEEEEeCCCc----EEEEECCC
Q 011978          410 WSADSRLLLSGSKDST----LKVWDIRT  433 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~----i~iwd~~~  433 (473)
                      |+|++.+|++|+.||+    |.+||+..
T Consensus       415 ~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          415 ASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             ECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            9999999999999998    99999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-35  Score=274.09  Aligned_cols=252  Identities=29%  Similarity=0.542  Sum_probs=217.3

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      ++...+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD  135 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            44566789999999999999999999999999999999999998888999999999999999999999999999999999


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEecCCC-eEEE
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYT  256 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~l~s  256 (473)
                      +++++... .+..|...|.++.|+|     ++..+++++.|+.|++||+++++.+..+. .+...+.+++|++++ .+++
T Consensus       136 ~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  209 (312)
T 4ery_A          136 VKTGKCLK-TLPAHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  209 (312)
T ss_dssp             TTTCCEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred             CCCCEEEE-EecCCCCcEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence            99887543 4678899999999887     45689999999999999999998877654 566789999999987 5889


Q ss_pred             eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      ++.|+.|++||+++++.+..+.+|...                                                     
T Consensus       210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------------------------------------------------  236 (312)
T 4ery_A          210 ATLDNTLKLWDYSKGKCLKTYTGHKNE-----------------------------------------------------  236 (312)
T ss_dssp             EETTTEEEEEETTTTEEEEEECSSCCS-----------------------------------------------------
T ss_pred             EcCCCeEEEEECCCCcEEEEEEecCCc-----------------------------------------------------
Confidence            999999999999988776655433210                                                     


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCE
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRL  416 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~  416 (473)
                                             ...+......+++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++
T Consensus       237 -----------------------~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  293 (312)
T 4ery_A          237 -----------------------KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI  293 (312)
T ss_dssp             -----------------------SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSE
T ss_pred             -----------------------eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCc
Confidence                                   001112233467899999999999999999999999999999999999999999999


Q ss_pred             EEEEe--CCCcEEEEECC
Q 011978          417 LLSGS--KDSTLKVWDIR  432 (473)
Q Consensus       417 l~s~s--~Dg~i~iwd~~  432 (473)
                      |++++  .|++|++|+..
T Consensus       294 l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          294 IASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEEECTTTCCEEEEECC
T ss_pred             eEEEEccCCccEEEecCC
Confidence            99997  69999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.3e-37  Score=286.27  Aligned_cols=291  Identities=20%  Similarity=0.341  Sum_probs=210.7

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEECC--CCCeEEEEecCCeEE
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQ  175 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~  175 (473)
                      ..+.||.+.|.+++|+|++++||+|+.||.|++||+.++.    ....+.+|...|.+++|+|  |+++|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            4567999999999999999999999999999999998763    4556678999999999999  699999999999999


Q ss_pred             EeeCCCCcc--------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-----------
Q 011978          176 CWDPQTGKP--------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-----------  236 (473)
Q Consensus       176 iwd~~~~~~--------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-----------  236 (473)
                      +||+.+++.        ....+.+|...|.++.|.|..   .+..+++++.|+.|++||+++++.+..+           
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH---LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCC---CCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            999987642        223467899999999998841   1468999999999999999876543221           


Q ss_pred             --cCccccEEEEEecCC---C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978          237 --SGHTLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (473)
Q Consensus       237 --~~h~~~v~~~~~~~~---~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (473)
                        .+|...+.+++|+++   + .+++++.|+.+.+|+...++..                                    
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------------------------------  205 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH------------------------------------  205 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE------------------------------------
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee------------------------------------
Confidence              257778888888875   3 5777888888866665443221                                    


Q ss_pred             HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC----cEEEEEECCCcEEE
Q 011978          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG----QWVASASFDKSIKL  386 (473)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g----~~lasgs~d~~v~l  386 (473)
                                                               ....+.+|...|.+++|+|++    ++|++|+.||.|++
T Consensus       206 -----------------------------------------~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          206 -----------------------------------------VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             -----------------------------------------EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             -----------------------------------------eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence                                                     012234577789999999998    89999999999999


Q ss_pred             EeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe----CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978          387 WNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS----KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG  462 (473)
Q Consensus       387 wd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s----~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~  462 (473)
                      ||++++........+...+....+++....++.+.    ....+.+|+....+.+..+.+|...|++++|+|++++|+++
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence            99987765544444444444455555555444443    34456667666677788889999999999999999999999


Q ss_pred             eCCCcEEecc
Q 011978          463 GKDRVLKLWM  472 (473)
Q Consensus       463 ~~D~~i~~w~  472 (473)
                      +.|+.|++|+
T Consensus       325 ~~dg~v~iw~  334 (351)
T 3f3f_A          325 GDDGKVRLWK  334 (351)
T ss_dssp             ETTSCEEEEE
T ss_pred             cCCCcEEEEe
Confidence            9999999996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-36  Score=286.48  Aligned_cols=255  Identities=21%  Similarity=0.415  Sum_probs=211.1

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCC--CCceeEEEcCCCCCEEEEEECCC--CCeEEEEecCCeEE
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQ  175 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~--~~~~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg~i~  175 (473)
                      +...+.+|.+.|.+++|+|++++||+|+.||.|+|||+.  +......+.+|...|.+++|+++  +++|++++.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            345678999999999999999999999999999999997  44566678899999999999987  99999999999999


Q ss_pred             EeeCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC--eEEEEecCccccEEEEEecC--
Q 011978          176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGG--  250 (473)
Q Consensus       176 iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~--  250 (473)
                      +||+.+++. ....+.+|...|.++.|+|..   .+..+++++.|+.|++||+..+  .....+.+|...|.+++|++  
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE---YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCC---CCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            999988762 233467799999999998841   1468999999999999999877  34456778999999999998  


Q ss_pred             -----------CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          251 -----------DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       251 -----------~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                                 ++ .+++++.|+.|++||++++.....                                          
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------------------------------------  197 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------------------------------------  197 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEE------------------------------------------
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee------------------------------------------
Confidence                       34 678888888888888765432110                                          


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC---CcEEEEEECCCcEEEEeCCCCc--
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD---GQWVASASFDKSIKLWNGTTGK--  393 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~---g~~lasgs~d~~v~lwd~~~~~--  393 (473)
                                                       ....+.+|...|.+++|+|+   +++|++++.||.|++||+.++.  
T Consensus       198 ---------------------------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~  244 (379)
T 3jrp_A          198 ---------------------------------LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  244 (379)
T ss_dssp             ---------------------------------EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             ---------------------------------eEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence                                             01234467788999999999   8999999999999999998864  


Q ss_pred             -eEEEe--eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          394 -FVAVF--RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       394 -~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                       ....+  ..|...|.+++|+|+|++|++++.||.|++||+.
T Consensus       245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence             22233  3488899999999999999999999999999987

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.7e-35  Score=288.47  Aligned_cols=282  Identities=26%  Similarity=0.408  Sum_probs=240.9

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEC--CCCCeEEEEecCCeEE
Q 011978           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS--ADGKHLVSGSKAGELQ  175 (473)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s--~dg~~l~s~~~dg~i~  175 (473)
                      .++...+.+|.+.|.+++|+|++ .|++|+.||+|++||+.++..+..+.+|...|.+++|+  +++++|++|+.||.|+
T Consensus       152 ~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~  230 (464)
T 3v7d_B          152 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH  230 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred             CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence            34566778999999999999988 99999999999999999999998999999999999998  5788999999999999


Q ss_pred             EeeCCCCccc----------------------cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE
Q 011978          176 CWDPQTGKPS----------------------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV  233 (473)
Q Consensus       176 iwd~~~~~~~----------------------~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~  233 (473)
                      +||+.++...                      ...+.+|...+.++..       ++..+++++.|+.|++||+.+++++
T Consensus       231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~~~~~d~~i~vwd~~~~~~~  303 (464)
T 3v7d_B          231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-------HGNIVVSGSYDNTLIVWDVAQMKCL  303 (464)
T ss_dssp             EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE-------ETTEEEEEETTSCEEEEETTTTEEE
T ss_pred             EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC-------CCCEEEEEeCCCeEEEEECCCCcEE
Confidence            9999876532                      1235677777777742       3468999999999999999999999


Q ss_pred             EEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978          234 ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (473)
Q Consensus       234 ~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (473)
                      ..+.+|...|.+++|++++ .+++|+.|+.|++||+++++.+..+.+|...|.++.+++                     
T Consensus       304 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---------------------  362 (464)
T 3v7d_B          304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---------------------  362 (464)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS---------------------
T ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---------------------
Confidence            9999999999999999987 689999999999999999999999999999999888753                     


Q ss_pred             HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC
Q 011978          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (473)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~  392 (473)
                                       ..+++++.|+.+++||+.....  .....+...+..++|+|++++|++|+ |+.|++||+.++
T Consensus       363 -----------------~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          363 -----------------KFLVSAAADGSIRGWDANDYSR--KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             -----------------SEEEEEETTSEEEEEETTTCCE--EEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             -----------------CEEEEEeCCCcEEEEECCCCce--eeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence                             3689999999999999875432  22234566788899999999999999 899999999999


Q ss_pred             ceEEE-eeCCccCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011978          393 KFVAV-FRGHVGPVYQISWSADSRLLLSGSKDSTLKVW  429 (473)
Q Consensus       393 ~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iw  429 (473)
                      +++.. +..|.+.|.+++|+ ++.++++++.||.+.+|
T Consensus       423 ~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          423 KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            99875 67789999999997 44556666677765554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.1e-35  Score=283.85  Aligned_cols=276  Identities=23%  Similarity=0.398  Sum_probs=219.4

Q ss_pred             eeEEEeecc--cccc--cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE
Q 011978           90 AVFRIRPVN--RCSA--TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL  165 (473)
Q Consensus        90 ~~~~~~~~~--~~~~--~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  165 (473)
                      ..++++...  .+..  .+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+++.+..+.+|...+.+++|+  +..|
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l  202 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYIL  202 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEE
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEE
Confidence            345555543  2333  345788999999999999999999999999999999999999999999999998885  6799


Q ss_pred             EEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe----EEEEecCccc
Q 011978          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTL  241 (473)
Q Consensus       166 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~----~~~~~~~h~~  241 (473)
                      ++|+.|+.+++||..........+.+|...+..+.|.|     .+..+++++.|+.+++||...++    .+.....|..
T Consensus       203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-----~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~  277 (420)
T 4gga_A          203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG  277 (420)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS
T ss_pred             EEEeCCCceeEeeecccceeeEEecccccceeeeeecC-----CCCeeeeeeccccceEEeeccccccceeeeeecccCC
Confidence            99999999999999876665556789999999998877     45789999999999999998764    3456678999


Q ss_pred             cEEEEEecCCC--eEEE--eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHH
Q 011978          242 AVTCVKWGGDG--VIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (473)
Q Consensus       242 ~v~~~~~~~~~--~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (473)
                      .|.+++|++.+  .+++  |+.|++|++||+.+++....+..                                      
T Consensus       278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~--------------------------------------  319 (420)
T 4gga_A          278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA--------------------------------------  319 (420)
T ss_dssp             CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC--------------------------------------
T ss_pred             ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc--------------------------------------
Confidence            99999999864  4444  56899999999988776543321                                      


Q ss_pred             HhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE--CCCcEEEEeCCCCceE
Q 011978          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFV  395 (473)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs--~d~~v~lwd~~~~~~~  395 (473)
                                                                ...+.++.|+|+++.+++++  .|+.|++||+.+++++
T Consensus       320 ------------------------------------------~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v  357 (420)
T 4gga_A          320 ------------------------------------------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV  357 (420)
T ss_dssp             ------------------------------------------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred             ------------------------------------------ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence                                                      12466788999999888776  7899999999999999


Q ss_pred             EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEE
Q 011978          396 AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW  452 (473)
Q Consensus       396 ~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~  452 (473)
                      ..+.+|.+.|++++|+|||++|||||.|++|+|||+...........+...+....+
T Consensus       358 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~  414 (420)
T 4gga_A          358 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL  414 (420)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence            999999999999999999999999999999999999876554444444443333333

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.9e-35  Score=302.38  Aligned_cols=249  Identities=29%  Similarity=0.543  Sum_probs=212.3

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ...+.+|...|.+++|+|++++|++|+.|++|+|||+.++.....+.+|...|.+++|+|++++|++|+.|++|++||..
T Consensus       423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            45678999999999999999999999999999999999999888899999999999999999999999999999999986


Q ss_pred             CCcccc--ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEe
Q 011978          181 TGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (473)
Q Consensus       181 ~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~  257 (473)
                      ......  ....+|...|.++.|+|..   ....+++++.|++|++||++.+++...+.+|...|++++|++++ .+++|
T Consensus       503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg  579 (694)
T 3dm0_A          503 GECKYTISEGGEGHRDWVSCVRFSPNT---LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG  579 (694)
T ss_dssp             SCEEEEECSSTTSCSSCEEEEEECSCS---SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCcceeeccCCCCCCCcEEEEEEeCCC---CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            543221  2235799999999998843   12479999999999999999999999999999999999999987 58899


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      +.|++|++||+++++.+..+.                                                           
T Consensus       580 ~~Dg~i~iwd~~~~~~~~~~~-----------------------------------------------------------  600 (694)
T 3dm0_A          580 GKDGVVLLWDLAEGKKLYSLE-----------------------------------------------------------  600 (694)
T ss_dssp             ETTSBCEEEETTTTEEEECCB-----------------------------------------------------------
T ss_pred             eCCCeEEEEECCCCceEEEec-----------------------------------------------------------
Confidence            999999999998876543221                                                           


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc---------------
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV---------------  402 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~---------------  402 (473)
                                           +...+.+++|+|++.+|++++ |+.|++||+++++.+..+..+.               
T Consensus       601 ---------------------~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (694)
T 3dm0_A          601 ---------------------ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT  658 (694)
T ss_dssp             ---------------------CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred             ---------------------CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence                                 113478899999999888876 4569999999998877665321               


Q ss_pred             ----cCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          403 ----GPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       403 ----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                          ..+++++|||||++|++|+.||+|++||+..
T Consensus       659 ~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             --CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence                2378999999999999999999999999853

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.5e-35  Score=276.44  Aligned_cols=287  Identities=16%  Similarity=0.170  Sum_probs=207.3

Q ss_pred             EEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceE
Q 011978          134 LWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF  213 (473)
Q Consensus       134 iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~  213 (473)
                      ||++.+..++.....|...|.+++|+|||++|++|+.++ +++|+..+++....   .+...+..+.+.+.    ....+
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~   74 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS---QEMRHLSKVRMLHR----TNYVA   74 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE---EECSCCCEEEECTT----SSEEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee---eecCCeEEEEEcCC----CCEEE
Confidence            566777777767788999999999999999999988765 78999887654321   11112444444431    12234


Q ss_pred             EEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEeccc
Q 011978          214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTE  292 (473)
Q Consensus       214 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~  292 (473)
                      ++++.|++|++||..+++++..+. +...|.++.++++..++  ..|+.|++||+.++ +.+..+..   .....++++ 
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-  147 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-  147 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred             EEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence            678889999999999999988876 56689999999875443  35889999999988 66665554   222222221 


Q ss_pred             ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE--ecCCceEEEEeCCCCC--------------CC-eee
Q 011978          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS--GSDDFTMFLWEPAVSK--------------QP-KTR  355 (473)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~--------------~~-~~~  355 (473)
                                                           ..++.  |+.|+.+++||.....              .+ ...
T Consensus       148 -------------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~  190 (355)
T 3vu4_A          148 -------------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL  190 (355)
T ss_dssp             -------------------------------------TEEEEEESSCTTCEEEEECCC------------------CCEE
T ss_pred             -------------------------------------cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEE
Confidence                                                 12333  7899999999987543              12 566


Q ss_pred             ecCcccceeEEEECCCCcEEEEEECCCc-EEEEeCCCCceEEEee-C-CccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          356 MTGHQQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFR-G-HVGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       356 ~~~~~~~v~~v~~sp~g~~lasgs~d~~-v~lwd~~~~~~~~~~~-~-h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      +.+|...|++++|+|+|++||+|+.|++ |++||+++++++..+. + |.+.|.+++|+|+|++|++++.|++|++||+.
T Consensus       191 ~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            7899999999999999999999999998 9999999999999998 6 99999999999999999999999999999997


Q ss_pred             CCce--eeccc---------------------ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          433 TQKL--KQDLP---------------------GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       433 ~~~~--~~~~~---------------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ....  ...+.                     .+......++|++|++.|++++.||.+++|.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          271 NDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             CCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             CCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            6431  11111                     1112336689999999999999999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.6e-34  Score=269.47  Aligned_cols=252  Identities=29%  Similarity=0.513  Sum_probs=216.9

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      +...+.+|...|.+++|+|++++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||.
T Consensus        78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~  157 (340)
T 4aow_A           78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT  157 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence            34567899999999999999999999999999999999998888778888889999999999999999999999999999


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~  258 (473)
                      ...........+|...+..+.|.+..   ....+++++.|+.|++||+.+++.+..+.+|...|++++|++++ .|++|+
T Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          158 LGVCKYTVQDESHSEWVSCVRFSPNS---SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             TSCEEEEECSSSCSSCEEEEEECSCS---SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEeccccCcccceEEccCC---CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence            87766666678899999999987643   33578899999999999999999999999999999999999987 688999


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|++|++||+++++.+..+..                                                           
T Consensus       235 ~Dg~i~iwd~~~~~~~~~~~~-----------------------------------------------------------  255 (340)
T 4aow_A          235 KDGQAMLWDLNEGKHLYTLDG-----------------------------------------------------------  255 (340)
T ss_dssp             TTCEEEEEETTTTEEEEEEEC-----------------------------------------------------------
T ss_pred             CCCeEEEEEeccCceeeeecC-----------------------------------------------------------
Confidence            999999999987665443221                                                           


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe---------eCCccCEEEEE
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF---------RGHVGPVYQIS  409 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~---------~~h~~~v~~v~  409 (473)
                                           ...+.+++|+|++.++ +++.|+.|++||++++..+..+         .+|...|++++
T Consensus       256 ---------------------~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  313 (340)
T 4aow_A          256 ---------------------GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA  313 (340)
T ss_dssp             ---------------------SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE
T ss_pred             ---------------------CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE
Confidence                                 1347788999987755 4556899999999988766554         36888999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCc
Q 011978          410 WSADSRLLLSGSKDSTLKVWDIRTQK  435 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~  435 (473)
                      |+|||++|++|+.||.|+|||+.+|+
T Consensus       314 ~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          314 WSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            99999999999999999999998875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-35  Score=277.39  Aligned_cols=250  Identities=20%  Similarity=0.358  Sum_probs=207.9

Q ss_pred             eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (473)
Q Consensus       143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~  221 (473)
                      +..+.+|...|.+++|+|++++|++|+.||.|++||+..+.. ....+.+|...|.++.|.+..   ++..+++++.||.
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~l~s~~~dg~   80 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK---FGTILASCSYDGK   80 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTSC
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC---CCCEEEEeccCCE
Confidence            345678999999999999999999999999999999974322 223567899999999997631   2568999999999


Q ss_pred             EEEEECCCCe--EEEEecCccccEEEEEecCC--C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceee
Q 011978          222 ARIWDVSLRK--CVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (473)
Q Consensus       222 i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  296 (473)
                      |++||+.+++  .+..+.+|...|.+++|+++  + .+++++.|+.|++||+.++.....                    
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--------------------  140 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--------------------  140 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE--------------------
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee--------------------
Confidence            9999999987  77788899999999999987  5 688999999999999876532111                    


Q ss_pred             eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC------
Q 011978          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------  370 (473)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp------  370 (473)
                                                                               ..+.+|...|.+++|+|      
T Consensus       141 ---------------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A          141 ---------------------------------------------------------IIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             ---------------------------------------------------------EEEECCTTCEEEEEECCCC----
T ss_pred             ---------------------------------------------------------EEecCCCCceEEEEEcCcccccc
Confidence                                                                     11223445566777777      


Q ss_pred             -------CCcEEEEEECCCcEEEEeCCCCc----eEEEeeCCccCEEEEEEecC---CCEEEEEeCCCcEEEEECCCCc-
Q 011978          371 -------DGQWVASASFDKSIKLWNGTTGK----FVAVFRGHVGPVYQISWSAD---SRLLLSGSKDSTLKVWDIRTQK-  435 (473)
Q Consensus       371 -------~g~~lasgs~d~~v~lwd~~~~~----~~~~~~~h~~~v~~v~~sp~---g~~l~s~s~Dg~i~iwd~~~~~-  435 (473)
                             ++.+|++|+.|+.|++||+++++    ....+.+|.+.|.+++|+|+   +++|++++.||.|++||++.+. 
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~  243 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  243 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence                   79999999999999999998764    45678899999999999999   8999999999999999998753 


Q ss_pred             ----eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          436 ----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       436 ----~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                          .......|...|++++|+|++++|++++.|+.|++|+
T Consensus       244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence                2333445888999999999999999999999999996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.6e-35  Score=282.97  Aligned_cols=278  Identities=21%  Similarity=0.358  Sum_probs=225.6

Q ss_pred             EEEEEECCCCCeEE-EEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCCCcc
Q 011978          111 VLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP  184 (473)
Q Consensus       111 V~~~~~sp~~~~la-t~s~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~~~~  184 (473)
                      ...++++|+...++ +++.||.|+||++....    ....+.+|...|.+++|+| ++++|++|+.||.|++||+.++..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            34588888876554 57889999999996542    2344678999999999999 999999999999999999988742


Q ss_pred             ------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--cCccccEEEEEecCCC-eEE
Q 011978          185 ------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIY  255 (473)
Q Consensus       185 ------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~-~l~  255 (473)
                            ....+.+|...|.++.|+|..    ...+++++.|+.|++||+.+++.+..+  .+|...|.+++|++++ .|+
T Consensus       117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  192 (402)
T 2aq5_A          117 VLPLREPVITLEGHTKRVGIVAWHPTA----QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC  192 (402)
T ss_dssp             SSCBCSCSEEEECCSSCEEEEEECSSB----TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred             ccccCCceEEecCCCCeEEEEEECcCC----CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence                  223467899999999998842    258999999999999999999999999  8999999999999987 689


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +++.|+.|++||+++++.+..+.                                                         
T Consensus       193 ~~~~d~~i~iwd~~~~~~~~~~~---------------------------------------------------------  215 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKGTVVAEKD---------------------------------------------------------  215 (402)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE---------------------------------------------------------
T ss_pred             EEecCCcEEEEeCCCCceeeeec---------------------------------------------------------
Confidence            99999999999998876554331                                                         


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCccc-ceeEEEECCCCcEEEEE---ECCCcEEEEeCCCCce-EEEee-CCccCEEEEE
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQ-LVNHVYFSPDGQWVASA---SFDKSIKLWNGTTGKF-VAVFR-GHVGPVYQIS  409 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~lasg---s~d~~v~lwd~~~~~~-~~~~~-~h~~~v~~v~  409 (473)
                                           .+|.. .+.+++|+|++++|++|   +.|+.|++||+++++. +.... .|...+.+++
T Consensus       216 ---------------------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  274 (402)
T 2aq5_A          216 ---------------------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF  274 (402)
T ss_dssp             ---------------------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred             ---------------------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence                                 11222 26778999999999999   7899999999998754 33333 4777899999


Q ss_pred             EecCCCEEEE-EeCCCcEEEEECCCCce-eecccc--cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          410 WSADSRLLLS-GSKDSTLKVWDIRTQKL-KQDLPG--HADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       410 ~sp~g~~l~s-~s~Dg~i~iwd~~~~~~-~~~~~~--h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+|++++|++ ++.||.|++||+.+++. ...+..  |...|.+++|+|++.++++  .|+.+++|.
T Consensus       275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~  339 (402)
T 2aq5_A          275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK  339 (402)
T ss_dssp             EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred             EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence            9999999875 55799999999998773 344433  4588999999999998765  566899985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-34  Score=276.82  Aligned_cols=247  Identities=25%  Similarity=0.453  Sum_probs=212.1

Q ss_pred             CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  185 (473)
                      +|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|  +++.|++|+.||.|++||+......
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence            48999999999999999999999999999999999988899999999999999  4679999999999999999865554


Q ss_pred             cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEEEee--cCC
Q 011978          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGS--QDC  261 (473)
Q Consensus       186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~--~d~  261 (473)
                      ...+.+|...|.++.|+|     ++..+++++.|+.|++||+++++.+..+.+|...|.+++|++++  .+++++  .|+
T Consensus       210 ~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~  284 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRS-----DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK  284 (401)
T ss_dssp             EEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred             eeEEcCCCCCeeEEEEcC-----CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence            556788999999999987     45689999999999999999999999999999999999999865  455654  799


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      .|++||+.+++.+..+.                                                               
T Consensus       285 ~i~i~d~~~~~~~~~~~---------------------------------------------------------------  301 (401)
T 4aez_A          285 QIHFWNAATGARVNTVD---------------------------------------------------------------  301 (401)
T ss_dssp             EEEEEETTTCCEEEEEE---------------------------------------------------------------
T ss_pred             EEEEEECCCCCEEEEEe---------------------------------------------------------------
Confidence            99999998776544321                                                               


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE--CCCcEEEEeCCCCceEE--EeeCCccCEEEEEEecCCCEE
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVA--VFRGHVGPVYQISWSADSRLL  417 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs--~d~~v~lwd~~~~~~~~--~~~~h~~~v~~v~~sp~g~~l  417 (473)
                                       +...+.+++|+|++++|++++  .||.|++||+.+++...  .+.+|.+.|.+++|+|+|++|
T Consensus       302 -----------------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l  364 (401)
T 4aez_A          302 -----------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRIL  364 (401)
T ss_dssp             -----------------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEE
T ss_pred             -----------------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEE
Confidence                             123578899999999999954  89999999999876554  467899999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCceeec
Q 011978          418 LSGSKDSTLKVWDIRTQKLKQD  439 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~~~~~~~~  439 (473)
                      ++++.||.|++||+.+++....
T Consensus       365 ~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          365 STAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             EEECTTSEEEEEECCC------
T ss_pred             EEEeCCCcEEEEECCCCccccc
Confidence            9999999999999998776544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.8e-36  Score=284.13  Aligned_cols=242  Identities=16%  Similarity=0.196  Sum_probs=199.7

Q ss_pred             CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc-cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEE
Q 011978          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD  226 (473)
Q Consensus       148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd  226 (473)
                      .+..+|.+++|+|+|++|++|+.|+.|++||+.++. .....+.+|...|.++.|+|     ++.++++++.|++|++||
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-----KSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-----TTCCEEEEETTSSEEEC-
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-----CCCEEEEEeCCCeEEEEE
Confidence            356789999999999999999999999999998874 33456788999999999987     456899999999999999


Q ss_pred             CCCCe---EEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978          227 VSLRK---CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       227 ~~~~~---~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                      +.++.   ....+.+|...|.+++|++++ .+++++.|+.|++||+.+++...                           
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------------  136 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW---------------------------  136 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC---------------------------
T ss_pred             cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce---------------------------
Confidence            99877   677788999999999999987 58899999999999987643210                           


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC-cccceeEEEECCCCcEEEEEECC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFD  381 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d  381 (473)
                                                                       ....+.+ |...|.+++|+|++++|++|+.|
T Consensus       137 -------------------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d  167 (377)
T 3dwl_C          137 -------------------------------------------------VSKHLKRPLRSTILSLDWHPNNVLLAAGCAD  167 (377)
T ss_dssp             -------------------------------------------------CCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred             -------------------------------------------------eeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence                                                             0111223 67789999999999999999999


Q ss_pred             CcEEEEeCC------------------CCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce----eec
Q 011978          382 KSIKLWNGT------------------TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL----KQD  439 (473)
Q Consensus       382 ~~v~lwd~~------------------~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~----~~~  439 (473)
                      +.|++||+.                  .++++..+ +|.+.|.+++|+|++++|++++.||.|++||+.+++.    ...
T Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  246 (377)
T 3dwl_C          168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT  246 (377)
T ss_dssp             SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred             CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence            999999985                  34566667 8999999999999999999999999999999999877    788


Q ss_pred             ccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       440 ~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      +.+|...|.+++|+||+++|++++.|+.+.+|
T Consensus       247 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  278 (377)
T 3dwl_C          247 VKLSQLPLRSLLWANESAIVAAGYNYSPILLQ  278 (377)
T ss_dssp             EECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred             ecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence            89999999999999999999999888877554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.7e-35  Score=277.39  Aligned_cols=264  Identities=16%  Similarity=0.203  Sum_probs=219.2

Q ss_pred             ccccccCCcccEEEEEECCC----C---CeEEEEeCCCeEEEEeCCCCce-----eEEEcCC-----CCCEEEEEEC---
Q 011978          100 CSATIAGHTEAVLSVAFSPD----G---RQLASGSGDTTVRLWDLNTQTP-----MFKCTGH-----KNWVLCIAWS---  159 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~----~---~~lat~s~d~~i~iwd~~~~~~-----~~~~~~~-----~~~v~~l~~s---  159 (473)
                      +...+.+|...|.+++|+|+    +   ++|++++.|+.|++||+.++..     ...+..|     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            45667899999999999999    9   9999999999999999988776     7778888     5899999999   


Q ss_pred             -CCCCe-EEEEecCCeEEEeeCCC------Cccccc----cC-------CCcCCcEEEEEeceeccCCCCceEEEeeCCC
Q 011978          160 -ADGKH-LVSGSKAGELQCWDPQT------GKPSGN----PL-------SGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (473)
Q Consensus       160 -~dg~~-l~s~~~dg~i~iwd~~~------~~~~~~----~~-------~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg  220 (473)
                       |++++ |++++.||.|++||+.+      ++....    .+       ..|...|.++.|+|     ++ .+++++.|+
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~-~l~~~~~dg  207 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-----RG-LIATGFNNG  207 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-----TS-EEEEECTTS
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-----Cc-eEEEEeCCC
Confidence             99999 99999999999999987      543320    22       45788899999887     45 899999999


Q ss_pred             cEEEEECCCCeEEEEecC---c---cccEEEEEecCCC-eEEEeecC---CeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978          221 DARIWDVSLRKCVICLSG---H---TLAVTCVKWGGDG-VIYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (473)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~---h---~~~v~~~~~~~~~-~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  290 (473)
                      .|++||+++++.+..+.+   |   ...|.+++|++++ .|++++.|   +.|++||+++++.+..+......       
T Consensus       208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~-------  280 (397)
T 1sq9_A          208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS-------  280 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----------
T ss_pred             cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc-------
Confidence            999999999999999988   9   9999999999887 58899999   99999999988766554321100       


Q ss_pred             ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC
Q 011978          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp  370 (473)
                                                                                 .........|...|.+++|+|
T Consensus       281 -----------------------------------------------------------~~~~~~~~~~~~~v~~~~~~~  301 (397)
T 1sq9_A          281 -----------------------------------------------------------SQASLGEFAHSSWVMSLSFND  301 (397)
T ss_dssp             ----------------------------------------------------------------CCBSBSSCEEEEEECS
T ss_pred             -----------------------------------------------------------ccccccccccCCcEEEEEECC
Confidence                                                                       000001123667899999999


Q ss_pred             CCcEEEEEECCCcEEEEeCCCCceEEEee------CC---------------ccCEEEEEEecCC----------CEEEE
Q 011978          371 DGQWVASASFDKSIKLWNGTTGKFVAVFR------GH---------------VGPVYQISWSADS----------RLLLS  419 (473)
Q Consensus       371 ~g~~lasgs~d~~v~lwd~~~~~~~~~~~------~h---------------~~~v~~v~~sp~g----------~~l~s  419 (473)
                      ++++|++++.|+.|++||+.+++.+..+.      +|               ..+|++++|+|++          ++|++
T Consensus       302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s  381 (397)
T 1sq9_A          302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC  381 (397)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence            99999999999999999999999999999      88               9999999999998          79999


Q ss_pred             EeCCCcEEEEECCCCc
Q 011978          420 GSKDSTLKVWDIRTQK  435 (473)
Q Consensus       420 ~s~Dg~i~iwd~~~~~  435 (473)
                      ++.||.|++||+.+++
T Consensus       382 ~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          382 VCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EETTTEEEEEEEEC--
T ss_pred             ecCCCcEEEEEcCCCC
Confidence            9999999999998753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=271.03  Aligned_cols=255  Identities=17%  Similarity=0.304  Sum_probs=208.4

Q ss_pred             cCCcccEEEEEECCC---CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCEEEEE------ECCCCCeEEEEecCCeE
Q 011978          105 AGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNTQT-PMFKCTGHKNWVLCIA------WSADGKHLVSGSKAGEL  174 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~---~~~lat~s~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~------~s~dg~~l~s~~~dg~i  174 (473)
                      .+|...|.+++|+|+   +.+|++|+.|+.|++||+.++. +...+.+|...|.+++      |+|++++|++++.||.|
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            479999999999999   6999999999999999999887 7888899999999995      57899999999999999


Q ss_pred             EEeeCCCCccccccCCCcC----CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC
Q 011978          175 QCWDPQTGKPSGNPLSGHK----KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~----~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  250 (473)
                      ++||+.+++.....+..|.    ..+.++.|.+ .+++++..+++++.|+.|++||+++++.... ..|...|.+++|++
T Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN-AYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR  219 (357)
T ss_dssp             EEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC-CCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred             EEEeCCCCCCcceeccccCCCCCCceEEEEEEe-ccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence            9999988763333333333    3788888543 1334667999999999999999999887544 56888999999997


Q ss_pred             ---CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccC
Q 011978          251 ---DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (473)
Q Consensus       251 ---~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (473)
                         ++ .+++++.|+.|++||+++++....+.                                                
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------------------------------------  251 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFA------------------------------------------------  251 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEEEETTTEEE------------------------------------------------
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcCCCccccee------------------------------------------------
Confidence               55 68899999999999987643322111                                                


Q ss_pred             CCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEECCCcEEEEeCCCC-------------
Q 011978          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTG-------------  392 (473)
Q Consensus       327 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~~-------------  392 (473)
                                                .....+|...|.+++|+|+++ +|++|+.||.|++||++.+             
T Consensus       252 --------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~  305 (357)
T 3i2n_A          252 --------------------------SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM  305 (357)
T ss_dssp             --------------------------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC
T ss_pred             --------------------------eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc
Confidence                                      011235677899999999998 8999999999999998753             


Q ss_pred             ------ceEEEeeCCccCEEEEEEecCCCEEE-EEeCCCcEEEEECCCCc
Q 011978          393 ------KFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRTQK  435 (473)
Q Consensus       393 ------~~~~~~~~h~~~v~~v~~sp~g~~l~-s~s~Dg~i~iwd~~~~~  435 (473)
                            +.+..+.+|.++|++++|+|++++|+ +++.||.|++||+.+.+
T Consensus       306 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          306 GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence                  35777889999999999999999998 89999999999998654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.9e-35  Score=276.30  Aligned_cols=254  Identities=20%  Similarity=0.275  Sum_probs=210.9

Q ss_pred             CcccEEEEEECCC----CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCC
Q 011978          107 HTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       107 h~~~V~~~~~sp~----~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      |...|.+++|+|+    +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6788999999999    67999999999999999999998888999999999999999 899999999999999999998


Q ss_pred             Ccccccc--CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE------------------------
Q 011978          182 GKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC------------------------  235 (473)
Q Consensus       182 ~~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~------------------------  235 (473)
                      ++.....  +.+|...|.++.|+|     ++..+++++.|+.|++||+++++....                        
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDL-----LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP  222 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred             CeEEEEecccccccCceeEEEECC-----CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence            8765432  268999999999987     456899999999999999987654322                        


Q ss_pred             ----ecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeee-eeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978          236 ----LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (473)
Q Consensus       236 ----~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (473)
                          ..+|...|.+++|+ ...+++++.|+.|++||+.++..... +..+..                            
T Consensus       223 ~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~----------------------------  273 (366)
T 3k26_A          223 DFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES----------------------------  273 (366)
T ss_dssp             SEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC----------------------------
T ss_pred             ccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCc----------------------------
Confidence                23489999999999 55899999999999999876543110 000000                            


Q ss_pred             HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC--CcEEEEEECCCcEEEEe
Q 011978          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWN  388 (473)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~--g~~lasgs~d~~v~lwd  388 (473)
                                                            .......+.+|...|.+++|+|+  +++|++|+.||.|++||
T Consensus       274 --------------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd  315 (366)
T 3k26_A          274 --------------------------------------NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD  315 (366)
T ss_dssp             --------------------------------------CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred             --------------------------------------chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence                                                  00112234567778999999999  99999999999999999


Q ss_pred             CCCCc----eEEEeeCC--ccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          389 GTTGK----FVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       389 ~~~~~----~~~~~~~h--~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      +.+++    ....+.+|  .+.|++++|+|++++|++++.||.|++||+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99875    44577777  7899999999999999999999999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-34  Score=277.78  Aligned_cols=278  Identities=18%  Similarity=0.134  Sum_probs=223.1

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---eeEEEc--------------------------------------
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCT--------------------------------------  147 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~---~~~~~~--------------------------------------  147 (473)
                      .++.+++|+|+|++|+++ .++.|++||+.+++   .+..+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468899999999966665 57899999998887   443333                                      


Q ss_pred             ----------------CCCCCEEEEEECCCCCeE-EEEecCCeEEEeeCC--CCccccccC-CCcCCcEEEEEeceeccC
Q 011978          148 ----------------GHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQ--TGKPSGNPL-SGHKKWITGISWEPVHLN  207 (473)
Q Consensus       148 ----------------~~~~~v~~l~~s~dg~~l-~s~~~dg~i~iwd~~--~~~~~~~~~-~~~~~~v~~i~~~~~~~~  207 (473)
                                      .|...|.+++|+|+|++| ++++.||.|++||+.  +++...... ..|...|.++.|+|    
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp----  159 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE----  159 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT----
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC----
Confidence                            234479999999999996 889999999999998  665443221 25678899999987    


Q ss_pred             CCCceEEEeeCCCcEEEEECCCCeEEE----EecCccccEEEEEecCC---C-eEEEeecCCeEEEEECCCCceeeeeec
Q 011978          208 APCRRFVSASKDGDARIWDVSLRKCVI----CLSGHTLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       208 ~~~~~~~s~s~dg~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~---~-~l~s~~~d~~i~~wd~~~~~~~~~~~~  279 (473)
                       ++.++++++.+|.+++|++..+....    .+.+|...|.+++|+++   + .|++|+.|++|++||+.+++.+..   
T Consensus       160 -~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---  235 (450)
T 2vdu_B          160 -DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK---  235 (450)
T ss_dssp             -TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE---
T ss_pred             -CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee---
Confidence             45789999999999999998776443    66789999999999998   7 688999999999999876654322   


Q ss_pred             cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (473)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  359 (473)
                                                                                                 ...+|
T Consensus       236 ---------------------------------------------------------------------------~~~~h  240 (450)
T 2vdu_B          236 ---------------------------------------------------------------------------WLFGH  240 (450)
T ss_dssp             ---------------------------------------------------------------------------ECCCC
T ss_pred             ---------------------------------------------------------------------------eecCC
Confidence                                                                                       12356


Q ss_pred             ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC-------------------------ccCEEEEEEecCC
Q 011978          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH-------------------------VGPVYQISWSADS  414 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h-------------------------~~~v~~v~~sp~g  414 (473)
                      ...|.+++|+ ++++|++|+.|+.|++||+.+++++..+..+                         ...|.+++|+|++
T Consensus       241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  319 (450)
T 2vdu_B          241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL  319 (450)
T ss_dssp             SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred             CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence            6789999999 9999999999999999999999988887632                         3569999999999


Q ss_pred             CEEEEEe-CCCcEEEEEC--CCC---ceeecccccCCCEEEEEEeeCCCEEEEEeC------CCcEEecc
Q 011978          415 RLLLSGS-KDSTLKVWDI--RTQ---KLKQDLPGHADEVFAVDWSPDGEKVASGGK------DRVLKLWM  472 (473)
Q Consensus       415 ~~l~s~s-~Dg~i~iwd~--~~~---~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~~w~  472 (473)
                      ++|++++ .|+.|++||+  ..+   +....+.+| ..|.+++|+|++.+++.++.      +..|.+|.
T Consensus       320 ~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~  388 (450)
T 2vdu_B          320 PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE  388 (450)
T ss_dssp             SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred             CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence            9999999 8999999999  555   566777777 78999999996544444443      45578774

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=287.40  Aligned_cols=281  Identities=14%  Similarity=0.223  Sum_probs=202.9

Q ss_pred             EECCCCCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCC---Ccccc-cc
Q 011978          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT---GKPSG-NP  188 (473)
Q Consensus       115 ~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~---~~~~~-~~  188 (473)
                      .|+|+++.+++++      .|+. +++.+..+ .+|.+.|.+++|+| ++++|++|+.||+|++||+.+   +.... ..
T Consensus        34 ~f~~~~~~~~~~~------~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  106 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNL-RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL  106 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred             hcCCccccccccc------cccc-cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence            4678888887765      4874 45666677 89999999999999 999999999999999999876   43221 11


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC---CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEE
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV  265 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~  265 (473)
                      ..+|...|.++.|.|     ++..+++++.||.|++||+.   .++....+.+|  .+..+.+++++             
T Consensus       107 ~~~h~~~v~~~~~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------------  166 (437)
T 3gre_A          107 TYDCSSTVTQITMIP-----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------------  166 (437)
T ss_dssp             EEECSSCEEEEEECT-----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------------
T ss_pred             eccCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------------
Confidence            226899999999987     45689999999999999994   55555544433  34444443311             


Q ss_pred             EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (473)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  345 (473)
                                    +...+.++.+..                                  ......+++++.|+.+++||
T Consensus       167 --------------~~~~~~~~~~~~----------------------------------~~~~~~l~~~~~d~~i~iwd  198 (437)
T 3gre_A          167 --------------KNEYAVRMRAFV----------------------------------NEEKSLLVALTNLSRVIIFD  198 (437)
T ss_dssp             --------------SCCCEEEEEEEE----------------------------------CSSCEEEEEEETTSEEEEEE
T ss_pred             --------------cccCceEEEEEE----------------------------------cCCCCEEEEEeCCCeEEEEe
Confidence                          000001110000                                  00012344444444444444


Q ss_pred             CCCCCCCeeeecC--cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee-CCccCEEEEEEe----cCCCEEE
Q 011978          346 PAVSKQPKTRMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQISWS----ADSRLLL  418 (473)
Q Consensus       346 ~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~s----p~g~~l~  418 (473)
                      +.... ....+.+  |...|++++|+|++++|++|+.||.|++||+++++++..+. .|..+|.+++|+    |++.+|+
T Consensus       199 ~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~  277 (437)
T 3gre_A          199 IRTLE-RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV  277 (437)
T ss_dssp             TTTCC-EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred             CCCCe-eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence            43222 1222333  66789999999999999999999999999999999998886 788899999665    4688999


Q ss_pred             EEeCCCcEEEEECCCCceeecccc--------------------------cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          419 SGSKDSTLKVWDIRTQKLKQDLPG--------------------------HADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       419 s~s~Dg~i~iwd~~~~~~~~~~~~--------------------------h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +++.||.|++||+++++....+.+                          |...|++++|+ ++++|++++.|+.|++|+
T Consensus       278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFS  356 (437)
T ss_dssp             EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred             EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence            999999999999998876554443                          55668899999 789999999999999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1e-35  Score=283.07  Aligned_cols=258  Identities=12%  Similarity=0.068  Sum_probs=180.2

Q ss_pred             ECCCCCeEEEEecCCeEEEeeCCCCccc----cccCCCcCCcEEEEEeceeccC---CCCceEEEeeCCCcEEEEECCCC
Q 011978          158 WSADGKHLVSGSKAGELQCWDPQTGKPS----GNPLSGHKKWITGISWEPVHLN---APCRRFVSASKDGDARIWDVSLR  230 (473)
Q Consensus       158 ~s~dg~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~---~~~~~~~s~s~dg~i~iwd~~~~  230 (473)
                      +++++.+|++++.|++|++||.+++...    ...+.+|...|++++|+|....   .++..+++++.|++|+|||+.++
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            3445678999999999999999887542    2357899999999999985432   25678999999999999999998


Q ss_pred             eEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978          231 KCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (473)
Q Consensus       231 ~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (473)
                      .++..+.+|...|.+++|+|++  .|++++.|++|++||+++++.......+.......                     
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~---------------------  235 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW---------------------  235 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC---------------------
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce---------------------
Confidence            8888888899999999999876  58899999999999999887654433221100000                     


Q ss_pred             CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEEC-CCCcEEEEEECCCcEEEE
Q 011978          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-PDGQWVASASFDKSIKLW  387 (473)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s-p~g~~lasgs~d~~v~lw  387 (473)
                                             ..+.....          ........+|...+.+++|+ |+++.|++++.|+++++|
T Consensus       236 -----------------------~~s~~~~~----------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vw  282 (393)
T 4gq1_A          236 -----------------------LLTLNTLP----------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRW  282 (393)
T ss_dssp             -----------------------SEEEESGG----------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEE
T ss_pred             -----------------------EEeccccc----------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEE
Confidence                                   00000000          00011234677788899987 799999999999999999


Q ss_pred             eCCCCceEEEeeCCccCEEEEEEec--------------------CCCEEEEEeCCCcEEEEECCCCceeecccccCCCE
Q 011978          388 NGTTGKFVAVFRGHVGPVYQISWSA--------------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV  447 (473)
Q Consensus       388 d~~~~~~~~~~~~h~~~v~~v~~sp--------------------~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i  447 (473)
                      |+..++....+..|...+..+.++|                    ++.++++|+.||+|++||+.+++....+.+|...|
T Consensus       283 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V  362 (393)
T 4gq1_A          283 NLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPI  362 (393)
T ss_dssp             EC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCE
T ss_pred             ECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcE
Confidence            9998877777766666555554443                    34467888999999999999988877778899999


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEE
Q 011978          448 FAVDWSPDGEKVASGGKDRVLK  469 (473)
Q Consensus       448 ~~l~~s~d~~~l~s~~~D~~i~  469 (473)
                      .+++|||||++||+++.||.+.
T Consensus       363 ~svafspdG~~LA~as~~Gv~l  384 (393)
T 4gq1_A          363 VDFCWHQDGSHLAIATEGSVLL  384 (393)
T ss_dssp             EEEEECTTSSEEEEEESSEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEE
Confidence            9999999999999999988643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=265.20  Aligned_cols=254  Identities=16%  Similarity=0.274  Sum_probs=219.0

Q ss_pred             ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC-----C
Q 011978           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-----G  172 (473)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d-----g  172 (473)
                      ......+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +...|.+++|+|++++|++++.+     +
T Consensus        64 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g  142 (369)
T 3zwl_B           64 GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPG  142 (369)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred             chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCC
Confidence            34556778999999999999999999999999999999999998877776 88899999999999999999999     9


Q ss_pred             eEEEeeCCCCcccc----------ccCCCcCC--cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-CeEEEEecCc
Q 011978          173 ELQCWDPQTGKPSG----------NPLSGHKK--WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGH  239 (473)
Q Consensus       173 ~i~iwd~~~~~~~~----------~~~~~~~~--~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-~~~~~~~~~h  239 (473)
                      .|++||+..+....          ..+..|..  .+.++.|+|     ++..+++++.||.|++||+.+ .+.+..+.+|
T Consensus       143 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  217 (369)
T 3zwl_B          143 SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-----KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH  217 (369)
T ss_dssp             EEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-----GGCEEEEEETTSEEEEEETTTTTEEEEEEECC
T ss_pred             EEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-----CCCEEEEEcCCCEEEEEECCCCcEeEEEEecC
Confidence            99999987654211          12234444  788888887     456899999999999999998 7888889999


Q ss_pred             cccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          240 TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       240 ~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      ...|.+++|++++ .|++++.|+.|++||+.+++.+..+.                                        
T Consensus       218 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----------------------------------------  257 (369)
T 3zwl_B          218 EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----------------------------------------  257 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------------------------------------
T ss_pred             CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----------------------------------------
Confidence            9999999999987 58899999999999998876544322                                        


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC--------------cE
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--------------SI  384 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~--------------~v  384 (473)
                                                              +...+.+++|+|+++++++++.++              .+
T Consensus       258 ----------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i  297 (369)
T 3zwl_B          258 ----------------------------------------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEA  297 (369)
T ss_dssp             ----------------------------------------CSSCEEEEEECSSSSEEEEEECCC-------------CEE
T ss_pred             ----------------------------------------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCccee
Confidence                                                    123467888999999999999888              89


Q ss_pred             EEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978          385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK  437 (473)
Q Consensus       385 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~  437 (473)
                      ++||..+++.+..+.+|.+.|.+++|+|++++|++++.||.|++|++..+...
T Consensus       298 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          298 RFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred             EEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence            99999999999999999999999999999999999999999999999875543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=298.37  Aligned_cols=248  Identities=23%  Similarity=0.422  Sum_probs=202.4

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCC--CCceeEEEcCCCCCEEEEEECCC--CCeEEEEecCCeEEEe
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCW  177 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~--~~~~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg~i~iw  177 (473)
                      ..+.||.+.|++++|+|++++|++|+.||+|+|||+.  +......+.+|...|.+++|+|+  +++|++|+.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4578999999999999999999999999999999997  44566678899999999999988  8899999999999999


Q ss_pred             eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--C-eE
Q 011978          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--G-VI  254 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l  254 (473)
                      |+.+++.                                              ..+..+.+|...|.+++|+++  + .+
T Consensus        83 d~~~~~~----------------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l  116 (753)
T 3jro_A           83 KEENGRW----------------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLL  116 (753)
T ss_dssp             EEETTEE----------------------------------------------EEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             ECCCCcc----------------------------------------------cccccccCCCCCeEEEEECCCCCCCEE
Confidence            8765421                                              122234568888999999987  5 68


Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      ++|+.||.|++||++++.....                                                          
T Consensus       117 ~sgs~dg~I~vwdl~~~~~~~~----------------------------------------------------------  138 (753)
T 3jro_A          117 LVASSDGKVSVVEFKENGTTSP----------------------------------------------------------  138 (753)
T ss_dssp             EEEETTSEEEEEECCSSSCCCC----------------------------------------------------------
T ss_pred             EEEeCCCcEEEEEeecCCCcce----------------------------------------------------------
Confidence            8999999999999876532110                                                          


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-------------CCcEEEEEECCCcEEEEeCCCC----ceEEE
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-------------DGQWVASASFDKSIKLWNGTTG----KFVAV  397 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-------------~g~~lasgs~d~~v~lwd~~~~----~~~~~  397 (473)
                                         ....+|...|.+++|+|             ++.+|++|+.||.|++||++++    .....
T Consensus       139 -------------------~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  199 (753)
T 3jro_A          139 -------------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  199 (753)
T ss_dssp             -------------------EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             -------------------eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence                               11223445566666766             6899999999999999999877    55677


Q ss_pred             eeCCccCEEEEEEecC---CCEEEEEeCCCcEEEEECCCCc-----eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEE
Q 011978          398 FRGHVGPVYQISWSAD---SRLLLSGSKDSTLKVWDIRTQK-----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK  469 (473)
Q Consensus       398 ~~~h~~~v~~v~~sp~---g~~l~s~s~Dg~i~iwd~~~~~-----~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~  469 (473)
                      +.+|.++|++++|+|+   +++|++++.||.|++||+.+++     ......+|...|++++|+|+|++|++++.||.|+
T Consensus       200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~  279 (753)
T 3jro_A          200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  279 (753)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEE
T ss_pred             ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEE
Confidence            8899999999999999   8999999999999999998864     3344556888999999999999999999999999


Q ss_pred             ecc
Q 011978          470 LWM  472 (473)
Q Consensus       470 ~w~  472 (473)
                      +|.
T Consensus       280 vwd  282 (753)
T 3jro_A          280 LWK  282 (753)
T ss_dssp             CCB
T ss_pred             EEe
Confidence            996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-33  Score=266.51  Aligned_cols=245  Identities=20%  Similarity=0.283  Sum_probs=210.9

Q ss_pred             cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEE
Q 011978          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (473)
Q Consensus       147 ~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iw  225 (473)
                      ..|..+|.+++|+|++++|++++.|+.|++||+.+++. ....+.+|...|.++.|.|     ++..+++++.|+.|++|
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-----DSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-----TTTEEEEEETTSCEEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-----CCCEEEEEcCCCeEEEE
Confidence            45889999999999999999999999999999988751 2234678999999999987     45689999999999999


Q ss_pred             ECCCCeEEE--EecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978          226 DVSLRKCVI--CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       226 d~~~~~~~~--~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                      |+.+++...  .+.+|...|.+++|++++ .+++++.|+.|++||+..+......                         
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------------------------  134 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-------------------------  134 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------------------------
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------------------------
Confidence            998887544  346799999999999887 6889999999999998764321100                         


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~  382 (473)
                                                                        .....+|...|.+++|+|++++|++|+.|+
T Consensus       135 --------------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C          135 --------------------------------------------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             --------------------------------------------------EEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             --------------------------------------------------eeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence                                                              011124567799999999999999999999


Q ss_pred             cEEEEeC------------------CCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC
Q 011978          383 SIKLWNG------------------TTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA  444 (473)
Q Consensus       383 ~v~lwd~------------------~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~  444 (473)
                      .|++||+                  ..++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+++++.+..+.+|.
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  244 (372)
T 1k8k_C          165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  244 (372)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence            9999995                  4678888999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          445 DEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       445 ~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ..|.+++|+|++++|+++ .|+.|++|.
T Consensus       245 ~~v~~~~~~~~~~~l~~~-~d~~i~i~~  271 (372)
T 1k8k_C          245 LPLLAVTFITESSLVAAG-HDCFPVLFT  271 (372)
T ss_dssp             CCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred             CCeEEEEEecCCCEEEEE-eCCeEEEEE
Confidence            999999999999988877 999999996

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-35  Score=277.63  Aligned_cols=259  Identities=10%  Similarity=0.149  Sum_probs=210.4

Q ss_pred             CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (473)
Q Consensus       148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~  227 (473)
                      .-..+|.+++|+|||+++|+++.|++|+  |...++    .+.+|...|..++|+|..            .++.+.+|+.
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~----~l~gh~~~v~~V~FsPdg------------~~~~~~~~~~   74 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK----DINCNSKNLFHVKEFPLE------------FENKLDFELA   74 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS----CCSSBGGGTEEEEEECCC------------CCCTTTTSCC
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc----eecCCCccEEEEEECCCC------------CcceEEEEeC
Confidence            3467899999999999999999999999  765554    347899999999998832            3444445543


Q ss_pred             CCCeEEEEec-CccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCc-----eEEEEEecccceeeeccc
Q 011978          228 SLRKCVICLS-GHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGH-----WVNSLALSTEYALRTGAF  300 (473)
Q Consensus       228 ~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~  300 (473)
                         +....+. +|...|.+++|+|+|. |++++.||.+++||...  ++..+. |..     .+.+++++|+        
T Consensus        75 ---~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPD--------  140 (588)
T 2j04_A           75 ---QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPI--------  140 (588)
T ss_dssp             ---CSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSS--------
T ss_pred             ---CCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCC--------
Confidence               3222233 5678899999999995 99999999999999644  556666 554     4899999886        


Q ss_pred             cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC--C----eeee----cCcccceeEEEECC
Q 011978          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--P----KTRM----TGHQQLVNHVYFSP  370 (473)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~----~~~~----~~~~~~v~~v~~sp  370 (473)
                                                  ...|++|+.||++++||......  +    ...+    .+|..+|.+++|+|
T Consensus       141 ----------------------------G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP  192 (588)
T 2j04_A          141 ----------------------------ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE  192 (588)
T ss_dssp             ----------------------------SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred             ----------------------------CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence                                        34699999999999999876532  1    2333    67889999999999


Q ss_pred             CCcEEEEEECCCcEEEEeCCCCce---EEEe-eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC
Q 011978          371 DGQWVASASFDKSIKLWNGTTGKF---VAVF-RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE  446 (473)
Q Consensus       371 ~g~~lasgs~d~~v~lwd~~~~~~---~~~~-~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~  446 (473)
                      ||  +++++.|++|++||+.+++.   ..++ .+|...|.+++|+  |+.||+++ |++|++||+.+++......+|.+.
T Consensus       193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~  267 (588)
T 2j04_A          193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN  267 (588)
T ss_dssp             TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred             Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence            99  88899999999999988773   3566 4788999999999  68999997 699999999988774444489999


Q ss_pred             EEEEEE--eeCCCEEEEEeCCCcEEecc
Q 011978          447 VFAVDW--SPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       447 i~~l~~--s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |+.+.|  +||++.|++++.||+ ++|.
T Consensus       268 V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          268 FHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             CCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             EEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence            999999  999999999999999 9985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.4e-34  Score=269.53  Aligned_cols=246  Identities=12%  Similarity=0.159  Sum_probs=190.6

Q ss_pred             cccCCcccEEEEEECCCCCeEEEE-----------eCCCeEEEEeCCCCceeEE---------EcCCCCCEEEEEECCCC
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASG-----------SGDTTVRLWDLNTQTPMFK---------CTGHKNWVLCIAWSADG  162 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~-----------s~d~~i~iwd~~~~~~~~~---------~~~~~~~v~~l~~s~dg  162 (473)
                      .+.+|.+.|.+++++  ++.+++|           +.|+++|+|++.+......         ...++..+.+++|||||
T Consensus        68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            467899999888764  4556554           4578899999865432211         12345679999999999


Q ss_pred             CeEEE--EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE--EecC
Q 011978          163 KHLVS--GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSG  238 (473)
Q Consensus       163 ~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~--~~~~  238 (473)
                      ++|++  ++.|++|++||+.+++.....  .|...|.+++|+|     ++.++++++ ++.+++|+..++..+.  ...+
T Consensus       146 ~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fsp-----dg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~  217 (365)
T 4h5i_A          146 TVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFST-----DGKVVAYIT-GSSLEVISTVTGSCIARKTDFD  217 (365)
T ss_dssp             SCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECT-----TSSEEEEEC-SSCEEEEETTTCCEEEEECCCC
T ss_pred             CEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEcc-----CCceEEecc-ceeEEEEEeccCcceeeeecCC
Confidence            99875  447899999999998765432  4777899999987     556777777 4567777777776554  3457


Q ss_pred             ccccEEEEEecCCC-eEEEeecCC----eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHH
Q 011978          239 HTLAVTCVKWGGDG-VIYTGSQDC----TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (473)
Q Consensus       239 h~~~v~~~~~~~~~-~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (473)
                      |...|.+++|++++ .+++++.|+    .+++|++..+.....                                     
T Consensus       218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-------------------------------------  260 (365)
T 4h5i_A          218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-------------------------------------  260 (365)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-------------------------------------
T ss_pred             CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-------------------------------------
Confidence            88899999999988 477888776    567777654321100                                     


Q ss_pred             HHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc
Q 011978          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (473)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~  393 (473)
                                                            ....+.+|...|++++|+|||++||+|+.|++|+|||+++++
T Consensus       261 --------------------------------------~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~  302 (365)
T 4h5i_A          261 --------------------------------------RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS  302 (365)
T ss_dssp             --------------------------------------EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred             --------------------------------------eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence                                                  011234567789999999999999999999999999999999


Q ss_pred             eEEEe-eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          394 FVAVF-RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       394 ~~~~~-~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      ++..+ ++|.++|++|+|||||++|||||.|++|+|||+..
T Consensus       303 ~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          303 MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            98875 78999999999999999999999999999999964

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2e-33  Score=251.93  Aligned_cols=275  Identities=18%  Similarity=0.203  Sum_probs=182.4

Q ss_pred             cEEEEEECCCC-C--eEEEEeCCCeEEEEeCCCC---ceeEEEcCCCCCEEEEEECCCCCeEEEEecC----CeEEEe--
Q 011978          110 AVLSVAFSPDG-R--QLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCW--  177 (473)
Q Consensus       110 ~V~~~~~sp~~-~--~lat~s~d~~i~iwd~~~~---~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d----g~i~iw--  177 (473)
                      .+.++.|-..| +  -++++++ .+|++|+..+.   +++.....|+.+|..+.|.||-.-|++...-    +.|+..  
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            34555564443 2  3555554 69999999888   7788888888888777777754433332211    011111  


Q ss_pred             eCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEee---CCCcEEEEEC-CCCeEEEEecCccccEEEEEecC--
Q 011978          178 DPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDV-SLRKCVICLSGHTLAVTCVKWGG--  250 (473)
Q Consensus       178 d~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s---~dg~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~~--  250 (473)
                      ..++... ......+|...+.++        .. .+++..+   .|+.|++|++ ..++.+..+.+|...++.++|++  
T Consensus       120 spd~~~~~~~l~s~g~~~~v~~l--------~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~  190 (356)
T 2w18_A          120 SSDDESEKQVLLKSGNIKAVLGL--------TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ  190 (356)
T ss_dssp             ------CCEEEEEEEEEEEEEEE--------TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred             CCCccccccEEEeCCCeEEEEec--------CC-CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence            1110000 000001122112111        12 3444443   5999999999 55888888888888888888876  


Q ss_pred             -CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978          251 -DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (473)
Q Consensus       251 -~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
                       ++ .|++++.|++|++||+.+|++++++.+|...+                                            
T Consensus       191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v--------------------------------------------  226 (356)
T 2w18_A          191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ--------------------------------------------  226 (356)
T ss_dssp             TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----------------------------------------------
T ss_pred             CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce--------------------------------------------
Confidence             44 68899999999999999999888876543211                                            


Q ss_pred             CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcE------------EEEEECCCcEEEEeCCCCceEE
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW------------VASASFDKSIKLWNGTTGKFVA  396 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~------------lasgs~d~~v~lwd~~~~~~~~  396 (473)
                                                      ..+.+++|+|+|.+            +++|+.|++|++||..+++.+.
T Consensus       227 --------------------------------~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~  274 (356)
T 2w18_A          227 --------------------------------ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG  274 (356)
T ss_dssp             --------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred             --------------------------------eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence                                            12334455555554            4788999999999999999877


Q ss_pred             Ee-----eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEE-EEEEeeCCCEEEEEeCCCcEEe
Q 011978          397 VF-----RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF-AVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       397 ~~-----~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                      .+     .+|.+.+.+..++  +.++|+++.|++|+|||+.+++.+.++.+|.+.+. .++|||||++|+||+.|++|||
T Consensus       275 v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIkl  352 (356)
T 2w18_A          275 VMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFV  352 (356)
T ss_dssp             EEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred             EEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence            65     4777666555444  88999999999999999999999999999988765 5899999999999999999999


Q ss_pred             cc
Q 011978          471 WM  472 (473)
Q Consensus       471 w~  472 (473)
                      |+
T Consensus       353 Wd  354 (356)
T 2w18_A          353 YH  354 (356)
T ss_dssp             EE
T ss_pred             ec
Confidence            96

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-34  Score=268.09  Aligned_cols=274  Identities=11%  Similarity=0.038  Sum_probs=214.4

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK  193 (473)
Q Consensus       114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  193 (473)
                      ..+.+++.+|++|+.||+|++||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+...            
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------------  104 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN------------  104 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT------------
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC------------
Confidence            3455678899999999999999999888776655  456778888887   99999999999998642            


Q ss_pred             CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEecC--CC-eEEEeecCCeEEEEECC
Q 011978          194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGG--DG-VIYTGSQDCTIKVWETT  269 (473)
Q Consensus       194 ~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~--~~-~l~s~~~d~~i~~wd~~  269 (473)
                                                 .+.+||+.+++.+..+. +|...|.+++|++  ++ .+++++.|++|++||++
T Consensus       105 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~  157 (343)
T 3lrv_A          105 ---------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE  157 (343)
T ss_dssp             ---------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS
T ss_pred             ---------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC
Confidence                                       34567777777555444 7778999999999  76 68889999999999999


Q ss_pred             CCceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCC
Q 011978          270 QGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (473)
Q Consensus       270 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  348 (473)
                      +++...... .+...+.+++++|+                                    ...+++|+.|+.|++||+..
T Consensus       158 ~~~~~~~~~~~~~~~i~~~~~~pd------------------------------------g~~lasg~~dg~i~iwd~~~  201 (343)
T 3lrv_A          158 DDSQYIVHSAKSDVEYSSGVLHKD------------------------------------SLLLALYSPDGILDVYNLSS  201 (343)
T ss_dssp             SSCEEEEECCCSSCCCCEEEECTT------------------------------------SCEEEEECTTSCEEEEESSC
T ss_pred             CCcEEEEEecCCCCceEEEEECCC------------------------------------CCEEEEEcCCCEEEEEECCC
Confidence            998866553 34556888888765                                    23588999999999999987


Q ss_pred             CCCCeeeecC-cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC---CccCEE--EEEEecCCCEEEEEeC
Q 011978          349 SKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVY--QISWSADSRLLLSGSK  422 (473)
Q Consensus       349 ~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~---h~~~v~--~v~~sp~g~~l~s~s~  422 (473)
                      .......+.. |...|.+++|+|+|.+|++++. +.|++||+++++.+..+..   |...+.  +++|+|+|++|++++.
T Consensus       202 ~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          202 PDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             TTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred             CCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence            7665355666 9999999999999999999995 5999999998876555443   444444  6999999999999998


Q ss_pred             -CCcEEEEECCCCceeecccccCCCEEEEEEee---CCCEEEEEeCCCcEEecc
Q 011978          423 -DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP---DGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       423 -Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~---d~~~l~s~~~D~~i~~w~  472 (473)
                       |+.|++|++.........    ..+..+.|++   +.+.+++++.|+.+.++.
T Consensus       281 ~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          281 ESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             TTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence             999999999664432222    4567788888   888999999999888763

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-32  Score=251.58  Aligned_cols=248  Identities=20%  Similarity=0.369  Sum_probs=210.9

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC---ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~---~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i  176 (473)
                      ....+.+|...|.+++|+|++++|++++.|+.|++|++...   .+...+.+|...|.+++|  ++++|++++.||.|++
T Consensus        51 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~  128 (313)
T 3odt_A           51 LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKV  128 (313)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred             EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEE
Confidence            44566789999999999999999999999999999998654   456677899999999999  5789999999999999


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC-ccccEEEEEecCCCeEE
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-HTLAVTCVKWGGDGVIY  255 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~l~  255 (473)
                      ||  .++. ...+..|...+.++.|.|.    +...+++++.|+.+++||  .++....+.. |...+.+++|++++.++
T Consensus       129 ~d--~~~~-~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~  199 (313)
T 3odt_A          129 WK--EGSL-VYNLQAHNASVWDAKVVSF----SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI  199 (313)
T ss_dssp             EE--TTEE-EEEEECCSSCEEEEEEEET----TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEE
T ss_pred             Ec--CCcE-EEecccCCCceeEEEEccC----CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEE
Confidence            99  3332 2346778999999998873    346899999999999999  5566666766 89999999999998999


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +++.|+.|++||+++++.+..+.                                                         
T Consensus       200 ~~~~dg~i~i~d~~~~~~~~~~~---------------------------------------------------------  222 (313)
T 3odt_A          200 SCSNDGLIKLVDMHTGDVLRTYE---------------------------------------------------------  222 (313)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEE---------------------------------------------------------
T ss_pred             EccCCCeEEEEECCchhhhhhhh---------------------------------------------------------
Confidence            99999999999998766544332                                                         


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR  415 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~  415 (473)
                                            +|...|.+++|+|++ .|++++.||.|++||+.+++.+..+..|...|.+++|+|+++
T Consensus       223 ----------------------~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  279 (313)
T 3odt_A          223 ----------------------GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD  279 (313)
T ss_dssp             ----------------------CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             ----------------------cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC
Confidence                                  345568899999999 589999999999999999999999999999999999999998


Q ss_pred             EEEEEeCCCcEEEEECCCCceeec
Q 011978          416 LLLSGSKDSTLKVWDIRTQKLKQD  439 (473)
Q Consensus       416 ~l~s~s~Dg~i~iwd~~~~~~~~~  439 (473)
                       +++++.||.|++||+.+++....
T Consensus       280 -~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          280 -IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             -EEEEETTSCEEEEESCGGGCCC-
T ss_pred             -EEEEeCCCcEEEEeCCCCceeeh
Confidence             56789999999999998766543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=253.20  Aligned_cols=258  Identities=24%  Similarity=0.424  Sum_probs=210.8

Q ss_pred             eeEEEeecc--ccccc--ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE
Q 011978           90 AVFRIRPVN--RCSAT--IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL  165 (473)
Q Consensus        90 ~~~~~~~~~--~~~~~--~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  165 (473)
                      ..++++...  ++...  +.+|...|.+++|+|++++||+|+.|++|++||+++++.+..+.+|...+.++.+  ++..+
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l  122 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYIL  122 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEE
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEE
Confidence            345555432  33333  3578889999999999999999999999999999999999999999998887665  56799


Q ss_pred             EEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE----EEEecCccc
Q 011978          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----VICLSGHTL  241 (473)
Q Consensus       166 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~----~~~~~~h~~  241 (473)
                      ++++.++.+++|+...+......+.+|...+..+.+.+     .+..+++++.|+.|++||+++++.    ......|..
T Consensus       123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  197 (318)
T 4ggc_A          123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG  197 (318)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS
T ss_pred             EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-----CCCEEEEEecCcceeEEECCCCcccccceeeecccCC
Confidence            99999999999999887666566788999999988776     456899999999999999987642    344567778


Q ss_pred             cEEEEEecCCC--e--EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHH
Q 011978          242 AVTCVKWGGDG--V--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (473)
Q Consensus       242 ~v~~~~~~~~~--~--l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (473)
                      .|.++.+.+++  .  +++++.+++|++||..........                                        
T Consensus       198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~----------------------------------------  237 (318)
T 4ggc_A          198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----------------------------------------  237 (318)
T ss_dssp             CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE----------------------------------------
T ss_pred             ceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc----------------------------------------
Confidence            89999888754  2  345678888999987654432211                                        


Q ss_pred             HhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE--CCCcEEEEeCCCCceE
Q 011978          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFV  395 (473)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs--~d~~v~lwd~~~~~~~  395 (473)
                                                              .+...+..++|+|+++.+++++  .|+.|++||+++++++
T Consensus       238 ----------------------------------------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~  277 (318)
T 4ggc_A          238 ----------------------------------------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV  277 (318)
T ss_dssp             ----------------------------------------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred             ----------------------------------------cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE
Confidence                                                    1234577788999998887765  7999999999999999


Q ss_pred             EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978          396 AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       396 ~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                      ..+++|.+.|++++|+|||++|||||.||+|+|||+...
T Consensus       278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            999999999999999999999999999999999998753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.1e-33  Score=265.38  Aligned_cols=247  Identities=19%  Similarity=0.298  Sum_probs=201.2

Q ss_pred             CCCceeEEEcCCCCCEEEEEECCCC-CeEEEEecCCeEEEeeCCCCcccccc-CCCcCCcEEEEEeceeccCCCCceEEE
Q 011978          138 NTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVS  215 (473)
Q Consensus       138 ~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s  215 (473)
                      ........+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++..... ..+|...|.++.|+|.    +...+++
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s  136 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF----NTNQLFV  136 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT----EEEEEEE
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC----CCCEEEE
Confidence            3344455678899999999999999 89999999999999999987654332 3479999999999872    2358999


Q ss_pred             eeCCCcEEEEECCCCeEEEEecC---ccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecc
Q 011978          216 ASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST  291 (473)
Q Consensus       216 ~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  291 (473)
                      ++.|+.|++||+.. ..+..+..   |...|.+++|++++ .+++++.|+.|++||++ ++.+..               
T Consensus       137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~---------------  199 (383)
T 3ei3_B          137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFK---------------  199 (383)
T ss_dssp             EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEE---------------
T ss_pred             EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEE---------------
Confidence            99999999999986 44444443   44789999999887 58899999999999973 333222               


Q ss_pred             cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC
Q 011978          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD  371 (473)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~  371 (473)
                                                                                      +.+|...|.+++|+|+
T Consensus       200 ----------------------------------------------------------------~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          200 ----------------------------------------------------------------EKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             ----------------------------------------------------------------EECSSSCEEEEEECSS
T ss_pred             ----------------------------------------------------------------eccCCCcEEEEEECCC
Confidence                                                                            2245667899999999


Q ss_pred             Cc-EEEEEECCCcEEEEeCCC----CceEEEeeCCccCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCceeecccccC-
Q 011978          372 GQ-WVASASFDKSIKLWNGTT----GKFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-  444 (473)
Q Consensus       372 g~-~lasgs~d~~v~lwd~~~----~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~-  444 (473)
                      ++ +|++|+.|+.|++||+++    +.++..+ +|.+.|.+++|+| ++++|++++.|+.|++||+++++....+.+|. 
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence            99 999999999999999987    5666666 6999999999999 99999999999999999999877655555442 


Q ss_pred             ----------------CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          445 ----------------DEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       445 ----------------~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                                      ..+..++|+||+++  +++.|+.|++|+
T Consensus       295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd  336 (383)
T 3ei3_B          295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYD  336 (383)
T ss_dssp             CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEE
T ss_pred             cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEe
Confidence                            34556778888877  888999999997

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=273.90  Aligned_cols=248  Identities=16%  Similarity=0.355  Sum_probs=199.5

Q ss_pred             CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc----------ccccCCCcC------------CcEEEEEeceec
Q 011978          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----------SGNPLSGHK------------KWITGISWEPVH  205 (473)
Q Consensus       148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~------------~~v~~i~~~~~~  205 (473)
                      .+.+.|.+++|+|+|++|++|+.||.|++||+.+++.          ....+.+|.            ..|.++.|.|..
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            3568899999999999999999999999999987652          233466887            889999998842


Q ss_pred             cCCCCceEEEeeCCCcEEEEECCCCeEE----------------------------------------EEecCccccEEE
Q 011978          206 LNAPCRRFVSASKDGDARIWDVSLRKCV----------------------------------------ICLSGHTLAVTC  245 (473)
Q Consensus       206 ~~~~~~~~~s~s~dg~i~iwd~~~~~~~----------------------------------------~~~~~h~~~v~~  245 (473)
                         ....+++++.|++|++||+..+...                                        ....+|...|.+
T Consensus       106 ---~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          106 ---NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             ---SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             ---CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence               1158999999999999998765432                                        114689999999


Q ss_pred             EEecCCCe-EEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978          246 VKWGGDGV-IYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (473)
Q Consensus       246 ~~~~~~~~-l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (473)
                      ++|++++. +++| .|+.|++||+.++ +.+..+                                              
T Consensus       183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~----------------------------------------------  215 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIV----------------------------------------------  215 (447)
T ss_dssp             EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEE----------------------------------------------
T ss_pred             EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeee----------------------------------------------
Confidence            99999884 6666 8999999998742 221111                                              


Q ss_pred             ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCce----EEEe
Q 011978          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKF----VAVF  398 (473)
Q Consensus       324 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~----~~~~  398 (473)
                                           +..     ...+.+|...|.+++|+|++ ++|++|+.||.|++||+++++.    +..+
T Consensus       216 ---------------------~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  269 (447)
T 3dw8_B          216 ---------------------DIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF  269 (447)
T ss_dssp             ---------------------ECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE
T ss_pred             ---------------------ecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe
Confidence                                 000     01244677889999999998 9999999999999999999886    7888


Q ss_pred             eCCcc------------CEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceeecccccCCC---------------EEEE
Q 011978          399 RGHVG------------PVYQISWSADSRLLLSGSKDSTLKVWDIRT-QKLKQDLPGHADE---------------VFAV  450 (473)
Q Consensus       399 ~~h~~------------~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~h~~~---------------i~~l  450 (473)
                      .+|..            .|.+++|+|+|++|++++. +.|++||++. ++....+.+|...               ++.+
T Consensus       270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~  348 (447)
T 3dw8_B          270 EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFEC  348 (447)
T ss_dssp             CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCE
T ss_pred             ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEE
Confidence            88876            8999999999999999998 9999999987 7777788877531               3459


Q ss_pred             EEeeCCCEEEEEeCCCcEEecc
Q 011978          451 DWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       451 ~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +|+|++++|++++.|+.|++|+
T Consensus       349 ~~s~~~~~l~s~s~dg~v~iwd  370 (447)
T 3dw8_B          349 CWNGSDSVVMTGSYNNFFRMFD  370 (447)
T ss_dssp             EECTTSSEEEEECSTTEEEEEE
T ss_pred             EECCCCCEEEEeccCCEEEEEE
Confidence            9999999999999999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.1e-33  Score=270.62  Aligned_cols=250  Identities=22%  Similarity=0.443  Sum_probs=212.1

Q ss_pred             cccCCcccEEEEEECCC-CCeEEEEeCCCeEEEEeCCC----------CceeEEEcCCCCCEEEEEECCCCC-eEEEEec
Q 011978          103 TIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGK-HLVSGSK  170 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~-~~~lat~s~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~l~~s~dg~-~l~s~~~  170 (473)
                      ...+|.+.|++++|+|+ +.+||+++.||.|++||+.+          ..+...+.+|...|.+++|+|++. +|++|+.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            34679999999999998 67899999999999999976          566778889999999999999998 9999999


Q ss_pred             CCeEEEeeCCCCccc------cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC---eEEEEecCccc
Q 011978          171 AGELQCWDPQTGKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTL  241 (473)
Q Consensus       171 dg~i~iwd~~~~~~~------~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~---~~~~~~~~h~~  241 (473)
                      ||.|++|++.++...      ...+.+|...|.++.|+|.    ....|++++.|+.|++||++++   +.+..+.+|..
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~----~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL----HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS----CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC----CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            999999999874321      2335689999999999883    2458999999999999999976   56667779999


Q ss_pred             cEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978          242 AVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (473)
Q Consensus       242 ~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (473)
                      .|++++|++++  .+++|+.||.|++||+++...                                              
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------------------------------------------  312 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------------------------------------------  312 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------------------------------------------
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------------------------------------------
Confidence            99999999876  478999999999999875321                                              


Q ss_pred             hhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEECCCcEEEEeCCC-------
Q 011978          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTT-------  391 (473)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~-------  391 (473)
                                                      +...+.+|...|.+++|+|+++ +|++++.|+.|++||+..       
T Consensus       313 --------------------------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          313 --------------------------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             --------------------------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             --------------------------------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence                                            1122334667799999999985 799999999999999986       


Q ss_pred             -------CceEEEeeCCccCEEEEEEecCCC-EEEEEeCCCcEEEEECCCC
Q 011978          392 -------GKFVAVFRGHVGPVYQISWSADSR-LLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       392 -------~~~~~~~~~h~~~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~~  434 (473)
                             .+.+..+.+|...|.+++|+|++. +|++++.||.|+||++...
T Consensus       361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                   367788889999999999999999 8999999999999998764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.6e-33  Score=268.20  Aligned_cols=246  Identities=22%  Similarity=0.411  Sum_probs=210.4

Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC----------CeEEEEecCccccEEEEEecCCC--eEE
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----------RKCVICLSGHTLAVTCVKWGGDG--VIY  255 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~--~l~  255 (473)
                      ....|...|+++.|.|.    ....+++++.||.|++||+..          ...+..+.+|...|.+++|++++  .|+
T Consensus       123 ~~~~h~~~v~~l~~~p~----~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQ----NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             EEEEESSCCSEEEEETT----EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             EEEcCCCcEEEEEECCC----CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            34678889999999873    235899999999999999986          56777888999999999999875  689


Q ss_pred             EeecCCeEEEEECCCCce-------eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978          256 TGSQDCTIKVWETTQGKL-------IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
                      +|+.||.|++||+.++..       ...+..|...|.++++++.                                   .
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-----------------------------------~  243 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-----------------------------------H  243 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-----------------------------------C
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-----------------------------------C
Confidence            999999999999987422       3456678888999988763                                   1


Q ss_pred             CceEEEecCCceEEEEeCCCCC--CCeeeecCcccceeEEEECCCCc-EEEEEECCCcEEEEeCCC-CceEEEeeCCccC
Q 011978          329 PERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTT-GKFVAVFRGHVGP  404 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~-~~~~~~~~~h~~~  404 (473)
                      ...+++++.|+.|++||+....  .....+..|...|++++|+|+++ +|++|+.||.|++||+++ ++.+..+.+|.+.
T Consensus       244 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~  323 (430)
T 2xyi_A          244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE  323 (430)
T ss_dssp             TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred             CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC
Confidence            3468899999999999988653  44556678999999999999987 799999999999999998 5678889999999


Q ss_pred             EEEEEEecCCC-EEEEEeCCCcEEEEECCC--------------CceeecccccCCCEEEEEEeeCCC-EEEEEeCCCcE
Q 011978          405 VYQISWSADSR-LLLSGSKDSTLKVWDIRT--------------QKLKQDLPGHADEVFAVDWSPDGE-KVASGGKDRVL  468 (473)
Q Consensus       405 v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~--------------~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~~D~~i  468 (473)
                      |.+++|+|++. +|++++.||.|+|||+..              .+.+..+.+|...|++++|+|+++ +|++++.|+.|
T Consensus       324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i  403 (430)
T 2xyi_A          324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM  403 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCE
Confidence            99999999985 699999999999999986              255667788999999999999999 89999999999


Q ss_pred             Eecc
Q 011978          469 KLWM  472 (473)
Q Consensus       469 ~~w~  472 (473)
                      ++|.
T Consensus       404 ~iw~  407 (430)
T 2xyi_A          404 QVWQ  407 (430)
T ss_dssp             EEEE
T ss_pred             EEeE
Confidence            9996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=9.3e-32  Score=259.55  Aligned_cols=318  Identities=12%  Similarity=0.082  Sum_probs=246.0

Q ss_pred             cccEEEEE---ECCCCCeEEEE--------------eCCCeEEEEe--CCCC--ceeEEEcCCCCCEEEEEECCCCCeEE
Q 011978          108 TEAVLSVA---FSPDGRQLASG--------------SGDTTVRLWD--LNTQ--TPMFKCTGHKNWVLCIAWSADGKHLV  166 (473)
Q Consensus       108 ~~~V~~~~---~sp~~~~lat~--------------s~d~~i~iwd--~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~  166 (473)
                      ...+..++   |+|++..++..              +.++.++||.  ..++  ..+..+..+ ..+.+++|+|++..++
T Consensus        60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~  138 (433)
T 3bws_A           60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAI  138 (433)
T ss_dssp             TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEE
T ss_pred             CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEE
Confidence            34566667   77776665533              2333234554  4334  344444444 3466999999777788


Q ss_pred             EEecCCeEEEeeCCCCccccc----cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcccc
Q 011978          167 SGSKAGELQCWDPQTGKPSGN----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA  242 (473)
Q Consensus       167 s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~  242 (473)
                      +++.++.|++||+.+++....    .+.+|...+.++.|.|     ++..+++++.|+.|++||+.+++.+..+..|...
T Consensus       139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~  213 (433)
T 3bws_A          139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-----HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW  213 (433)
T ss_dssp             EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS
T ss_pred             EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-----CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC
Confidence            888899999999998875532    2357888999999866     4568899999999999999999999988899999


Q ss_pred             EEEEEecCCC-eE-EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhh
Q 011978          243 VTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (473)
Q Consensus       243 v~~~~~~~~~-~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (473)
                      +.+++|++++ .+ ++++.|+.|++||+.+++.+..+..+. .+..++++++.                           
T Consensus       214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g---------------------------  265 (433)
T 3bws_A          214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDG---------------------------  265 (433)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTS---------------------------
T ss_pred             eeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCC---------------------------
Confidence            9999999987 34 455689999999999998887776644 47777776653                           


Q ss_pred             hhcccCCCCceEEEec--------CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcE-EEEEECCCcEEEEeCCC
Q 011978          321 YNKIKGNAPERLVSGS--------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-VASASFDKSIKLWNGTT  391 (473)
Q Consensus       321 ~~~~~~~~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~-lasgs~d~~v~lwd~~~  391 (473)
                               ..+++++        .|+.+++||+...+  ......|...+.+++|+|++++ +++++.|+.|++||..+
T Consensus       266 ---------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          266 ---------KELYIAQFSASNQESGGGRLGIYSMDKEK--LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             ---------SEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred             ---------CEEEEEECCCCccccCCCeEEEEECCCCc--EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence                     2344444        58899999986543  2223355567889999999975 46668899999999999


Q ss_pred             CceEEEeeCCccCEEEEEEecCCCEEEEEeC---------------CCcEEEEECCCCceeecccccCCCEEEEEEeeCC
Q 011978          392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSK---------------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG  456 (473)
Q Consensus       392 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~---------------Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~  456 (473)
                      ++.+..+. +...+.+++|+|+|++|++++.               ||.|++||+.+++....+.. ...+.+++|+|||
T Consensus       335 ~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg  412 (433)
T 3bws_A          335 KKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDN  412 (433)
T ss_dssp             TEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS
T ss_pred             CcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCC
Confidence            98888776 6678999999999999888876               57999999999988877765 4579999999999


Q ss_pred             CEEEEEeC-CCcEEecc
Q 011978          457 EKVASGGK-DRVLKLWM  472 (473)
Q Consensus       457 ~~l~s~~~-D~~i~~w~  472 (473)
                      ++|++++. |+.|++|.
T Consensus       413 ~~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          413 RYLVISDFLDHQIRVYR  429 (433)
T ss_dssp             CEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCCeEEEEE
Confidence            99988875 99999996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.8e-33  Score=268.08  Aligned_cols=259  Identities=29%  Similarity=0.556  Sum_probs=207.9

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      .+...+.+|...|.+++|  ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|++  ..|++|+.||.|++||
T Consensus       164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  239 (435)
T 1p22_A          164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWD  239 (435)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEe
Confidence            455678899999999999  789999999999999999999999999999999999999974  5999999999999999


Q ss_pred             CCCCcccc--ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEE
Q 011978          179 PQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT  256 (473)
Q Consensus       179 ~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s  256 (473)
                      +.++....  ..+.+|...|.++.|.       +..+++++.||.|++||+++++++..+.+|...|.++.++ +..+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~  311 (435)
T 1p22_A          240 MASPTDITLRRVLVGHRAAVNVVDFD-------DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVS  311 (435)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEEE-------TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTEEEE
T ss_pred             CCCCCCceeeeEecCCCCcEEEEEeC-------CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-CCEEEE
Confidence            98876432  4567899999999883       3689999999999999999999999999999999999996 458999


Q ss_pred             eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      |+.||.|++||+++++.+..+.                                                          
T Consensus       312 g~~dg~i~iwd~~~~~~~~~~~----------------------------------------------------------  333 (435)
T 1p22_A          312 GSSDNTIRLWDIECGACLRVLE----------------------------------------------------------  333 (435)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC----------------------------------------------------------
T ss_pred             EeCCCeEEEEECCCCCEEEEEe----------------------------------------------------------
Confidence            9999999999998876654443                                                          


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc---------eEEEeeCCccCEEE
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK---------FVAVFRGHVGPVYQ  407 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~---------~~~~~~~h~~~v~~  407 (473)
                                           +|...|.+++|  ++.+|++|+.||.|++||+.+++         ++..+.+|.+.|.+
T Consensus       334 ---------------------~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~  390 (435)
T 1p22_A          334 ---------------------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR  390 (435)
T ss_dssp             ---------------------CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred             ---------------------CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEE
Confidence                                 34445677777  68899999999999999987665         78889999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEe
Q 011978          408 ISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS  453 (473)
Q Consensus       408 v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s  453 (473)
                      ++|  ++++|++++.||+|++||+........... ..+..++.|.
T Consensus       391 l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~  433 (435)
T 1p22_A          391 LQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRTYTYI  433 (435)
T ss_dssp             EEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             EEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCC-CCCccceeee
Confidence            999  788999999999999999987654433322 2334444444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-33  Score=271.60  Aligned_cols=268  Identities=19%  Similarity=0.259  Sum_probs=198.1

Q ss_pred             cccccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978          101 SATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw  177 (473)
                      ...+.||.+.|++|+|+| ++.+|++|+.||+|++||++++.......  .+...+.+++|+|++++|++|+.||.|++|
T Consensus       157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w  236 (435)
T 4e54_B          157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL  236 (435)
T ss_dssp             EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred             EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence            345679999999999998 68999999999999999998765433333  334568899999999999999999999999


Q ss_pred             eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE---EecCccccEEEEEecCCC-e
Q 011978          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI---CLSGHTLAVTCVKWGGDG-V  253 (473)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~-~  253 (473)
                      |++... . ..+.+|...|.++.|+|..    ...+++++.|+.|++||++..+...   ...+|...|++++|++++ .
T Consensus       237 d~~~~~-~-~~~~~h~~~v~~v~~~p~~----~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~  310 (435)
T 4e54_B          237 NMDGKE-L-WNLRMHKKKVTHVALNPCC----DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR  310 (435)
T ss_dssp             ESSSCB-C-CCSBCCSSCEEEEEECTTC----SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE
T ss_pred             ccCcce-e-EEEecccceEEeeeecCCC----ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe
Confidence            986543 2 3577899999999998742    2478899999999999998765432   335799999999999987 6


Q ss_pred             EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      |++++.|++|++||+.++.....+..|......                   ..                       ..+
T Consensus       311 l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~-------------------~~-----------------------~~~  348 (435)
T 4e54_B          311 LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ-------------------HL-----------------------TPI  348 (435)
T ss_dssp             EEEEESSSCEEEEESSSSSSEEEECCCCCCCCS-------------------SS-----------------------CCC
T ss_pred             eEEEcCCCEEEEEECCCCccceEEecccccccc-------------------cc-----------------------eeE
Confidence            899999999999999988776655443211000                   00                       000


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEee-CCccCEEEE-EE
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFR-GHVGPVYQI-SW  410 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~-~h~~~v~~v-~~  410 (473)
                             -..|.             ....+..+++++++..+++++ .++.|++||..+++.+..+. +|...|.++ +|
T Consensus       349 -------~~~~~-------------~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~f  408 (435)
T 4e54_B          349 -------KAAWH-------------PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEF  408 (435)
T ss_dssp             -------BCEEC-------------SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEE
T ss_pred             -------EEEEc-------------CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEE
Confidence                   00010             111233445556665554443 34689999999999887764 688888887 69


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978          411 SADSRLLLSGSKDSTLKVWDIRTQKLK  437 (473)
Q Consensus       411 sp~g~~l~s~s~Dg~i~iwd~~~~~~~  437 (473)
                      +|+|++||+|+ |++|+|||+++++..
T Consensus       409 spdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          409 NPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             CCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            99999999876 889999999987653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1e-32  Score=258.65  Aligned_cols=279  Identities=10%  Similarity=0.079  Sum_probs=208.2

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE-EEEecCCeEEEeeCCC
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQT  181 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~s~~~dg~i~iwd~~~  181 (473)
                      ++.+|.+.|++++|+|||++||+|+.|+ ++|||+.+.........  ..+..+++.++++.+ ++++.|++|++||..+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            4577999999999999999999988765 78999987765544332  247788898888877 5678889999999999


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCCeEEE--ee
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYT--GS  258 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~s--~~  258 (473)
                      ++.....  .+...|.++.+++.       .++. ..|+.|++||+.++ +.+..+..   ....+++++ ..++.  |+
T Consensus        91 ~~~~~~~--~~~~~v~~v~~~~~-------~~~~-~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~  156 (355)
T 3vu4_A           91 KQDVSRI--KVDAPVKDLFLSRE-------FIVV-SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEF  156 (355)
T ss_dssp             TEEEEEE--ECSSCEEEEEECSS-------EEEE-EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEEESS
T ss_pred             CcEEEEE--ECCCceEEEEEcCC-------EEEE-EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEeCCC
Confidence            8765432  35668999988752       3443 35889999999887 55444433   233344555 44444  78


Q ss_pred             cCCeEEEEECCCCc----------------eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978          259 QDCTIKVWETTQGK----------------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (473)
Q Consensus       259 ~d~~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (473)
                      .||.|++||+.+++                .+..+.+|...|.+++++++                              
T Consensus       157 ~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~------------------------------  206 (355)
T 3vu4_A          157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK------------------------------  206 (355)
T ss_dssp             CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT------------------------------
T ss_pred             cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC------------------------------
Confidence            99999999999865                26778999999999999876                              


Q ss_pred             cccCCCCceEEEecCCce-EEEEeCCCCCCCeeeecC-cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce--EEEe
Q 011978          323 KIKGNAPERLVSGSDDFT-MFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVF  398 (473)
Q Consensus       323 ~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~--~~~~  398 (473)
                            ...+++++.|++ +++||............+ |...|.+++|+|+|++|++++.|++|++||+..+..  ...+
T Consensus       207 ------g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~  280 (355)
T 3vu4_A          207 ------SDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHAL  280 (355)
T ss_dssp             ------SSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEET
T ss_pred             ------CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccc
Confidence                  246999999998 999998765443333325 999999999999999999999999999999876531  1111


Q ss_pred             e---------------------CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978          399 R---------------------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       399 ~---------------------~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                      .                     .+......++|+|||++|++++.||.+++|++..+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          281 KGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             TTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             cceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            1                     11223467899999999999999999999998653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.8e-32  Score=261.84  Aligned_cols=253  Identities=20%  Similarity=0.299  Sum_probs=209.1

Q ss_pred             ccccccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCEEEEEECCCC-CeEEEEec
Q 011978          100 CSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADG-KHLVSGSK  170 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~  170 (473)
                      ....+.+|.+.|.+++|+| ++++||+|+.||+|+|||+.++       .++..+.+|...|.+++|+|++ .+|++++.
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            3456789999999999999 9999999999999999999887       5677888999999999999998 69999999


Q ss_pred             CCeEEEeeCCCCccccccC-CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-cCcccc-EEEEE
Q 011978          171 AGELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLA-VTCVK  247 (473)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~-v~~~~  247 (473)
                      ||.|++||+.+++...... .+|...|.++.|+|     ++..+++++.|+.|++||+++++.+..+ .+|... +.++.
T Consensus       153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (402)
T 2aq5_A          153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-----DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV  227 (402)
T ss_dssp             TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-----TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred             CCEEEEEECCCCCccEEEecCCCCCceEEEEECC-----CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence            9999999999887654432 78999999999987     4568999999999999999999999888 788776 88999


Q ss_pred             ecCCCe-EEEe---ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978          248 WGGDGV-IYTG---SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (473)
Q Consensus       248 ~~~~~~-l~s~---~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (473)
                      |++++. +++|   +.|+.|++||+++++....                                               
T Consensus       228 ~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~-----------------------------------------------  260 (402)
T 2aq5_A          228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLS-----------------------------------------------  260 (402)
T ss_dssp             ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE-----------------------------------------------
T ss_pred             EcCCCcEEEEeccCCCCceEEEEcCccccCCce-----------------------------------------------
Confidence            999885 5556   5899999999876432100                                               


Q ss_pred             ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE-EECCCcEEEEeCCCCce-EEEeeC-
Q 011978          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKF-VAVFRG-  400 (473)
Q Consensus       324 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las-gs~d~~v~lwd~~~~~~-~~~~~~-  400 (473)
                                                    .....|...+.+++|+|++++|++ |+.|+.|++||+.+++. +..+.. 
T Consensus       261 ------------------------------~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~  310 (402)
T 2aq5_A          261 ------------------------------LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF  310 (402)
T ss_dssp             ------------------------------EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred             ------------------------------EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence                                          001123446788999999999975 55799999999998873 444444 


Q ss_pred             -CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 011978          401 -HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL  436 (473)
Q Consensus       401 -h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~  436 (473)
                       |.++|.+++|+|++.++++  .|+.+++|++.+++.
T Consensus       311 ~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          311 SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             ccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence             4589999999999998874  567999999987543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.4e-30  Score=247.68  Aligned_cols=304  Identities=13%  Similarity=0.145  Sum_probs=235.5

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE-EEEecCCeEEEeeCCCCccccccCCCcCCcEEEE
Q 011978          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (473)
Q Consensus       121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i  199 (473)
                      ..+++++.|+.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.... +..+ ..+.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-~~~~-~~v~~~   79 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-VPAG-SSPQGV   79 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-EECS-SSEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-EECC-CCccce
Confidence            357888899999999999998887777665 48999999999987 5677899999999998876543 2223 378999


Q ss_pred             EeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-E-EEeecCCeEEEEECCCCceeee
Q 011978          200 SWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCTIKVWETTQGKLIRE  276 (473)
Q Consensus       200 ~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~i~~wd~~~~~~~~~  276 (473)
                      .|+|     ++.++ ++++.++.|++||+.+++.+..+..+. .+.+++|++++. + ++++.|+.|++||+.+++.+..
T Consensus        80 ~~sp-----dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           80 AVSP-----DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             EECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EECC-----CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            9887     34455 556677999999999999888776554 689999999874 4 6888899999999999988887


Q ss_pred             eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee
Q 011978          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM  356 (473)
Q Consensus       277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  356 (473)
                      +..+.. +..++++++.                                   ...+++++.++.+++||+.....  ...
T Consensus       154 ~~~~~~-~~~~~~~~dg-----------------------------------~~l~~~~~~~~~v~~~d~~~~~~--~~~  195 (391)
T 1l0q_A          154 VSVGRS-PKGIAVTPDG-----------------------------------TKVYVANFDSMSISVIDTVTNSV--IDT  195 (391)
T ss_dssp             EECCSS-EEEEEECTTS-----------------------------------SEEEEEETTTTEEEEEETTTTEE--EEE
T ss_pred             EecCCC-cceEEECCCC-----------------------------------CEEEEEeCCCCEEEEEECCCCeE--EEE
Confidence            766543 4666666542                                   12346788899999999865432  222


Q ss_pred             cCcccceeEEEECCCCcEEEEEE---CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE-EEEeCCCcEEEEECC
Q 011978          357 TGHQQLVNHVYFSPDGQWVASAS---FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL-LSGSKDSTLKVWDIR  432 (473)
Q Consensus       357 ~~~~~~v~~v~~sp~g~~lasgs---~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l-~s~s~Dg~i~iwd~~  432 (473)
                      ..+...+.+++|+|++++|++++   .++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.
T Consensus       196 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            33456789999999999999888   68999999999999988888765 57899999999977 677889999999999


Q ss_pred             CCceeecccccCCCEE---------------EEEEeeCC----------CEEEEEeCCCcEEecc
Q 011978          433 TQKLKQDLPGHADEVF---------------AVDWSPDG----------EKVASGGKDRVLKLWM  472 (473)
Q Consensus       433 ~~~~~~~~~~h~~~i~---------------~l~~s~d~----------~~l~s~~~D~~i~~w~  472 (473)
                      +++....+..|..+..               ...|+.+.          ..+.+.+.|...++|.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~  339 (391)
T 1l0q_A          275 TNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWD  339 (391)
T ss_dssp             TTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEE
T ss_pred             CCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEE
Confidence            9888777765543311               11233322          3467777888999996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7e-32  Score=251.80  Aligned_cols=247  Identities=12%  Similarity=0.063  Sum_probs=201.6

Q ss_pred             cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc--ccccCCCcCCcEEEEEeceeccCCCCc-eEEEeeCCCcEE
Q 011978          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDAR  223 (473)
Q Consensus       147 ~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~-~~~s~s~dg~i~  223 (473)
                      .+|...|.+++|+|++++|++++.||.|++|++.+++.  ......+|...|.++.|.|     ++. .+++++.||.|+
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-----NTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-----SSSEEEEEEETTSCEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-----CCCcEEEEEcCCCeEE
Confidence            47999999999999999999999999999999987761  1123458899999999988     456 799999999999


Q ss_pred             EEEC-CCCeEEEEecC--ccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978          224 IWDV-SLRKCVICLSG--HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (473)
Q Consensus       224 iwd~-~~~~~~~~~~~--h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (473)
                      +||+ ..++. ..+.+  |...|.+++|++...+++++.|+.|++||+++...-.        +.               
T Consensus        83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------~~---------------  138 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV--------IA---------------  138 (342)
T ss_dssp             EECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC--------EE---------------
T ss_pred             EEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccccc--------cc---------------
Confidence            9999 77755 66778  9999999999985579999999999999976410000        00               


Q ss_pred             cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC
Q 011978          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (473)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~  380 (473)
                                                               ..      ..+...+ .|...+.+++|+|++  +++++.
T Consensus       139 -----------------------------------------~~------~~~~~~~-~~~~~v~~~~~~~~~--l~~~~~  168 (342)
T 1yfq_A          139 -----------------------------------------VK------NLNSNNT-KVKNKIFTMDTNSSR--LIVGMN  168 (342)
T ss_dssp             -----------------------------------------EE------ESCSSSS-SSCCCEEEEEECSSE--EEEEES
T ss_pred             -----------------------------------------cc------CCeeeEE-eeCCceEEEEecCCc--EEEEeC
Confidence                                                     00      0000011 155678999999987  999999


Q ss_pred             CCcEEEEeCCC-Cc--eEEEeeCCccCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC------ceeecccccCC-----
Q 011978          381 DKSIKLWNGTT-GK--FVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIRTQ------KLKQDLPGHAD-----  445 (473)
Q Consensus       381 d~~v~lwd~~~-~~--~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~i~iwd~~~~------~~~~~~~~h~~-----  445 (473)
                      |+.|++||+++ +.  .......|...|.+++|+| +++++++++.||.|++|++...      +....+.+|..     
T Consensus       169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
T 1yfq_A          169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT  248 (342)
T ss_dssp             TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred             CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccc
Confidence            99999999988 54  3345557888999999999 9999999999999999999876      66667777755     


Q ss_pred             ----CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          446 ----EVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       446 ----~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                          .|.+++|+|++++|++++.|+.|++|+
T Consensus       249 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             SSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             ccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence                999999999999999999999999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.7e-32  Score=259.51  Aligned_cols=263  Identities=17%  Similarity=0.148  Sum_probs=180.5

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeE-----EEcCCCCCEEEEEECC--------CCCeEEEEe
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCIAWSA--------DGKHLVSGS  169 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~l~~s~--------dg~~l~s~~  169 (473)
                      ...+|...+....+++++.+||+|+.|++|+|||..++....     .+.+|.+.|.+++|+|        ||++|++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            344566666667777888899999999999999998875432     2568999999999998        889999999


Q ss_pred             cCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE--------------
Q 011978          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC--------------  235 (473)
Q Consensus       170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~--------------  235 (473)
                      .|++|++||+.++.... .+.+|...+.++.|+|..    ..++++++.|++|++||+++++....              
T Consensus       164 ~D~tv~~Wd~~~~~~~~-~~~~~~~~v~~v~~~p~~----~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s  238 (393)
T 4gq1_A          164 DDCTLIIWRLTDEGPIL-AGYPLSSPGISVQFRPSN----PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT  238 (393)
T ss_dssp             TTSEEEEEEEETTEEEE-EEEECSSCEEEEEEETTE----EEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred             CCCeEEEEECCCCceee-eecCCCCCcEEEEECCCC----CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence            99999999998776543 345788899999999842    34799999999999999987654322              


Q ss_pred             -----------ecCccccEEEEEec-CCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978          236 -----------LSGHTLAVTCVKWG-GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       236 -----------~~~h~~~v~~~~~~-~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                                 ..+|...+.++.|. +++ .+++++.|+++++||+..++....+..+...+..+.+.++.         
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~---------  309 (393)
T 4gq1_A          239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV---------  309 (393)
T ss_dssp             EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSE---------
T ss_pred             cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc---------
Confidence                       23677788888886 566 68899999999999999887766665554444433332221         


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC--CCcEEEEEEC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASF  380 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~lasgs~  380 (473)
                                                                         .....+...+ ...++|  ++.++++|+.
T Consensus       310 ---------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~sgs~  337 (393)
T 4gq1_A          310 ---------------------------------------------------QGISLFPSLL-GACPHPRYMDYFATAHSQ  337 (393)
T ss_dssp             ---------------------------------------------------EEECSSCCSS-CCEECSSCTTEEEEEETT
T ss_pred             ---------------------------------------------------ccccccCcce-eEEEccCCCCEEEEEECC
Confidence                                                               0011111112 223443  5567888899


Q ss_pred             CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      ||.|++||..+++....+.+|..+|.+|+|||||++||+++.|| +.+|.+.
T Consensus       338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            99999999999998888888999999999999999999999776 6666553

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.4e-31  Score=242.07  Aligned_cols=204  Identities=27%  Similarity=0.357  Sum_probs=176.2

Q ss_pred             EecCccccEEEEEecCCC-eEEEeecCCeEEEEECCC--CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978          235 CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ--GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (473)
Q Consensus       235 ~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (473)
                      .+.+|...|.+++|++++ .|++|+.|++|++||+..  ++.+..+.+|...|.++++++..                  
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~------------------   65 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK------------------   65 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG------------------
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC------------------
Confidence            467899999999999988 689999999999999974  46778899999999999886420                  


Q ss_pred             HHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCC-CCeeeecCcccceeEEEECCC--CcEEEEEECCCcEEEEe
Q 011978          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWN  388 (473)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~--g~~lasgs~d~~v~lwd  388 (473)
                                      ....|++++.|+++++||..... .....+.+|...|.+++|+|+  |.+|++|+.|+.|++||
T Consensus        66 ----------------~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd  129 (297)
T 2pm7_B           66 ----------------FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE  129 (297)
T ss_dssp             ----------------GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             ----------------cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEE
Confidence                            12468999999999999987543 234556789999999999997  89999999999999999


Q ss_pred             CCCCc--eEEEeeCCccCEEEEEEecC-------------CCEEEEEeCCCcEEEEECCCCc----eeecccccCCCEEE
Q 011978          389 GTTGK--FVAVFRGHVGPVYQISWSAD-------------SRLLLSGSKDSTLKVWDIRTQK----LKQDLPGHADEVFA  449 (473)
Q Consensus       389 ~~~~~--~~~~~~~h~~~v~~v~~sp~-------------g~~l~s~s~Dg~i~iwd~~~~~----~~~~~~~h~~~i~~  449 (473)
                      ++++.  ....+.+|...|.+++|+|+             +++|++|+.|++|++||+++++    ....+.+|...|.+
T Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~  209 (297)
T 2pm7_B          130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  209 (297)
T ss_dssp             BCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             ecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence            98763  24667899999999999997             5799999999999999998765    55678899999999


Q ss_pred             EEEeeCC---CEEEEEeCCCcEEecc
Q 011978          450 VDWSPDG---EKVASGGKDRVLKLWM  472 (473)
Q Consensus       450 l~~s~d~---~~l~s~~~D~~i~~w~  472 (473)
                      ++|+|++   ++|++++.|++|+||+
T Consensus       210 v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             EEECCCCCCceEEEEEECCCcEEEEE
Confidence            9999995   8999999999999995

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=1.5e-30  Score=239.88  Aligned_cols=216  Identities=24%  Similarity=0.335  Sum_probs=175.3

Q ss_pred             ccccccCCcccEEEEEECC--CCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCC--CCeEEEEecCCe
Q 011978          100 CSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGE  173 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp--~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg~  173 (473)
                      +...+.||.+.|.+++|+|  ++++|++|+.|++|++||+.++.  +...+.+|...|.+++|+|+  +.+|++|+.|++
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence            3456789999999999986  48999999999999999998763  55667899999999999998  789999999999


Q ss_pred             EEEeeCCCCcc--ccccCCCcCCcEEEEEeceeccC------------CCCceEEEeeCCCcEEEEECCCC---eEEEEe
Q 011978          174 LQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLN------------APCRRFVSASKDGDARIWDVSLR---KCVICL  236 (473)
Q Consensus       174 i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~------------~~~~~~~s~s~dg~i~iwd~~~~---~~~~~~  236 (473)
                      |++||+.++..  ....+.+|...+.++.|.|....            ....+|++|+.|++|++||++..   +++..+
T Consensus       129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l  208 (316)
T 3bg1_A          129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL  208 (316)
T ss_dssp             EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred             EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence            99999987532  23456789999999999885311            11358999999999999999755   567788


Q ss_pred             cCccccEEEEEecCCC-----eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978          237 SGHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (473)
Q Consensus       237 ~~h~~~v~~~~~~~~~-----~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (473)
                      .+|...|.+++|++++     .|++++.|++|++||+.+.....                                    
T Consensus       209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~------------------------------------  252 (316)
T 3bg1_A          209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT------------------------------------  252 (316)
T ss_dssp             BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC------------------------------------
T ss_pred             ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc------------------------------------
Confidence            9999999999999874     68899999999999976521000                                    


Q ss_pred             HHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (473)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~  390 (473)
                                                             .....+..|...|.+++|+|++++||+|+.|++|++|+..
T Consensus       253 ---------------------------------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          253 ---------------------------------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             ---------------------------------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             ---------------------------------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence                                                   0001122355679999999999999999999999999975

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=9.7e-30  Score=245.40  Aligned_cols=279  Identities=15%  Similarity=0.129  Sum_probs=223.7

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeE-----EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      ..+.+++|+|++.++++++.|+.|++||+.+++...     .+.+|...|.+++|+|+++.+++++.|+.|++||+.+++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            345689999977778888889999999999887665     334788899999999999999999999999999998876


Q ss_pred             cccccCCCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee---
Q 011978          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS---  258 (473)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~---  258 (473)
                      ... .+..|...+.++.|+|     ++..+ ++++.|+.|++||+.+++.+..+..+ ..+.+++|++++ .+++++   
T Consensus       203 ~~~-~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~  275 (433)
T 3bws_A          203 YKA-TVDLTGKWSKILLYDP-----IRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSA  275 (433)
T ss_dssp             EEE-EEECSSSSEEEEEEET-----TTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEES
T ss_pred             EEE-EEcCCCCCeeEEEEcC-----CCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCC
Confidence            543 3457888899999987     33445 56668999999999999988877665 458999999988 577766   


Q ss_pred             -----cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          259 -----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       259 -----~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                           .|+.|++||+.+++.+..+. +...+..++++++.                                   ...++
T Consensus       276 ~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g-----------------------------------~~l~~  319 (433)
T 3bws_A          276 SNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTE-----------------------------------NKIYV  319 (433)
T ss_dssp             CTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSST-----------------------------------TEEEE
T ss_pred             CccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCC-----------------------------------CEEEE
Confidence                 48899999999987766552 33356666665542                                   12467


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC---------------CCcEEEEeCCCCceEEEe
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---------------DKSIKLWNGTTGKFVAVF  398 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~---------------d~~v~lwd~~~~~~~~~~  398 (473)
                      +++.|+.+++||....+. .. ...+...+.+++|+|+|++|++++.               ||.|++||..+++.+..+
T Consensus       320 ~~~~~~~v~v~d~~~~~~-~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          320 SDMCCSKIEVYDLKEKKV-QK-SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             EETTTTEEEEEETTTTEE-EE-EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             EecCCCEEEEEECCCCcE-EE-EecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            779999999999874332 22 2235677899999999999998876               579999999999998888


Q ss_pred             eCCccCEEEEEEecCCCEEEEEeC-CCcEEEEECCC
Q 011978          399 RGHVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRT  433 (473)
Q Consensus       399 ~~h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~  433 (473)
                      ..+ ..+.+++|+|+|++|++++. |+.|++|++..
T Consensus       398 ~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          398 EAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             ECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             cCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            764 57999999999999988875 99999999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.2e-31  Score=246.71  Aligned_cols=225  Identities=12%  Similarity=0.075  Sum_probs=179.1

Q ss_pred             CCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECC---------CCceeeeee-
Q 011978          209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT---------QGKLIRELK-  278 (473)
Q Consensus       209 ~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~---------~~~~~~~~~-  278 (473)
                      +...+++|+.||+|++||+.+++.+..+.  ...|.++.|.++  +++++.|++|++|+..         +++.+..+. 
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~  122 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV  122 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence            44689999999999999999998877665  456667777777  8999999999999765         444344443 


Q ss_pred             ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC
Q 011978          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG  358 (473)
Q Consensus       279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  358 (473)
                      .|...|.++++++..                                  ....+++++.|+++++||+............
T Consensus       123 ~~~~~v~~~~~~~~~----------------------------------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~  168 (343)
T 3lrv_A          123 DSANEIIYMYGHNEV----------------------------------NTEYFIWADNRGTIGFQSYEDDSQYIVHSAK  168 (343)
T ss_dssp             CCSSCEEEEECCC-------------------------------------CCEEEEEETTCCEEEEESSSSCEEEEECCC
T ss_pred             CCCCCEEEEEcCCCC----------------------------------CCCEEEEEeCCCcEEEEECCCCcEEEEEecC
Confidence            455678888776610                                  1346899999999999998765543223345


Q ss_pred             cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE-EEeeC-CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 011978          359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-AVFRG-HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL  436 (473)
Q Consensus       359 ~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~-~~~~~-h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~  436 (473)
                      +...+.+++|+|+|.+||+|+.||.|++||+++++.+ ..+.+ |.++|++++|+|+|.+|++++ |+.|++||+++++.
T Consensus       169 ~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~  247 (343)
T 3lrv_A          169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG  247 (343)
T ss_dssp             SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence            5667999999999999999999999999999999887 78888 999999999999999999999 55999999998876


Q ss_pred             eecccc---cCCCEE--EEEEeeCCCEEEEEeC-CCcEEecc
Q 011978          437 KQDLPG---HADEVF--AVDWSPDGEKVASGGK-DRVLKLWM  472 (473)
Q Consensus       437 ~~~~~~---h~~~i~--~l~~s~d~~~l~s~~~-D~~i~~w~  472 (473)
                      ...+..   |...+.  +++|+|+|++|++++. |+.+++|.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~  289 (343)
T 3lrv_A          248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK  289 (343)
T ss_dssp             CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence            555443   333443  5999999999999998 99999994

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=8.7e-30  Score=246.91  Aligned_cols=271  Identities=15%  Similarity=0.152  Sum_probs=206.6

Q ss_pred             ccCCcccEEEEEECCCCCeE-EEEeCCCeEEEEeCC--CCceeEEEc--CCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978          104 IAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLN--TQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~l-at~s~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      ..+|.+.|.+++|+|++++| ++|+.||.|+|||+.  ++..+..+.  .|...|.+++|+|++++|++|+.+|.+++|+
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            45789999999999999996 899999999999998  777666654  6778999999999999999999999999999


Q ss_pred             CCCCcccc---ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecCccccEEEEEecCCC-e
Q 011978          179 PQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-V  253 (473)
Q Consensus       179 ~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~  253 (473)
                      +.+++...   ..+.+|...|.++.|+|..  ..+.++++++.|++|++||+.+++++.. +.+|...|.+++|+ ++ .
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~  254 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDS--DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYL  254 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECT--TSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCC--CCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCE
Confidence            98776432   2467899999999999831  0156899999999999999999988877 66999999999999 76 6


Q ss_pred             EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      |++++.|++|++||+.+++.+..+..+.. +..+....                                  ...+..+.
T Consensus       255 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~----------------------------------~~~~~~~~  299 (450)
T 2vdu_B          255 LLSAGGDDKIFAWDWKTGKNLSTFDYNSL-IKPYLNDQ----------------------------------HLAPPRFQ  299 (450)
T ss_dssp             EEEEESSSEEEEEETTTCCEEEEEECHHH-HGGGCCTT----------------------------------SBC-----
T ss_pred             EEEEeCCCeEEEEECCCCcEeeeecchhh-hhhhhhhc----------------------------------cccccccc
Confidence            88999999999999999987776543210 00000000                                  00000000


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeC--CCC---ceEEEeeCCccCEEE
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNG--TTG---KFVAVFRGHVGPVYQ  407 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~--~~~---~~~~~~~~h~~~v~~  407 (473)
                      .                   .........+.+++|+|++++|++++ .|+.|++||+  .++   +.+..+..| +.|.+
T Consensus       300 ~-------------------~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~  359 (450)
T 2vdu_B          300 N-------------------ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVIS  359 (450)
T ss_dssp             ------------------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEE
T ss_pred             c-------------------cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEE
Confidence            0                   00001234688999999999999999 8999999999  555   667778888 88999


Q ss_pred             EEEecCCCEEEEEeC------CCcEEEEECC
Q 011978          408 ISWSADSRLLLSGSK------DSTLKVWDIR  432 (473)
Q Consensus       408 v~~sp~g~~l~s~s~------Dg~i~iwd~~  432 (473)
                      ++|+|++.++++++.      +..|.+|.+.
T Consensus       360 ~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          360 LSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            999996544444443      4568888764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=5.4e-30  Score=239.12  Aligned_cols=258  Identities=18%  Similarity=0.289  Sum_probs=192.9

Q ss_pred             ccccccCCcccEEEEEECC--CCCeEEEEeCCCeEEEEeCCCC---------ceeEEEcCCCCCEEEEEECCC--CCeEE
Q 011978          100 CSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ---------TPMFKCTGHKNWVLCIAWSAD--GKHLV  166 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp--~~~~lat~s~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~l~~s~d--g~~l~  166 (473)
                      ....+.+|...|.+++|+|  ++++|++|+.|+.|++||+.++         .++..+..|...|.+++|+|+  +++|+
T Consensus        49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  128 (351)
T 3f3f_A           49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA  128 (351)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence            4556689999999999999  6999999999999999999876         456677899999999999999  99999


Q ss_pred             EEecCCeEEEeeCCCCccccc------------cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE--
Q 011978          167 SGSKAGELQCWDPQTGKPSGN------------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC--  232 (473)
Q Consensus       167 s~~~dg~i~iwd~~~~~~~~~------------~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~--  232 (473)
                      +++.||.|++||+.+++....            ....|...+.++.|.|..+  ....+++++.++.+.+|+...++.  
T Consensus       129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~  206 (351)
T 3f3f_A          129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF--SPEKLAVSALEQAIIYQRGKDGKLHV  206 (351)
T ss_dssp             EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSS--SCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred             EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCC--CCcEEEEecCCCcEEEEccCCCceee
Confidence            999999999999987764321            1236788899999998543  246899999999998888877764  


Q ss_pred             EEEecCccccEEEEEecCCC-----eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCccc
Q 011978          233 VICLSGHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY  307 (473)
Q Consensus       233 ~~~~~~h~~~v~~~~~~~~~-----~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  307 (473)
                      +..+.+|...|++++|++++     .+++++.||.|++||++++........+..                         
T Consensus       207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------------  261 (351)
T 3f3f_A          207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT-------------------------  261 (351)
T ss_dssp             EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred             eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccc-------------------------
Confidence            67788999999999999986     689999999999999876533221110000                         


Q ss_pred             CCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcE----EEEEECCCc
Q 011978          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW----VASASFDKS  383 (473)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~----lasgs~d~~  383 (473)
                                                                            .......++....    ...+.....
T Consensus       262 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
T 3f3f_A          262 ------------------------------------------------------NSNMFDNSADVDMDAQGRSDSNTEEK  287 (351)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------------------------ceeccCCCccccccccccccccccee
Confidence                                                                  0000001111111    122334456


Q ss_pred             EEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978          384 IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ  438 (473)
Q Consensus       384 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~  438 (473)
                      +.+|+....+.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++...
T Consensus       288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence            7777777778889999999999999999999999999999999999998765443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=6.7e-30  Score=240.56  Aligned_cols=254  Identities=17%  Similarity=0.189  Sum_probs=196.3

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEE--CCCCCeEEEEecCCeEEEeeC
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW--SADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~--s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      ..+.+|...|.+++|+|++++|++++.||.|++||+.++.... ...|...|.+++|  +|++++|++++.||.|++||+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            5678899999999999999999999999999999999887654 5679999999999  999999999999999999999


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--CccccEEEEEec--CCC---
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWG--GDG---  252 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~--~~~---  252 (473)
                      ++++.... +..+. .+.++.+.+       ..+++++.++.+++||+..........  .+...+.++.+.  ...   
T Consensus       159 ~~~~~~~~-~~~~~-~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (368)
T 3mmy_A          159 RSSNPMMV-LQLPE-RCYCADVIY-------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT  229 (368)
T ss_dssp             SCSSCSEE-EECSS-CEEEEEEET-------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred             CCCcEEEE-EecCC-CceEEEecC-------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence            88765432 33332 455554432       368889999999999998765443322  223344444443  221   


Q ss_pred             eEEEeecCCeEEEEECCCCc---eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          253 VIYTGSQDCTIKVWETTQGK---LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      .+++++.|+.|++||+....   .+..+..|...                                              
T Consensus       230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  263 (368)
T 3mmy_A          230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN----------------------------------------------  263 (368)
T ss_dssp             EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----------------------------------------------
T ss_pred             eEEEecCCCcEEEEecCCCCccccceeeeeeecc----------------------------------------------
Confidence            38899999999999988752   23333222110                                              


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~  409 (473)
                                           .......+|...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.++|.+++
T Consensus       264 ---------------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  322 (368)
T 3mmy_A          264 ---------------------GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACC  322 (368)
T ss_dssp             -------------------------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEE
T ss_pred             ---------------------cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEE
Confidence                                 00011234456799999999999999999999999999999999999999999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECC
Q 011978          410 WSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       410 ~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      |+|+|++|++++.|+..+.|++.
T Consensus       323 ~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          323 FNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             ECTTSSCEEEEECCCSTTCGGGC
T ss_pred             ECCCCCeEEEEeccccccccccc
Confidence            99999999999999866665543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=3.5e-30  Score=230.98  Aligned_cols=230  Identities=14%  Similarity=0.159  Sum_probs=143.8

Q ss_pred             ccEEEEEECCC----CCeEEEEeCCCeEEEEeCCCCceeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          109 EAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       109 ~~V~~~~~sp~----~~~lat~s~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      ..|.+++|+||    ++++++++.  .+++|++.+++.+.. ..+|...|..++|+|+|+.+.                 
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-----------------  172 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-----------------  172 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE-----------------
T ss_pred             cceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceee-----------------
Confidence            35555556666    555665552  355565554444333 234555555555555544433                 


Q ss_pred             cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc---ccEEEEEecCCCe-EEEeec
Q 011978          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT---LAVTCVKWGGDGV-IYTGSQ  259 (473)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~-l~s~~~  259 (473)
                          .+.+|...+..++|+|..  .++..+++++.|++|+|||+.+++++.++.+|.   ..+.+++|+|++. +++++.
T Consensus       173 ----s~~~~~~~v~~l~fs~~~--g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~  246 (356)
T 2w18_A          173 ----NQFLMPPEETILTFAEVQ--GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH  246 (356)
T ss_dssp             ----EEEECCCSSCEEEEEEEE--TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred             ----eeccCCCceeeEEeeccC--CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence                233566667777777632  245689999999999999999999999998754   3677788999885 333332


Q ss_pred             CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  339 (473)
                      +..  +|+                                                                +++|+.|+
T Consensus       247 ~~~--~w~----------------------------------------------------------------laSGs~D~  260 (356)
T 2w18_A          247 PCA--KES----------------------------------------------------------------ESLRSPVF  260 (356)
T ss_dssp             -----------------------------------------------------------------------------CCE
T ss_pred             CCC--cce----------------------------------------------------------------eeccCCCc
Confidence            211  111                                                                33444455


Q ss_pred             eEEEEeCCCCCCCeee----ecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE-EEEEecCC
Q 011978          340 TMFLWEPAVSKQPKTR----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY-QISWSADS  414 (473)
Q Consensus       340 ~i~iwd~~~~~~~~~~----~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~g  414 (473)
                      ++++||+...+.....    ..+|...+.+..+  ++.++|+|+.|++|+|||+.+++++.++++|...+. .++|||||
T Consensus       261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG  338 (356)
T 2w18_A          261 QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD  338 (356)
T ss_dssp             EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred             EEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence            5555554322211100    1234333333333  378999999999999999999999999999987655 58999999


Q ss_pred             CEEEEEeCCCcEEEEEC
Q 011978          415 RLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd~  431 (473)
                      ++|++|+.|++|||||+
T Consensus       339 ~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          339 SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SEEEEECTTSCEEEEEE
T ss_pred             CEEEEEECCCcEEEecC
Confidence            99999999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=2.2e-28  Score=240.94  Aligned_cols=317  Identities=13%  Similarity=0.070  Sum_probs=236.2

Q ss_pred             EECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC--CCCccccccCCCc
Q 011978          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP--QTGKPSGNPLSGH  192 (473)
Q Consensus       115 ~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~  192 (473)
                      +|+|++..+++++.|++|.+||..+++.+..+..+.. +.+++|+|||++|++++.|+.|.+||+  .+++.... +. +
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~-i~-~  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE-IK-I  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE-EE-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE-Ee-c
Confidence            4889999999999999999999999988877773333 899999999999999999999999999  77765443 22 3


Q ss_pred             CCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCCCeEEEEecCc----------cc-cEEEEEecCCC--eEEEee
Q 011978          193 KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGH----------TL-AVTCVKWGGDG--VIYTGS  258 (473)
Q Consensus       193 ~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~~~~~~~h----------~~-~v~~~~~~~~~--~l~s~~  258 (473)
                      ......+.|+|.. ..+++++++++ .+++|.+||..+++++..+..+          .. .+.++.+++++  .+++..
T Consensus       221 g~~p~~va~sp~~-~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          221 GIEARSVESSKFK-GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CSEEEEEEECCST-TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCcceEEeCCCc-CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            3456777776510 00456777776 5899999999999988877642          22 68889999865  466778


Q ss_pred             cCCeEEEEECCCCceee--eeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          259 QDCTIKVWETTQGKLIR--ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      .++.|.+||..+++.+.  .+ .++..+..++++++..                                   ..++++.
T Consensus       300 ~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~-----------------------------------~l~va~~  343 (543)
T 1nir_A          300 ETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHR-----------------------------------YFMTAAN  343 (543)
T ss_dssp             TTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSC-----------------------------------EEEEEEG
T ss_pred             CCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCC-----------------------------------EEEEEec
Confidence            89999999998765443  22 2233344444444311                                   1345666


Q ss_pred             CCceEEEEeCCCCCCCeeeecC---cccceeEEEECCC-CcEEEEEE-CCCcEEEEeCCC-------CceEEEeeCCccC
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPD-GQWVASAS-FDKSIKLWNGTT-------GKFVAVFRGHVGP  404 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~v~~sp~-g~~lasgs-~d~~v~lwd~~~-------~~~~~~~~~h~~~  404 (473)
                      .+++|.+||....+.......+   |......+ ++|+ |.++++++ .|++|.+||..+       ++++.++.+|.+.
T Consensus       344 ~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~  422 (543)
T 1nir_A          344 NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG  422 (543)
T ss_dssp             GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred             CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence            7899999998765432222211   44333333 5777 67777776 589999999988       8999999999888


Q ss_pred             EEEEEEecCCCEEEEEe-------CCCcEEEEECCCCcee-ecc--------cccCCCEEEEEEeeCCCEEEEE-----e
Q 011978          405 VYQISWSADSRLLLSGS-------KDSTLKVWDIRTQKLK-QDL--------PGHADEVFAVDWSPDGEKVASG-----G  463 (473)
Q Consensus       405 v~~v~~sp~g~~l~s~s-------~Dg~i~iwd~~~~~~~-~~~--------~~h~~~i~~l~~s~d~~~l~s~-----~  463 (473)
                      +..++|+|+|++|++++       .+++|.+||+.+++.. ..+        ..+...+..+.|+|||+.|.++     +
T Consensus       423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~  502 (543)
T 1nir_A          423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN  502 (543)
T ss_dssp             CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTT
T ss_pred             ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCC
Confidence            89999999999999987       2779999999987765 332        4566789999999999999865     2


Q ss_pred             CCCcEEecc
Q 011978          464 KDRVLKLWM  472 (473)
Q Consensus       464 ~D~~i~~w~  472 (473)
                      .|+.|.||+
T Consensus       503 ~~~~i~v~D  511 (543)
T 1nir_A          503 DSSALVVVD  511 (543)
T ss_dssp             SCCEEEEEE
T ss_pred             CCCeEEEEE
Confidence            479999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.2e-27  Score=225.63  Aligned_cols=308  Identities=18%  Similarity=0.208  Sum_probs=227.8

Q ss_pred             cccccCCcccEEEEEECCCCCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE-ecCCeEEEee
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWD  178 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~l-at~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~-~~dg~i~iwd  178 (473)
                      ...+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|+.+ +.++.|++||
T Consensus        25 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d  102 (391)
T 1l0q_A           25 TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID  102 (391)
T ss_dssp             EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE
Confidence            34445554 58999999999987 566789999999999988877776555 89999999999988654 4679999999


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eE-E
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI-Y  255 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l-~  255 (473)
                      +.+++.... +. +...+.++.|+|     ++..+ ++++.++.|++||+.+++.+..+..+. .+.+++|++++ .+ +
T Consensus       103 ~~~~~~~~~-~~-~~~~~~~~~~s~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~  174 (391)
T 1l0q_A          103 TTSNTVAGT-VK-TGKSPLGLALSP-----DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYV  174 (391)
T ss_dssp             TTTTEEEEE-EE-CSSSEEEEEECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEE
T ss_pred             CCCCeEEEE-Ee-CCCCcceEEECC-----CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEE
Confidence            998876433 22 344678888876     34445 788889999999999999888877654 56899999988 34 5


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +++.|+.|++||+++++....+.. ...+..++++++.                                    ..++++
T Consensus       175 ~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g------------------------------------~~l~~~  217 (391)
T 1l0q_A          175 ANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEG------------------------------------TKAYVT  217 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTS------------------------------------SEEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCC------------------------------------CEEEEE
Confidence            778899999999999987776654 4466777776542                                    245555


Q ss_pred             c---CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE-EEEECCCcEEEEeCCCCceEEEeeCCccCEE---EE
Q 011978          336 S---DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFVAVFRGHVGPVY---QI  408 (473)
Q Consensus       336 ~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l-asgs~d~~v~lwd~~~~~~~~~~~~h~~~v~---~v  408 (473)
                      +   .++.+++||+.... ....+..+. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+..   .+
T Consensus       218 ~~~~~~~~v~~~d~~~~~-~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~  295 (391)
T 1l0q_A          218 NVDKYFNTVSMIDTGTNK-ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFI  295 (391)
T ss_dssp             EECSSCCEEEEEETTTTE-EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCE
T ss_pred             ecCcCCCcEEEEECCCCe-EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceee
Confidence            5   68999999986543 233344443 57899999999987 6778899999999999999888877654421   12


Q ss_pred             E------------EecCC----------CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978          409 S------------WSADS----------RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       409 ~------------~sp~g----------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      .            |+.+.          ..+...+.|.++++||+..+....    +..+  ...|+++|.+.++..
T Consensus       296 ~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~----~~~~--~~~~~~~g~y~~~~~  366 (391)
T 1l0q_A          296 GSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK----KQNP--THTYSETGIYTVRLT  366 (391)
T ss_dssp             EECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC----SSSC--EECCSSCEEEEEEEE
T ss_pred             ecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC----cCCC--eEEeCCCceEEEEEE
Confidence            2            33221          346666778899999998775421    2222  356888888877543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.96  E-value=2.3e-27  Score=252.89  Aligned_cols=354  Identities=13%  Similarity=0.129  Sum_probs=236.0

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCC------CeEEEEeCCCCceeEEEcCCCCCE-------EEEEECCCCCeEE
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGD------TTVRLWDLNTQTPMFKCTGHKNWV-------LCIAWSADGKHLV  166 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d------~~i~iwd~~~~~~~~~~~~~~~~v-------~~l~~s~dg~~l~  166 (473)
                      ....+.+|...|.+++|||||++||+++.+      ..|++||+.++. ...+..|...+       .+++|+|||+.++
T Consensus        44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~  122 (1045)
T 1k32_A           44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII  122 (1045)
T ss_dssp             CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred             cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence            345677899999999999999999988643      489999998876 45677888888       9999999999777


Q ss_pred             EEecC------CeEEEeeCCCCcccccc------------------------------------------------CCCc
Q 011978          167 SGSKA------GELQCWDPQTGKPSGNP------------------------------------------------LSGH  192 (473)
Q Consensus       167 s~~~d------g~i~iwd~~~~~~~~~~------------------------------------------------~~~~  192 (473)
                      +++.+      ..|.+|++.+++.....                                                +.+|
T Consensus       123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~  202 (1045)
T 1k32_A          123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM  202 (1045)
T ss_dssp             EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred             EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence            77644      46888887665432110                                                1123


Q ss_pred             CCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-CeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCC
Q 011978          193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQ  270 (473)
Q Consensus       193 ~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~  270 (473)
                      ...+..+.|.+     + ..+++++.++.+++|.+.. +.....+..|. .+.+.+|+++|. ++.+ .++.|++||+..
T Consensus       203 ~~~v~~~~~s~-----d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~  274 (1045)
T 1k32_A          203 STHVSSPVIVG-----H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT  274 (1045)
T ss_dssp             SSCCEEEEEET-----T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred             CCcccceEEeC-----C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence            33344444433     2 3556677788889997643 33334444444 345668888885 4444 688999998743


Q ss_pred             Cceeeeeecc-------------CceEEEEE--------ecccceeeeccccC-CCcccCCHHHHHHHHHhhhhcccCCC
Q 011978          271 GKLIRELKGH-------------GHWVNSLA--------LSTEYALRTGAFDH-TGKQYSSPEEMKKAALERYNKIKGNA  328 (473)
Q Consensus       271 ~~~~~~~~~~-------------~~~v~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
                      .+. ..+..+             ...-..+.        +.....+....... .........      ........-..
T Consensus       275 ~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~sd  347 (1045)
T 1k32_A          275 EKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPL------RIRYVRRGGDT  347 (1045)
T ss_dssp             CCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCS------CEEEEEECSSS
T ss_pred             eEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCC------cceEEeeeEcC
Confidence            332 233221             01111111        11011110000000 000000000      00000000012


Q ss_pred             CceEEEecCCceEE-EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE
Q 011978          329 PERLVSGSDDFTMF-LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (473)
Q Consensus       329 ~~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~  407 (473)
                      ...++.++.+..+. +|+.....  ...+.+|...+..++|+|||++||+++.++.|++||+.+++....+.+|.+.+.+
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~  425 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD  425 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred             CCeEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence            34577777777888 88875432  2334477788999999999999999999999999999999988888889999999


Q ss_pred             EEEecCCCEEEEEeCCC----------cEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          408 ISWSADSRLLLSGSKDS----------TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       408 v~~sp~g~~l~s~s~Dg----------~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++|||||++|++++.++          .|++||+.+++ ...+..|...+..+.|+|||++|++++.++..++|.
T Consensus       426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            99999999999887654          89999999887 567778888899999999999999999888776664

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=3.1e-27  Score=243.69  Aligned_cols=309  Identities=14%  Similarity=0.148  Sum_probs=229.8

Q ss_pred             cccEEEEEECCCCCeEEEEeC-CC-----eEEEEeCCCCceeEEEcCCCC------------------------CEEEEE
Q 011978          108 TEAVLSVAFSPDGRQLASGSG-DT-----TVRLWDLNTQTPMFKCTGHKN------------------------WVLCIA  157 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~l~  157 (473)
                      ...|.+++|||||++|++++. |+     .|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456899999999999999998 88     999999998876555543322                        378999


Q ss_pred             ECCCCCeEEEEecCCeEEEeeCCCC---ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE
Q 011978          158 WSADGKHLVSGSKAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI  234 (473)
Q Consensus       158 ~s~dg~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~  234 (473)
                      |||||++|++++. +.|++||+.++   ..  ..+..|...+..+.|+|     ++++++.++ ++.|.+||+.+++...
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l~~~~~~~~~~~~SP-----DG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV--RQLTHGEGFATDAKLSP-----KGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSC--CBCCCSSSCEEEEEECT-----TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceE--EEcccCCcccccccCCC-----CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            9999999999886 99999999887   43  24566778899999987     566777776 5699999999988766


Q ss_pred             EecCcccc----------------EEEEEecCCCe-EEEeecCC---------------------------------eEE
Q 011978          235 CLSGHTLA----------------VTCVKWGGDGV-IYTGSQDC---------------------------------TIK  264 (473)
Q Consensus       235 ~~~~h~~~----------------v~~~~~~~~~~-l~s~~~d~---------------------------------~i~  264 (473)
                      ....+...                +.++.|++||. |+.++.|+                                 .|+
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            55444332                36789999984 77776665                                 788


Q ss_pred             EEECCC-Cceeeeee--ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe-----c
Q 011978          265 VWETTQ-GKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG-----S  336 (473)
Q Consensus       265 ~wd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~  336 (473)
                      +||+.+ ++......  .+...+..+++ ++..                                    .++.+     .
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~------------------------------------~l~~~~~~~~~  309 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ------------------------------------HLSFQRQSRDQ  309 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETT------------------------------------EEEEEEEETTS
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCC------------------------------------EEEEEEecccC
Confidence            999988 76544332  36677888888 7632                                    23322     2


Q ss_pred             CCceEEEEeCCCCCCCeeeecCccc----ceeEEEECCCCcEEEEEECCCcEEEEeCC-CCceEEEeeCCccCEEEE-EE
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQ----LVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQI-SW  410 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~----~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~~~~~~~~~~h~~~v~~v-~~  410 (473)
                      .+..+++||...... ......+..    .+..++|+|||+++++++.|+.++||... +++ ...+..|...|.++ .|
T Consensus       310 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~  387 (741)
T 2ecf_A          310 KKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAV  387 (741)
T ss_dssp             SEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEE
T ss_pred             CeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEE
Confidence            467899999865432 222222222    34689999999999999999988888765 445 77788888888887 59


Q ss_pred             ecCCCEEEE-EeCCC--cEEEEECCC-CceeecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978          411 SADSRLLLS-GSKDS--TLKVWDIRT-QKLKQDLPGHADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       411 sp~g~~l~s-~s~Dg--~i~iwd~~~-~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                      +|||+.|+. ++.|+  .++||++.. ++....+.. ...+..++|||||++|+....+
T Consensus       388 s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          388 DEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             ETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred             eCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecC
Confidence            999997765 44555  899999864 554556655 5678899999999998866443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=4.1e-28  Score=231.95  Aligned_cols=299  Identities=16%  Similarity=0.157  Sum_probs=229.6

Q ss_pred             ccEEEEEECCCCC-eEEEEe----CCC----eEEEEeC--CCCcee--EEEcCCCCCEEEEEECC--------------C
Q 011978          109 EAVLSVAFSPDGR-QLASGS----GDT----TVRLWDL--NTQTPM--FKCTGHKNWVLCIAWSA--------------D  161 (473)
Q Consensus       109 ~~V~~~~~sp~~~-~lat~s----~d~----~i~iwd~--~~~~~~--~~~~~~~~~v~~l~~s~--------------d  161 (473)
                      ..+...+|.+.|. .+++|+    .||    +|++||+  .+++.+  ..+.+|...+..+++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4566677888875 455775    567    8999999  888876  34778887777777664              2


Q ss_pred             CCeEEEEecC------CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC---cEEEEECCCCeE
Q 011978          162 GKHLVSGSKA------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKC  232 (473)
Q Consensus       162 g~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg---~i~iwd~~~~~~  232 (473)
                      +..++.++.+      +.|++||...+..  ..+.+|...+.++.|+|     ++.++++++.++   .|++||+.++++
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--~~l~~~~~~v~~~~~Sp-----dg~~la~~s~~~~~~~i~~~d~~tg~~  215 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ--FVVHRSPQPLMSPAWSP-----DGSKLAYVTFESGRSALVIQTLANGAV  215 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSC--EEEEEESSCEEEEEECT-----TSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCC--EEEeCCCCcceeeEEcC-----CCCEEEEEEecCCCcEEEEEECCCCcE
Confidence            6677776654      7999999975432  34567888999999987     567899998875   999999999887


Q ss_pred             EEEecCccccEEEEEecCCCe-EE-EeecCCe--EEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978          233 VICLSGHTLAVTCVKWGGDGV-IY-TGSQDCT--IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (473)
Q Consensus       233 ~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (473)
                      . .+.+|...+.+++|+|||. |+ +++.|+.  |++||+.+++. ..+..+...+.+++++|+.               
T Consensus       216 ~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg---------------  278 (415)
T 2hqs_A          216 R-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS---------------  278 (415)
T ss_dssp             E-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTS---------------
T ss_pred             E-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCC---------------
Confidence            5 4667888899999999984 55 6666654  99999988775 5666777788888887763               


Q ss_pred             CHHHHHHHHHhhhhcccCCCCceEEEecC-Cc--eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC---C
Q 011978          309 SPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---K  382 (473)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d---~  382 (473)
                                           ..++.++. ++  .+++||.....  ...+..+...+.+++|+|+|++|++++.+   .
T Consensus       279 ---------------------~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~  335 (415)
T 2hqs_A          279 ---------------------QNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ  335 (415)
T ss_dssp             ---------------------SEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCE
T ss_pred             ---------------------CEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCce
Confidence                                 23555544 44  67777876543  23445566788899999999999998865   5


Q ss_pred             cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEEECCCCceeecccccCCCEEEEEEeeCCC
Q 011978          383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE  457 (473)
Q Consensus       383 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~  457 (473)
                      .|++||+.+++.. .+..|. .+.+++|+|||++|++++.|+   .|++||+.. +....+.+|...|.+++|+|.-.
T Consensus       336 ~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          336 HIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEECCCSSSEEEEEEECCCCC
T ss_pred             EEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEeeCCCCCCcCCccccccc
Confidence            8999999988764 455554 899999999999999998877   799999974 45677888999999999999643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.6e-28  Score=247.14  Aligned_cols=221  Identities=22%  Similarity=0.332  Sum_probs=182.2

Q ss_pred             cccccccCCcccEEEEEECCC--CCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCC--CCeEEEEecCC
Q 011978           99 RCSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAG  172 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~--~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg  172 (473)
                      .+...+.+|.+.|.+++|+|+  +++|++|+.||+|++||+.++.  ....+.+|...|.+++|+|+  ++.+++|+.||
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence            345567899999999999998  9999999999999999999886  56677889999999999999  99999999999


Q ss_pred             eEEEeeCCCCcc-ccccCCCcCCcEEEEEeceecc--------CCCCceEEEeeCCCcEEEEECCCC----eEEEEecCc
Q 011978          173 ELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHL--------NAPCRRFVSASKDGDARIWDVSLR----KCVICLSGH  239 (473)
Q Consensus       173 ~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~--------~~~~~~~~s~s~dg~i~iwd~~~~----~~~~~~~~h  239 (473)
                      .|++||+.++.. ....+.+|...|.++.|.|...        ..++..+++|+.||.|++||++.+    .....+.+|
T Consensus       124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h  203 (753)
T 3jro_A          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (753)
T ss_dssp             EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence            999999987632 2234578899999999988421        113568999999999999999876    566788899


Q ss_pred             cccEEEEEecCC---C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978          240 TLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (473)
Q Consensus       240 ~~~v~~~~~~~~---~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (473)
                      ...|++++|+++   + .+++++.||.|++||+.++.....                                       
T Consensus       204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~---------------------------------------  244 (753)
T 3jro_A          204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK---------------------------------------  244 (753)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB---------------------------------------
T ss_pred             CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce---------------------------------------
Confidence            999999999998   6 588999999999999876531100                                       


Q ss_pred             HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc
Q 011978          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (473)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~  393 (473)
                                                         ........|...|.+++|+|+|++|++|+.||.|++||+..+.
T Consensus       245 -----------------------------------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          245 -----------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             -----------------------------------CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             -----------------------------------eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence                                               0001123456678999999999999999999999999998543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=7.5e-26  Score=222.88  Aligned_cols=310  Identities=14%  Similarity=0.124  Sum_probs=228.8

Q ss_pred             ccccccc-CCcccEEEEEECCCCCeEEEEeCCCeEEEEeC--CCCceeEEEcCCCCCEEEEEECC----CCCeEEEEec-
Q 011978           99 RCSATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL--NTQTPMFKCTGHKNWVLCIAWSA----DGKHLVSGSK-  170 (473)
Q Consensus        99 ~~~~~~~-gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~--~~~~~~~~~~~~~~~v~~l~~s~----dg~~l~s~~~-  170 (473)
                      ++..++. ||.  +..++|+|||++|++++.|++|++||+  .+++.+..+. +...+..++|+|    ||++|++++. 
T Consensus       170 ~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~  246 (543)
T 1nir_A          170 KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYW  246 (543)
T ss_dssp             CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEcc
Confidence            3455555 444  889999999999999999999999999  7887777766 445689999999    9999999885 


Q ss_pred             CCeEEEeeCCCCccccccCC-C--------cC-CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE--EecC
Q 011978          171 AGELQCWDPQTGKPSGNPLS-G--------HK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSG  238 (473)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~-~--------~~-~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~--~~~~  238 (473)
                      +++|.+||..+++....... +        |. ..+.++.++|.    ....+++...++.|.+||..+.+.+.  .+ .
T Consensus       247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~----~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~  321 (543)
T 1nir_A          247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE----HPEFIVNVKETGKVLLVNYKDIDNLTVTSI-G  321 (543)
T ss_dssp             SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS----SSEEEEEETTTTEEEEEECTTSSSCEEEEE-E
T ss_pred             CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC----CCEEEEEECCCCeEEEEEecCCCcceeEEe-c
Confidence            89999999988876443211 1        22 26777877763    23466778889999999998765433  22 3


Q ss_pred             ccccEEEEEecCCCe-EE-EeecCCeEEEEECCCCceeeeeec----cCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978          239 HTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (473)
Q Consensus       239 h~~~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (473)
                      +...+.++.|++++. ++ ++..+++|.+||..+++++..+..    |......+ ++++                    
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~--------------------  380 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK--------------------  380 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT--------------------
T ss_pred             cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC--------------------
Confidence            445677889999984 55 455689999999999998877653    22111111 1111                    


Q ss_pred             HHHHHHhhhhcccCCCCceEEEec-CCceEEEEeCCCC------CCCeeeecCcccceeEEEECCCCcEEEEEE------
Q 011978          313 MKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWVASAS------  379 (473)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~------~~~~~~~~~~~~~v~~v~~sp~g~~lasgs------  379 (473)
                                     ....++++. .|++|.+||....      ......+.+|...+..++|+|+|++|++++      
T Consensus       381 ---------------~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~  445 (543)
T 1nir_A          381 ---------------YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  445 (543)
T ss_dssp             ---------------TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred             ---------------CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence                           012356654 6899999998762      234456677877888899999999999987      


Q ss_pred             -CCCcEEEEeCCCCceE-EEe--------eCCccCEEEEEEecCCCEEEEEe-----CCCcEEEEECCCCceeecccccC
Q 011978          380 -FDKSIKLWNGTTGKFV-AVF--------RGHVGPVYQISWSADSRLLLSGS-----KDSTLKVWDIRTQKLKQDLPGHA  444 (473)
Q Consensus       380 -~d~~v~lwd~~~~~~~-~~~--------~~h~~~v~~v~~sp~g~~l~s~s-----~Dg~i~iwd~~~~~~~~~~~~h~  444 (473)
                       .+++|.+||..+++.. ..+        ..+...+..++|+|+|+.|.++.     .|+.|.|||..+++++.+++.+.
T Consensus       446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~  525 (543)
T 1nir_A          446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR  525 (543)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCC
Confidence             2679999999998876 443        34567899999999999888662     47999999999999988887542


Q ss_pred             CCEEEEEEeeCCCE
Q 011978          445 DEVFAVDWSPDGEK  458 (473)
Q Consensus       445 ~~i~~l~~s~d~~~  458 (473)
                        +    .+|+|++
T Consensus       526 --~----~~p~g~~  533 (543)
T 1nir_A          526 --L----ITPTGKF  533 (543)
T ss_dssp             --C----CSEEEEE
T ss_pred             --c----cCCCeee
Confidence              1    3566654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=1.8e-26  Score=237.34  Aligned_cols=311  Identities=14%  Similarity=0.121  Sum_probs=217.6

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC---CEEEEEECCCCCeEEEEecC---------CeEEEe
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSKA---------GELQCW  177 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~---~v~~l~~s~dg~~l~s~~~d---------g~i~iw  177 (473)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+..|..   .|.+++|||||++|++++.+         +.+++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            3567899999998776 7899999999999887766766654   49999999999999998764         788999


Q ss_pred             eCCCCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE-------------
Q 011978          178 DPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-------------  243 (473)
Q Consensus       178 d~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v-------------  243 (473)
                      |+.+++... ....+|...+..+.|+|     ++++++.++. +.|++||+.+++.......+...+             
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SP-----dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee  170 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGP-----KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE  170 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCS-----STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred             ECCCCceEeccCCccccccccccEECC-----CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence            999886521 11234444566677776     6678888776 899999999887766555544333             


Q ss_pred             -----EEEEecCCCe-EEEeecCC----------------------------------eEEEEECCCCceeeeeecc---
Q 011978          244 -----TCVKWGGDGV-IYTGSQDC----------------------------------TIKVWETTQGKLIRELKGH---  280 (473)
Q Consensus       244 -----~~~~~~~~~~-l~s~~~d~----------------------------------~i~~wd~~~~~~~~~~~~~---  280 (473)
                           .++.|+|||. |+.++.|+                                  .|++||+.+++....+..+   
T Consensus       171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~  250 (723)
T 1xfd_A          171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP  250 (723)
T ss_dssp             TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred             eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence                 7899999984 66665442                                  7899999888765555543   


Q ss_pred             ---CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe----cCCceEEEEeCCCCCCCe
Q 011978          281 ---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG----SDDFTMFLWEPAVSKQPK  353 (473)
Q Consensus       281 ---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~  353 (473)
                         ...+..++++|+..+                                    ++..    ..+..+++||........
T Consensus       251 ~~~~~~~~~~~~SpDg~~------------------------------------l~~~~~~~~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          251 RMREYYITMVKWATSTKV------------------------------------AVTWLNRAQNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             GGSSEEEEEEEESSSSEE------------------------------------EEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             CCccceeEEEEEeCCCeE------------------------------------EEEEEcCCCCeEEEEEEeCCCCcceE
Confidence               567788888876432                                    3222    234678999986554222


Q ss_pred             eeecCcccce----eEEEECCCCcEEEE--EECCC------cEEEEe-CCCCc--eEEEeeCCccCEEE-EEEecCCCEE
Q 011978          354 TRMTGHQQLV----NHVYFSPDGQWVAS--ASFDK------SIKLWN-GTTGK--FVAVFRGHVGPVYQ-ISWSADSRLL  417 (473)
Q Consensus       354 ~~~~~~~~~v----~~v~~sp~g~~las--gs~d~------~v~lwd-~~~~~--~~~~~~~h~~~v~~-v~~sp~g~~l  417 (473)
                      .....+...+    ..++|+|||+.|+.  +..++      .|.+|| ...++  +...+..+...+.. ++|+|||+.|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l  374 (723)
T 1xfd_A          295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI  374 (723)
T ss_dssp             EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred             EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEE
Confidence            2222233333    37899999997775  44566      577777 34444  14444433344554 7999999999


Q ss_pred             EEEeCC---CcEEEEECCCCc--eeecccc---cCCCEEEEEEeeCCCEEEEEe
Q 011978          418 LSGSKD---STLKVWDIRTQK--LKQDLPG---HADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       418 ~s~s~D---g~i~iwd~~~~~--~~~~~~~---h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      +..+.+   +.++||++....  ....+..   |...+..++|||||++|+...
T Consensus       375 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          375 YFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             EEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             EEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence            876655   789999986432  3334443   566788999999999887653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=3.1e-25  Score=212.02  Aligned_cols=278  Identities=17%  Similarity=0.154  Sum_probs=205.4

Q ss_pred             CEEEEEECCCCC-eEEEEe----cCC----eEEEeeC--CCCccc-cccCCCcCCcEEEEEeceec---------cCCCC
Q 011978          152 WVLCIAWSADGK-HLVSGS----KAG----ELQCWDP--QTGKPS-GNPLSGHKKWITGISWEPVH---------LNAPC  210 (473)
Q Consensus       152 ~v~~l~~s~dg~-~l~s~~----~dg----~i~iwd~--~~~~~~-~~~~~~~~~~v~~i~~~~~~---------~~~~~  210 (473)
                      .+...+|++.|. .+++|+    .+|    .+++||+  .+++.+ ...+.+|...+..+.+.+..         .....
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~  143 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR  143 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            455667777775 444765    457    8999999  887754 23355666555544443310         00114


Q ss_pred             ceEEEeeCC------CcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC---eEEEEECCCCceeeeeecc
Q 011978          211 RRFVSASKD------GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC---TIKVWETTQGKLIRELKGH  280 (473)
Q Consensus       211 ~~~~s~s~d------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~---~i~~wd~~~~~~~~~~~~~  280 (473)
                      .+++.++.+      +.|++||+.. .....+.+|...+.+++|+|+| .|++++.|+   .|++||+.+++.. .+..+
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~  221 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF  221 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred             CEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence            567666654      7999999974 4456677888999999999998 477787775   9999999998764 46667


Q ss_pred             CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE-EecCCc--eEEEEeCCCCCCCeeeec
Q 011978          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDF--TMFLWEPAVSKQPKTRMT  357 (473)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~  357 (473)
                      ...+.+++++|+..                                    .++ +++.++  .|++||+....  ...+.
T Consensus       222 ~~~~~~~~~spdg~------------------------------------~la~~~~~~g~~~i~~~d~~~~~--~~~l~  263 (415)
T 2hqs_A          222 PRHNGAPAFSPDGS------------------------------------KLAFALSKTGSLNLYVMDLASGQ--IRQVT  263 (415)
T ss_dssp             SSCEEEEEECTTSS------------------------------------EEEEEECTTSSCEEEEEETTTCC--EEECC
T ss_pred             CCcccCEEEcCCCC------------------------------------EEEEEEecCCCceEEEEECCCCC--EEeCc
Confidence            77888888887632                                    244 555554  49999976543  35667


Q ss_pred             CcccceeEEEECCCCcEEEEEECC-C--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEEC
Q 011978          358 GHQQLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDI  431 (473)
Q Consensus       358 ~~~~~v~~v~~sp~g~~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~  431 (473)
                      .|...+.+++|+|||++|++++.+ +  .|++||..+++. ..+..|...+.+++|+|||++|++++.+   ..|++||+
T Consensus       264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence            788889999999999999988864 4  677889888764 3455567789999999999999988764   58999999


Q ss_pred             CCCceeecccccCCCEEEEEEeeCCCEEEEEeCCC---cEEecc
Q 011978          432 RTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR---VLKLWM  472 (473)
Q Consensus       432 ~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~---~i~~w~  472 (473)
                      .+++.. .+..|. .+.+++|+|||++|++++.|+   .|.+|.
T Consensus       343 ~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          343 ATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS  384 (415)
T ss_dssp             TTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence            988764 455554 789999999999999998877   688775

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=1.7e-24  Score=230.91  Aligned_cols=317  Identities=14%  Similarity=0.088  Sum_probs=238.2

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcC-----------CCCCEEEEEEC-CCCCeEEE
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-----------HKNWVLCIAWS-ADGKHLVS  167 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~-----------~~~~v~~l~~s-~dg~~l~s  167 (473)
                      ....+.+|. .+..++|+|||++|+++. ++.|++||+.+.. +..+..           |...+.+++|+ |||++|++
T Consensus       237 ~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~  313 (1045)
T 1k32_A          237 DLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF  313 (1045)
T ss_dssp             SCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred             cceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEE
Confidence            344455555 466779999999999874 8999999995443 334443           33468999999 99999998


Q ss_pred             EecCCeEEEeeCCCCccccccCCCcCC-cEEEEEeceeccCCCCceEEEeeCCCcEE-EEECCCCeEEEEecCccccEEE
Q 011978          168 GSKAGELQCWDPQTGKPSGNPLSGHKK-WITGISWEPVHLNAPCRRFVSASKDGDAR-IWDVSLRKCVICLSGHTLAVTC  245 (473)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~~~~~s~s~dg~i~-iwd~~~~~~~~~~~~h~~~v~~  245 (473)
                      ++ ++.+.+|+..++...  .+..|.. .+..+.|+      ++..++.++.+..+. +||+..++... +.+|...+.+
T Consensus       314 ~~-~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~s------dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~  383 (1045)
T 1k32_A          314 VS-RGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGD------TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFA  383 (1045)
T ss_dssp             EE-TTEEEEECTTSSBEE--ECSCCSCEEEEEECSS------SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEE
T ss_pred             EE-cCEEEEEcCCCCceE--EccCCCcceEEeeeEc------CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceee
Confidence            88 889999999877643  2455655 66666654      456788888888888 99998776554 3488889999


Q ss_pred             EEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcc
Q 011978          246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (473)
Q Consensus       246 ~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (473)
                      ++|++|| .|++++.++.|++||+.+++....+..|...+..++++|+..                              
T Consensus       384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~------------------------------  433 (1045)
T 1k32_A          384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR------------------------------  433 (1045)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC------------------------------
T ss_pred             eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCC------------------------------
Confidence            9999998 478899999999999999988777777877788888887632                              


Q ss_pred             cCCCCceEEEecC----------CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc-
Q 011978          325 KGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-  393 (473)
Q Consensus       325 ~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~-  393 (473)
                            .++.++.          ++.+++||.....  ...+..|...+..++|+|||++|++++.++..++|+..... 
T Consensus       434 ------~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~  505 (1045)
T 1k32_A          434 ------FIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  505 (1045)
T ss_dssp             ------EEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             ------eEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence                  3444433          3589999986543  45566777888999999999999999988777777643221 


Q ss_pred             ------------------------------------------eEEEeeCCccCEEEEEEecCCCEEEE------------
Q 011978          394 ------------------------------------------FVAVFRGHVGPVYQISWSADSRLLLS------------  419 (473)
Q Consensus       394 ------------------------------------------~~~~~~~h~~~v~~v~~sp~g~~l~s------------  419 (473)
                                                                .+..+..|.+.+..++++|||.++++            
T Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~  585 (1045)
T 1k32_A          506 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ  585 (1045)
T ss_dssp             ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHH
T ss_pred             ccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCccccccc
Confidence                                                      11233446678999999999987775            


Q ss_pred             -EeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          420 -GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       420 -~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                       .+.+..|++||+.+++... +.   ..+..++|||||++|++++.| .+++|.
T Consensus       586 ~~~~~~~l~~~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d  634 (1045)
T 1k32_A          586 GAPEKGVLLKYDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTF  634 (1045)
T ss_dssp             CCCCCEEEEEEETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEE
T ss_pred             ccCCCceEEEEECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEe
Confidence             1234578889998876532 22   458899999999999999877 788885

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=4.6e-25  Score=200.72  Aligned_cols=254  Identities=19%  Similarity=0.235  Sum_probs=187.3

Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC-CccccccCCCc-CCcEEEEEec
Q 011978          125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-GKPSGNPLSGH-KKWITGISWE  202 (473)
Q Consensus       125 t~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~-~~~v~~i~~~  202 (473)
                      .++.|++|++||+.+++.. .+..|...|.+++|+|||++|++++ ++.|++||+.+ ++.... ...+ ...+.++.|+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV-DTGFATICNNDHGIS   93 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC-CCTTCCCBCSCCEEC
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe-ccccccccccceEEC
Confidence            3467899999999988755 3455788999999999999999876 78999999988 765432 3333 3567777777


Q ss_pred             eeccCCCCceEEEee--CCCcEEEEE--CCCCeEEEEecCccccEEEEEecCCCe-EE-EeecCCeEEEEECCCCceeee
Q 011978          203 PVHLNAPCRRFVSAS--KDGDARIWD--VSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRE  276 (473)
Q Consensus       203 ~~~~~~~~~~~~s~s--~dg~i~iwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~~~~~~~~  276 (473)
                      |     ++.++++++  .++..++|.  ...+. ...+..+. .+.+++|++++. ++ +++.|+.+++|++....    
T Consensus        94 p-----dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~----  162 (297)
T 2ojh_A           94 P-----DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS----  162 (297)
T ss_dssp             T-----TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT----
T ss_pred             C-----CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC----
Confidence            6     556788887  334555554  44444 23333333 488899999883 44 77888988888753210    


Q ss_pred             eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee
Q 011978          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM  356 (473)
Q Consensus       277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  356 (473)
                                                                                                .....+
T Consensus       163 --------------------------------------------------------------------------~~~~~~  168 (297)
T 2ojh_A          163 --------------------------------------------------------------------------GVETRL  168 (297)
T ss_dssp             --------------------------------------------------------------------------CCEEEC
T ss_pred             --------------------------------------------------------------------------CcceEc
Confidence                                                                                      000111


Q ss_pred             cCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCC-CCceEEEeeCCccCEEEEEEecCCCEEEEEeCC-----------
Q 011978          357 TGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGT-TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD-----------  423 (473)
Q Consensus       357 ~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~-~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D-----------  423 (473)
                      ..+...+.+++|+|+|++|+.++ .|+.+++|++. .+..+..+..|...+.+++|+|+|++|++++.+           
T Consensus       169 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  248 (297)
T 2ojh_A          169 THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD  248 (297)
T ss_dssp             CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred             ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence            22345678899999999888776 58999999886 556677778888889999999999999988876           


Q ss_pred             CcEEEEECCCCce--eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          424 STLKVWDIRTQKL--KQDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       424 g~i~iwd~~~~~~--~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      +.|++||+.+++.  +..+.+|...+..++|+|||++|++++.|.
T Consensus       249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            5699999988765  334557788899999999999999888764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=1.6e-24  Score=222.18  Aligned_cols=310  Identities=14%  Similarity=0.148  Sum_probs=215.0

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-EEEcCCC-----------------CCEEEEEECCCCCeEEEEecCC
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHK-----------------NWVLCIAWSADGKHLVSGSKAG  172 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~l~~s~dg~~l~s~~~dg  172 (473)
                      +..+.|.  |..+++++.|+ | +||+.+++.+ ..+..|.                 ..|.+++|||| +.++.+ .++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            3446777  67788888888 8 9999988762 2222222                 46999999999 666655 459


Q ss_pred             eEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-----CeEEEEecCcccc-----
Q 011978          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLA-----  242 (473)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-----~~~~~~~~~h~~~-----  242 (473)
                      .|++||+.+++...  +..+...+..+.|+|     ++.++++ +.++.|++||+.+     ++.......+...     
T Consensus       102 ~i~~~d~~~~~~~~--l~~~~~~~~~~~~Sp-----dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~  173 (706)
T 2z3z_A          102 GLVGFDMLARKVTY--LFDTNEETASLDFSP-----VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ  173 (706)
T ss_dssp             EEEEEETTTTEEEE--EECCTTCCTTCEECT-----TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred             EEEEEECCCCceEE--ccCCcccccCCcCCC-----CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence            99999998876432  334455566677766     5667777 4789999999988     7766544444333     


Q ss_pred             ---------EEEEEecCCCe-EEEee---------------------------------cCCeEEEEECCCCceeeeee-
Q 011978          243 ---------VTCVKWGGDGV-IYTGS---------------------------------QDCTIKVWETTQGKLIRELK-  278 (473)
Q Consensus       243 ---------v~~~~~~~~~~-l~s~~---------------------------------~d~~i~~wd~~~~~~~~~~~-  278 (473)
                               +.++.|++||. |++++                                 .+..|++||+.+++...... 
T Consensus       174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~  253 (706)
T 2z3z_A          174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG  253 (706)
T ss_dssp             CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred             chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence                     47899999984 66665                                 34679999999887654332 


Q ss_pred             -ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC-----ceEEEEeCCCCCCC
Q 011978          279 -GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-----FTMFLWEPAVSKQP  352 (473)
Q Consensus       279 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~  352 (473)
                       .+...+..++++++.                                    ..++.++.+     ..+++||.......
T Consensus       254 ~~~~~~~~~~~~spdg------------------------------------~~l~~~~~~~~~~~~~v~~~d~~~g~~~  297 (706)
T 2z3z_A          254 EPKEKFLTNLSWSPDE------------------------------------NILYVAEVNRAQNECKVNAYDAETGRFV  297 (706)
T ss_dssp             SCTTCEEEEEEECTTS------------------------------------SEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred             CCCceeEeeEEEECCC------------------------------------CEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence             456678888888763                                    234554444     38999998765222


Q ss_pred             eeeec-Cccc---ceeEEEECC--CCcEEEEEECCCcEEEEeCC-CCceEEEeeCCccCEEE-EEEecCCCEEEEEeC-C
Q 011978          353 KTRMT-GHQQ---LVNHVYFSP--DGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQ-ISWSADSRLLLSGSK-D  423 (473)
Q Consensus       353 ~~~~~-~~~~---~v~~v~~sp--~g~~lasgs~d~~v~lwd~~-~~~~~~~~~~h~~~v~~-v~~sp~g~~l~s~s~-D  423 (473)
                      ..... .+..   .+.+++|+|  ||+++++++.|+.++||++. +++.+..+..|...+.+ ++|+|||+.|+.++. +
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~  377 (706)
T 2z3z_A          298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA  377 (706)
T ss_dssp             EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred             eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence            22221 1222   246789999  99999999999999999876 66777788888888887 899999998766554 4


Q ss_pred             C----cEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCC----CcEEecc
Q 011978          424 S----TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD----RVLKLWM  472 (473)
Q Consensus       424 g----~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D----~~i~~w~  472 (473)
                      +    .|+.||+.+++ ...+. |...+..++|||||++|+.+..+    +.+.+|+
T Consensus       378 ~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          378 SPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             CTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             CCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            4    67777777765 33443 56679999999999999876544    4588885

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=2.1e-23  Score=195.17  Aligned_cols=274  Identities=13%  Similarity=0.115  Sum_probs=205.3

Q ss_pred             cccEEEEEECCCCCeEEEEeC-------CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE-ecCCeEEEeeC
Q 011978          108 TEAVLSVAFSPDGRQLASGSG-------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDP  179 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~-~~dg~i~iwd~  179 (473)
                      ...+..++|+|+|+++++++.       ++.|.+||..+++....+.. ...+..++|+|+|++++.+ ..++.|.+||.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            456788999999999888773       56899999999887666543 2346789999999966554 55799999999


Q ss_pred             CCCccccccCCCcCC--------cEEEEEeceeccCCCCceEEEee--CCCcEEEEECCCCeEEEEecCccccEEEEEec
Q 011978          180 QTGKPSGNPLSGHKK--------WITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWG  249 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~--------~v~~i~~~~~~~~~~~~~~~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  249 (473)
                      .+++.......++..        .+.++.|+|     ++.++++++  .++.|.+||..+++.+..+..+...+.++.|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s  193 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-----ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD  193 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-----TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECC-----CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence            988754332221111        256777776     444555544  57899999999999888887566667888999


Q ss_pred             CCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978          250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (473)
Q Consensus       250 ~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
                      +++ .+++++.++.|.+||..+++....+...                                                
T Consensus       194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~------------------------------------------------  225 (353)
T 3vgz_A          194 SEGKRLYTTNADGELITIDTADNKILSRKKLL------------------------------------------------  225 (353)
T ss_dssp             TTTTEEEEECTTSEEEEEETTTTEEEEEEECC------------------------------------------------
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC------------------------------------------------
Confidence            887 5888888999999999887665433210                                                


Q ss_pred             CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-CcEEEEeCCCCceEEEeeCCccCEEE
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-~~v~lwd~~~~~~~~~~~~h~~~v~~  407 (473)
                                                 ..++...+..++|+|+|++++.++.+ +.|.+||..+++.+..+.....  ..
T Consensus       226 ---------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~  276 (353)
T 3vgz_A          226 ---------------------------DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LA  276 (353)
T ss_dssp             ---------------------------CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CC
T ss_pred             ---------------------------CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ce
Confidence                                       00122346789999999987777654 8999999999998887765442  57


Q ss_pred             EEEecCCCEEEEEe-CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978          408 ISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       408 v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                      ++|+|+|++++.++ .++.|.+||+.+++....+..+ ..+.+++|+|||++|+.+..+
T Consensus       277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence            99999999666555 6899999999998887777643 467899999999977666554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=1.8e-23  Score=193.84  Aligned_cols=275  Identities=11%  Similarity=0.094  Sum_probs=192.1

Q ss_pred             EECCCCCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec-CCeEEEeeCCCCccccccCCCc
Q 011978          115 AFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGH  192 (473)
Q Consensus       115 ~~sp~~~~-lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~  192 (473)
                      .|.+++.+ +++++.++.|++||..+++.......+...+ +++|+|||++|++++. ++.|.+||..+++.....+..+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            45566665 5677789999999999988777666666667 9999999997777665 8999999998887522233344


Q ss_pred             CCcEEEEEeceeccCCCCceEEEeeCCC---cEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEe-ecCCe-EEEE
Q 011978          193 KKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTG-SQDCT-IKVW  266 (473)
Q Consensus       193 ~~~v~~i~~~~~~~~~~~~~~~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~-~~d~~-i~~w  266 (473)
                      .....++.|+|     ++.+++++..++   .|.+||+.+++.+..+..+ ....+++|+++|. ++++ ..++. +.+|
T Consensus        83 ~~~~~~~~~s~-----dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~  156 (331)
T 3u4y_A           83 QSSMADVDITP-----DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRF  156 (331)
T ss_dssp             SSCCCCEEECT-----TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred             CCCccceEECC-----CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEE
Confidence            44444366665     556677554443   8999999999888776554 3468999999983 5544 55578 9999


Q ss_pred             ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  346 (473)
                      ++.....+.....                                                              .    
T Consensus       157 ~~~~~g~~~~~~~--------------------------------------------------------------~----  170 (331)
T 3u4y_A          157 KIDADGVLFDTGQ--------------------------------------------------------------E----  170 (331)
T ss_dssp             EECTTCCEEEEEE--------------------------------------------------------------E----
T ss_pred             EECCCCcEeecCC--------------------------------------------------------------c----
Confidence            9764322111000                                                              0    


Q ss_pred             CCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCce---EEEeeCCccCEEEEEEecCCCEEEEEe-
Q 011978          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF---VAVFRGHVGPVYQISWSADSRLLLSGS-  421 (473)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~---~~~~~~h~~~v~~v~~sp~g~~l~s~s-  421 (473)
                              .. .....+..++|+|+|++++.++ .++.|++||+.+++.   +..+..+ ..+..++|+|||++|+.++ 
T Consensus       171 --------~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          171 --------FI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             --------EE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred             --------cc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence                    00 0112357899999999665554 688999999999988   7777654 5678899999999776654 


Q ss_pred             CCCcEEEEECCCCce--eeccccc----CC---CEEEEEEeeCCCEEEEEe-CCCcEEecc
Q 011978          422 KDSTLKVWDIRTQKL--KQDLPGH----AD---EVFAVDWSPDGEKVASGG-KDRVLKLWM  472 (473)
Q Consensus       422 ~Dg~i~iwd~~~~~~--~~~~~~h----~~---~i~~l~~s~d~~~l~s~~-~D~~i~~w~  472 (473)
                      .++.|.+||+.+++.  ...+..+    ..   ....++|+|||++|+.++ .++.|.+|+
T Consensus       241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence            578899999998776  2222211    11   235689999999886555 456999996

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=5.1e-24  Score=219.67  Aligned_cols=303  Identities=11%  Similarity=0.083  Sum_probs=200.1

Q ss_pred             CCCEEEEEECCCCCeEEEEec-CC-----eEEEeeCCCCccccccCCCcC------------------------CcEEEE
Q 011978          150 KNWVLCIAWSADGKHLVSGSK-AG-----ELQCWDPQTGKPSGNPLSGHK------------------------KWITGI  199 (473)
Q Consensus       150 ~~~v~~l~~s~dg~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~~------------------------~~v~~i  199 (473)
                      ...+.+++|||||++|++++. |+     .|++||+.+++.... +..+.                        ..+..+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE-ECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc-cchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            456899999999999999998 88     899999998864322 22221                        124556


Q ss_pred             EeceeccCCCCceEEEeeCCCcEEEEECCCCe--EEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeee
Q 011978          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL  277 (473)
Q Consensus       200 ~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  277 (473)
                      .|+|     ++.++++++. +.|++||+.++.  ....+..|...+.+++|+|||..+....++.|++||+.+++.....
T Consensus       115 ~~Sp-----Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          115 QWSP-----DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             EECT-----TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred             EECC-----CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence            6665     6678888776 999999998873  3445667888899999999996443344679999999988765544


Q ss_pred             eccCce----------------EEEEEeccccee-eeccccCCCcccCCHHHHHHHHHhhhhcccCCC--CceEE---Ee
Q 011978          278 KGHGHW----------------VNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA--PERLV---SG  335 (473)
Q Consensus       278 ~~~~~~----------------v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~---~~  335 (473)
                      ..+...                +..+.++|+... .....+........           ........  ...+.   .+
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~-----------~~~~~p~~~~~~~~~~~~~g  257 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQK-----------RYEVYADRTDVIEQRYPAAG  257 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEE-----------EEEECSSCEEEEEEECCBTT
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEe-----------cCCCCCCcccceEeecCCCC
Confidence            333221                244556655331 11111111000000           00000000  00000   00


Q ss_pred             cC--CceEEEEeCCC-CCCCeeeec-CcccceeEEEECCCCcEEEEEEC-----CCcEEEEeCCCCceEEEeeCCcc---
Q 011978          336 SD--DFTMFLWEPAV-SKQPKTRMT-GHQQLVNHVYFSPDGQWVASASF-----DKSIKLWNGTTGKFVAVFRGHVG---  403 (473)
Q Consensus       336 ~~--d~~i~iwd~~~-~~~~~~~~~-~~~~~v~~v~~sp~g~~lasgs~-----d~~v~lwd~~~~~~~~~~~~h~~---  403 (473)
                      ..  ...+++||+.. ......... .|...+..++| |||++|++++.     +..|++||..+++....+..+..   
T Consensus       258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  336 (741)
T 2ecf_A          258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV  336 (741)
T ss_dssp             SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred             CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence            01  11678888765 432221111 46778999999 99999998764     56799999999988777766543   


Q ss_pred             -CEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeecccccCCCEEEE-EEeeCCCEEEE-EeCCC--cEEecc
Q 011978          404 -PVYQISWSADSRLLLSGSKDSTLKVWDIR-TQKLKQDLPGHADEVFAV-DWSPDGEKVAS-GGKDR--VLKLWM  472 (473)
Q Consensus       404 -~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~h~~~i~~l-~~s~d~~~l~s-~~~D~--~i~~w~  472 (473)
                       .+.+++|+|||+++++++.||.++||.+. .++ ...+..|...|..+ .|+|||+.|+. ++.|+  .++||.
T Consensus       337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence             45689999999999999999988888765 344 67777888888887 59999998754 45555  888885

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=5.1e-24  Score=213.31  Aligned_cols=261  Identities=11%  Similarity=-0.005  Sum_probs=185.7

Q ss_pred             cccEEEEEECCCCCeEEEEeC-CCeEEEEeCCCCceeEEEcCCC-CCEEEEEECCCCCeEEEEec---CCeEEEeeCCC-
Q 011978          108 TEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSK---AGELQCWDPQT-  181 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~-d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~s~~~---dg~i~iwd~~~-  181 (473)
                      ..+|.+++|+|||++||+++. ||+++||++.++.. ..+..|. ..+.+++|+|| +.+++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999999886 99999999976654 4455555 68999999999 77777665   45555654432 


Q ss_pred             --CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee
Q 011978          182 --GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS  258 (473)
Q Consensus       182 --~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~  258 (473)
                        +... .....+.  +....|+|..   + ..+++.+.++.+.+||+.+++.......+.   .++.|+|||. +++++
T Consensus        99 ~~g~~~-~l~~~~~--~~~~~~s~dg---~-~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~  168 (582)
T 3o4h_A           99 RPGEEQ-RLEAVKP--MRILSGVDTG---E-AVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             STTCCE-ECTTSCS--BEEEEEEECS---S-CEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEE
T ss_pred             CCCccc-cccCCCC--ceeeeeCCCC---C-eEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEE
Confidence              2221 1122211  2244555521   1 233344444555699999887655443332   6788888884 55566


Q ss_pred             cC----CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          259 QD----CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       259 ~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      .|    +.|++||+.+++..                                                            
T Consensus       169 ~~~~~~~~i~~~d~~~g~~~------------------------------------------------------------  188 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSGGLR------------------------------------------------------------  188 (582)
T ss_dssp             EEETTEEEEEEEETTTCCCE------------------------------------------------------------
T ss_pred             EcCCCCeEEEEEcCCCCCce------------------------------------------------------------
Confidence            55    66777776655421                                                            


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC--cEEEEeCCCCceEEEeeCCccCEEEEE---
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIS---  409 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~--~v~lwd~~~~~~~~~~~~h~~~v~~v~---  409 (473)
                                          .+..|...+..++|||||++|+++..++  .|++||..+++.. .+.+|...+..++   
T Consensus       189 --------------------~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~  247 (582)
T 3o4h_A          189 --------------------VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA  247 (582)
T ss_dssp             --------------------EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred             --------------------EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence                                1223445578899999999999888888  8999999999887 7777877676677   


Q ss_pred             -----EecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCc
Q 011978          410 -----WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV  467 (473)
Q Consensus       410 -----~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~  467 (473)
                           |+|||.++++++.|+++++|++  ++....   +...+.+++|+ |++.+++++.+.+
T Consensus       248 ~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          248 ITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             EEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             ccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCCCC
Confidence                 9999999999999999999999  655442   33568899999 9999999888754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=7e-23  Score=190.64  Aligned_cols=292  Identities=12%  Similarity=0.140  Sum_probs=190.7

Q ss_pred             EEEEeCCCeEEEEeCCC-Cc-eeEEEcCCCCCEEEEEECCCCCeEEEEecC-CeEEEeeCC--CCcccc-ccCCCcCCcE
Q 011978          123 LASGSGDTTVRLWDLNT-QT-PMFKCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCWDPQ--TGKPSG-NPLSGHKKWI  196 (473)
Q Consensus       123 lat~s~d~~i~iwd~~~-~~-~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d-g~i~iwd~~--~~~~~~-~~~~~~~~~v  196 (473)
                      +++++.|+.|++||+.. +. .......+...+.+++|+|+|++|++++.+ +.|.+|++.  +++... ..+..+. .+
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~   86 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SL   86 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CC
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CC
Confidence            34447799999999853 32 222223466778999999999999988887 999999987  544221 1122222 56


Q ss_pred             EEEEeceeccCCCCceEEEee-CCCcEEEEEC---CCCeEEEEecCccccEEEEEecCCC-eEEEee-cCCeEEEEECCC
Q 011978          197 TGISWEPVHLNAPCRRFVSAS-KDGDARIWDV---SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVWETTQ  270 (473)
Q Consensus       197 ~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~---~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~-~d~~i~~wd~~~  270 (473)
                      ..+.|+|     ++.++++++ .++.|.+||+   ...+.+..+..+ ..+.+++|++++ .+++++ .++.|++||+.+
T Consensus        87 ~~~~~s~-----dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A           87 THISTDH-----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             SEEEECT-----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cEEEEcC-----CCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence            6777766     445565554 5889999999   444445555444 357889999988 466666 899999999987


Q ss_pred             -Cceee----eeec-cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978          271 -GKLIR----ELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (473)
Q Consensus       271 -~~~~~----~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  344 (473)
                       ++...    .+.. .+..+..++++++.                                   ...++++..++.+.+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg-----------------------------------~~l~~~~~~~~~i~~~  205 (343)
T 1ri6_A          161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNE-----------------------------------QYAYCVNELNSSVDVW  205 (343)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTS-----------------------------------SEEEEEETTTTEEEEE
T ss_pred             CCceeeecccccccCCCCCcceEEECCCC-----------------------------------CEEEEEeCCCCEEEEE
Confidence             54432    1222 23345555555542                                   1134556688999999


Q ss_pred             eCCCCCCCe---eeec----C--cccceeEEEECCCCcEEEEE-ECCCcEEEEeCC--CC--ceEEEeeCCccCEEEEEE
Q 011978          345 EPAVSKQPK---TRMT----G--HQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGT--TG--KFVAVFRGHVGPVYQISW  410 (473)
Q Consensus       345 d~~~~~~~~---~~~~----~--~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~--~~--~~~~~~~~h~~~v~~v~~  410 (473)
                      +........   ....    +  ....+..++|+|+|++|+.+ ..++.|++||+.  ++  +.+..+..+.. +.+++|
T Consensus       206 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~  284 (343)
T 1ri6_A          206 ELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNV  284 (343)
T ss_dssp             ESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEE
T ss_pred             EecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEE
Confidence            985322111   1111    1  12356689999999988754 478999999998  33  44555555544 889999


Q ss_pred             ecCCCEEEEEe-CCCcEEEEEC--CCCce--eecccccCCCEEEEEEeeCCCE
Q 011978          411 SADSRLLLSGS-KDSTLKVWDI--RTQKL--KQDLPGHADEVFAVDWSPDGEK  458 (473)
Q Consensus       411 sp~g~~l~s~s-~Dg~i~iwd~--~~~~~--~~~~~~h~~~i~~l~~s~d~~~  458 (473)
                      +|+|++|++++ .|+.|.+|++  .+++.  +..+... ....+++|.|+.+.
T Consensus       285 s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          285 DHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEGG  336 (343)
T ss_dssp             CTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC--
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccCC
Confidence            99999888887 6899999955  45533  3344332 34567888877553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=5.5e-23  Score=210.73  Aligned_cols=281  Identities=12%  Similarity=0.106  Sum_probs=198.1

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC-----Cc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-----GK  183 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~-----~~  183 (473)
                      ..|.+++|||| +.++.+. ++.|++||+.+++.. .+..+...+.+++|||||++|+++ .++.|++||+.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            56999999999 6666553 599999999887654 344566778899999999999985 689999999988     66


Q ss_pred             cccccCCCcCCc--------------EEEEEeceeccCCCCceEEEee--------------------------------
Q 011978          184 PSGNPLSGHKKW--------------ITGISWEPVHLNAPCRRFVSAS--------------------------------  217 (473)
Q Consensus       184 ~~~~~~~~~~~~--------------v~~i~~~~~~~~~~~~~~~s~s--------------------------------  217 (473)
                      .... ...+...              +.++.|+|     ++.++++++                                
T Consensus       158 ~~~~-~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-----Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          158 AIAV-TIDGTETLVYGQAVHQREFGIEKGTFWSP-----KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             CEES-CSCCBTTEEESSCCGGGCTTCCCSEEECT-----TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             cEEe-ccCCCCCeEcccchhhhhcCCCceEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence            4432 2222222              36677776     667888877                                


Q ss_pred             -CCCcEEEEECCCCeEEEEec--CccccEEEEEecCCCe-EEEeecCC-----eEEEEECCCCceeeeeec--cCce---
Q 011978          218 -KDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGV-IYTGSQDC-----TIKVWETTQGKLIRELKG--HGHW---  283 (473)
Q Consensus       218 -~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~-l~s~~~d~-----~i~~wd~~~~~~~~~~~~--~~~~---  283 (473)
                       .+..|.+||+.+++......  .|...+.+++|++||. |++++.++     .|++||..+++....+..  +..+   
T Consensus       232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence             44679999999988655442  4667899999999985 77777665     899999998843333321  1111   


Q ss_pred             EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccce
Q 011978          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV  363 (473)
Q Consensus       284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  363 (473)
                      +..+.+++.                                  .....+++++.|+.+.+|+..........+..+...+
T Consensus       312 ~~~~~~sp~----------------------------------~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v  357 (706)
T 2z3z_A          312 LHPLTFLPG----------------------------------SNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV  357 (706)
T ss_dssp             CSCCEECTT----------------------------------CSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE
T ss_pred             cCCceeecC----------------------------------CCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE
Confidence            112223220                                  0123577788888888887653334445556666667


Q ss_pred             eE-EEECCCCcEEEEEECC-C----cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC----CcEEEEECCC
Q 011978          364 NH-VYFSPDGQWVASASFD-K----SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD----STLKVWDIRT  433 (473)
Q Consensus       364 ~~-v~~sp~g~~lasgs~d-~----~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D----g~i~iwd~~~  433 (473)
                      .. ++|+|+|+.|+.++.+ +    .|..||..+++. ..+. |...+.+++|||||++|+..+.+    +.|++||+.+
T Consensus       358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence            66 7999999988766554 3    677778777663 3333 66779999999999988876443    4699999988


Q ss_pred             Cc
Q 011978          434 QK  435 (473)
Q Consensus       434 ~~  435 (473)
                      ++
T Consensus       436 ~~  437 (706)
T 2z3z_A          436 GS  437 (706)
T ss_dssp             CE
T ss_pred             Ce
Confidence            76

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.1e-22  Score=188.90  Aligned_cols=285  Identities=11%  Similarity=0.089  Sum_probs=195.3

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCC-C-CEEEEEECCCCCeEE-EEecCCeEEEeeCCCCccccccCCCc----C
Q 011978          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHK-N-WVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGH----K  193 (473)
Q Consensus       121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~-~-~v~~l~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~----~  193 (473)
                      +++++++.++.|++||+.+++.+..+.... . .+.+++|+|||++++ ++..++.|.+||+.+++.......++    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            468899999999999999988776655322 2 478899999998765 45567899999998887543222222    1


Q ss_pred             CcEEEEEeceeccCCCCceEEEee------------CCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecC
Q 011978          194 KWITGISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD  260 (473)
Q Consensus       194 ~~v~~i~~~~~~~~~~~~~~~s~s------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d  260 (473)
                      ..+..+.|+|     ++.++++++            .++.|.+||+.+++.+..+.. ...+.+++|++++. ++++  +
T Consensus        82 ~~~~~~~~s~-----dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~  153 (337)
T 1pby_B           82 KSLFGAALSP-----DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--G  153 (337)
T ss_dssp             ECTTCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--S
T ss_pred             ccccceEECC-----CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--C
Confidence            1344555554     555677665            579999999999887776654 34567788999885 6666  6


Q ss_pred             CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce----EEEec
Q 011978          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER----LVSGS  336 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~  336 (473)
                      +.|++||+.+++....+..+... ..+.++++....          +..                ......    .....
T Consensus       154 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l----------~~~----------------~~~~~~~~~~~~~~~  206 (337)
T 1pby_B          154 RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV----------WNQ----------------HESSGVMATPFYTAR  206 (337)
T ss_dssp             SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC----------CCC----------------CTTTTEEEEEEEEEB
T ss_pred             CeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE----------eee----------------ccCCCceeeeeeccc
Confidence            89999999998877655432200 001122221100          000                000000    01111


Q ss_pred             CC----------ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE
Q 011978          337 DD----------FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (473)
Q Consensus       337 ~d----------~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~  406 (473)
                      .+          ..+.+||....+........+...+.+++|+|+|++++++  ++.|++||..+++.+..+..+ ..+.
T Consensus       207 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~  283 (337)
T 1pby_B          207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYY  283 (337)
T ss_dssp             TTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCC
T ss_pred             cccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-Ccee
Confidence            11          1678999876543323334455678889999999999988  689999999999888777644 4578


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc
Q 011978          407 QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH  443 (473)
Q Consensus       407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h  443 (473)
                      +++|+|||++|++++.|+.|++||+.+++.+..+..+
T Consensus       284 ~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             eEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            9999999999999999999999999998877766543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=1.4e-22  Score=208.03  Aligned_cols=311  Identities=13%  Similarity=0.085  Sum_probs=210.5

Q ss_pred             EEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC---CEEEEEECCCCCeEEEEec---------CCeEEEeeCC
Q 011978          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSK---------AGELQCWDPQ  180 (473)
Q Consensus       113 ~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~---~v~~l~~s~dg~~l~s~~~---------dg~i~iwd~~  180 (473)
                      +++|+|||+++++ +.|++|++||+.++++...+..|..   .+.+++|||||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            5799999965554 4699999999999887665554433   4889999999999998876         7899999999


Q ss_pred             CCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-cCccccE---------------
Q 011978          181 TGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAV---------------  243 (473)
Q Consensus       181 ~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v---------------  243 (473)
                      +++... ..+   ...+..+.|+|     ++.+++.+. ++.|++||+.+++..... .++...|               
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SP-----DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~  169 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSP-----VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA  169 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECS-----STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred             CCccccceec---CcccccceECC-----CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence            887521 112   23567788877     566787775 789999999888765432 2333322               


Q ss_pred             --EEEEecCCC-eEEEeecCC----------------------------------eEEEEECCCCcee--------eeee
Q 011978          244 --TCVKWGGDG-VIYTGSQDC----------------------------------TIKVWETTQGKLI--------RELK  278 (473)
Q Consensus       244 --~~~~~~~~~-~l~s~~~d~----------------------------------~i~~wd~~~~~~~--------~~~~  278 (473)
                        .++.|+||| .|+.++.|.                                  .|++||+.+++..        ..+.
T Consensus       170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~  249 (719)
T 1z68_A          170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA  249 (719)
T ss_dssp             SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred             CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence              479999998 466666542                                  7889999887643        1233


Q ss_pred             ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec--C--CceEEEEe----CCCCC
Q 011978          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--D--DFTMFLWE----PAVSK  350 (473)
Q Consensus       279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~--d~~i~iwd----~~~~~  350 (473)
                      .+...+..++++|+..                                    .+++..  .  ...|.+||    .....
T Consensus       250 ~~~~~~~~~~~SpD~~------------------------------------~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          250 SSDYYFSWLTWVTDER------------------------------------VCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             TSCEEEEEEEESSSSE------------------------------------EEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             CCcceEEEeEEeCCCe------------------------------------EEEEEeccccCeEEEEEEcccCCCCCCc
Confidence            5677788888887632                                    223321  1  23578888    54433


Q ss_pred             CCeeee---cCccccee-----EEEECCCCcEEEE--EECCC--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEE
Q 011978          351 QPKTRM---TGHQQLVN-----HVYFSPDGQWVAS--ASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL  418 (473)
Q Consensus       351 ~~~~~~---~~~~~~v~-----~v~~sp~g~~las--gs~d~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~  418 (473)
                      ......   .+|...+.     .++|+|||+.|+.  ...++  .|.+||..+++ ...+..+...+..+.++ +++.|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~  371 (719)
T 1z68_A          294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLF  371 (719)
T ss_dssp             CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEE
T ss_pred             eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEE
Confidence            222111   35666666     8899999996654  44555  57777887766 44555566678888888 888777


Q ss_pred             EEeCC-----CcEEEEECCC--Cc-eeec----ccccCCCEEEEEEeeCCCEEEEE-eCC--CcEEec
Q 011978          419 SGSKD-----STLKVWDIRT--QK-LKQD----LPGHADEVFAVDWSPDGEKVASG-GKD--RVLKLW  471 (473)
Q Consensus       419 s~s~D-----g~i~iwd~~~--~~-~~~~----~~~h~~~i~~l~~s~d~~~l~s~-~~D--~~i~~w  471 (473)
                      ..+.+     +..++|.+..  +. ....    +.+|...+..+.|+||+++++.. +.+  ..+.+|
T Consensus       372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~  439 (719)
T 1z68_A          372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLH  439 (719)
T ss_dssp             EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEE
T ss_pred             EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEE
Confidence            76655     7888998753  32 1222    33366678899999999988743 333  244454

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=5.7e-22  Score=180.20  Aligned_cols=234  Identities=20%  Similarity=0.220  Sum_probs=170.5

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-CceeEEEcCC-CCCEEEEEECCCCCeEEEEec--CCe--EEE
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGH-KNWVLCIAWSADGKHLVSGSK--AGE--LQC  176 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-~~~~~~~~~~-~~~v~~l~~s~dg~~l~s~~~--dg~--i~i  176 (473)
                      .+.+|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|||++|++++.  ++.  |..
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence            4456888999999999999999986 78999999998 7665555455 367889999999999999983  344  555


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEE-EeeCCCcEEEEECCC-CeEEEEecCccccEEEEEecCCCe-
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-SASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV-  253 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~-s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-  253 (473)
                      |+..++...  .+..+. .+..+.|+|     ++..++ +++.++.+++|++.. ......+..|...+.++.|++++. 
T Consensus       115 ~~~~~~~~~--~~~~~~-~~~~~~~sp-----dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  186 (297)
T 2ojh_A          115 LPSTGGTPR--LMTKNL-PSYWHGWSP-----DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRW  186 (297)
T ss_dssp             EETTCCCCE--ECCSSS-SEEEEEECT-----TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSE
T ss_pred             EECCCCceE--EeecCC-CccceEECC-----CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCE
Confidence            555555422  233333 377788876     445565 788899999998632 233455667788899999999884 


Q ss_pred             EEEe-ecCCeEEEEECC-CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978          254 IYTG-SQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (473)
Q Consensus       254 l~s~-~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (473)
                      ++.+ ..++.+++|++. .+....                                                        
T Consensus       187 l~~~~~~~~~~~i~~~~~~~~~~~--------------------------------------------------------  210 (297)
T 2ojh_A          187 IYFNSSRTGQMQIWRVRVDGSSVE--------------------------------------------------------  210 (297)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCEE--------------------------------------------------------
T ss_pred             EEEEecCCCCccEEEECCCCCCcE--------------------------------------------------------
Confidence            5544 468888888764 221111                                                        


Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-----------CcEEEEeCCCCceE--EEe
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-----------KSIKLWNGTTGKFV--AVF  398 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-----------~~v~lwd~~~~~~~--~~~  398 (473)
                                             .+..|...+.+++|+|+|++|++++.+           +.|++||+.+++..  ..+
T Consensus       211 -----------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  267 (297)
T 2ojh_A          211 -----------------------RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL  267 (297)
T ss_dssp             -----------------------ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred             -----------------------EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence                                   112233457789999999999988876           56999999988653  444


Q ss_pred             eCCccCEEEEEEecCCCEEEEEeCCC
Q 011978          399 RGHVGPVYQISWSADSRLLLSGSKDS  424 (473)
Q Consensus       399 ~~h~~~v~~v~~sp~g~~l~s~s~Dg  424 (473)
                      .+|...+.+++|+|+|++|++++.|.
T Consensus       268 ~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          268 FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCCcccccceECCCCCEEEEEEecc
Confidence            57888999999999999998887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=1.1e-22  Score=209.14  Aligned_cols=303  Identities=12%  Similarity=0.095  Sum_probs=195.3

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCC---cEEEEEeceeccCCCCceEEEeeCC---------
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK---WITGISWEPVHLNAPCRRFVSASKD---------  219 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~~~~~~s~s~d---------  219 (473)
                      .+.+++|+|||+++++ +.||+|++||..+++... .+..|..   .+..+.|+|     +++++++++.+         
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~-~~~~~~~~~~~v~~~~~Sp-----Dg~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV-LIEGKKIESLRAIRYEISP-----DREYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE-EECTTTTTTTTCSEEEECT-----TSSEEEEEESCCCCSSSCCC
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE-EeccccccccccceEEECC-----CCCEEEEEecCccceeecce
Confidence            3677899999997766 789999999999886543 3444443   378888877     66788888764         


Q ss_pred             CcEEEEECCCCeEEE--EecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCce-------------
Q 011978          220 GDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHW-------------  283 (473)
Q Consensus       220 g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-------------  283 (473)
                      +.+.+||+.+++...  ...+|...+.+++|+|||. |+.++ ++.|++||+.+++..+....+...             
T Consensus        91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            778899999887622  2234445588899999994 55555 489999999988776555443322             


Q ss_pred             -----EEEEEecccce-eeeccccCCCc-ccCCHHHHHHHHHhhhhcccCCCCceEEE---e--cCCceEEEEeCCCCCC
Q 011978          284 -----VNSLALSTEYA-LRTGAFDHTGK-QYSSPEEMKKAALERYNKIKGNAPERLVS---G--SDDFTMFLWEPAVSKQ  351 (473)
Q Consensus       284 -----v~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~--~~d~~i~iwd~~~~~~  351 (473)
                           +..++++|+.. +.....+.... .+...         ............+.-   |  ..+..+++||......
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~  240 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP---------TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH  240 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC---------CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEee---------ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce
Confidence                 26788888754 32332222110 00000         000000000000000   0  1234899999876543


Q ss_pred             CeeeecC------cccceeEEEECCCCcEEEEEECC----CcEEEEeCCCCceEEEeeC-CccCEE----EEEEecCCCE
Q 011978          352 PKTRMTG------HQQLVNHVYFSPDGQWVASASFD----KSIKLWNGTTGKFVAVFRG-HVGPVY----QISWSADSRL  416 (473)
Q Consensus       352 ~~~~~~~------~~~~v~~v~~sp~g~~lasgs~d----~~v~lwd~~~~~~~~~~~~-h~~~v~----~v~~sp~g~~  416 (473)
                      . ..+..      +...+..++|||||++|++.+..    ..|++||+.++++...+.. +.+.+.    .++|||||+.
T Consensus       241 ~-~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~  319 (723)
T 1xfd_A          241 D-LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK  319 (723)
T ss_dssp             C-EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred             e-EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe
Confidence            2 22332      35678999999999999877543    5799999999987766654 334443    7899999997


Q ss_pred             EEE--EeCCC------cEEEEE-CCCCce--eecccccCCCEEE-EEEeeCCCEEEEEeCC---CcEEecc
Q 011978          417 LLS--GSKDS------TLKVWD-IRTQKL--KQDLPGHADEVFA-VDWSPDGEKVASGGKD---RVLKLWM  472 (473)
Q Consensus       417 l~s--~s~Dg------~i~iwd-~~~~~~--~~~~~~h~~~i~~-l~~s~d~~~l~s~~~D---~~i~~w~  472 (473)
                      |+.  +..|+      .|++|| ...++.  ...+..+...+.. ++|||||+.|+..+.+   +.++||.
T Consensus       320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence            775  44677      577788 344441  4455544444554 6999999999876655   7888885

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=1.4e-21  Score=181.83  Aligned_cols=265  Identities=12%  Similarity=0.187  Sum_probs=173.2

Q ss_pred             eEE-EEecCCeEEEeeCCC-CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC-CcEEEEECC--CCe--EEEEe
Q 011978          164 HLV-SGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-GDARIWDVS--LRK--CVICL  236 (473)
Q Consensus       164 ~l~-s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-g~i~iwd~~--~~~--~~~~~  236 (473)
                      +++ +++.++.|++|++.. +.........+...+..+.|+|     ++.++++++.+ +.+.+|++.  +++  .+..+
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-----DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   80 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-----TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC-----CCCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence            444 447799999999853 3221111233555677777776     45667777766 999999997  444  33444


Q ss_pred             cCccccEEEEEecCCCe-EEEee-cCCeEEEEECC---CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978          237 SGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETT---QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (473)
Q Consensus       237 ~~h~~~v~~~~~~~~~~-l~s~~-~d~~i~~wd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (473)
                      ..+. .+.+++|++++. +++++ .++.|.+||+.   .++....+..+. .+..++++++                   
T Consensus        81 ~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~d-------------------  139 (343)
T 1ri6_A           81 ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPD-------------------  139 (343)
T ss_dssp             ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTT-------------------
T ss_pred             ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCC-------------------
Confidence            4443 778899999884 55554 58899999984   333333332222 2333333332                   


Q ss_pred             HHHHHHHhhhhcccCCCCceEEEec-CCceEEEEeCCCCCCCee----ee-cCcccceeEEEECCCCcEEEEEE-CCCcE
Q 011978          312 EMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKT----RM-TGHQQLVNHVYFSPDGQWVASAS-FDKSI  384 (473)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~----~~-~~~~~~v~~v~~sp~g~~lasgs-~d~~v  384 (473)
                                       ...+++++ .++.+.+||+........    .. ......+..++|+|+|+++++++ .++.|
T Consensus       140 -----------------g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i  202 (343)
T 1ri6_A          140 -----------------NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV  202 (343)
T ss_dssp             -----------------SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             -----------------CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence                             22344444 889999999865222211    11 22234678899999999776555 78999


Q ss_pred             EEEeCCC--Cce--EEEee----CC--ccCEEEEEEecCCCEEEE-EeCCCcEEEEECC--C--CceeecccccCCCEEE
Q 011978          385 KLWNGTT--GKF--VAVFR----GH--VGPVYQISWSADSRLLLS-GSKDSTLKVWDIR--T--QKLKQDLPGHADEVFA  449 (473)
Q Consensus       385 ~lwd~~~--~~~--~~~~~----~h--~~~v~~v~~sp~g~~l~s-~s~Dg~i~iwd~~--~--~~~~~~~~~h~~~i~~  449 (473)
                      ++||+..  ++.  ...+.    ++  ...+.+++|+|+|++|+. ++.|+.|++||+.  +  .+....+..+.. +.+
T Consensus       203 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~  281 (343)
T 1ri6_A          203 DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRG  281 (343)
T ss_dssp             EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCC
T ss_pred             EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cce
Confidence            9999953  433  22222    11  235778999999988774 4579999999998  3  234444544444 889


Q ss_pred             EEEeeCCCEEEEEe-CCCcEEecc
Q 011978          450 VDWSPDGEKVASGG-KDRVLKLWM  472 (473)
Q Consensus       450 l~~s~d~~~l~s~~-~D~~i~~w~  472 (473)
                      ++|+|||++|++++ .|+.+.+|.
T Consensus       282 ~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          282 FNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             EEECTTSSEEEEECTTTCEEEEEE
T ss_pred             EEECCCCCEEEEecCCCCeEEEEE
Confidence            99999999888887 689999993

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=1.3e-21  Score=182.49  Aligned_cols=283  Identities=12%  Similarity=0.056  Sum_probs=189.5

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCC-CCEEEEEECCCCCeEE-EEecCCeEEEeeCCCCccccccCCC
Q 011978          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSG  191 (473)
Q Consensus       114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~  191 (473)
                      +++++++.++++++.+++|++||+.+++.+..+..+. ..+..++|+|||++++ ++..++.|.+||+.+++........
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence            5678888999999999999999999988776665433 2578899999998765 4556899999999988754322222


Q ss_pred             c-----CCcEEEEEeceeccCCCCceEEEeeCC------------CcEEEEECCCCe---EEEEecCccccEEEEEecCC
Q 011978          192 H-----KKWITGISWEPVHLNAPCRRFVSASKD------------GDARIWDVSLRK---CVICLSGHTLAVTCVKWGGD  251 (473)
Q Consensus       192 ~-----~~~v~~i~~~~~~~~~~~~~~~s~s~d------------g~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~  251 (473)
                      +     ...+.++.|+|     ++.++++++.+            +.|.+||+.+++   .+..+.. ...+.+++|+++
T Consensus        85 ~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~d  158 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISP-----DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADD  158 (349)
T ss_dssp             CSTTEEEECSSCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTT
T ss_pred             cccccccccccceEECC-----CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCC
Confidence            2     12244555554     56678777755            899999998743   2233333 335788899999


Q ss_pred             CeEEEeecCCeEEEEECCCCceeeeeeccCc------------------------eEEEEEecccceeeeccccCCCccc
Q 011978          252 GVIYTGSQDCTIKVWETTQGKLIRELKGHGH------------------------WVNSLALSTEYALRTGAFDHTGKQY  307 (473)
Q Consensus       252 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~~~~~~~~~~~~  307 (473)
                      +.++.++.  .|++||..+++.+..+..+..                        ....+++.++....           
T Consensus       159 g~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----------  225 (349)
T 1jmx_B          159 GSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD-----------  225 (349)
T ss_dssp             SCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----------------
T ss_pred             CcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC-----------
Confidence            87666544  499999999887765543210                        00011111000000           


Q ss_pred             CCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEE
Q 011978          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKL  386 (473)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~l  386 (473)
                                ..    ........+.....++.+.+|+..          .+...+..++|+| +|++++++  ++.|.+
T Consensus       226 ----------~~----~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~  279 (349)
T 1jmx_B          226 ----------PA----TADLLYGYLSVDLKTGKTHTQEFA----------DLTELYFTGLRSPKDPNQIYGV--LNRLAK  279 (349)
T ss_dssp             -----------C----CCEEEEEEEEEETTTCCEEEEEEE----------ECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred             ----------cc----ccccceeEEEEeccCCcEEecccc----------cCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence                      00    000000011122334445555431          2345678899999 99999988  889999


Q ss_pred             EeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc
Q 011978          387 WNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG  442 (473)
Q Consensus       387 wd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  442 (473)
                      ||+.+++.+..+... ..+.+++|+|+|++|++++.++.|++||+.+++.+..++.
T Consensus       280 ~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          280 YDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             EETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence            999999988777643 3467899999999988888899999999999887766543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=2.5e-20  Score=173.94  Aligned_cols=262  Identities=18%  Similarity=0.180  Sum_probs=172.0

Q ss_pred             CCCeEEEEeCC--CCceeE-EEcCCCCCEEEEEECCCCCeEEEEec---CCeEEEeeCCCCcccc-ccCCCcCCcEEEEE
Q 011978          128 GDTTVRLWDLN--TQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSG-NPLSGHKKWITGIS  200 (473)
Q Consensus       128 ~d~~i~iwd~~--~~~~~~-~~~~~~~~v~~l~~s~dg~~l~s~~~---dg~i~iwd~~~~~~~~-~~~~~~~~~v~~i~  200 (473)
                      .++.|.+|++.  +++... ....+......++|+|||+ |++++.   ++.|++|++.+++... .....+...+..++
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            35677777764  443322 2233445677899999999 666554   6899999997665321 11233455566677


Q ss_pred             eceeccCCCCceEEEee-CCCcEEEEECCC-C--eEEEEecC---------ccccEEEEEecCCCeEE-EeecCCeEEEE
Q 011978          201 WEPVHLNAPCRRFVSAS-KDGDARIWDVSL-R--KCVICLSG---------HTLAVTCVKWGGDGVIY-TGSQDCTIKVW  266 (473)
Q Consensus       201 ~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~-~--~~~~~~~~---------h~~~v~~~~~~~~~~l~-s~~~d~~i~~w  266 (473)
                      |+|     ++.++++++ .++.+.+||+.. +  ..+..+..         +...+.+++|++++.++ +...++.|++|
T Consensus        93 ~sp-----dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~  167 (347)
T 3hfq_A           93 VDE-----ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVY  167 (347)
T ss_dssp             EET-----TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             ECC-----CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEE
Confidence            766     556677766 789999999962 2  22332221         12347889999988644 44567889999


Q ss_pred             ECC-CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978          267 ETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (473)
Q Consensus       267 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  345 (473)
                      ++. +++.....        .+.                                                         
T Consensus       168 ~~~~~g~~~~~~--------~~~---------------------------------------------------------  182 (347)
T 3hfq_A          168 NVSDAGQLSEQS--------VLT---------------------------------------------------------  182 (347)
T ss_dssp             EECTTSCEEEEE--------EEE---------------------------------------------------------
T ss_pred             EECCCCcEEEee--------eEE---------------------------------------------------------
Confidence            987 33321100        000                                                         


Q ss_pred             CCCCCCCeeeecCcccceeEEEECCCCcEEEE-EECCCcEEEEeCCC--Cce--EEEeeCCc------cCEEEEEEecCC
Q 011978          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTT--GKF--VAVFRGHV------GPVYQISWSADS  414 (473)
Q Consensus       346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las-gs~d~~v~lwd~~~--~~~--~~~~~~h~------~~v~~v~~sp~g  414 (473)
                                 ......+..++|+|||++|++ +..++.|++|++..  ++.  +..+....      ..+..++|+|||
T Consensus       183 -----------~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG  251 (347)
T 3hfq_A          183 -----------MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG  251 (347)
T ss_dssp             -----------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred             -----------cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence                       000113567899999996666 45678999999874  543  22333222      348899999999


Q ss_pred             CEE-EEEeCCCcEEEEECCC---CceeecccccCCCEEEEEEeeCCCEEEEEeCC-CcEEec
Q 011978          415 RLL-LSGSKDSTLKVWDIRT---QKLKQDLPGHADEVFAVDWSPDGEKVASGGKD-RVLKLW  471 (473)
Q Consensus       415 ~~l-~s~s~Dg~i~iwd~~~---~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~~w  471 (473)
                      ++| ++...++.|.+|++..   .+....+..+...+..++|+|||++|++++.+ +.+.+|
T Consensus       252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            987 5556789999999973   24455566666678899999999999888765 899998

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=2.4e-20  Score=172.77  Aligned_cols=244  Identities=14%  Similarity=0.139  Sum_probs=170.5

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeC-CCeEEEEeCCCCce-eEEEcCCCCCEEEEEECCCCCeEEEEecCC---eEEEeeC
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTP-MFKCTGHKNWVLCIAWSADGKHLVSGSKAG---ELQCWDP  179 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~-d~~i~iwd~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg---~i~iwd~  179 (473)
                      ..+...+ .++|+|+|+++++++. ++.|.+||+.+++. ......+..+..+++|+|||++|+++..++   .|.+||+
T Consensus        37 ~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           37 TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred             EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence            3345556 9999999997776665 89999999998876 556666666666699999999999655553   8999999


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCc-eEEEeeCCCc-EEEEECCCCeEE----EEecCccccEEEEEecCCCe
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGD-ARIWDVSLRKCV----ICLSGHTLAVTCVKWGGDGV  253 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~-~~~s~s~dg~-i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~  253 (473)
                      .+++.... +. +.....++.|+|     +++ .+++...++. +.+|++.....+    ...........+++|++++.
T Consensus       116 ~~~~~~~~-~~-~~~~~~~~~~sp-----dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~  188 (331)
T 3u4y_A          116 LKNKFIST-IP-IPYDAVGIAISP-----NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGN  188 (331)
T ss_dssp             TTTEEEEE-EE-CCTTEEEEEECT-----TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSS
T ss_pred             CCCCeEEE-EE-CCCCccceEECC-----CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCC
Confidence            98875443 22 233457788877     444 4455566688 999998753322    11113344578899999984


Q ss_pred             -EE-EeecCCeEEEEECCCCce---eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978          254 -IY-TGSQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (473)
Q Consensus       254 -l~-s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
                       ++ ++..++.|++||+.+++.   +..+.                                                  
T Consensus       189 ~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--------------------------------------------------  218 (331)
T 3u4y_A          189 FAFVANLIGNSIGILETQNPENITLLNAVG--------------------------------------------------  218 (331)
T ss_dssp             EEEEEETTTTEEEEEECSSTTSCEEEEEEE--------------------------------------------------
T ss_pred             EEEEEeCCCCeEEEEECCCCcccceeeecc--------------------------------------------------
Confidence             44 455789999999887765   22111                                                  


Q ss_pred             CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCce--EEEeeCC----
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAVFRGH----  401 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~--~~~~~~h----  401 (473)
                                                    ....+..++|+|||++|+.++ .++.|.+||..+++.  +..+..+    
T Consensus       219 ------------------------------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  268 (331)
T 3u4y_A          219 ------------------------------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID  268 (331)
T ss_dssp             ------------------------------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC
T ss_pred             ------------------------------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC
Confidence                                          012345689999999776665 477899999999876  4433322    


Q ss_pred             c---cCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCce
Q 011978          402 V---GPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKL  436 (473)
Q Consensus       402 ~---~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~  436 (473)
                      .   .....++|+|||++|++++. ++.|.+||+.....
T Consensus       269 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          269 PRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            1   12356899999998866654 66999999987543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=4.7e-21  Score=183.64  Aligned_cols=240  Identities=14%  Similarity=0.089  Sum_probs=164.8

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC----------ceeE-----EEcCCCCCEEEEEECCCCCeEE----E
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----------TPMF-----KCTGHKNWVLCIAWSADGKHLV----S  167 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~----------~~~~-----~~~~~~~~v~~l~~s~dg~~l~----s  167 (473)
                      +...++.+++++++.++++++.|+ +++|+....          ....     ....+...|.+++|+|+|++|+    +
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            345688999999999999999888 899874210          0111     1123566799999999999999    7


Q ss_pred             EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 011978          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (473)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  247 (473)
                      |+.|+.|++||+.++...      ....              .                 +.-..+..+.+|...|.+++
T Consensus       114 gs~d~~v~iwd~~~~~~~------~~~~--------------~-----------------~~~~~~~~~~~h~~~V~~v~  156 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNE------AKQQ--------------K-----------------RPFAYHKLLKDAGGMVIDMK  156 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCT------TCSS--------------C-----------------CCSEEEECCCSGGGSEEEEE
T ss_pred             cCCCceEEEEEccccccC------CcCC--------------c-----------------ceeeeeeccCCCCCceEEEE
Confidence            888999999997643100      0000              0                 00011223457889999999


Q ss_pred             ecCC-C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978          248 WGGD-G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (473)
Q Consensus       248 ~~~~-~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
                      |+++ + .+++++.||+|++||++++..+..                                                 
T Consensus       157 ~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~-------------------------------------------------  187 (434)
T 2oit_A          157 WNPTVPSMVAVCLADGSIAVLQVTETVKVCA-------------------------------------------------  187 (434)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEEESSSEEEEE-------------------------------------------------
T ss_pred             ECCCCCCEEEEEECCCeEEEEEcCCCcceee-------------------------------------------------
Confidence            9986 4 688999999999999887532211                                                 


Q ss_pred             CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC----
Q 011978          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH----  401 (473)
Q Consensus       326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h----  401 (473)
                                                    ..+|...|.+++|+|+|++|++|+.||.|++||.+ ++....+..|    
T Consensus       188 ------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~  236 (434)
T 2oit_A          188 ------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE  236 (434)
T ss_dssp             ------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC
T ss_pred             ------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC
Confidence                                          11355678999999999999999999999999998 6655555443    


Q ss_pred             ---ccCEEEEEEecCCCEEEEE-eCCCc------EEEEECCCCce-----eecc-------cccCCCEEEEEEeeCCCEE
Q 011978          402 ---VGPVYQISWSADSRLLLSG-SKDST------LKVWDIRTQKL-----KQDL-------PGHADEVFAVDWSPDGEKV  459 (473)
Q Consensus       402 ---~~~v~~v~~sp~g~~l~s~-s~Dg~------i~iwd~~~~~~-----~~~~-------~~h~~~i~~l~~s~d~~~l  459 (473)
                         ...|.+++|++++.++++. +.||.      +++|++...+.     ...+       .+....-+.+.+-+|.+++
T Consensus       237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~  316 (434)
T 2oit_A          237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLV  316 (434)
T ss_dssp             TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEE
T ss_pred             CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEE
Confidence               3389999999998887653 34543      89999976421     1111       1222233344555777777


Q ss_pred             EEEeC
Q 011978          460 ASGGK  464 (473)
Q Consensus       460 ~s~~~  464 (473)
                      +.++.
T Consensus       317 ~v~s~  321 (434)
T 2oit_A          317 LAASA  321 (434)
T ss_dssp             EEEET
T ss_pred             EEecC
Confidence            66554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=1.4e-20  Score=174.57  Aligned_cols=261  Identities=12%  Similarity=0.079  Sum_probs=183.8

Q ss_pred             CeEEEEecCCeEEEeeCCCCccccccCCCcCC-cEEEEEeceeccCCCCce-EEEeeCCCcEEEEECCCCeEEEEecC-c
Q 011978          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK-WITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVICLSG-H  239 (473)
Q Consensus       163 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~~~-~~s~s~dg~i~iwd~~~~~~~~~~~~-h  239 (473)
                      ++|++++.++.|.+||..+++.......++.. .+..+.|+|     ++.+ +++++.++.|.+||+.+++.+..+.. +
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~   76 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-----GGRIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-----TSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC-----CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC
Confidence            47889999999999999988765433323322 356677766     4434 56667789999999999887765542 2


Q ss_pred             ----cccEEEEEecCCC-eEEEee------------cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978          240 ----TLAVTCVKWGGDG-VIYTGS------------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       240 ----~~~v~~~~~~~~~-~l~s~~------------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                          ...+.+++|++++ .++++.            .++.|.+||..+++.+..+.. ...+..++++++          
T Consensus        77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~d----------  145 (337)
T 1pby_B           77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD----------  145 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT----------
T ss_pred             cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCC----------
Confidence                2256678999988 566664            579999999998887766543 223344444443          


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~  382 (473)
                                                ...++.+  ++.+.+||....... ..+..+. ....++|+|+|++++..+.++
T Consensus       146 --------------------------g~~l~~~--~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~s~dg~~l~~~~~~~  195 (337)
T 1pby_B          146 --------------------------GSKLYGL--GRDLHVMDPEAGTLV-EDKPIQS-WEAETYAQPDVLAVWNQHESS  195 (337)
T ss_dssp             --------------------------SSCEEEE--SSSEEEEETTTTEEE-EEECSTT-TTTTTBCCCBCCCCCCCCTTT
T ss_pred             --------------------------CCEEEEe--CCeEEEEECCCCcEe-eeeeccc-cCCCceeCCCccEEeeeccCC
Confidence                                      1234554  678999998654322 2222211 011237899988776554332


Q ss_pred             ------------------------cEEEEeCCCCceE-EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978          383 ------------------------SIKLWNGTTGKFV-AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK  437 (473)
Q Consensus       383 ------------------------~v~lwd~~~~~~~-~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~  437 (473)
                                              .|.+||..+++.. ..+..+...+.+++|+|||++|+++  ++.|++||+.+++..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~  273 (337)
T 1pby_B          196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI  273 (337)
T ss_dssp             TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE
T ss_pred             CceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCc
Confidence                                    4689999998764 2344566678899999999999888  789999999998877


Q ss_pred             ecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       438 ~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ..+..+ ..+.+++|+|||++|++++.|+.|++|+
T Consensus       274 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          274 KRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             ceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            666543 4578999999999999999999999996

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.87  E-value=3.3e-20  Score=175.82  Aligned_cols=293  Identities=13%  Similarity=0.125  Sum_probs=193.6

Q ss_pred             EEeCCCCceeEEEcCCCCCEEE-----EEECCCCCeEEEEec-CC--eEEEeeCCCCccccccCCCcCCcEEEEEeceec
Q 011978          134 LWDLNTQTPMFKCTGHKNWVLC-----IAWSADGKHLVSGSK-AG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH  205 (473)
Q Consensus       134 iwd~~~~~~~~~~~~~~~~v~~-----l~~s~dg~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  205 (473)
                      .+|..++.....+..|......     .+|||||++|+.++. ++  .|.+||+.+++... ...++...+....|+|  
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~sp--   90 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-LTEGRGDNTFGGFLSP--   90 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-CCCSSCBCSSSCEECT--
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-eeeCCCCCccceEEcC--
Confidence            3466777777777777766666     889999999998887 66  48888998876543 3344444333445655  


Q ss_pred             cCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEe--cCCCeEEE-----------------------eecC
Q 011978          206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYT-----------------------GSQD  260 (473)
Q Consensus       206 ~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~l~s-----------------------~~~d  260 (473)
                         ++.+++.++.++.+.+||+.+++.......+...+....|  ++++.++.                       ...+
T Consensus        91 ---dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (388)
T 3pe7_A           91 ---DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC  167 (388)
T ss_dssp             ---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred             ---CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence               6778999999999999999998876666555555544443  77775443                       2245


Q ss_pred             CeEEEEECCCCceeeeeeccCceEEEEEecc-cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC--
Q 011978          261 CTIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--  337 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--  337 (473)
                      ..|.+||+.+++.. .+..+...+..+.++| +..                                    .++..+.  
T Consensus       168 ~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~------------------------------------~l~~~~~~~  210 (388)
T 3pe7_A          168 CRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDS------------------------------------TVAFCHEGP  210 (388)
T ss_dssp             EEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEE------------------------------------EEEEEECSC
T ss_pred             ceEEEEECCCCceE-EeecCCccccccEECCCCCC------------------------------------EEEEEEecC
Confidence            78999999988654 4444555677788877 532                                    2222222  


Q ss_pred             ----CceEEEEeCCCCCCCeeeecCcc--cceeEEEECCCCcEEEEEECC-C----cEEEEeCCCCceE--EEeeCCccC
Q 011978          338 ----DFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFD-K----SIKLWNGTTGKFV--AVFRGHVGP  404 (473)
Q Consensus       338 ----d~~i~iwd~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~lasgs~d-~----~v~lwd~~~~~~~--~~~~~h~~~  404 (473)
                          ...+.++|.....  ...+..+.  ..+..++|+|||+.|+..+.+ +    .|++||+.+++..  ..+.++...
T Consensus       211 ~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~  288 (388)
T 3pe7_A          211 HDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHL  288 (388)
T ss_dssp             TTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEE
T ss_pred             CCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceee
Confidence                3367777754332  22233333  357788999999988765542 2    3999999988743  333331111


Q ss_pred             ---EEEEEEecCCCEEEEE---------eCCCcEEEEECCCCceeecccccCC-----------CEEEEEEeeCCCEEEE
Q 011978          405 ---VYQISWSADSRLLLSG---------SKDSTLKVWDIRTQKLKQDLPGHAD-----------EVFAVDWSPDGEKVAS  461 (473)
Q Consensus       405 ---v~~v~~sp~g~~l~s~---------s~Dg~i~iwd~~~~~~~~~~~~h~~-----------~i~~l~~s~d~~~l~s  461 (473)
                         ...++|+|||+.|+..         ..+..|++||+.+++. ..+..|..           .+..++|+|||++|+.
T Consensus       289 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~  367 (388)
T 3pe7_A          289 MSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF  367 (388)
T ss_dssp             EECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             eecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence               1123799999988754         4466899999988765 34444444           4778899999998886


Q ss_pred             Ee-CCCcEEecc
Q 011978          462 GG-KDRVLKLWM  472 (473)
Q Consensus       462 ~~-~D~~i~~w~  472 (473)
                      ++ .++...||.
T Consensus       368 ~s~~~g~~~l~~  379 (388)
T 3pe7_A          368 TSDVHGKPALYL  379 (388)
T ss_dssp             EECTTSSCEEEE
T ss_pred             EecCCCceeEEE
Confidence            65 577777774

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=4.3e-21  Score=192.08  Aligned_cols=231  Identities=14%  Similarity=0.150  Sum_probs=166.4

Q ss_pred             CCCEEEEEECCCCCeEEEEec-CCeEEEeeCCCCccccccCCCcC-CcEEEEEeceeccCCCCceEEEeeC---CCcEEE
Q 011978          150 KNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASK---DGDARI  224 (473)
Q Consensus       150 ~~~v~~l~~s~dg~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~~s~s~---dg~i~i  224 (473)
                      ..+|.+++|+|||+.|++++. ||++++|++.+++.. . +..|. ..+..+.|+|     + ..+++++.   +...++
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~-lt~~~~~~~~~~~~sp-----d-~~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-K-LNREPINSVLDPHYGV-----G-RVILVRDVSKGAEQHAL   92 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-E-CCSSCCSEECEECTTC-----S-EEEEEEECSTTSCCEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-e-eecccccccccccCCC-----C-eEEEEeccCCCCcceEE
Confidence            457999999999999999887 999999998666543 2 33444 5788888876     3 35555554   455666


Q ss_pred             EECCC---CeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978          225 WDVSL---RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (473)
Q Consensus       225 wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (473)
                      |.+..   +........+...+.++++++++.+++++.++.+.+||+.+++......                       
T Consensus        93 ~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-----------------------  149 (582)
T 3o4h_A           93 FKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-----------------------  149 (582)
T ss_dssp             EEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-----------------------
T ss_pred             EEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-----------------------
Confidence            65432   2222222222222334444444455555555556699887664321100                       


Q ss_pred             CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC
Q 011978          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (473)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d  381 (473)
                                                                               +..  .+++|||||++||+++.|
T Consensus       150 ---------------------------------------------------------~~~--~~~~~spDG~~la~~~~~  170 (582)
T 3o4h_A          150 ---------------------------------------------------------LPG--FGFVSDIRGDLIAGLGFF  170 (582)
T ss_dssp             ---------------------------------------------------------ESS--CEEEEEEETTEEEEEEEE
T ss_pred             ---------------------------------------------------------CCC--ceEEECCCCCEEEEEEEc
Confidence                                                                     011  568899999999988877


Q ss_pred             ----CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC--cEEEEECCCCceeecccccCCCEEEEE----
Q 011978          382 ----KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS--TLKVWDIRTQKLKQDLPGHADEVFAVD----  451 (473)
Q Consensus       382 ----~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~----  451 (473)
                          +.|++||+.+++.. .+..|.+.+..++|||||++|++++.|+  .|++||+.+++.. .+.+|...+..+.    
T Consensus       171 ~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          171 GGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             ETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred             CCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence                78999999988765 5677888999999999999999888898  8999999988877 7777776666666    


Q ss_pred             ----EeeCCCEEEEEeCCCcEEecc
Q 011978          452 ----WSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       452 ----~s~d~~~l~s~~~D~~i~~w~  472 (473)
                          |||||+.+++++.|+++++|.
T Consensus       249 ~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             cceeEcCCCcEEEEEEcCCcEEEEE
Confidence                999999999999999999996

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=1.1e-19  Score=169.52  Aligned_cols=254  Identities=13%  Similarity=0.153  Sum_probs=169.6

Q ss_pred             CcccEEEEEECCCCCeEEEEeC---CCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCC
Q 011978          107 HTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQ  180 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~---d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~  180 (473)
                      +...+..++|+|||+ |++++.   ++.|++||+.++.  .+.....+...+..++|+|||++|++++ .++.+.+|++.
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            445677899999999 555543   6899999997665  3333345667788999999999998888 67999999985


Q ss_pred             C-Cccc--ccc-CCC-------cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC-CCeEEE--EecC-ccccEEE
Q 011978          181 T-GKPS--GNP-LSG-------HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVI--CLSG-HTLAVTC  245 (473)
Q Consensus       181 ~-~~~~--~~~-~~~-------~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~-~~~~~~--~~~~-h~~~v~~  245 (473)
                      . +...  ... ..+       +...+.++.|+|     ++..+++...++.|.+||+. .++...  .+.. .......
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-----dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-----DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-----TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECC-----CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            3 3211  110 111       123467787776     44566667778899999998 454322  1222 2235778


Q ss_pred             EEecCCCe-EEE-eecCCeEEEEECCC--CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978          246 VKWGGDGV-IYT-GSQDCTIKVWETTQ--GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (473)
Q Consensus       246 ~~~~~~~~-l~s-~~~d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
                      ++|+++|. ++. +..++.+++|++..  ++... .       ..+...+                              
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-~-------~~~~~~~------------------------------  233 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ-L-------GIVKTIP------------------------------  233 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE-E-------EEEESSC------------------------------
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE-e-------eeeeecC------------------------------
Confidence            99999984 544 56788999998763  32210 0       0000000                              


Q ss_pred             hcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE-EEEECCCcEEEEeCCC---CceEEE
Q 011978          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTT---GKFVAV  397 (473)
Q Consensus       322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l-asgs~d~~v~lwd~~~---~~~~~~  397 (473)
                                                ..       ......+..++|+|||++| ++...++.|.+||+..   .+.+..
T Consensus       234 --------------------------~~-------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~  280 (347)
T 3hfq_A          234 --------------------------AD-------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ  280 (347)
T ss_dssp             --------------------------TT-------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred             --------------------------CC-------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence                                      00       0011347789999999987 4556689999999872   245556


Q ss_pred             eeCCccCEEEEEEecCCCEEEEEeCC-CcEEEEE--CCCCcee
Q 011978          398 FRGHVGPVYQISWSADSRLLLSGSKD-STLKVWD--IRTQKLK  437 (473)
Q Consensus       398 ~~~h~~~v~~v~~sp~g~~l~s~s~D-g~i~iwd--~~~~~~~  437 (473)
                      +..+...+..++|+|||++|++++.+ +.|.+|+  ..+++..
T Consensus       281 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          281 ISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            66666678899999999998888764 8999994  4555543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=1.7e-18  Score=162.45  Aligned_cols=265  Identities=12%  Similarity=0.106  Sum_probs=175.3

Q ss_pred             CcccEEEEEECCCCCeEEEEeCC----CeEEEEeCCC--Cc--eeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEe
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGD----TTVRLWDLNT--QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCW  177 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d----~~i~iwd~~~--~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iw  177 (473)
                      |...+..++|+|||++|++++.+    +.|.+|++..  +.  .+.....+......+++  ++++|++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            55667789999999999999876    7999998865  33  22333445556777888  888888776 57899999


Q ss_pred             eCCCCccccccC-------------CCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeE-----------
Q 011978          178 DPQTGKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKC-----------  232 (473)
Q Consensus       178 d~~~~~~~~~~~-------------~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~-----------  232 (473)
                      ++..........             ..+...+.++.|+|     +++++ ++...++.+.+|++.....           
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-----DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-----CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            987543221110             11122356677776     45545 4445588999998875331           


Q ss_pred             --EEEecCccccEEEEEecCCCe-EEEee-cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978          233 --VICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (473)
Q Consensus       233 --~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (473)
                        ......+......++|+++|. +++++ .++.|.+||+.+++....        ..+.                    
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~--------~~~~--------------------  252 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI--------QTVA--------------------  252 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE--------EEEE--------------------
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe--------EEEe--------------------
Confidence              112223445678899999984 65555 689999999876543110        0000                    


Q ss_pred             CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC--CcEEE
Q 011978          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD--KSIKL  386 (473)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d--~~v~l  386 (473)
                                                                    ....+......++|+|||++|+++..+  +.|.+
T Consensus       253 ----------------------------------------------~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v  286 (361)
T 3scy_A          253 ----------------------------------------------ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI  286 (361)
T ss_dssp             ----------------------------------------------SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred             ----------------------------------------------cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence                                                          000112235689999999998776654  89999


Q ss_pred             EeCC--CCc--eEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEE--CCCCceeecc-cccCCCEEEEEEe
Q 011978          387 WNGT--TGK--FVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWD--IRTQKLKQDL-PGHADEVFAVDWS  453 (473)
Q Consensus       387 wd~~--~~~--~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd--~~~~~~~~~~-~~h~~~i~~l~~s  453 (473)
                      |++.  +++  .+..+.. ...+.+++|+|||++|++++ .++.|.+|+  ..+++..... ..+...+.++.|.
T Consensus       287 ~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          287 FKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            9985  454  3444444 45678999999999988887 678999965  4566655433 2244578888886

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=6.6e-19  Score=180.99  Aligned_cols=310  Identities=12%  Similarity=0.077  Sum_probs=200.2

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC-----EEEEEECCCCCeEEEEecC---------CeEE
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---------GELQ  175 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~-----v~~l~~s~dg~~l~s~~~d---------g~i~  175 (473)
                      ...+++|+|||++++++  |++|++||+.++.+...+.+|...     ...++|||||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            34578999999999886  999999999999877667766533     2347899999999998876         5677


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecCccccE-----------
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAV-----------  243 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v-----------  243 (473)
                      +||+.+++..  .+..|...+....|+|     ++.+++.+ .++.|.+||+.++..... ..++...+           
T Consensus        96 ~~d~~~~~~~--~l~~~~~~~~~~~~SP-----dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           96 IYDLNKRQLI--TEERIPNNTQWVTWSP-----VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             EEETTTTEEC--CSSCCCTTEEEEEECS-----STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             EEECCCCcEE--EcccCCCcceeeEECC-----CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence            9999998754  3566777899999988     56677776 578999999988765442 22333322           


Q ss_pred             ------EEEEecCCCe-EEEeecC-C-----------------------------------eEEEEECCC---Cc--eee
Q 011978          244 ------TCVKWGGDGV-IYTGSQD-C-----------------------------------TIKVWETTQ---GK--LIR  275 (473)
Q Consensus       244 ------~~~~~~~~~~-l~s~~~d-~-----------------------------------~i~~wd~~~---~~--~~~  275 (473)
                            ..+.|+|||. |+.++.| +                                   +|++||+.+   ++  ...
T Consensus       168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~  247 (740)
T 4a5s_A          168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI  247 (740)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred             hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence                  2478999994 6555432 2                                   466777776   52  122


Q ss_pred             eee------ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978          276 ELK------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (473)
Q Consensus       276 ~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  349 (473)
                      .+.      ++...+..++++|+..+...                                .+.....+..|.+||...+
T Consensus       248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~--------------------------------~~~r~~~~~~i~~~d~~tg  295 (740)
T 4a5s_A          248 QITAPASMLIGDHYLCDVTWATQERISLQ--------------------------------WLRRIQNYSVMDICDYDES  295 (740)
T ss_dssp             EECCCHHHHTSCEEEEEEEEEETTEEEEE--------------------------------EEESSTTEEEEEEEEEETT
T ss_pred             EecCCccCCCCCeEEEEEEEeCCCeEEEE--------------------------------EeCCCCCEEEEEEEECCCC
Confidence            232      25556666766665321100                                0111234457899997665


Q ss_pred             C----CC-eeee--cCccccee-----EEEECCCCcEEE-EEEC-C--CcEEEEeCCCCceEEEeeCCccCEEEEEEecC
Q 011978          350 K----QP-KTRM--TGHQQLVN-----HVYFSPDGQWVA-SASF-D--KSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD  413 (473)
Q Consensus       350 ~----~~-~~~~--~~~~~~v~-----~v~~sp~g~~la-sgs~-d--~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~  413 (473)
                      .    .. ...+  .+|..++.     .++|+|||+.|+ ..+. +  ..|++||..+++......+ ...|..+. .+|
T Consensus       296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~-~~d  373 (740)
T 4a5s_A          296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIE-ALT  373 (740)
T ss_dssp             TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEE-EEC
T ss_pred             ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEEE-EEe
Confidence            4    11 1111  34555554     789999999887 6664 3  3688889887766554444 44565544 245


Q ss_pred             CCEEEEEeCC-----C--cEEEEECCCCceeeccc----ccCCCEEEEEEeeCCCEEEEEe
Q 011978          414 SRLLLSGSKD-----S--TLKVWDIRTQKLKQDLP----GHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       414 g~~l~s~s~D-----g--~i~iwd~~~~~~~~~~~----~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      ++.|+..+..     +  .|+..++..++....+.    +.......+.||||+++++...
T Consensus       374 ~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~  434 (740)
T 4a5s_A          374 SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRC  434 (740)
T ss_dssp             SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence            6655544432     3  35555555444332333    2335678899999999876544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=8.2e-19  Score=164.57  Aligned_cols=270  Identities=11%  Similarity=0.089  Sum_probs=169.5

Q ss_pred             CCeEEEEe----CCCeEEEEeCC--CCceeEEEcCCCCCEEEEEECCCCCeEEEEecC----CeEEEeeCCC--Cccccc
Q 011978          120 GRQLASGS----GDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDPQT--GKPSGN  187 (473)
Q Consensus       120 ~~~lat~s----~d~~i~iwd~~--~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d----g~i~iwd~~~--~~~~~~  187 (473)
                      ..+++.|+    .++.|.+|.+.  +++.......+......++|+|||++|++++.+    +.|.+|++..  ++..  
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~--   90 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH--   90 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE--
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE--
Confidence            34455554    46789999764  443322111156667889999999999998875    7888887653  2110  


Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEe-ecCCeEEEE
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG-SQDCTIKVW  266 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~-~~d~~i~~w  266 (473)
                                .                                  +.....+......+++ ....++++ ..++.+.+|
T Consensus        91 ----------~----------------------------------~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           91 ----------L----------------------------------LNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ----------E----------------------------------EEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEE
T ss_pred             ----------E----------------------------------eeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEE
Confidence                      0                                  0011112223444555 23344444 467899999


Q ss_pred             ECCCCceeeeee------c--------cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          267 ETTQGKLIRELK------G--------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       267 d~~~~~~~~~~~------~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                      ++.....+..+.      +        +...+..++++|+..                                   ..+
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~-----------------------------------~l~  170 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK-----------------------------------YLL  170 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS-----------------------------------EEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC-----------------------------------EEE
Confidence            986543322111      0        011223444444321                                   134


Q ss_pred             EEecCCceEEEEeCCCCCC------C------eeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCce--EEE
Q 011978          333 VSGSDDFTMFLWEPAVSKQ------P------KTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAV  397 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~------~------~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~--~~~  397 (473)
                      +++..++.+.+|++.....      .      ......+...+..++|+|||+++++++ .++.|.+||+.+++.  +..
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence            5556688999998765432      1      122233445678999999999888777 689999999987754  222


Q ss_pred             e---eCCccCEEEEEEecCCCEEEEEeCC--CcEEEEECC--CCc--eeecccccCCCEEEEEEeeCCCEEEEEe-CCCc
Q 011978          398 F---RGHVGPVYQISWSADSRLLLSGSKD--STLKVWDIR--TQK--LKQDLPGHADEVFAVDWSPDGEKVASGG-KDRV  467 (473)
Q Consensus       398 ~---~~h~~~v~~v~~sp~g~~l~s~s~D--g~i~iwd~~--~~~--~~~~~~~h~~~i~~l~~s~d~~~l~s~~-~D~~  467 (473)
                      +   ..+.....+++|+|||++|+++..+  +.|.+|++.  +++  .+..+.. ...+.+++|+|||++|++++ .++.
T Consensus       251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~  329 (361)
T 3scy_A          251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV  329 (361)
T ss_dssp             EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred             EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC
Confidence            2   2334557899999999998776654  899999995  344  3334443 45678999999999998887 6788


Q ss_pred             EEecc
Q 011978          468 LKLWM  472 (473)
Q Consensus       468 i~~w~  472 (473)
                      |.+|.
T Consensus       330 v~v~~  334 (361)
T 3scy_A          330 IQIFE  334 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99863

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=4.1e-19  Score=165.91  Aligned_cols=234  Identities=11%  Similarity=0.077  Sum_probs=174.0

Q ss_pred             CCEEEEEECCCCCeEEEEec-------CCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCc-eEEEeeCCCcE
Q 011978          151 NWVLCIAWSADGKHLVSGSK-------AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDA  222 (473)
Q Consensus       151 ~~v~~l~~s~dg~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~-~~~s~s~dg~i  222 (473)
                      ..+..++|+|+|++|++++.       ++.|.+||..+++.......  ...+.++.|+|     ++. .+++...++.|
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~-----dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINN-----TTQTLWFGNTVNSAV  113 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEET-----TTTEEEEEETTTTEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECC-----CCCEEEEEecCCCEE
Confidence            45789999999999988774       56899999998875433211  22344556655     444 45566668999


Q ss_pred             EEEECCCCeEEEEecCccc---------cEEEEEecCCC-eEEEee--cCCeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978          223 RIWDVSLRKCVICLSGHTL---------AVTCVKWGGDG-VIYTGS--QDCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (473)
Q Consensus       223 ~iwd~~~~~~~~~~~~h~~---------~v~~~~~~~~~-~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  290 (473)
                      .+||..+++.+..+..+..         .+.++.|++++ .++.++  .++.|.+||..+++.+..+..           
T Consensus       114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-----------  182 (353)
T 3vgz_A          114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-----------  182 (353)
T ss_dssp             EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-----------
T ss_pred             EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-----------
Confidence            9999999988777655432         26889999887 455544  578899999887765443221           


Q ss_pred             ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC
Q 011978          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp  370 (473)
                                                                                          +...+.+++|+|
T Consensus       183 --------------------------------------------------------------------~~~~~~~~~~s~  194 (353)
T 3vgz_A          183 --------------------------------------------------------------------TGKMSTGLALDS  194 (353)
T ss_dssp             --------------------------------------------------------------------CCTTCCCCEEET
T ss_pred             --------------------------------------------------------------------CCCccceEEECC
Confidence                                                                                011245678999


Q ss_pred             CCcEEEEEECCCcEEEEeCCCCceEEEeeC----CccCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeecccccCC
Q 011978          371 DGQWVASASFDKSIKLWNGTTGKFVAVFRG----HVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHAD  445 (473)
Q Consensus       371 ~g~~lasgs~d~~v~lwd~~~~~~~~~~~~----h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~h~~  445 (473)
                      +|++|++++.++.|.+||..+++.+..+..    +...+.+++|+|+|++|+.++. ++.|.+||+.+++....+.....
T Consensus       195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  274 (353)
T 3vgz_A          195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES  274 (353)
T ss_dssp             TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence            999999999999999999999998877654    5567889999999998777665 58999999999887766654332


Q ss_pred             CEEEEEEeeCCCEEEEEe-CCCcEEecc
Q 011978          446 EVFAVDWSPDGEKVASGG-KDRVLKLWM  472 (473)
Q Consensus       446 ~i~~l~~s~d~~~l~s~~-~D~~i~~w~  472 (473)
                        ..+.|+|||++++.++ .++.|.+|+
T Consensus       275 --~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          275 --LAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             --CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             --ceEEECCCCCEEEEEECCCCeEEEEE
Confidence              5789999999665554 789999986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.85  E-value=8.8e-19  Score=163.87  Aligned_cols=296  Identities=14%  Similarity=0.072  Sum_probs=194.3

Q ss_pred             CCCeEEEEe------CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEeeCCCC
Q 011978          119 DGRQLASGS------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG  182 (473)
Q Consensus       119 ~~~~lat~s------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd~~~~  182 (473)
                      ++++++...      .|+.|.+||..+++.+..+..+..+  .++|+|||++|+++.          .++.|.+||..++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            556665543      3789999999998877777665554  899999999999886          3678999999877


Q ss_pred             ccccccCCC-----cCCcEEEEEeceeccCCCCceEEEeeC--CCcEEEEECCCCeEEEE-ecCccccEEEEEecCCC--
Q 011978          183 KPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG--  252 (473)
Q Consensus       183 ~~~~~~~~~-----~~~~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~--  252 (473)
                      +........     +......+.++|     ++++++++..  +++|.+||+.+++.+.. +... . ...+.+.+++  
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~sp-----dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~  164 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTT-----DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPR  164 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECT-----TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSS
T ss_pred             cEEEEEEcCccccccCCCcceEEECC-----CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCe
Confidence            654322111     112223344443     6667777653  68999999999988776 4321 1 2224455554  


Q ss_pred             eEEEeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978          253 VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (473)
                      .+++.+.||.+.+|++.. ++......  ..    ..+.....          ..+.               ........
T Consensus       165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~--~~----~~~~~~~~----------~~~~---------------~~~~~g~~  213 (361)
T 2oiz_A          165 SFMTICGDGGLLTINLGEDGKVASQSR--SK----QMFSVKDD----------PIFI---------------APALDKDK  213 (361)
T ss_dssp             EEEEEETTSSEEEEEECTTSSEEEEEE--CC----CCSCTTTS----------CBCS---------------CCEECSSE
T ss_pred             eEEEECCCCcEEEEEECCCCcEeeecc--cc----ceEcCCCC----------ceEE---------------EecccCCE
Confidence            577889999999998765 44331110  00    00000000          0000               00001124


Q ss_pred             EEEecCCceEEEEeCCCCCCCeee-e--cC----c----ccceeEEEECCCCcEEEEEEC-----------CCcEEEEeC
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTR-M--TG----H----QQLVNHVYFSPDGQWVASASF-----------DKSIKLWNG  389 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~-~--~~----~----~~~v~~v~~sp~g~~lasgs~-----------d~~v~lwd~  389 (473)
                      ++..+.++.+.++|.......... .  ..    +    ......++|+|+++.++.+..           .+.|.+||.
T Consensus       214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~  293 (361)
T 2oiz_A          214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT  293 (361)
T ss_dssp             EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred             EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence            455567888999997543221110 0  00    0    111223789999887776543           347999999


Q ss_pred             CCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeecccccCCCEEEEEEeeCCC
Q 011978          390 TTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ--KLKQDLPGHADEVFAVDWSPDGE  457 (473)
Q Consensus       390 ~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~--~~~~~~~~h~~~i~~l~~s~d~~  457 (473)
                      .+++.+..+..+.  +.+++|+|||++|++++. ++|.+||..++  +.+.++..+...-..+.++|||+
T Consensus       294 ~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          294 KTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            9999999998876  899999999999998886 99999999999  88888766667788999999986

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=6.3e-20  Score=175.83  Aligned_cols=193  Identities=18%  Similarity=0.194  Sum_probs=141.6

Q ss_pred             cEEEEEecCCC-eEEEeecCCeEEEEECCCCce----------eee-----eeccCceEEEEEecccceeeeccccCCCc
Q 011978          242 AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL----------IRE-----LKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (473)
Q Consensus       242 ~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~----------~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (473)
                      .+..+++++++ .+++++.|+ +++|+......          +..     ...+...|.+++++++.            
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg------------  104 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN------------  104 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS------------
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC------------
Confidence            46677887754 677777777 89987532110          000     01123456777776542            


Q ss_pred             ccCCHHHHHHHHHhhhhcccCCCCceEE----EecCCceEEEEeCCCC-----CC--C---eeeecCcccceeEEEECCC
Q 011978          306 QYSSPEEMKKAALERYNKIKGNAPERLV----SGSDDFTMFLWEPAVS-----KQ--P---KTRMTGHQQLVNHVYFSPD  371 (473)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~d~~i~iwd~~~~-----~~--~---~~~~~~~~~~v~~v~~sp~  371 (473)
                                              ..++    +++.|+.+++||+...     ..  +   ...+.+|...|.+++|+|+
T Consensus       105 ------------------------~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  160 (434)
T 2oit_A          105 ------------------------LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT  160 (434)
T ss_dssp             ------------------------CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS
T ss_pred             ------------------------CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC
Confidence                                    3466    7899999999997543     11  1   2345678999999999998


Q ss_pred             -CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-------c
Q 011978          372 -GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-------H  443 (473)
Q Consensus       372 -g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------h  443 (473)
                       +.+||+++.||+|++||++++..+....+|...|.+++|+|+|++|++|+.||+|++||++ ++....+..       |
T Consensus       161 ~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~  239 (434)
T 2oit_A          161 VPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH  239 (434)
T ss_dssp             CTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred             CCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence             8999999999999999999987777777899999999999999999999999999999998 444433332       2


Q ss_pred             CCCEEEEEEeeCCCEEEEE-eCCCc------EEecc
Q 011978          444 ADEVFAVDWSPDGEKVASG-GKDRV------LKLWM  472 (473)
Q Consensus       444 ~~~i~~l~~s~d~~~l~s~-~~D~~------i~~w~  472 (473)
                      ...|.++.|++++.++++. +.||.      +++|.
T Consensus       240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~  275 (434)
T 2oit_A          240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL  275 (434)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred             ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence            3379999999998887543 34433      66774

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=1.6e-19  Score=185.31  Aligned_cols=282  Identities=12%  Similarity=0.113  Sum_probs=188.2

Q ss_pred             cEEEEEECCCCCeEEEEeC---------CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          110 AVLSVAFSPDGRQLASGSG---------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      .|.+++|||||++||+++.         |+.|++||+.+++.+.. ......+.+++|||||+.|+.+. ++.|++|++.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~  138 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP  138 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence            4889999999999998876         78999999998865210 11135688999999999999885 7899999998


Q ss_pred             CCccccccCCCcCCcE-----------------EEEEeceeccCCCCceEEEeeCCC-----------------------
Q 011978          181 TGKPSGNPLSGHKKWI-----------------TGISWEPVHLNAPCRRFVSASKDG-----------------------  220 (473)
Q Consensus       181 ~~~~~~~~~~~~~~~v-----------------~~i~~~~~~~~~~~~~~~s~s~dg-----------------------  220 (473)
                      +++.......++...+                 .++.|+|     ++.++++++.|.                       
T Consensus       139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-----DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-----NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-----TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            8775433333443333                 3677776     667888877552                       


Q ss_pred             -----------cEEEEECCCCeEE---E-----EecCccccEEEEEecCCCeEE-EeecC----CeEEEEE----CCCCc
Q 011978          221 -----------DARIWDVSLRKCV---I-----CLSGHTLAVTCVKWGGDGVIY-TGSQD----CTIKVWE----TTQGK  272 (473)
Q Consensus       221 -----------~i~iwd~~~~~~~---~-----~~~~h~~~v~~~~~~~~~~l~-s~~~d----~~i~~wd----~~~~~  272 (473)
                                 .|++||+.+++..   .     .+.+|...+.+++|++|+.++ +....    ..|.+||    ..+++
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence                       7889999887642   1     134688889999999998644 43222    2488899    77776


Q ss_pred             eeeee----eccCceEE-----EEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce-EEEecCCc--e
Q 011978          273 LIREL----KGHGHWVN-----SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDF--T  340 (473)
Q Consensus       273 ~~~~~----~~~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~--~  340 (473)
                      ....+    ..+..++.     .+.++++..                                   .. ++++..++  .
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-----------------------------------~l~~~~~~~~g~~~  338 (719)
T 1z68_A          294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAI-----------------------------------SYYKIFSDKDGYKH  338 (719)
T ss_dssp             CCGGGEEEEECSSSCSSSSSCCCCEECTTSS-----------------------------------CEEEEEECTTSCEE
T ss_pred             eEEEEecccccCCceEccccCCccEECCCCC-----------------------------------eEEEEEEccCCceE
Confidence            65544    34444443     344443311                                   11 22343444  5


Q ss_pred             EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-----CcEEEEeCCC--Cc-eEEEee----CCccCEEEE
Q 011978          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTT--GK-FVAVFR----GHVGPVYQI  408 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-----~~v~lwd~~~--~~-~~~~~~----~h~~~v~~v  408 (473)
                      +.+|+.....  ...+..+...+..+.++ +++.|+..+.+     +..++|.+..  +. ....+.    +|...+..+
T Consensus       339 l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~  415 (719)
T 1z68_A          339 IHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTA  415 (719)
T ss_dssp             EEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEE
T ss_pred             EEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEE
Confidence            6677765433  33444555567777777 88877777665     7888987653  42 123333    266778899


Q ss_pred             EEecCCCEEEE-EeCC--CcEEEEECCCCce
Q 011978          409 SWSADSRLLLS-GSKD--STLKVWDIRTQKL  436 (473)
Q Consensus       409 ~~sp~g~~l~s-~s~D--g~i~iwd~~~~~~  436 (473)
                      .|+||+++++. ++.+  ..+++||+.+++.
T Consensus       416 ~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~  446 (719)
T 1z68_A          416 SFSDYAKYYALVCYGPGIPISTLHDGRTDQE  446 (719)
T ss_dssp             EECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred             EECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence            99999987774 4433  4688999877654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=2.4e-18  Score=161.54  Aligned_cols=268  Identities=10%  Similarity=0.102  Sum_probs=169.9

Q ss_pred             EEEEeCC--CeEEEEeC--CCCceeE--EEc-CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC-CCcccccc-CCCcC
Q 011978          123 LASGSGD--TTVRLWDL--NTQTPMF--KCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGKPSGNP-LSGHK  193 (473)
Q Consensus       123 lat~s~d--~~i~iwd~--~~~~~~~--~~~-~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~-~~~~~~~~-~~~~~  193 (473)
                      ++.|+..  +.|.+|++  .+++...  ... .....+..++|+|||++|++++.+ .|.+|++. +++..... ...+ 
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-   82 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-   82 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-
Confidence            4555542  46777665  3443221  111 233457789999999999998888 99999986 66532110 0000 


Q ss_pred             CcEEEEEeceeccCCCCce--EEEee-------------CCCcEEEEECC-CCeEEEEec----CccccEEEEEecCCCe
Q 011978          194 KWITGISWEPVHLNAPCRR--FVSAS-------------KDGDARIWDVS-LRKCVICLS----GHTLAVTCVKWGGDGV  253 (473)
Q Consensus       194 ~~v~~i~~~~~~~~~~~~~--~~s~s-------------~dg~i~iwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~~  253 (473)
                      .....+     .+++++++  ++++.             .++++.+|++. .++....+.    .+...+.+++|+++|.
T Consensus        83 g~~~~~-----~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~  157 (365)
T 1jof_A           83 GHPRAN-----DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             SSGGGG-----CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             CCCccE-----EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence            111112     23445553  33443             68999999997 455443332    2456788999999984


Q ss_pred             -EEEee-cCCeEEEEECC-CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978          254 -IYTGS-QDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (473)
Q Consensus       254 -l~s~~-~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (473)
                       ++++. .++.|++||+. +++....        ..+                                           
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~~~~~--------~~~-------------------------------------------  186 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGEVELV--------GSV-------------------------------------------  186 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEE--------EEE-------------------------------------------
T ss_pred             EEEEEcCCCCEEEEEEECCCCCEEEe--------eeE-------------------------------------------
Confidence             66554 46799999987 5543210        000                                           


Q ss_pred             eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCC--CCceEE---Eee-----
Q 011978          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGT--TGKFVA---VFR-----  399 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~--~~~~~~---~~~-----  399 (473)
                                              ....|...+..++|+|||++|++++. ++.|.+|+..  +++...   .+.     
T Consensus       187 ------------------------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  242 (365)
T 1jof_A          187 ------------------------DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG  242 (365)
T ss_dssp             ------------------------ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred             ------------------------ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence                                    00011234678999999999988775 6899999765  565421   221     


Q ss_pred             --CCcc------CEEEEE-EecCCCEEEEEeCC-C-----cEEEEECC-CCceee---cccccCCCEEEEEEee---CCC
Q 011978          400 --GHVG------PVYQIS-WSADSRLLLSGSKD-S-----TLKVWDIR-TQKLKQ---DLPGHADEVFAVDWSP---DGE  457 (473)
Q Consensus       400 --~h~~------~v~~v~-~sp~g~~l~s~s~D-g-----~i~iwd~~-~~~~~~---~~~~h~~~i~~l~~s~---d~~  457 (473)
                        +|..      .+..++ |+|||++|++++.+ +     +|.+|++. +++...   ....+......++|+|   ||+
T Consensus       243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~  322 (365)
T 1jof_A          243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE  322 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred             cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence              2222      588999 99999998876543 2     89999996 555432   2333444456789999   899


Q ss_pred             EEEEEeCC-CcEEecc
Q 011978          458 KVASGGKD-RVLKLWM  472 (473)
Q Consensus       458 ~l~s~~~D-~~i~~w~  472 (473)
                      +|++++.+ +.|++|.
T Consensus       323 ~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          323 WMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEEEECSSSCEEEEEE
T ss_pred             EEEEEEcCCCeEEEEE
Confidence            99999875 8999985

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=4e-19  Score=165.61  Aligned_cols=268  Identities=14%  Similarity=0.103  Sum_probs=165.2

Q ss_pred             EEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCce-EEEeeCCCcEEEEECCCCeEEE
Q 011978          156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVI  234 (473)
Q Consensus       156 l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~-~~s~s~dg~i~iwd~~~~~~~~  234 (473)
                      +++++++..+++++.+++|++||..+++.......+....+..+.|.|     ++.+ +++...++.|.+||+.+++.+.
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-----DNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-----TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-----CCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            467788889999999999999999988754332222212355666665     4443 4566678999999999988776


Q ss_pred             EecC-c-----cccEEEEEecCCC-eEEEeecC------------CeEEEEECCCCceee---eeeccCceEEEEEeccc
Q 011978          235 CLSG-H-----TLAVTCVKWGGDG-VIYTGSQD------------CTIKVWETTQGKLIR---ELKGHGHWVNSLALSTE  292 (473)
Q Consensus       235 ~~~~-h-----~~~v~~~~~~~~~-~l~s~~~d------------~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~~~~  292 (473)
                      .+.. +     ...+.+++|+++| .+++++.+            +.|.+||+.+++...   .+..+ ..+.+++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~d  158 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADD  158 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTT
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCC
Confidence            6542 2     2336788999998 56776655            899999998855432   22221 12333434332


Q ss_pred             ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc-cce--------
Q 011978          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ-QLV--------  363 (473)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v--------  363 (473)
                                                          .. ++.++.  .+.+||....+. ...+..+. ...        
T Consensus       159 ------------------------------------g~-l~~~~~--~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~  198 (349)
T 1jmx_B          159 ------------------------------------GS-LYVAGP--DIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVL  198 (349)
T ss_dssp             ------------------------------------SC-EEEESS--SEEEECTTTCCE-EEEECSTTCCCTTBCCCBCC
T ss_pred             ------------------------------------Cc-EEEccC--cEEEEeCCCCce-eccccccccCCccccCccce
Confidence                                                12 333333  388888754332 11222111 110        


Q ss_pred             ---------------eEEEECCCCcEEEEEE-CCCcEEEEeCCCCceE-EEeeCCccCEEEEEEec-CCCEEEEEeCCCc
Q 011978          364 ---------------NHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFV-AVFRGHVGPVYQISWSA-DSRLLLSGSKDST  425 (473)
Q Consensus       364 ---------------~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~-~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~  425 (473)
                                     ..+++++++....... ....+..+|..+++.. ..+..+...+.+++|+| ||++++++  ++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~  276 (349)
T 1jmx_B          199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR  276 (349)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE
T ss_pred             eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe
Confidence                           1133333321110000 0011222455444321 12233455788999999 99999888  889


Q ss_pred             EEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          426 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       426 i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      |++||+.+++....+..+ ..+.+++|+|||++|++++.++.|++|+
T Consensus       277 v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d  322 (349)
T 1jmx_B          277 LAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFN  322 (349)
T ss_dssp             EEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             EEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEe
Confidence            999999998877666532 3567999999999999999999999996

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=2.2e-18  Score=163.25  Aligned_cols=287  Identities=16%  Similarity=0.150  Sum_probs=182.7

Q ss_pred             ccccCCcccEEE-----EEECCCCCeEEEEeC-CC--eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978          102 ATIAGHTEAVLS-----VAFSPDGRQLASGSG-DT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (473)
Q Consensus       102 ~~~~gh~~~V~~-----~~~sp~~~~lat~s~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~  173 (473)
                      ..+..|......     .+|+|||++|+.++. ++  .|.+||+.++.......++...+..+.|+|||+.|+.++.++.
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~  103 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN  103 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence            345556655655     789999999998887 66  4888899888766555556555556789999999999999999


Q ss_pred             EEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEE----------------------eeCCCcEEEEECCCCe
Q 011978          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS----------------------ASKDGDARIWDVSLRK  231 (473)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s----------------------~s~dg~i~iwd~~~~~  231 (473)
                      |++||+.+++... ....+...+....|..   +.++..++.                      .+.+..|.+||+.+++
T Consensus       104 l~~~d~~~g~~~~-~~~~~~~~~~~~~~~~---~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          104 LMRVDLATLEENV-VYQVPAEWVGYGTWVA---NSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             EEEEETTTCCEEE-EEECCTTEEEEEEEEE---CTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             EEEEECCCCccee-eeechhhcccccceeE---CCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            9999999886532 2233334343333321   234444442                      2345789999999886


Q ss_pred             EEEEecCccccEEEEEecC-CCe-EEEeec------CCeEEEEECCCCceeeeeeccC--ceEEEEEecccceeeecccc
Q 011978          232 CVICLSGHTLAVTCVKWGG-DGV-IYTGSQ------DCTIKVWETTQGKLIRELKGHG--HWVNSLALSTEYALRTGAFD  301 (473)
Q Consensus       232 ~~~~~~~h~~~v~~~~~~~-~~~-l~s~~~------d~~i~~wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~  301 (473)
                      ... +..+...+..+.|+| ++. |+....      ...|.++|...+.. ..+..+.  ..+..+.++|+..       
T Consensus       180 ~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~-------  250 (388)
T 3pe7_A          180 STV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGS-------  250 (388)
T ss_dssp             EEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSS-------
T ss_pred             eEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCC-------
Confidence            544 334556788999999 884 544443      33788888765543 3333332  3566667776532       


Q ss_pred             CCCcccCCHHHHHHHHHhhhhcccCCCCceEEE-ecC----CceEEEEeCCCCCCCe-eeecCcccc---eeEEEECCCC
Q 011978          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-GSD----DFTMFLWEPAVSKQPK-TRMTGHQQL---VNHVYFSPDG  372 (473)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~----d~~i~iwd~~~~~~~~-~~~~~~~~~---v~~v~~sp~g  372 (473)
                                                   .|+. +..    +..+++||+....... ....++...   ...++|+|||
T Consensus       251 -----------------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg  301 (388)
T 3pe7_A          251 -----------------------------ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG  301 (388)
T ss_dssp             -----------------------------CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE
T ss_pred             -----------------------------EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC
Confidence                                         1222 111    2349999986554211 122221000   1223799999


Q ss_pred             cEEEEE---------ECCCcEEEEeCCCCceEEEeeCCcc-----------CEEEEEEecCCCEEEEEe-CCCcEEEEEC
Q 011978          373 QWVASA---------SFDKSIKLWNGTTGKFVAVFRGHVG-----------PVYQISWSADSRLLLSGS-KDSTLKVWDI  431 (473)
Q Consensus       373 ~~lasg---------s~d~~v~lwd~~~~~~~~~~~~h~~-----------~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~  431 (473)
                      +.|+..         ..+..|++||+.+++.. .+..|..           .+.+++|+|||+.|+..+ .+|...||.+
T Consensus       302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          302 SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             CCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            988854         44568999999987653 4444544           578899999999888766 4676666654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=6.1e-18  Score=171.95  Aligned_cols=288  Identities=14%  Similarity=0.023  Sum_probs=192.2

Q ss_pred             ccccCCcccEEEEEECCCCCeEEEE--eCCCeEEEEeCCCCceeEEEcCCCCCEE---------EEEEC--CCCCe-EEE
Q 011978          102 ATIAGHTEAVLSVAFSPDGRQLASG--SGDTTVRLWDLNTQTPMFKCTGHKNWVL---------CIAWS--ADGKH-LVS  167 (473)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~--s~d~~i~iwd~~~~~~~~~~~~~~~~v~---------~l~~s--~dg~~-l~s  167 (473)
                      ..+.+|...+..++|++++..+++.  +.++...||....+.....+..|...+.         ...|+  |||+. |+.
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            4567899999999999887666766  5688999999654444556666665555         56565  99998 776


Q ss_pred             Eec-CCeEEEeeCC--C-CccccccCCC-----cCCcEEEEEeceeccCCCCceEEEeeCC----------CcEEEEECC
Q 011978          168 GSK-AGELQCWDPQ--T-GKPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASKD----------GDARIWDVS  228 (473)
Q Consensus       168 ~~~-dg~i~iwd~~--~-~~~~~~~~~~-----~~~~v~~i~~~~~~~~~~~~~~~s~s~d----------g~i~iwd~~  228 (473)
                      ++. +..|.+|+..  . +...  .+..     |...+..+.|+|     ++++++.++.+          ..|.+||+.
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~--~l~~~~~~~~~~~~~~~~~sp-----Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~  169 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPR--PLTPVSAVGGGLRWADPVLLP-----ERGEVWCMAEEFTGEGPSDVRRFLAAVPLD  169 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCE--ECSCCCCSTTCEEEEEEEEET-----TTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred             EECCCCeEEEEcCCCCCCCCCE--eccCCccCCCCccccCcEECC-----CCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence            554 5678888876  3 4322  2333     566778888887     56788888776          589999998


Q ss_pred             C------CeEEEEec-CccccEEEEEecCCCe-EEEeecC--------CeEEEEECC-CC---ceeeeeeccCceEEEEE
Q 011978          229 L------RKCVICLS-GHTLAVTCVKWGGDGV-IYTGSQD--------CTIKVWETT-QG---KLIRELKGHGHWVNSLA  288 (473)
Q Consensus       229 ~------~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~~~d--------~~i~~wd~~-~~---~~~~~~~~~~~~v~~~~  288 (473)
                      +      ++.. .+. .+...+..++|++||. |+.++.+        ..|++||+. ++   +.......+...+..+.
T Consensus       170 ~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~  248 (662)
T 3azo_A          170 GSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE  248 (662)
T ss_dssp             STTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred             CCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence            8      5543 344 5556778889999994 6656644        379999998 56   33333344466777777


Q ss_pred             ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc--eEEEEeCCCCCCCeeeecCcccc----
Q 011978          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF--TMFLWEPAVSKQPKTRMTGHQQL----  362 (473)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~----  362 (473)
                      ++++.                                    ..++++..++  .+..||..... .......+...    
T Consensus       249 ~spdg------------------------------------~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~  291 (662)
T 3azo_A          249 WAPDG------------------------------------SLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPL  291 (662)
T ss_dssp             ECTTS------------------------------------CEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCC
T ss_pred             ECCCC------------------------------------eEEEEECCCCCeEEEEEECCCCc-eeecccccccccCcc
Confidence            77653                                    2356666667  56666653322 11111222211    


Q ss_pred             ----eeEEEECCCCcEEEEEECCCcEEEE--eCCCCceEEEeeCCccCEEEE-EEecCCCEEEEEeCCC--cEEEEECCC
Q 011978          363 ----VNHVYFSPDGQWVASASFDKSIKLW--NGTTGKFVAVFRGHVGPVYQI-SWSADSRLLLSGSKDS--TLKVWDIRT  433 (473)
Q Consensus       363 ----v~~v~~sp~g~~lasgs~d~~v~lw--d~~~~~~~~~~~~h~~~v~~v-~~sp~g~~l~s~s~Dg--~i~iwd~~~  433 (473)
                          +..++|+|+++++++++. +.++||  |..+++ +..+..|.+.+..+ +++++...+++++.+.  .|++||+.+
T Consensus       292 w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~  369 (662)
T 3azo_A          292 WTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVT  369 (662)
T ss_dssp             CSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred             ccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence                467899999999999998 999999  655555 66777787778777 4443333444555554  456667766


Q ss_pred             Cce
Q 011978          434 QKL  436 (473)
Q Consensus       434 ~~~  436 (473)
                      ++.
T Consensus       370 g~~  372 (662)
T 3azo_A          370 GRA  372 (662)
T ss_dssp             CCE
T ss_pred             Cce
Confidence            654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=5.9e-18  Score=160.65  Aligned_cols=290  Identities=16%  Similarity=0.143  Sum_probs=182.3

Q ss_pred             EEeCCCCceeEEEcCCCCC-----EEEEEECCCCCeEEEEecC---CeEEEeeCCCCccccccCCCcCCcEEEEEeceec
Q 011978          134 LWDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH  205 (473)
Q Consensus       134 iwd~~~~~~~~~~~~~~~~-----v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  205 (473)
                      ..|..++..+..+..+...     +.+++|||||++|+.....   ..|.+||+.+++... ...++......+.|+|  
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~sp--   90 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFIST--   90 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECT--
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECC--
Confidence            3466666666666544333     6778999999998877543   478889998876432 2222221111234544  


Q ss_pred             cCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEE-------------------EEecCCCe-EEEe-----ecC
Q 011978          206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC-------------------VKWGGDGV-IYTG-----SQD  260 (473)
Q Consensus       206 ~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~-l~s~-----~~d  260 (473)
                         ++.+++.++.++.+.+||+.+++.......+......                   +.|++++. ++.+     ..+
T Consensus        91 ---dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~  167 (396)
T 3c5m_A           91 ---DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT  167 (396)
T ss_dssp             ---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred             ---CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence               6778989999999999999988765555444332222                   23455552 2222     456


Q ss_pred             CeEEEEECCCCceeeeeeccCceEEEEEecc-cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC-
Q 011978          261 CTIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-  338 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-  338 (473)
                      ..|.+||+.+++..... .+...+..+.+++ +..                                    .++..+.+ 
T Consensus       168 ~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~------------------------------------~l~~~~~~~  210 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDS------------------------------------TVGFCHEGP  210 (396)
T ss_dssp             EEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEE------------------------------------EEEEEECSC
T ss_pred             ceEEEEECCCCcEEeec-cCCcccccceECCCCCC------------------------------------EEEEEecCC
Confidence            78999999887754433 3455566677766 321                                    12222211 


Q ss_pred             -----ceEEEEeCCCCCCCeeeecCc--ccceeEEEECCCCcEEEEEECC-----CcEEEEeCCCCceEEEeeCCccCEE
Q 011978          339 -----FTMFLWEPAVSKQPKTRMTGH--QQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTTGKFVAVFRGHVGPVY  406 (473)
Q Consensus       339 -----~~i~iwd~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~lasgs~d-----~~v~lwd~~~~~~~~~~~~h~~~v~  406 (473)
                           ..|.+|+..... . ..+..+  ...+..++|+|||++|+.++.+     +.|++||+.+++........  ...
T Consensus       211 ~~~~~~~l~~~d~~~~~-~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~  286 (396)
T 3c5m_A          211 HDLVDARMWLVNEDGSN-V-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS  286 (396)
T ss_dssp             SSSCSCCCEEEETTSCC-C-EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE
T ss_pred             CCCCCceEEEEECCCCc-e-eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC
Confidence                 457778764332 1 222222  2357889999999988877654     44999999988754433221  233


Q ss_pred             EEEEec-CCCEEEEEe----------------CCCcEEEEECCCCceeecccccCC-----------CEEEEEEeeCCCE
Q 011978          407 QISWSA-DSRLLLSGS----------------KDSTLKVWDIRTQKLKQDLPGHAD-----------EVFAVDWSPDGEK  458 (473)
Q Consensus       407 ~v~~sp-~g~~l~s~s----------------~Dg~i~iwd~~~~~~~~~~~~h~~-----------~i~~l~~s~d~~~  458 (473)
                       +.|+| ||+++++++                .++.|++||+.+++.. .+..+..           .+..+.|+|||++
T Consensus       287 -~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  364 (396)
T 3c5m_A          287 -HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDG  364 (396)
T ss_dssp             -EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred             -CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCe
Confidence             89999 999888765                3468999999877643 3444433           2556789999999


Q ss_pred             EEEEeC-CCcEEecc
Q 011978          459 VASGGK-DRVLKLWM  472 (473)
Q Consensus       459 l~s~~~-D~~i~~w~  472 (473)
                      |+.++. ++...||.
T Consensus       365 l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          365 VLFTSDFEGVPAIYI  379 (396)
T ss_dssp             EEEEECTTSSCEEEE
T ss_pred             EEEEecCCCCceEEE
Confidence            887764 56666663

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=8.5e-17  Score=148.63  Aligned_cols=248  Identities=13%  Similarity=0.148  Sum_probs=179.4

Q ss_pred             CCCEEEEEECCCCCeEEEEecC------------------------CeEEEeeCCCCccccccCCCcCCcEEEEEeceec
Q 011978          150 KNWVLCIAWSADGKHLVSGSKA------------------------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH  205 (473)
Q Consensus       150 ~~~v~~l~~s~dg~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  205 (473)
                      -+.+.+++++|+|+.+++...+                        +.|.+||..+++.......++-....++++.|  
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~--  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT--  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence            3568999999999988887776                        47999999888765433334445677887765  


Q ss_pred             cCCCCceEEEeeCCCcEEEEECCCCe-EEEEe---------cCccccEEEEEecC-CCeEEEee--cCCeEEEEECCCCc
Q 011978          206 LNAPCRRFVSASKDGDARIWDVSLRK-CVICL---------SGHTLAVTCVKWGG-DGVIYTGS--QDCTIKVWETTQGK  272 (473)
Q Consensus       206 ~~~~~~~~~s~s~dg~i~iwd~~~~~-~~~~~---------~~h~~~v~~~~~~~-~~~l~s~~--~d~~i~~wd~~~~~  272 (473)
                         ++..+++...++.|++||..... .+..+         .++......+++++ ++.++.+.  .++.|++|| .+|+
T Consensus       101 ---~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~  176 (329)
T 3fvz_A          101 ---DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK  176 (329)
T ss_dssp             ---TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC
T ss_pred             ---CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC
Confidence               45677888888999999986542 34444         34455788999998 77655554  589999998 5555


Q ss_pred             eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC
Q 011978          273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP  352 (473)
Q Consensus       273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  352 (473)
                      .+..+...+                                                      ..+              
T Consensus       177 ~~~~~~~~g------------------------------------------------------~~~--------------  188 (329)
T 3fvz_A          177 FVTQWGEES------------------------------------------------------SGS--------------  188 (329)
T ss_dssp             EEEEECEEC------------------------------------------------------CSS--------------
T ss_pred             EEEEeccCC------------------------------------------------------CCC--------------
Confidence            544321100                                                      000              


Q ss_pred             eeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCceEEEee--CCccCEEEEEEec------CCCEEEEEeCC
Q 011978          353 KTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQISWSA------DSRLLLSGSKD  423 (473)
Q Consensus       353 ~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~sp------~g~~l~s~s~D  423 (473)
                       ....++......++++|+ +.++++...++.|++||..+|+.+..+.  .+...+.+++|+|      +|+..++.+.+
T Consensus       189 -~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~  267 (329)
T 3fvz_A          189 -SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEP  267 (329)
T ss_dssp             -SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCC
T ss_pred             -CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCC
Confidence             000012234678999998 7888888888999999999899888874  4566789999999      33333333445


Q ss_pred             CcEEEEECCCCceeecc---cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          424 STLKVWDIRTQKLKQDL---PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       424 g~i~iwd~~~~~~~~~~---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ..|++||..+++.+..+   .++.....+++++|||+.+++...+++|++|.
T Consensus       268 ~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          268 VQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             CCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             cEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            68999999999888776   35667799999999998889999999999985

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=1.5e-16  Score=147.07  Aligned_cols=244  Identities=17%  Similarity=0.165  Sum_probs=174.6

Q ss_pred             cccEEEEEECCCCCeEEEEeCC------------------------CeEEEEeCCCCceeEEEc-CCCCCEEEEEECCCC
Q 011978          108 TEAVLSVAFSPDGRQLASGSGD------------------------TTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADG  162 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d------------------------~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg  162 (473)
                      -..+.+++++|+|+.+++.+.+                        ++|.+||..+++...... ++-.....++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3579999999999999888777                        479999998887655443 444578999999999


Q ss_pred             CeEEEEecCCeEEEeeCCCCc-cccccC--------CCcCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCCCeE
Q 011978          163 KHLVSGSKAGELQCWDPQTGK-PSGNPL--------SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKC  232 (473)
Q Consensus       163 ~~l~s~~~dg~i~iwd~~~~~-~~~~~~--------~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~  232 (473)
                      +.+++...++.|++||..... .....-        .++-....++++.|.    .+..+++.+ .++.|++|| ..++.
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~----~g~lyv~d~~~~~~I~~~~-~~g~~  177 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS----TGAVFVSDGYCNSRIVQFS-PSGKF  177 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT----TCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC----CCeEEEEeCCCCCeEEEEc-CCCCE
Confidence            988888888999999986442 111110        234446777877652    345666665 689999999 55666


Q ss_pred             EEEec----------CccccEEEEEecCC-CeE-EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978          233 VICLS----------GHTLAVTCVKWGGD-GVI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (473)
Q Consensus       233 ~~~~~----------~h~~~v~~~~~~~~-~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (473)
                      +..+.          ++......++++++ +.+ ++...++.|++||..+|+.+..+...                    
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~--------------------  237 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA--------------------  237 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT--------------------
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc--------------------
Confidence            65553          23344788999987 654 45567889999998877766544211                    


Q ss_pred             cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC------CCcE
Q 011978          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQW  374 (473)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp------~g~~  374 (473)
                                                                               .+...+..++|+|      +|+.
T Consensus       238 ---------------------------------------------------------~~~~~~~~~~~~pg~~~~~~g~~  260 (329)
T 3fvz_A          238 ---------------------------------------------------------SFGRNVFAISYIPGFLFAVNGKP  260 (329)
T ss_dssp             ---------------------------------------------------------TTTTCEEEEEEETTEEEEEECCC
T ss_pred             ---------------------------------------------------------ccCCCcceeeecCCEEEEeCCCE
Confidence                                                                     0112234555666      3333


Q ss_pred             EEEEECCCcEEEEeCCCCceEEEee---CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          375 VASASFDKSIKLWNGTTGKFVAVFR---GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       375 lasgs~d~~v~lwd~~~~~~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      .++...+..|++||..+++.+..+.   ++...+.+++++|+|.++++...++.|++|++..
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            3333445689999999999988873   6777899999999998888888899999999864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=8e-16  Score=139.12  Aligned_cols=241  Identities=15%  Similarity=0.249  Sum_probs=170.2

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc------CCCCCEEEEEE-CCCCCeEEEEec-CCeEEE
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAW-SADGKHLVSGSK-AGELQC  176 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~------~~~~~v~~l~~-s~dg~~l~s~~~-dg~i~i  176 (473)
                      .+|-..+.+++++|+++.+++...++.|++||... ..+..+.      ++...+..+++ .+++..+++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            46777899999999999888888899999999874 4444442      23456889999 567766665543 899999


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--CccccEEEEEecCCCeE
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGVI  254 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~l  254 (473)
                      || .+++........+...+.++.+.|     ++..+++...++.|.+||.. ++.+..+.  ++...+.++++++++.+
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDN-----KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECT-----TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeC-----CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE
Confidence            99 455543322233445677777765     44567777778999999965 44444443  45556889999998865


Q ss_pred             EE-eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978          255 YT-GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (473)
Q Consensus       255 ~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (473)
                      +. ...++.|++||.. ++.+..+..                                                      
T Consensus       178 ~v~~~~~~~i~~~~~~-g~~~~~~~~------------------------------------------------------  202 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYE-GQYLRQIGG------------------------------------------------------  202 (286)
T ss_dssp             EEEEGGGTEEEEEETT-CCEEEEESC------------------------------------------------------
T ss_pred             EEEECCCCEEEEEcCC-CCEEEEEcc------------------------------------------------------
Confidence            54 4568899999863 332221110                                                      


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC-cEEEEeCCCCceEEEeeCCc--cCEEEEEE
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHV--GPVYQISW  410 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~-~v~lwd~~~~~~~~~~~~h~--~~v~~v~~  410 (473)
                                             .++...+..++++|+|+++++...++ .|++||. +++.+..+..+.  ..+.++++
T Consensus       203 -----------------------~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~  258 (286)
T 1q7f_A          203 -----------------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL  258 (286)
T ss_dssp             -----------------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred             -----------------------CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence                                   01113467899999999998888876 9999995 566676665543  34789999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCC
Q 011978          411 SADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       411 sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      +|+|+++++ +.|++|++|+...
T Consensus       259 ~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          259 MDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             ETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CCCCcEEEE-CCCCeEEEEEccc
Confidence            999987777 6799999999764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=1.7e-17  Score=155.71  Aligned_cols=251  Identities=11%  Similarity=0.072  Sum_probs=165.1

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCC-CCceeEEEc--CCCCCEEEEEECCCCCe--EEEEe-------------
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLN-TQTPMFKCT--GHKNWVLCIAWSADGKH--LVSGS-------------  169 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~-~~~~~~~~~--~~~~~v~~l~~s~dg~~--l~s~~-------------  169 (473)
                      ...+..++|+|||++|++++.+ .|.+|++. +++......  .+ +...+++|+|||++  ++++.             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            3457789999999999998888 99999997 665432221  11 23556899999995  44553             


Q ss_pred             cCCeEEEeeCC-CCccccccC---CCcCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECC-CCeEE--EEec--Cc
Q 011978          170 KAGELQCWDPQ-TGKPSGNPL---SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVS-LRKCV--ICLS--GH  239 (473)
Q Consensus       170 ~dg~i~iwd~~-~~~~~~~~~---~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~-~~~~~--~~~~--~h  239 (473)
                      .+|.+.+|++. +++......   ..+...+.++.|+|     ++++++++. .++.|++||+. +++..  ..+.  .|
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-----dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-----TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-----CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence            68999999987 354321111   12445678888877     455666554 46799999998 66543  2232  23


Q ss_pred             cccEEEEEecCCC-eEEEee-cCCeEEEEECC--CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978          240 TLAVTCVKWGGDG-VIYTGS-QDCTIKVWETT--QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (473)
Q Consensus       240 ~~~v~~~~~~~~~-~l~s~~-~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (473)
                      ...+..++|+++| .+++++ .+++|.+|++.  +++......       .+...+                        
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~~~~~~------------------------  240 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH-------SFPLIP------------------------  240 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------EEESSC------------------------
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc-------eEEcCC------------------------
Confidence            5668899999998 465555 47899999764  343321000       000000                        


Q ss_pred             HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccc------ceeEEE-ECCCCcEEEEEECCC------
Q 011978          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ------LVNHVY-FSPDGQWVASASFDK------  382 (473)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~v~~v~-~sp~g~~lasgs~d~------  382 (473)
                                                      ..      ..+|..      .+..++ |+|||++|+++..+.      
T Consensus       241 --------------------------------~~------~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~  282 (365)
T 1jof_A          241 --------------------------------PG------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG  282 (365)
T ss_dssp             --------------------------------TT------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCC
T ss_pred             --------------------------------CC------cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCC
Confidence                                            00      001111      467899 999999988776432      


Q ss_pred             cEEEEeCC-CCceEE---EeeCCccCEEEEEEec---CCCEEEEEeCC-CcEEEEECCCC
Q 011978          383 SIKLWNGT-TGKFVA---VFRGHVGPVYQISWSA---DSRLLLSGSKD-STLKVWDIRTQ  434 (473)
Q Consensus       383 ~v~lwd~~-~~~~~~---~~~~h~~~v~~v~~sp---~g~~l~s~s~D-g~i~iwd~~~~  434 (473)
                      .|++|++. +++...   ....+...+..++|+|   ||++|++++.+ +.|++|++...
T Consensus       283 ~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            89999986 566543   2333444567799999   89999998864 89999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=5.2e-17  Score=154.13  Aligned_cols=282  Identities=12%  Similarity=0.035  Sum_probs=173.1

Q ss_pred             cEEEEEECCCCCeEEEEeCC---CeEEEEeCCCCceeEEEcCCCCC-EEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978          110 AVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d---~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  185 (473)
                      .+.+++|+|||++|+..+..   ..|.+||+.+++... +..+... ...+.|+|||++|+.++.++.|++||+.+++..
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence            36678999999998877543   478888998876533 3333333 233789999999999999999999999887643


Q ss_pred             cccCCCcCCcEEE---EEece-----------eccCCCCceEEEe-----eCCCcEEEEECCCCeEEEEecCccccEEEE
Q 011978          186 GNPLSGHKKWITG---ISWEP-----------VHLNAPCRRFVSA-----SKDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (473)
Q Consensus       186 ~~~~~~~~~~v~~---i~~~~-----------~~~~~~~~~~~s~-----s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  246 (473)
                      . ....+......   +.+..           ....+++..++..     ..+..|.+||+.+++..... .+...+..+
T Consensus       116 ~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~  193 (396)
T 3c5m_A          116 V-IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHP  193 (396)
T ss_dssp             E-EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEE
T ss_pred             E-EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccc
Confidence            2 12222222221   11110           1122333343332     35668999999887765444 456678899


Q ss_pred             EecC-CCe-EEEeecC------CeEEEEECCCCceeeeeecc-CceEEEEEecccceeeeccccCCCcccCCHHHHHHHH
Q 011978          247 KWGG-DGV-IYTGSQD------CTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (473)
Q Consensus       247 ~~~~-~~~-l~s~~~d------~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (473)
                      .|++ ++. |+..+.+      ..|.+||+..++........ ...+..+.++++..                       
T Consensus       194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~-----------------------  250 (396)
T 3c5m_A          194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS-----------------------  250 (396)
T ss_dssp             EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSS-----------------------
T ss_pred             eECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCC-----------------------
Confidence            9999 663 5544333      46888888765433222211 33566667766532                       


Q ss_pred             HhhhhcccCCCCceEEEecC-----CceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEE------------
Q 011978          318 LERYNKIKGNAPERLVSGSD-----DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASAS------------  379 (473)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs------------  379 (473)
                                   .++..+.     .+.+++||+......  .+..... .. ++|+| ||+++++++            
T Consensus       251 -------------~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~  313 (396)
T 3c5m_A          251 -------------AMAYVSYFKGQTDRVIYKANPETLENE--EVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADS  313 (396)
T ss_dssp             -------------CEEEEEEETTTCCEEEEEECTTTCCEE--EEEECCS-EE-EEEECSSSSEEEEEECCC---------
T ss_pred             -------------EEEEEecCCCCccceEEEEECCCCCeE--EeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccc
Confidence                         2333322     245999997654321  1111111 23 88999 999988765            


Q ss_pred             ----CCCcEEEEeCCCCceEEEeeCCcc-----------CEEEEEEecCCCEEEEEeC-CCcEEEE--ECCCCc
Q 011978          380 ----FDKSIKLWNGTTGKFVAVFRGHVG-----------PVYQISWSADSRLLLSGSK-DSTLKVW--DIRTQK  435 (473)
Q Consensus       380 ----~d~~v~lwd~~~~~~~~~~~~h~~-----------~v~~v~~sp~g~~l~s~s~-Dg~i~iw--d~~~~~  435 (473)
                          .+..|++||..+++... +..+..           .+..++|+|||+.|+.++. ++...||  |+.+++
T Consensus       314 ~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          314 YNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             -CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             cccCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence                24689999998876533 333433           2567899999998887765 4554454  555543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.76  E-value=6.2e-16  Score=144.01  Aligned_cols=270  Identities=12%  Similarity=0.120  Sum_probs=173.9

Q ss_pred             ccEEEEEECCCCCeEEEEe---------CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---C--eE
Q 011978          109 EAVLSVAFSPDGRQLASGS---------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---G--EL  174 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g--~i  174 (473)
                      ..+..+++  ||+++|...         .++.|.+||+.++.... +    ..+.++.|||||++|+.++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            34666777  898887642         26789999998876433 3    457889999999999987754   3  47


Q ss_pred             EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC---------------------------CcEEEEEC
Q 011978          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD---------------------------GDARIWDV  227 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d---------------------------g~i~iwd~  227 (473)
                      .+|++.+++...  +..+.. +..+.|+|     ++..++.++.+                           ..|.+||+
T Consensus        88 ~~~~~~~g~~~~--l~~~~~-~~~~~wsp-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~  159 (347)
T 2gop_A           88 WVADLETLSSKK--ILEAKN-IRSLEWNE-----DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT  159 (347)
T ss_dssp             EEEETTTTEEEE--EEEESE-EEEEEECT-----TSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred             EEEECCCCceEE--EEcCCC-ccceeECC-----CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence            888888776432  222233 78888877     55667766532                           57899999


Q ss_pred             CCCeEEEEecCccccEEEEEecCCCeEEEeecCC-------eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978          228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (473)
Q Consensus       228 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (473)
                      .+++.+..+.. . .+..+.|+++|+++++..+.       ...+|.+.+++. ..+..+ ..+..+  +|+.       
T Consensus       160 ~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg-------  226 (347)
T 2gop_A          160 ESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDG-------  226 (347)
T ss_dssp             TTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECS-------
T ss_pred             CCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCC-------
Confidence            98876344433 3 67889999999555554432       334444334433 333322 222222  3221       


Q ss_pred             cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC--------CceEEEEeCCCCCCCeeeecCcccceeE-EEECCC
Q 011978          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--------DFTMFLWEPAVSKQPKTRMTGHQQLVNH-VYFSPD  371 (473)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------d~~i~iwd~~~~~~~~~~~~~~~~~v~~-v~~sp~  371 (473)
                                                   ..++..+.        ...+.+||   .........++...+.. ++|+ |
T Consensus       227 -----------------------------~~l~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~~~~~~~~~~~~~~s-d  273 (347)
T 2gop_A          227 -----------------------------ERILLYGKPEKKYMSEHNKLYIYD---GKEVMGILDEVDRGVGQAKIKD-G  273 (347)
T ss_dssp             -----------------------------SCEEEEECCSSSCCCSSCEEEEEC---SSCEEESSTTCCSEEEEEEEET-T
T ss_pred             -----------------------------CEEEEEEccccCCccccceEEEEC---CCceEeccccCCcccCCccEEc-C
Confidence                                         22333332        24678887   22233334455667776 8999 8


Q ss_pred             CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcE-EEEECCCCceeecccccCCC
Q 011978          372 GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTL-KVWDIRTQKLKQDLPGHADE  446 (473)
Q Consensus       372 g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i-~iwd~~~~~~~~~~~~h~~~  446 (473)
                      + ++++++.++.++|| +.+++....+ .+.+.|.+++|+|  .++++++.++.. .||.+. ++ ...+..|...
T Consensus       274 g-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~  342 (347)
T 2gop_A          274 K-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP  342 (347)
T ss_dssp             E-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred             c-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence            8 99999999999999 8766654444 4577899999999  677777777654 777665 44 3446555543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=5.7e-17  Score=166.59  Aligned_cols=292  Identities=13%  Similarity=0.107  Sum_probs=177.9

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCc-----EEEEEeceeccCCCCceEEEeeCC-------
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKW-----ITGISWEPVHLNAPCRRFVSASKD-------  219 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----v~~i~~~~~~~~~~~~~~~s~s~d-------  219 (473)
                      ...++.|+|||++++++  |++|++||+.+++... .+.+|...     ...+.|+|     ++.+++.++.+       
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sp-----dg~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV-FLENSTFDEFGHSINDYSISP-----DGQFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE-EECTTTTTTCCSCCCEEEECT-----TSSEEEEEEEEEECSSSC
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEE-EEechhhhhhcccccceEECC-----CCCEEEEEECCeeeEEEc
Confidence            35678999999888886  9999999999887542 34444432     22345554     67788887775       


Q ss_pred             --CcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeee-eccCceE------------
Q 011978          220 --GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL-KGHGHWV------------  284 (473)
Q Consensus       220 --g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v------------  284 (473)
                        +.+.+||+.++++. .+..|...+...+|+|||..++-..|+.|++|++.+++..+.. .++...+            
T Consensus        90 ~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           90 YTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             EEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             cceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence              56679999998864 4667777899999999995333346899999999887654321 2222212            


Q ss_pred             -----EEEEecccce-eeeccccCCCc-ccCCHHHHHHHHHhhhhcccCCCCce--E---EEec--CCceEEEEeCCC--
Q 011978          285 -----NSLALSTEYA-LRTGAFDHTGK-QYSSPEEMKKAALERYNKIKGNAPER--L---VSGS--DDFTMFLWEPAV--  348 (473)
Q Consensus       285 -----~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--l---~~~~--~d~~i~iwd~~~--  348 (473)
                           ..+.++|+.. +.....+.... .+..+.         ........+..  +   ..|.  ...++++||+..  
T Consensus       169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~---------~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~  239 (740)
T 4a5s_A          169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF---------YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS  239 (740)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE---------CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred             hcCCCcceEECCCCCEEEEEEEcccCCceEEEEe---------ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence                 2366777754 22222232211 000000         00000000000  0   0111  123688999876  


Q ss_pred             -CCC-Ceeeec------CcccceeEEEECCCCcEEEEEEC----CCcEEEEeCCCCc----eE--EEe--eCCccCEE--
Q 011978          349 -SKQ-PKTRMT------GHQQLVNHVYFSPDGQWVASASF----DKSIKLWNGTTGK----FV--AVF--RGHVGPVY--  406 (473)
Q Consensus       349 -~~~-~~~~~~------~~~~~v~~v~~sp~g~~lasgs~----d~~v~lwd~~~~~----~~--~~~--~~h~~~v~--  406 (473)
                       ... ....+.      +|...+..++|+|||+.++....    +..|++||..+++    +.  ..+  .+|.+.|.  
T Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~  319 (740)
T 4a5s_A          240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF  319 (740)
T ss_dssp             SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred             CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence             421 122232      37778999999999997776543    2379999999887    22  112  45665554  


Q ss_pred             ---EEEEecCCCEEE-EEeC-CC--cEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978          407 ---QISWSADSRLLL-SGSK-DS--TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       407 ---~v~~sp~g~~l~-s~s~-Dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                         .++|+|||+.|+ ..+. +|  .|++||+.+++..+ +....-.+..+. .+|++.|+..+
T Consensus       320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~-~~d~~~i~f~~  381 (740)
T 4a5s_A          320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIE-ALTSDYLYYIS  381 (740)
T ss_dssp             SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEE-EECSSEEEEEE
T ss_pred             cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEE-EEeCCEEEEEE
Confidence               789999999877 6664 44  58889988766544 333344565543 35566665443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=2.9e-15  Score=135.39  Aligned_cols=234  Identities=14%  Similarity=0.248  Sum_probs=165.3

Q ss_pred             CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec------CccccEEEEEe-cCCCeEEEeec--CC
Q 011978          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS------GHTLAVTCVKW-GGDGVIYTGSQ--DC  261 (473)
Q Consensus       191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~------~h~~~v~~~~~-~~~~~l~s~~~--d~  261 (473)
                      ++-....++++.+     ++..+++...++.|.+||.. ++.+..+.      ++...+.++++ .+++.++.+..  ++
T Consensus        27 g~~~~p~~v~~~~-----~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~  100 (286)
T 1q7f_A           27 GQFTEPSGVAVNA-----QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH  100 (286)
T ss_dssp             TCBSCEEEEEECT-----TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred             CccCCCceEEECC-----CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence            3445567777654     44567777888999999987 55555443      34457889999 57777666553  89


Q ss_pred             eEEEEECCCCceeeeeec-cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          262 TIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      .|++|| .+++.+..+.. +......+++.++                                    ...+++...++.
T Consensus       101 ~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~------------------------------------g~l~v~~~~~~~  143 (286)
T 1q7f_A          101 QIQIYN-QYGQFVRKFGATILQHPRGVTVDNK------------------------------------GRIIVVECKVMR  143 (286)
T ss_dssp             EEEEEC-TTSCEEEEECTTTCSCEEEEEECTT------------------------------------SCEEEEETTTTE
T ss_pred             EEEEEC-CCCcEEEEecCccCCCceEEEEeCC------------------------------------CCEEEEECCCCE
Confidence            999999 66776665532 2234555555443                                    224566667889


Q ss_pred             EEEEeCCCCCCCeeeec--CcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC--ccCEEEEEEecCCCE
Q 011978          341 MFLWEPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRL  416 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h--~~~v~~v~~sp~g~~  416 (473)
                      +.+|+...  .....+.  ++...+..++++|+|+++++.+.++.|++||. +++.+..+..+  ...+..++++|+|++
T Consensus       144 i~~~~~~g--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l  220 (286)
T 1q7f_A          144 VIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEI  220 (286)
T ss_dssp             EEEECTTS--CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCE
T ss_pred             EEEEcCCC--CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCE
Confidence            99998542  2222221  34456899999999998888888999999997 45666666433  467899999999998


Q ss_pred             EEEEeCCC-cEEEEECCCCceeecccccC--CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          417 LLSGSKDS-TLKVWDIRTQKLKQDLPGHA--DEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       417 l~s~s~Dg-~i~iwd~~~~~~~~~~~~h~--~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +++...++ .|++||.. ++.+..+..+.  ..+.+++++|+|+.+++ +.|++|++|.
T Consensus       221 ~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          221 LIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             EEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred             EEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence            88888776 99999964 45555554433  34789999999987777 6799999995

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=4.3e-16  Score=144.24  Aligned_cols=265  Identities=11%  Similarity=0.090  Sum_probs=179.3

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~  189 (473)
                      .|.+++|+|++..++..+.++.++.|   .......+..+...+.+++|+|+|+.++++..++.|.+||..+++.... .
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~-~   82 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-F   82 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-E
T ss_pred             ccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-e
Confidence            46778899988888777888999999   3345555666777789999999999777888899999999987764322 2


Q ss_pred             CCcCCcEEEEEeceeccCCCCceEEEeeCC----CcEEEEECCCCeEEEEec--CccccEEEEEecCCCeEEEeecC---
Q 011978          190 SGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGVIYTGSQD---  260 (473)
Q Consensus       190 ~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d----g~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~l~s~~~d---  260 (473)
                      ..+...+.++.+.|     ++..+++...+    +.|.+||..++.....+.  .+...+.++.+++++.++.++..   
T Consensus        83 ~~~~~~~~~i~~~~-----dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  157 (333)
T 2dg1_A           83 VSHKANPAAIKIHK-----DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS  157 (333)
T ss_dssp             ECSSSSEEEEEECT-----TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred             eCCCCCcceEEECC-----CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence            23456788888765     34456655555    689999988776543332  34456888999998876655442   


Q ss_pred             ----CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          261 ----CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       261 ----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                          +.|..+|..+++...                                                             
T Consensus       158 ~~~~~~l~~~~~~~~~~~~-------------------------------------------------------------  176 (333)
T 2dg1_A          158 TNPLGGVYYVSPDFRTVTP-------------------------------------------------------------  176 (333)
T ss_dssp             TBCCEEEEEECTTSCCEEE-------------------------------------------------------------
T ss_pred             cCCCceEEEEeCCCCEEEE-------------------------------------------------------------
Confidence                233333322211100                                                             


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE-EECCCcEEEEeCCC-CceEEE--------eeCCccCEE
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTT-GKFVAV--------FRGHVGPVY  406 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las-gs~d~~v~lwd~~~-~~~~~~--------~~~h~~~v~  406 (473)
                                         +..+...+..++|+|+|++|+. .+.++.|.+||..+ +..+..        +.++ ..+.
T Consensus       177 -------------------~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~  236 (333)
T 2dg1_A          177 -------------------IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD  236 (333)
T ss_dssp             -------------------EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred             -------------------eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence                               0001123567899999986654 45578999999863 333221        1222 3678


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC------CCEEEEEEeeCCCEEEEEeCC
Q 011978          407 QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA------DEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~------~~i~~l~~s~d~~~l~s~~~D  465 (473)
                      .++++++|+++++...++.|.+||.. ++....+..+.      ..+.+++|+||++.|..++.+
T Consensus       237 ~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          237 SCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            89999999988888888999999984 55444443332      257899999998777655554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.74  E-value=6.6e-14  Score=127.10  Aligned_cols=276  Identities=11%  Similarity=0.082  Sum_probs=187.3

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      ..+...+.+++++++|...++...++.|.+||.. +... .....+...+.+++++++|..+++...++.|..||.. ++
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~   88 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI   88 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence            3455689999999999987776668999999988 4322 2223345679999999999877777778899999986 33


Q ss_pred             cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE-EecCccccEEEEEecCCCeEEEee-cCC
Q 011978          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGS-QDC  261 (473)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~s~~-~d~  261 (473)
                      ............+.++.+.+     ++..+++...++.|..||. +++... ....+...+.++++++++.++.+. .++
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  162 (299)
T 2z2n_A           89 IKEYTLPNPDSAPYGITEGP-----NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNN  162 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             EEEEeCCCcCCCceeeEECC-----CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence            22222222344567776654     3456666666788999998 444332 233344567888888887665544 457


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      .|..||. +++... +                                                                
T Consensus       163 ~i~~~~~-~g~~~~-~----------------------------------------------------------------  176 (299)
T 2z2n_A          163 AIGRITE-SGDITE-F----------------------------------------------------------------  176 (299)
T ss_dssp             EEEEECT-TCCEEE-E----------------------------------------------------------------
T ss_pred             EEEEEcC-CCcEEE-e----------------------------------------------------------------
Confidence            7888876 443211 0                                                                


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEE
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~  420 (473)
                         .          .......+..++++++|++.++...++.|.+||. +++.... ...+...+.+++++++|++.++.
T Consensus       177 ---~----------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          177 ---K----------IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             ---E----------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             ---e----------CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence               0          0011123667899999997777767789999998 6664432 33355678999999999977776


Q ss_pred             eCCCcEEEEECCCCcee-ecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          421 SKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       421 s~Dg~i~iwd~~~~~~~-~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                      ..++.|..||.. ++.. ..+..+...+.++.+ ++|+..++.+.++.+++
T Consensus       243 ~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~  291 (299)
T 2z2n_A          243 WGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL  291 (299)
T ss_dssp             TTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred             cCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence            678899999984 4432 224455567899999 89887777665555544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.73  E-value=5.8e-16  Score=157.36  Aligned_cols=282  Identities=12%  Similarity=0.044  Sum_probs=180.3

Q ss_pred             EcCCCCCEEEEEECCCCCeEEEE--ecCCeEEEeeCCCCccccccCCCcCCcEE---------EEEeceeccCCCCce-E
Q 011978          146 CTGHKNWVLCIAWSADGKHLVSG--SKAGELQCWDPQTGKPSGNPLSGHKKWIT---------GISWEPVHLNAPCRR-F  213 (473)
Q Consensus       146 ~~~~~~~v~~l~~s~dg~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---------~i~~~~~~~~~~~~~-~  213 (473)
                      +.+|...+..++|++++-.+++.  +.++...||....+.... .+..|...+.         ...|..   ++++.+ +
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~---SPDg~~~l   94 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE-SALPAPWNVRNRVFEYSGFPWAGVP---RPAGGPLL   94 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE-ESSCTTCCBCCCGGGTCCCCEEEEC---CSSSSCEE
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc-eeCCCCccccccccccCCccceeee---ecCCCeEE
Confidence            44678889999999876556665  457889999854333222 2334443333         333330   135566 5


Q ss_pred             EEeeC-CCcEEEEECC--C-CeEEEEecC-----ccccEEEEEecCCC-eEEEeecC----------CeEEEEECCC---
Q 011978          214 VSASK-DGDARIWDVS--L-RKCVICLSG-----HTLAVTCVKWGGDG-VIYTGSQD----------CTIKVWETTQ---  270 (473)
Q Consensus       214 ~s~s~-dg~i~iwd~~--~-~~~~~~~~~-----h~~~v~~~~~~~~~-~l~s~~~d----------~~i~~wd~~~---  270 (473)
                      +..+. +..|.+|++.  . +. ...+..     |...+.+++|++|| .|+.++.|          ..|++||+.+   
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            54443 5566666665  2 33 344444     66788899999998 47666666          5899999987   


Q ss_pred             ---Cceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC--------
Q 011978          271 ---GKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD--------  338 (473)
Q Consensus       271 ---~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------  338 (473)
                         ++. ..+. .+...+..++++|+.                                    ..|+..+.+        
T Consensus       174 ~~~~~~-~~l~~~~~~~~~~~~~SpDG------------------------------------~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          174 ADRSAV-RELSDDAHRFVTGPRLSPDG------------------------------------RQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             TCGGGS-EESSCSCSSEECCCEECTTS------------------------------------SEEEEEEECTTCCTTTC
T ss_pred             ccCCce-eEEEecCCCcccCceECCCC------------------------------------CEEEEEECCCCCCCCCC
Confidence               543 3444 444555566666653                                    234433322        


Q ss_pred             ceEEEEeCCCCC---CCeeeecCcccceeEEEECCCCcEEEEEECCC--cEEEEeCCCCceEEEeeCCccC--------E
Q 011978          339 FTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGHVGP--------V  405 (473)
Q Consensus       339 ~~i~iwd~~~~~---~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~--~v~lwd~~~~~~~~~~~~h~~~--------v  405 (473)
                      ..|++||+....   .......++...+..++|+|||+++++++.++  .|.+||..+++.......+...        +
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~  296 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM  296 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTC
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccC
Confidence            479999986322   22333344567889999999999888888888  5666777677765554444332        5


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEE--ECCCCceeecccccCCCEEEE-EEeeCCCEEEEEeCCCcEEec
Q 011978          406 YQISWSADSRLLLSGSKDSTLKVW--DIRTQKLKQDLPGHADEVFAV-DWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       406 ~~v~~sp~g~~l~s~s~Dg~i~iw--d~~~~~~~~~~~~h~~~i~~l-~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      ..++|+|+++++++++. +.++||  |+.+++ ...+..|...+..+ +++++.-.+++++.+....+|
T Consensus       297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          297 RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            67899999999999998 999999  555555 56777777777766 444333344555666555555

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=4.7e-15  Score=137.99  Aligned_cols=253  Identities=11%  Similarity=0.124  Sum_probs=166.7

Q ss_pred             CCEEEEEECCCCCeEEEEe---------cCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC--
Q 011978          151 NWVLCIAWSADGKHLVSGS---------KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD--  219 (473)
Q Consensus       151 ~~v~~l~~s~dg~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d--  219 (473)
                      ..+..+.+  ||++++...         .++.|.+||+.+++...  +    ..+..+.|+|     ++.+++..+.+  
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--l----~~~~~~~~Sp-----Dg~~la~~~~~~~   81 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--I----ENATMPRISP-----DGKKIAFMRANEE   81 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--E----ESCEEEEECT-----TSSEEEEEEEETT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--c----ccCCCeEECC-----CCCEEEEEEeccC
Confidence            34667777  888887642         25679999998876432  2    3466677776     56677776653  


Q ss_pred             -C--cEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeec---------------------------CCeEEEEEC
Q 011978          220 -G--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQ---------------------------DCTIKVWET  268 (473)
Q Consensus       220 -g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~---------------------------d~~i~~wd~  268 (473)
                       +  .|.+||+.+++.......+ . +.++.|++|+. |+.++.                           ...|.+||+
T Consensus        82 ~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~  159 (347)
T 2gop_A           82 KKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT  159 (347)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred             CCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence             2  4888898887765544433 3 89999999984 555543                           257889999


Q ss_pred             CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC---------Cc
Q 011978          269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---------DF  339 (473)
Q Consensus       269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------d~  339 (473)
                      .+++.+..+.. . .+..+.++++. +                                    ++++..         ..
T Consensus       160 ~~~~~~~~l~~-~-~~~~~~~spdg-~------------------------------------~~~~~~~~~~~~~~~~~  200 (347)
T 2gop_A          160 ESEEVIEEFEK-P-RFSSGIWHRDK-I------------------------------------VVNVPHREIIPQYFKFW  200 (347)
T ss_dssp             TTTEEEEEEEE-E-TTCEEEEETTE-E------------------------------------EEEEECCCSSCCSSCCE
T ss_pred             CCCeEEeeecC-C-CcccccCCCCe-E------------------------------------EEEEecccccccccccc
Confidence            88876444443 2 45556666553 2                                    222222         12


Q ss_pred             eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC--------CcEEEEeCCCCceEEEeeCCccCEEE-EEE
Q 011978          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD--------KSIKLWNGTTGKFVAVFRGHVGPVYQ-ISW  410 (473)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d--------~~v~lwd~~~~~~~~~~~~h~~~v~~-v~~  410 (473)
                      .+.++|   ... ...+..+ ..+..+  +|||++|+.++.+        ..|.+||  +++......+|...+.. +.|
T Consensus       201 ~l~~~d---~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~  271 (347)
T 2gop_A          201 DIYIWE---DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIK  271 (347)
T ss_dssp             EEEEEE---TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEE
T ss_pred             cEEEeC---CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEE
Confidence            344444   221 2223333 344443  9999999888754        3688888  66665555666777886 999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE-Eecc
Q 011978          411 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL-KLWM  472 (473)
Q Consensus       411 sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i-~~w~  472 (473)
                      + |+ ++++++.|+.++|| +.+++....+ .+...|.+++|+|  ..+++++.++.. .||.
T Consensus       272 s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~  328 (347)
T 2gop_A          272 D-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLRELFT  328 (347)
T ss_dssp             T-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred             c-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence            9 88 99999999999999 8765554333 4467899999999  677777777654 6663

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=5.7e-15  Score=134.21  Aligned_cols=252  Identities=12%  Similarity=0.059  Sum_probs=159.9

Q ss_pred             cCCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          105 AGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      ..+.....+++|+|+|+ .++++..++.|..||..++  ...+..+...+.+++++|+|+++++...++.|.+||..+++
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred             ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence            34555678899999998 6778888999999999887  44555677789999999999987777677899999987665


Q ss_pred             cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEee-cCCe
Q 011978          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS-QDCT  262 (473)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~-~d~~  262 (473)
                      ....                          .... .+                 .....+..++++++|.++.+. .+++
T Consensus       102 ~~~~--------------------------~~~~-~~-----------------~~~~~~~~i~~d~~G~l~vtd~~~g~  137 (296)
T 3e5z_A          102 WESI--------------------------ADSF-EG-----------------KKLNSPNDVCLAPDGSLWFSDPTYGI  137 (296)
T ss_dssp             EEEE--------------------------ECEE-TT-----------------EECCCCCCEEECTTSCEEEEECSHHH
T ss_pred             EEEE--------------------------eecc-CC-----------------CCCCCCCCEEECCCCCEEEECCcccc
Confidence            2110                          0000 00                 001123446667776544321 1010


Q ss_pred             EEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (473)
Q Consensus       263 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  342 (473)
                      ...++....                                                             ......+.+.
T Consensus       138 ~~~~~~~~~-------------------------------------------------------------~~~~~~~~l~  156 (296)
T 3e5z_A          138 DKPEEGYGG-------------------------------------------------------------EMELPGRWVF  156 (296)
T ss_dssp             HCGGGSSCC-------------------------------------------------------------CCCSSSCEEE
T ss_pred             ccccccccc-------------------------------------------------------------cccCCCcEEE
Confidence            000000000                                                             0000011122


Q ss_pred             EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC-CCce---EEEeeCCccCEEEEEEecCCCEEE
Q 011978          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKF---VAVFRGHVGPVYQISWSADSRLLL  418 (473)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~~~~---~~~~~~h~~~v~~v~~sp~g~~l~  418 (473)
                      .++..   ........+....+.++|+|+|+.+++.+.++.|++||+. +++.   ...+..+.+.+.+++++++|++++
T Consensus       157 ~~~~~---g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v  233 (296)
T 3e5z_A          157 RLAPD---GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA  233 (296)
T ss_dssp             EECTT---SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE
T ss_pred             EECCC---CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE
Confidence            22211   0111122233456789999999998777778999999986 5554   334434555677899999999776


Q ss_pred             EEeCCCcEEEEECCCCceeecccccCCCEEEEEE-eeCCCEEEEEeCCCcEEe
Q 011978          419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW-SPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       419 s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~-s~d~~~l~s~~~D~~i~~  470 (473)
                      +.  ++.|.+||.. ++....+..+.. +.+++| +||++.|..++.++..++
T Consensus       234 ~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          234 SA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             EE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             Ec--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            66  7889999987 666666666666 889999 589999998888876554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=6.5e-15  Score=137.58  Aligned_cols=256  Identities=13%  Similarity=0.133  Sum_probs=163.1

Q ss_pred             EEEECCCCCeEEEEe----------CCCeEEEEeCCCCceeEEEcCC------CCCEEEEEECCCCCeEEEEec--CCeE
Q 011978          113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH------KNWVLCIAWSADGKHLVSGSK--AGEL  174 (473)
Q Consensus       113 ~~~~sp~~~~lat~s----------~d~~i~iwd~~~~~~~~~~~~~------~~~v~~l~~s~dg~~l~s~~~--dg~i  174 (473)
                      .++|+|||+++++++          .+++|.+||..+.+.+..+...      ......++|+|||++|+++..  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            799999999998886          3678999999988776655422      234567999999999998874  5899


Q ss_pred             EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-CeEEEEe------cCccccEEEEE
Q 011978          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICL------SGHTLAVTCVK  247 (473)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-~~~~~~~------~~h~~~v~~~~  247 (473)
                      .+||+.+++.....+.. .. ...+.+.|.    ....+++.+.||.+.+|+... ++.....      ..+...+ .+.
T Consensus       134 ~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~----~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~  206 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAA-AG-CWSVIPQPN----RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIA  206 (361)
T ss_dssp             EEEETTTTEEEEEEGGG-TT-EEEEEECTT----SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSC
T ss_pred             EEEECCCCcEEEEEecC-CC-cceeEEcCC----CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEE
Confidence            99999988754320111 11 111223332    225788899999999999865 4443111      1111111 111


Q ss_pred             ecCCC-eEEEeecCCeEEEEECCCCcee--eeeeccC------ceEE----EEEecccceeeeccccCCCcccCCHHHHH
Q 011978          248 WGGDG-VIYTGSQDCTIKVWETTQGKLI--RELKGHG------HWVN----SLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (473)
Q Consensus       248 ~~~~~-~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~------~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (473)
                      +.+++ .++..+.++.+.++|+..+...  ..+....      .+..    .++++++                      
T Consensus       207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d----------------------  264 (361)
T 2oiz_A          207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA----------------------  264 (361)
T ss_dssp             CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT----------------------
T ss_pred             ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC----------------------
Confidence            12333 4555567889999998654321  1111000      0000    0111111                      


Q ss_pred             HHHHhhhhcccCCCCceEEE-ec----------CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc
Q 011978          315 KAALERYNKIKGNAPERLVS-GS----------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS  383 (473)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~-~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~  383 (473)
                                    ..+++. ..          .+.++.+||....+. ...+..+.  +.+++|+|||++|++++. ++
T Consensus       265 --------------g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg~~l~v~n~-~~  326 (361)
T 2oiz_A          265 --------------SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQRNLMLTLDG-GN  326 (361)
T ss_dssp             --------------TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTTTEEEEECS-SC
T ss_pred             --------------CCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCCCEEEEeCC-Ce
Confidence                          122322 22          135899999866543 33444444  899999999999998887 99


Q ss_pred             EEEEeCCCC--ceEEEeeCCccCEEEEEEecCCC
Q 011978          384 IKLWNGTTG--KFVAVFRGHVGPVYQISWSADSR  415 (473)
Q Consensus       384 v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~g~  415 (473)
                      |.+||..++  +.+..+..+......++++|+|+
T Consensus       327 v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          327 VNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            999999999  98888766667788999999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.69  E-value=9.1e-15  Score=149.54  Aligned_cols=247  Identities=16%  Similarity=0.169  Sum_probs=163.0

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCC-----eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCe------
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDT-----TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE------  173 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~------  173 (473)
                      .+|...+..++|||||++||.++.++     .|++||+.+++.......+ ..+.+++|+|||+.|+.++.++.      
T Consensus       121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence            35666788999999999998775433     8999999998765432222 12567999999999999888765      


Q ss_pred             ----------EEEeeCCCCccccc---cCCCcCCcEEEEEeceeccCCCCceEEEeeC-----CCcEEEEECCC------
Q 011978          174 ----------LQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVSL------  229 (473)
Q Consensus       174 ----------i~iwd~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-----dg~i~iwd~~~------  229 (473)
                                |++|++.++.....   ....|...+..+.|+|     ++++++..+.     +..+.+||+.+      
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  274 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-----DGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-----TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-----CCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence                      99999988763211   1223455677777776     5566766554     56899999876      


Q ss_pred             Ce-EEEEecCccccEEEEEecCCC-eEEEeec-C---CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCC
Q 011978          230 RK-CVICLSGHTLAVTCVKWGGDG-VIYTGSQ-D---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT  303 (473)
Q Consensus       230 ~~-~~~~~~~h~~~v~~~~~~~~~-~l~s~~~-d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  303 (473)
                      +. ....+..+...+.. .|+++| .++..+. +   +.|.+||+.++...                             
T Consensus       275 ~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-----------------------------  324 (710)
T 2xdw_A          275 GILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-----------------------------  324 (710)
T ss_dssp             SSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-----------------------------
T ss_pred             CccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----------------------------
Confidence            42 23444445444443 244443 3333222 2   24566665443100                             


Q ss_pred             CcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc--cceeEEEECCCCcEEEEEECC
Q 011978          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFD  381 (473)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~lasgs~d  381 (473)
                                                                      ....+..|.  ..+..++|++++.++++...|
T Consensus       325 ------------------------------------------------~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          325 ------------------------------------------------KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             ------------------------------------------------GCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             ------------------------------------------------cceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence                                                            001111121  246678888888889999888


Q ss_pred             Cc--EEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE-e---CCCcEEEEECCCCc
Q 011978          382 KS--IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG-S---KDSTLKVWDIRTQK  435 (473)
Q Consensus       382 ~~--v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s---~Dg~i~iwd~~~~~  435 (473)
                      +.  |++||+.+|+.+..+..+.+.+..++++|++..++.. +   ..++|+.||+.+++
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            84  5667877788778888788889999999998765533 2   35789999998766

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.69  E-value=3.8e-15  Score=151.89  Aligned_cols=273  Identities=15%  Similarity=0.053  Sum_probs=172.9

Q ss_pred             CCCCeEEEEeCCC---eEEEE--eCCCCceeEEE------cCCCCCEEEEEECCCCCeEEE-----EecCCeEEEeeCCC
Q 011978          118 PDGRQLASGSGDT---TVRLW--DLNTQTPMFKC------TGHKNWVLCIAWSADGKHLVS-----GSKAGELQCWDPQT  181 (473)
Q Consensus       118 p~~~~lat~s~d~---~i~iw--d~~~~~~~~~~------~~~~~~v~~l~~s~dg~~l~s-----~~~dg~i~iwd~~~  181 (473)
                      |+|++++....++   .-.+|  +..++.....+      .+|...+.+++|||||++|+.     |+.+.+|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            6788877665432   33444  44444332222      245557899999999999983     44456899999999


Q ss_pred             Cccc-cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc-------------EEEEECCCCe----EEEEecCccccE
Q 011978          182 GKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD-------------ARIWDVSLRK----CVICLSGHTLAV  243 (473)
Q Consensus       182 ~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~-------------i~iwd~~~~~----~~~~~~~h~~~v  243 (473)
                      ++.. ...+....  ...+.|+|     ++..|+.++.|..             |++|++.++.    .+.....|...+
T Consensus       157 g~~~~~~~~~~~~--~~~~~wsp-----Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~  229 (695)
T 2bkl_A          157 GEWSKVDVIEGGK--YATPKWTP-----DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF  229 (695)
T ss_dssp             CCBCSSCCBSCCT--TCCCEECT-----TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE
T ss_pred             CCCcCCcccCccc--ccceEEec-----CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE
Confidence            8754 21121111  14567766     6678888888776             9999998765    444445566778


Q ss_pred             EEEEecCCCe-EEEeecCC----eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          244 TCVKWGGDGV-IYTGSQDC----TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       244 ~~~~~~~~~~-l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      .++.|++||. |+.++.++    .|.+|+..+++. ..+..+...+.....+.                           
T Consensus       230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~---------------------------  281 (695)
T 2bkl_A          230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHAWK---------------------------  281 (695)
T ss_dssp             EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEEET---------------------------
T ss_pred             EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEecC---------------------------
Confidence            8999999984 55555444    677776655543 33333222222222111                           


Q ss_pred             hhhhcccCCCCceEEEec---CCceEEEEeCCCCCC--CeeeecCc-ccceeEEEECCCCcEEEEEECCCcEEEEeCC-C
Q 011978          319 ERYNKIKGNAPERLVSGS---DDFTMFLWEPAVSKQ--PKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNGT-T  391 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~~~~~~-~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~  391 (473)
                                ...++.+.   .++.|..||+.....  .......+ ...+..++++ ++.++++...|+..+||... +
T Consensus       282 ----------g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~  350 (695)
T 2bkl_A          282 ----------DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK  350 (695)
T ss_dssp             ----------TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             ----------CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence                      11233332   357899999765432  12233333 4457888888 78889999999988888654 4


Q ss_pred             CceEEEeeCC-ccCEEEEEEecCCCEEEEE----eCCCcEEEEECCCCce
Q 011978          392 GKFVAVFRGH-VGPVYQISWSADSRLLLSG----SKDSTLKVWDIRTQKL  436 (473)
Q Consensus       392 ~~~~~~~~~h-~~~v~~v~~sp~g~~l~s~----s~Dg~i~iwd~~~~~~  436 (473)
                      ++....+..+ .+.+..++++|++..++..    ...++|++||+.+++.
T Consensus       351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            6656666655 6678889999999876632    2357899999987653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=2.3e-14  Score=146.63  Aligned_cols=268  Identities=10%  Similarity=0.030  Sum_probs=171.8

Q ss_pred             CCCCeEEEEeCC-C----eEEEEeCCCCceeEEE------cCCCCCEEEEEECCCCCeEEEEecCC-----eEEEeeCCC
Q 011978          118 PDGRQLASGSGD-T----TVRLWDLNTQTPMFKC------TGHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQT  181 (473)
Q Consensus       118 p~~~~lat~s~d-~----~i~iwd~~~~~~~~~~------~~~~~~v~~l~~s~dg~~l~s~~~dg-----~i~iwd~~~  181 (473)
                      |+|++++....+ +    .+.+.+..++.....+      .+|...+..++|||||++|+.+..++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            778877655422 1    3344444443332211      23444688999999999998776543     899999999


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc----------------EEEEECCCCe----EEEEecCccc
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD----------------ARIWDVSLRK----CVICLSGHTL  241 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~----------------i~iwd~~~~~----~~~~~~~h~~  241 (473)
                      ++........  ..+..+.|+|     ++..|+.++.++.                |++|++.++.    .+.....|..
T Consensus       161 g~~~~~~~~~--~~~~~~~wsp-----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~  233 (710)
T 2xdw_A          161 AKELPDVLER--VKFSCMAWTH-----DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK  233 (710)
T ss_dssp             TEEEEEEEEE--ECSCCEEECT-----TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             CCCCcccccC--cccceEEEEe-----CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence            8754322211  1244567766     6678888877765                9999998765    3333334566


Q ss_pred             cEEEEEecCCCe-EEEeec-----CCeEEEEECCC------Cc-eeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978          242 AVTCVKWGGDGV-IYTGSQ-----DCTIKVWETTQ------GK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (473)
Q Consensus       242 ~v~~~~~~~~~~-l~s~~~-----d~~i~~wd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (473)
                      .+..+.|++||. |+.++.     +..|++||+.+      +. ...                                 
T Consensus       234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---------------------------------  280 (710)
T 2xdw_A          234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV---------------------------------  280 (710)
T ss_dssp             CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE---------------------------------
T ss_pred             EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE---------------------------------
Confidence            678899999984 444433     56777887654      21 011                                 


Q ss_pred             CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC----CcE
Q 011978          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD----KSI  384 (473)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d----~~v  384 (473)
                                                                    .+..+...+.. .|+|+|+.|+..+.+    +.|
T Consensus       281 ----------------------------------------------~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l  313 (710)
T 2xdw_A          281 ----------------------------------------------KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL  313 (710)
T ss_dssp             ----------------------------------------------EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEE
T ss_pred             ----------------------------------------------EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEE
Confidence                                                          11111122222 477888887776653    359


Q ss_pred             EEEeCCCCc--eEEEeeCCcc--CEEEEEEecCCCEEEEEeCCCc--EEEEECCCCceeecccccCCCEEEEEEeeCCCE
Q 011978          385 KLWNGTTGK--FVAVFRGHVG--PVYQISWSADSRLLLSGSKDST--LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK  458 (473)
Q Consensus       385 ~lwd~~~~~--~~~~~~~h~~--~v~~v~~sp~g~~l~s~s~Dg~--i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~  458 (473)
                      .+||+.++.  ....+..|..  .+..++|++++.++++...|+.  |++||+.+++....+..+...+..++++|+++.
T Consensus       314 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~  393 (710)
T 2xdw_A          314 INIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTE  393 (710)
T ss_dssp             EEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSE
T ss_pred             EEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCE
Confidence            999998764  2334444543  6888999988888888888884  666787677766677777778889999999987


Q ss_pred             EEEE-e---CCCcEEecc
Q 011978          459 VASG-G---KDRVLKLWM  472 (473)
Q Consensus       459 l~s~-~---~D~~i~~w~  472 (473)
                      ++.. +   ..+++.+|+
T Consensus       394 l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          394 IFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEEEECSSCCCEEEEEE
T ss_pred             EEEEEeCCCCCCEEEEEE
Confidence            6633 2   335676664

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=3.3e-13  Score=124.69  Aligned_cols=241  Identities=11%  Similarity=0.078  Sum_probs=159.5

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC----CeEEEeeC
Q 011978          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDP  179 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d----g~i~iwd~  179 (473)
                      +.++...+.+++|+|+|+.++++..++.|.+||..+++.......+...+.+++|+|+|+++++...+    +.|.+||.
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            34566678899999999988888889999999998876544333456789999999999877777666    68999998


Q ss_pred             CCCccccccC-CCcCCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeEEEEecCccccEEEEEecCCC
Q 011978          180 QTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG  252 (473)
Q Consensus       180 ~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  252 (473)
                      .++....... ..+...+..+.+.|     ++..+++...      .+.|..+|..+++.... ..+...+..++|++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDS-----KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDE  193 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECT-----TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTS
T ss_pred             CCCEEEEEEccCccCCcccceEECC-----CCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCC
Confidence            8765431111 12345677777765     3445554432      24555566555443322 2233457789999987


Q ss_pred             e-EE-EeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          253 V-IY-TGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       253 ~-l~-s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      . ++ +.+.++.|.+||..+ +.....+..      .                                           
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~------~-------------------------------------------  224 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGA------T-------------------------------------------  224 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEE------E-------------------------------------------
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccc------e-------------------------------------------
Confidence            3 54 445678999999753 322211100      0                                           


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc------
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG------  403 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~------  403 (473)
                        +          ...          ..++ ..+..++++++|++.++...++.|.+||. +++.+..+..+..      
T Consensus       225 --~----------~~~----------~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~  280 (333)
T 2dg1_A          225 --I----------PYY----------FTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML  280 (333)
T ss_dssp             --E----------EEE----------CCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred             --E----------EEe----------cCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcccccc
Confidence              0          000          0011 23567899999998888888899999998 5666666654432      


Q ss_pred             CEEEEEEecCCCEEEEEeCC
Q 011978          404 PVYQISWSADSRLLLSGSKD  423 (473)
Q Consensus       404 ~v~~v~~sp~g~~l~s~s~D  423 (473)
                      .+.+++|+||++.|+.++.+
T Consensus       281 ~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          281 RSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             BCCEEEECTTSCEEEEEEEC
T ss_pred             CcceEEECCCCCEEEEEeCc
Confidence            68999999998777665554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=8.7e-13  Score=129.56  Aligned_cols=315  Identities=14%  Similarity=0.051  Sum_probs=198.2

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC--CCccccccCCCcCCc
Q 011978          118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ--TGKPSGNPLSGHKKW  195 (473)
Q Consensus       118 p~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~  195 (473)
                      |.+..+++...+++|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.|.+||+.  +++.......+.  .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--~  241 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--E  241 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--E
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC--C
Confidence            44455677778999999999998877766533 357799999999999999999999999995  655443322221  2


Q ss_pred             EEEEEeceeccCCCCceEEE-eeCCCcEEEEECCCCeEEEEecC----------ccc-cEEEEEecCCC--eEEEeecCC
Q 011978          196 ITGISWEPVHLNAPCRRFVS-ASKDGDARIWDVSLRKCVICLSG----------HTL-AVTCVKWGGDG--VIYTGSQDC  261 (473)
Q Consensus       196 v~~i~~~~~~~~~~~~~~~s-~s~dg~i~iwd~~~~~~~~~~~~----------h~~-~v~~~~~~~~~--~l~s~~~d~  261 (473)
                      ...+.+++... ++++++++ .-.++++.++|..+.+.+..+.-          |.. .+..+..++++  .++....+|
T Consensus       242 P~~ia~s~~~~-pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g  320 (567)
T 1qks_A          242 ARSIETSKMEG-WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  320 (567)
T ss_dssp             EEEEEECCSTT-CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CceeEEccccC-CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence            34566652000 14555554 45569999999999888776542          112 46667766654  355666779


Q ss_pred             eEEEEECCCCceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          262 TIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      .|.++|..+.+...... ........+.++++           ++                        ..+++...++.
T Consensus       321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pd-----------gr------------------------~~~va~~~sn~  365 (567)
T 1qks_A          321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGS-----------HR------------------------YFITAANARNK  365 (567)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTT-----------SC------------------------EEEEEEGGGTE
T ss_pred             eEEEEecCCCccceeeeeeccccccCceECCC-----------CC------------------------EEEEEeCCCCe
Confidence            99999987654222111 11111222233322           11                        13455667888


Q ss_pred             EEEEeCCCCCCCeeeec----CcccceeEEEECCCC-cEEEEEE-CCCcEEEEeCCC-------CceEEEeeCCccCEEE
Q 011978          341 MFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPDG-QWVASAS-FDKSIKLWNGTT-------GKFVAVFRGHVGPVYQ  407 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~----~~~~~v~~v~~sp~g-~~lasgs-~d~~v~lwd~~~-------~~~~~~~~~h~~~v~~  407 (473)
                      |.++|....+.......    .|...-.. -++|++ .+.+++. .++.|.++|..+       .+.+..+......-..
T Consensus       366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~  444 (567)
T 1qks_A          366 LVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLF  444 (567)
T ss_dssp             EEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCC
T ss_pred             EEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEE
Confidence            99999875543222222    13221111 268874 4445554 468999999887       5677777754333344


Q ss_pred             EEEecCCCEEEEEeC-------CCcEEEEECCCC-----cee-ecc--------cccCCCEEEEEEeeCCCEEEEEe---
Q 011978          408 ISWSADSRLLLSGSK-------DSTLKVWDIRTQ-----KLK-QDL--------PGHADEVFAVDWSPDGEKVASGG---  463 (473)
Q Consensus       408 v~~sp~g~~l~s~s~-------Dg~i~iwd~~~~-----~~~-~~~--------~~h~~~i~~l~~s~d~~~l~s~~---  463 (473)
                      +..+|++++|.+...       .++|.++|+.+.     ... ..+        ......+..+.|+|||+++..+.   
T Consensus       445 i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~  524 (567)
T 1qks_A          445 IKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG  524 (567)
T ss_dssp             EECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC
T ss_pred             EEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecC
Confidence            778999999888663       358999999876     211 222        11235788999999999876552   


Q ss_pred             --CCCcEEecc
Q 011978          464 --KDRVLKLWM  472 (473)
Q Consensus       464 --~D~~i~~w~  472 (473)
                        .++.|.+++
T Consensus       525 ~~~~~~i~v~D  535 (567)
T 1qks_A          525 KDQESALVVVD  535 (567)
T ss_dssp             TTSCCEEEEEE
T ss_pred             CCCCCcEEEEE
Confidence              257777653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.65  E-value=1.4e-13  Score=126.89  Aligned_cols=254  Identities=11%  Similarity=0.010  Sum_probs=171.0

Q ss_pred             CCCeEEEEeCCCCceeEEEc------CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEe
Q 011978          128 GDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW  201 (473)
Q Consensus       128 ~d~~i~iwd~~~~~~~~~~~------~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  201 (473)
                      .+++|.+||.++++....+.      ........+.+. +++..++...++.|.+||..+++..... . .......+.+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i-~-~~~~p~~i~~   91 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI-T-GFTSPRYIHF   91 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE-E-CCSSEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc-C-CCCCCcEEEE
Confidence            48899999999876433210      112345777774 3445555566799999999998865433 2 2345667776


Q ss_pred             ceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc-----ccEEEEEecCCCeEEEee--cCCeEEEEECCCCcee
Q 011978          202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS--QDCTIKVWETTQGKLI  274 (473)
Q Consensus       202 ~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~  274 (473)
                      .+     ++..+++...++.|.+||..+++....+....     .....+++ .++.++.+.  .++.|.++|..+++.+
T Consensus        92 ~~-----~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           92 LS-----DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             EE-----TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             eC-----CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence            55     33445555478999999999998776554222     13345555 355655554  4889999998887655


Q ss_pred             eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978          275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (473)
Q Consensus       275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  354 (473)
                      ..+...                                                                          
T Consensus       166 ~~i~~g--------------------------------------------------------------------------  171 (328)
T 3dsm_A          166 DELTIG--------------------------------------------------------------------------  171 (328)
T ss_dssp             EEEECS--------------------------------------------------------------------------
T ss_pred             EEEEcC--------------------------------------------------------------------------
Confidence            432100                                                                          


Q ss_pred             eecCcccceeEEEECCCCcEEEEEECC----------CcEEEEeCCCCceEEEeeCC-ccCEEEEEEecCCCEEEEEeCC
Q 011978          355 RMTGHQQLVNHVYFSPDGQWVASASFD----------KSIKLWNGTTGKFVAVFRGH-VGPVYQISWSADSRLLLSGSKD  423 (473)
Q Consensus       355 ~~~~~~~~v~~v~~sp~g~~lasgs~d----------~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~g~~l~s~s~D  423 (473)
                            .....++++|+|++++++..+          +.|.++|..+++....+... ......++|+||+++|+++.. 
T Consensus       172 ------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-  244 (328)
T 3dsm_A          172 ------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-  244 (328)
T ss_dssp             ------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-
T ss_pred             ------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-
Confidence                  012346788999877776554          78999999999887766532 236789999999998887754 


Q ss_pred             CcEEEEECCCCceee--cccccCCCEEEEEEee-CCCEEEEE----eCCCcEEecc
Q 011978          424 STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSP-DGEKVASG----GKDRVLKLWM  472 (473)
Q Consensus       424 g~i~iwd~~~~~~~~--~~~~h~~~i~~l~~s~-d~~~l~s~----~~D~~i~~w~  472 (473)
                       .|.+||..+++...  .+..+.....+++++| +++.+++.    ..++.|.+|+
T Consensus       245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             -SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             -EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence             89999998877532  1222245688999999 55555665    5678898885

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.65  E-value=3.2e-12  Score=115.94  Aligned_cols=273  Identities=12%  Similarity=0.092  Sum_probs=182.6

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  185 (473)
                      ....+.+++++++|+..++...++.|.+||.. ++.. .....+...+.++++.++|...++...++.|..||.. ++..
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~   95 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT   95 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence            44578899999999988877778999999987 4322 2233344678999999999877776668899999987 5543


Q ss_pred             cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE-EEecCccccEEEEEecCCCeEEEee-cCCeE
Q 011978          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-ICLSGHTLAVTCVKWGGDGVIYTGS-QDCTI  263 (473)
Q Consensus       186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~l~s~~-~d~~i  263 (473)
                      ..........+.++.+.+     ++..+++...++.|..+|.. ++.. ..+......+.++++++++.++.+. .++.|
T Consensus        96 ~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGL-----NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI  169 (300)
T ss_dssp             EEECSSTTCCEEEEEECS-----TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             EecCCCCCCCCccceECC-----CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence            222332335567776654     34556666667889999887 5443 2233344567888888877655554 35677


Q ss_pred             EEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEE
Q 011978          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (473)
Q Consensus       264 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  343 (473)
                      ..+|. +++... +                                                                  
T Consensus       170 ~~~~~-~g~~~~-~------------------------------------------------------------------  181 (300)
T 2qc5_A          170 GRITN-TGKLEE-Y------------------------------------------------------------------  181 (300)
T ss_dssp             EEECT-TCCEEE-E------------------------------------------------------------------
T ss_pred             EEECC-CCcEEE-e------------------------------------------------------------------
Confidence            77775 332211 0                                                                  


Q ss_pred             EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeC
Q 011978          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSK  422 (473)
Q Consensus       344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~  422 (473)
                       .          ...+...+..++++++|++.++....+.|.+||. +++.... +..+...+.+++++++|++.++...
T Consensus       182 -~----------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  249 (300)
T 2qc5_A          182 -P----------LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG  249 (300)
T ss_dssp             -E----------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             -e----------CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence             0          0011134678899999987777666778999998 5554432 3334567899999999997777666


Q ss_pred             CCcEEEEECCCCcee-ecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          423 DSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       423 Dg~i~iwd~~~~~~~-~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                      ++.|..||.. ++.. ..+......+.++.++++|+..++.. . .|..
T Consensus       250 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~  295 (300)
T 2qc5_A          250 ANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGK  295 (300)
T ss_dssp             TTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred             CCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence            7899999984 4332 23443445678899999998666655 4 4443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=2.5e-13  Score=121.50  Aligned_cols=233  Identities=12%  Similarity=0.030  Sum_probs=158.2

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCC-CCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEE
Q 011978          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT  197 (473)
Q Consensus       119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  197 (473)
                      .++.|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|+.|+  +.++.|+.||. +|+.+.....+....+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            46788999999999999999999988887765 4788999999999888  45788999999 77755433222223455


Q ss_pred             EEEeceeccCCCCceEEEeeC-CCcEEEEECCCCeEEEEec------CccccEEEEEecCCC-eEEEeecCCeEEEEECC
Q 011978          198 GISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLS------GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT  269 (473)
Q Consensus       198 ~i~~~~~~~~~~~~~~~s~s~-dg~i~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~  269 (473)
                      ++.+.     .++..+++.+. ++.+..+|. .++.+..+.      ++......+++.++| ++++...++.|..||..
T Consensus        81 ~~~~~-----~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           81 TARIL-----PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             EEEEC-----TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ccEEC-----CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            55443     35667777666 666776775 566554442      111223334455565 45666677888888866


Q ss_pred             CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978          270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (473)
Q Consensus       270 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  349 (473)
                       |+.+.++...                                                                     
T Consensus       155 -G~~~w~~~~~---------------------------------------------------------------------  164 (276)
T 3no2_A          155 -GQLLNSVKLS---------------------------------------------------------------------  164 (276)
T ss_dssp             -SCEEEEEECS---------------------------------------------------------------------
T ss_pred             -CCEEEEEECC---------------------------------------------------------------------
Confidence             6655443211                                                                     


Q ss_pred             CCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc------cCEEEEEEecCCCEEEEEeCC
Q 011978          350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV------GPVYQISWSADSRLLLSGSKD  423 (473)
Q Consensus       350 ~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~------~~v~~v~~sp~g~~l~s~s~D  423 (473)
                                 ..+.++.+.++|+++++++.++.|..+|..+|+.+..+..+.      ..+..++..++|+.+++.+..
T Consensus       165 -----------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g  233 (276)
T 3no2_A          165 -----------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG  233 (276)
T ss_dssp             -----------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred             -----------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence                       123346678899999998888899999999999988886432      237888899999988887421


Q ss_pred             --------CcEEEEEC-CCCceeeccc
Q 011978          424 --------STLKVWDI-RTQKLKQDLP  441 (473)
Q Consensus       424 --------g~i~iwd~-~~~~~~~~~~  441 (473)
                              +..+++.+ ..++.+-++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          234 HDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             TCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             ccccccccCCceEEEECCCCCEEEEec
Confidence                    23355555 3455544443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.62  E-value=3e-13  Score=120.91  Aligned_cols=240  Identities=7%  Similarity=-0.027  Sum_probs=159.1

Q ss_pred             cEEEEEECCCCCeEE-EEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          110 AVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       110 ~V~~~~~sp~~~~la-t~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      ...+++++++|+.++ +.+.++.|.+||..+.........+...+.+++++++|+.+++.. ++.|.+||......... 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~-  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL-  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC-
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee-
Confidence            678899999999777 446789999999766543221123335678899999998555555 88999999876543221 


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEe-ecCCeEEEEE
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG-SQDCTIKVWE  267 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~-~~d~~i~~wd  267 (473)
                      .......+.++.+.+     ++..+++...++.|.+|+..+.............+.++++++++.++.+ ..++.|.+||
T Consensus       103 ~~~~~~~p~~i~~~~-----~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDT-----QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE  177 (270)
T ss_dssp             CCCSCSSEEEEEECT-----TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ecCCcCCCcceEECC-----CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence            112224567777665     3456666677889999986655443322233345677888887765544 4567888887


Q ss_pred             CCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (473)
Q Consensus       268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  347 (473)
                      ...+.....                                                                       
T Consensus       178 ~~~~~~~~~-----------------------------------------------------------------------  186 (270)
T 1rwi_B          178 AESNNQVVL-----------------------------------------------------------------------  186 (270)
T ss_dssp             TTTCCEEEC-----------------------------------------------------------------------
T ss_pred             cCCCceEee-----------------------------------------------------------------------
Confidence            654321100                                                                       


Q ss_pred             CCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEE
Q 011978          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK  427 (473)
Q Consensus       348 ~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~  427 (473)
                              ...+...+..++++++|.++++...++.|.+||............+...+.+++++|+|+++++.+.++.|+
T Consensus       187 --------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~  258 (270)
T 1rwi_B          187 --------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  258 (270)
T ss_dssp             --------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             --------cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence                    000113467899999998888777788999999876544333233446789999999999888888899999


Q ss_pred             EEECCCCc
Q 011978          428 VWDIRTQK  435 (473)
Q Consensus       428 iwd~~~~~  435 (473)
                      ++++...+
T Consensus       259 ~~~~~~~~  266 (270)
T 1rwi_B          259 KLTSLEHH  266 (270)
T ss_dssp             EECCCGGG
T ss_pred             EEcCCCcc
Confidence            99987644

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.62  E-value=1.1e-14  Score=148.52  Aligned_cols=245  Identities=11%  Similarity=-0.024  Sum_probs=157.1

Q ss_pred             cCCcccEEEEEECCCCCeEEE-----EeCCCeEEEEeCCCCceeEEEcCCCCCE--EEEEECCCCCeEEEEecCCe----
Q 011978          105 AGHTEAVLSVAFSPDGRQLAS-----GSGDTTVRLWDLNTQTPMFKCTGHKNWV--LCIAWSADGKHLVSGSKAGE----  173 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat-----~s~d~~i~iwd~~~~~~~~~~~~~~~~v--~~l~~s~dg~~l~s~~~dg~----  173 (473)
                      .+|...+..++|||||++||.     |+.+.+|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..    
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence            467778999999999999984     3445789999999887541  1121222  67899999999999988766    


Q ss_pred             ---------EEEeeCCCCccc---cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC----cEEEEECCCCeEEEEec
Q 011978          174 ---------LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG----DARIWDVSLRKCVICLS  237 (473)
Q Consensus       174 ---------i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg----~i~iwd~~~~~~~~~~~  237 (473)
                               |++|++.++...   ......|...+.++.|+|     ++.+++..+.++    .|.+||..++.... +.
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-----DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~  268 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-----DGKYLFVYILRGWSENDVYWKRPGEKDFRL-LV  268 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-----TSCCEEEEEEETTTEEEEEEECTTCSSCEE-EE
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-----CCCEEEEEEeCCCCceEEEEEcCCCCceEE-ee
Confidence                     999999887632   112234556777888776     556777766555    67777765554332 33


Q ss_pred             CccccEEEEEecCCCeEEEee---cCCeEEEEECCCCce--eeeeec-c-CceEEEEEecccceeeeccccCCCcccCCH
Q 011978          238 GHTLAVTCVKWGGDGVIYTGS---QDCTIKVWETTQGKL--IRELKG-H-GHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (473)
Q Consensus       238 ~h~~~v~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~--~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (473)
                      .+...+....+..++.++.+.   .++.|.+||+.++..  ...+.. + ...+..+++..                   
T Consensus       269 ~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~-------------------  329 (695)
T 2bkl_A          269 KGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVG-------------------  329 (695)
T ss_dssp             ECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEET-------------------
T ss_pred             cCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEEC-------------------
Confidence            344444555554444333333   258899999877642  223322 2 33455444431                   


Q ss_pred             HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-ccceeEEEECCCCcEEEEEE----CCCcEE
Q 011978          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASAS----FDKSIK  385 (473)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~lasgs----~d~~v~  385 (473)
                                        ...+++...|+..++|...........+..+ ...+..++++|+++.++...    ..++|+
T Consensus       330 ------------------~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~  391 (695)
T 2bkl_A          330 ------------------GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIY  391 (695)
T ss_dssp             ------------------TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEE
T ss_pred             ------------------CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence                              2346777888888877654322222333333 55677888999998776433    246899


Q ss_pred             EEeCCCCce
Q 011978          386 LWNGTTGKF  394 (473)
Q Consensus       386 lwd~~~~~~  394 (473)
                      +||+.+++.
T Consensus       392 ~~d~~~g~~  400 (695)
T 2bkl_A          392 KTSVSTGKS  400 (695)
T ss_dssp             EEETTTCCE
T ss_pred             EEECCCCcE
Confidence            999988764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.62  E-value=6.7e-12  Score=123.30  Aligned_cols=293  Identities=15%  Similarity=0.075  Sum_probs=189.7

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCC--CCceeEEEcCCCCCEEEEEEC----CCCCeEEEEec-CCeEEEeeCCC
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWS----ADGKHLVSGSK-AGELQCWDPQT  181 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~--~~~~~~~~~~~~~~v~~l~~s----~dg~~l~s~~~-dg~i~iwd~~~  181 (473)
                      ..+..+.|+|||+++++++.|+.|.+||+.  +.+.+..+.... ....++|+    |||++++++.. ++++.++|..+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            356789999999999999999999999995  666666665433 35789999    69999988765 59999999888


Q ss_pred             CccccccCC-C--------cCC-cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecCccccEEEEEecC
Q 011978          182 GKPSGNPLS-G--------HKK-WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGG  250 (473)
Q Consensus       182 ~~~~~~~~~-~--------~~~-~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~  250 (473)
                      .+....... +        |.. .+..+..++.    ....++....+|.|.++|....+.+.. .........++.|++
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~----~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p  351 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY----RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG  351 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSS----SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCC----CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC
Confidence            765432211 1        112 4555554442    123556667789999999876532221 112223456788999


Q ss_pred             CCe-EE-EeecCCeEEEEECCCCceeeeeec-cCce----EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978          251 DGV-IY-TGSQDCTIKVWETTQGKLIRELKG-HGHW----VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (473)
Q Consensus       251 ~~~-l~-s~~~d~~i~~wd~~~~~~~~~~~~-~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (473)
                      ++. ++ ++..++.|.++|..+++.+..+.. ...+    -..+ +++++                              
T Consensus       352 dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~------------------------------  400 (567)
T 1qks_A          352 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTF------------------------------  400 (567)
T ss_dssp             TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTT------------------------------
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCC------------------------------
Confidence            884 44 455788999999999987665432 1100    0000 11110                              


Q ss_pred             ccCCCCceEEEe-cCCceEEEEeCCCCC------CCeeeecCcccceeEEEECCCCcEEEEEEC-------CCcEEEEeC
Q 011978          324 IKGNAPERLVSG-SDDFTMFLWEPAVSK------QPKTRMTGHQQLVNHVYFSPDGQWVASASF-------DKSIKLWNG  389 (473)
Q Consensus       324 ~~~~~~~~l~~~-~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-------d~~v~lwd~  389 (473)
                           ....+++ ..+++|.++|....+      .....+......-.-+.++|+++++.....       .++|.++|.
T Consensus       401 -----g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~  475 (567)
T 1qks_A          401 -----GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI  475 (567)
T ss_dssp             -----EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred             -----CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence                 1123343 246889999876522      112222222222234678999999888663       358999998


Q ss_pred             CCC-----c-eEEEee--------CCccCEEEEEEecCCCEEEEEe-----CCCcEEEEECCCCceeecccc
Q 011978          390 TTG-----K-FVAVFR--------GHVGPVYQISWSADSRLLLSGS-----KDSTLKVWDIRTQKLKQDLPG  442 (473)
Q Consensus       390 ~~~-----~-~~~~~~--------~h~~~v~~v~~sp~g~~l~s~s-----~Dg~i~iwd~~~~~~~~~~~~  442 (473)
                      .+.     . ....+.        .-...+..+.|+|+|+++..+.     .++.|.|+|..+++++..++.
T Consensus       476 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          476 KAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             GGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             CcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            866     2 112332        1134688999999999776653     378999999999998887764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.62  E-value=3e-13  Score=120.96  Aligned_cols=214  Identities=9%  Similarity=0.069  Sum_probs=157.3

Q ss_pred             CCceEEEeeCCCcEEEEECCCCeEEEEecCcc-ccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccC-ceEEE
Q 011978          209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG-HWVNS  286 (473)
Q Consensus       209 ~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~  286 (473)
                      +.+.+++++.++.|.+||..+++.+..+..+. ..+.++.+.++|.++. +.++.|..||. +|+.+.++..+. ..+.+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            34678999999999999999999999888765 4678889999986655 56788999998 899988887642 34555


Q ss_pred             EEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC-CceEEEEeCCCCCCCee-ee----cCcc
Q 011978          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKT-RM----TGHQ  360 (473)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~-~~----~~~~  360 (473)
                      +...++.                                    ..+++.+. ++.+..++.. ++.... .+    .++.
T Consensus        82 ~~~~~dG------------------------------------~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~  124 (276)
T 3no2_A           82 ARILPDG------------------------------------NALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH  124 (276)
T ss_dssp             EEECTTS------------------------------------CEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG
T ss_pred             cEECCCC------------------------------------CEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc
Confidence            5444432                                    23445444 5666666642 211111 11    1222


Q ss_pred             cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc
Q 011978          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL  440 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~  440 (473)
                      .....+++.++|+++++.+.++.|..||.. |+.+..+..+ ....++.+.++|+.+++++.++.|..+|..+++.+.++
T Consensus       125 ~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          125 AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             GSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             ccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence            345567889999999999999999999998 9999888765 34567788899999999988889999999988887665


Q ss_pred             cccC------CCEEEEEEeeCCCEEEEEe
Q 011978          441 PGHA------DEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       441 ~~h~------~~i~~l~~s~d~~~l~s~~  463 (473)
                      ..+.      ..+..+...++|+.+++..
T Consensus       203 ~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          203 NANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             cCCCCCCccccccccceEcCCCCEEEEec
Confidence            4321      2367888889998888773

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=1.2e-12  Score=116.86  Aligned_cols=235  Identities=9%  Similarity=0.020  Sum_probs=154.6

Q ss_pred             cEEEEEeceeccCCCCceEE-EeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCce
Q 011978          195 WITGISWEPVHLNAPCRRFV-SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL  273 (473)
Q Consensus       195 ~v~~i~~~~~~~~~~~~~~~-s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  273 (473)
                      ...++.+.+     ++..++ +.+.++.|..||..+.........+...+.++++++++.++.+..++.|..||......
T Consensus        25 ~p~~i~~~~-----~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDS-----AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECT-----TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             CccceEECC-----CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence            345555544     344555 44678899999876654333223334567788999888766665588999999765433


Q ss_pred             eeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC
Q 011978          274 IRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP  352 (473)
Q Consensus       274 ~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  352 (473)
                       ..+. ........+++.++                                    ...+++...++.+..|+...... 
T Consensus       100 -~~~~~~~~~~p~~i~~~~~------------------------------------g~l~v~~~~~~~i~~~~~~~~~~-  141 (270)
T 1rwi_B          100 -TVLPFDGLNYPEGLAVDTQ------------------------------------GAVYVADRGNNRVVKLAAGSKTQ-  141 (270)
T ss_dssp             -EECCCCSCSSEEEEEECTT------------------------------------CCEEEEEGGGTEEEEECTTCCSC-
T ss_pred             -eeeecCCcCCCcceEECCC------------------------------------CCEEEEECCCCEEEEEECCCcee-
Confidence             2222 11133445544432                                    12345556677888887533221 


Q ss_pred             eeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       353 ~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      ..........+.+++++|+|+++++...++.|.+||............+...+.+++++++|+++++...++.|.+||..
T Consensus       142 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          142 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            11112223457889999999988877778899999988766544433444678999999999887777778899999987


Q ss_pred             CCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          433 TQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       433 ~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ..........+...+.+++++++|+.+++...+++|+++.
T Consensus       222 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          222 STTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             CSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             CCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            6544333333345789999999999889999999999875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.59  E-value=2e-12  Score=119.27  Aligned_cols=300  Identities=14%  Similarity=0.048  Sum_probs=187.9

Q ss_pred             EEECCCCCeEEEEeC-----CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEee
Q 011978          114 VAFSPDGRQLASGSG-----DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWD  178 (473)
Q Consensus       114 ~~~sp~~~~lat~s~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd  178 (473)
                      ....|++++++....     ++.|.+.|..+.+.+..+.....+ . ++++|||++++.+.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            345789998887765     689999999999887777644444 4 99999999998775          367899999


Q ss_pred             CCCCccccccCCCc------CCcEEEEEeceeccCCCCceEEEeeC--CCcEEEEECCCCeEEEEecCccccEEEEEecC
Q 011978          179 PQTGKPSGNPLSGH------KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (473)
Q Consensus       179 ~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  250 (473)
                      ..+.+.......+.      ......+.+     +++++++..+..  ++.|.++|+.+++.+..+.-..  +..+.-..
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~-----spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~~~~~P~g  188 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSL-----TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--CYHIFPTA  188 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEE-----CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEE-----cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--cceeecCC
Confidence            99887544321110      001112333     346677666653  6899999999999887764221  11111112


Q ss_pred             CCeEEEeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          251 DGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       251 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      ...+++.+.||++.+.++.+ ++.......        .+.+...          ..+..+            ... ...
T Consensus       189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~--------~~~~~~~----------~~~~~~------------~~~-~~d  237 (386)
T 3sjl_D          189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTE--------VFHPEDE----------FLINHP------------AYS-QKA  237 (386)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECC--------CCSCTTS----------CBCSCC------------EEE-TTT
T ss_pred             CceeEEECCCCCEEEEECCCCCeEEEeecc--------eeccccc----------cccccc------------eeE-cCC
Confidence            23567888899999999876 554221100        0000000          000000            000 012


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCe-eee---------cC-cccceeEEEECCCCcEEEEEEC----------CCcEEEEe
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPK-TRM---------TG-HQQLVNHVYFSPDGQWVASASF----------DKSIKLWN  388 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~-~~~---------~~-~~~~v~~v~~sp~g~~lasgs~----------d~~v~lwd  388 (473)
                      .+++..+.++++++.|........ ...         .+ .......++++|+++.+.....          .+.|.+.|
T Consensus       238 G~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD  317 (386)
T 3sjl_D          238 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  317 (386)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence            244456668899999975432111 111         00 1223445788999888877643          24799999


Q ss_pred             CCCCceEEEeeCCccCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceeecccccCCCEEEEEEeeC
Q 011978          389 GTTGKFVAVFRGHVGPVYQISWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD  455 (473)
Q Consensus       389 ~~~~~~~~~~~~h~~~v~~v~~sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d  455 (473)
                      ..+++.+..+..- ..+.+++++||++ +|++.. .++.|.++|..+++.+.++..- ..-+.+.+++|
T Consensus       318 ~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          318 AKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             TTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             CCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            9999998887642 3678999999997 666654 5899999999999988776532 22345666766

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.58  E-value=3.9e-11  Score=112.08  Aligned_cols=282  Identities=13%  Similarity=0.018  Sum_probs=174.0

Q ss_pred             EECCCCCeEEEEeC--CC---eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEeeC
Q 011978          115 AFSPDGRQLASGSG--DT---TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDP  179 (473)
Q Consensus       115 ~~sp~~~~lat~s~--d~---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd~  179 (473)
                      ...|++++++.+..  ..   +|.+||..+++.+..+.....+  .++++|||++|+.+.          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34578887776653  33   8899999998877666543343  899999999999875          3678999999


Q ss_pred             CCCccccccCCC---c---CCcEEEEEeceeccCCCCceEEEeeC--CCcEEEEECCCCeEEEE-ecCccccEEEEEecC
Q 011978          180 QTGKPSGNPLSG---H---KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGG  250 (473)
Q Consensus       180 ~~~~~~~~~~~~---~---~~~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~  250 (473)
                      .+.+.......+   +   ......+.++|     ++++++.+..  +..|.++| .+++.+.. +.-. .   |+.+.+
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-----DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~  174 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTP-----NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHP  174 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECC-----CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEe
Confidence            876654322111   0   01123455554     6677777663  57899999 99887766 4321 1   223333


Q ss_pred             C--CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978          251 D--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (473)
Q Consensus       251 ~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
                      +  ..+++.+.||.+.++|. +++.........  +.   ..+........+.                         ..
T Consensus       175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~--~~---~~~~p~~~~~~~~-------------------------~~  223 (373)
T 2mad_H          175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA--ML---TAAQNLLTQPAQA-------------------------NK  223 (373)
T ss_pred             CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc--cc---cCCcceeecceeE-------------------------ec
Confidence            3  35667788999999999 776653221000  00   0000000000000                         00


Q ss_pred             CceEEEecCCceEEEEeCCCCCCCe-eee----------cCcccceeEEEECCCCcEEEEEEC----------CCcEEEE
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPK-TRM----------TGHQQLVNHVYFSPDGQWVASASF----------DKSIKLW  387 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~-~~~----------~~~~~~v~~v~~sp~g~~lasgs~----------d~~v~lw  387 (473)
                      ...++..+..+.+.+.|........ ..+          .........++++|+++.+..+..          ++.|.++
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence            1122222355677777764321110 000          001122345789999988777643          3579999


Q ss_pred             eCCCCceEEEeeCCccCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceeecc
Q 011978          388 NGTTGKFVAVFRGHVGPVYQISWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDL  440 (473)
Q Consensus       388 d~~~~~~~~~~~~h~~~v~~v~~sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~  440 (473)
                      |..+++.+..+... ....+++|+|||+ +++++. .++.|.+||+.+++...++
T Consensus       304 D~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          304 TGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            99999998888532 3578999999999 777777 5899999999999888773

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=2.5e-12  Score=118.39  Aligned_cols=243  Identities=12%  Similarity=0.023  Sum_probs=159.3

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      .....+.+. +++..++...++.|.+||..+++.+..+.. ......++++++++..++...++.|.+||..+++.....
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            445667774 344455556689999999999988776643 456889999999844444448999999999988754322


Q ss_pred             CCCc----CCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeec-C--
Q 011978          189 LSGH----KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ-D--  260 (473)
Q Consensus       189 ~~~~----~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~-d--  260 (473)
                      ..+.    ......+.+ .     ....+++.. .++.|.++|..+++.+..+... .....+.++++|.++.++. +  
T Consensus       122 ~~g~~~~~~~~p~~i~~-~-----~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~  194 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ-Y-----GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYE  194 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE-E-----TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCT
T ss_pred             EcCCccccCCCcceEEE-E-----CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCcc
Confidence            1111    112333443 1     223344433 4889999999999877766432 2345677788886554443 2  


Q ss_pred             --------CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          261 --------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       261 --------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                              +.|.++|..+++....+..                                                     
T Consensus       195 ~~~~~~~~~~v~~id~~t~~v~~~~~~-----------------------------------------------------  221 (328)
T 3dsm_A          195 GSPYGYEAPSLYRIDAETFTVEKQFKF-----------------------------------------------------  221 (328)
T ss_dssp             TCSSCBCCCEEEEEETTTTEEEEEEEC-----------------------------------------------------
T ss_pred             CCccccCCceEEEEECCCCeEEEEEec-----------------------------------------------------
Confidence                    5788888766654332110                                                     


Q ss_pred             EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE--EeeCCccCEEEEEE
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA--VFRGHVGPVYQISW  410 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~--~~~~h~~~v~~v~~  410 (473)
                                    .           .......++|+|++++|..+..  .|.+||..+++...  .+..+......+++
T Consensus       222 --------------~-----------~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v  274 (328)
T 3dsm_A          222 --------------K-----------LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTV  274 (328)
T ss_dssp             --------------C-----------TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEE
T ss_pred             --------------C-----------CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEE
Confidence                          0           0123577999999998888754  89999998887532  12222456889999


Q ss_pred             ec-CCCEEEEE----eCCCcEEEEECCCCceeeccc
Q 011978          411 SA-DSRLLLSG----SKDSTLKVWDIRTQKLKQDLP  441 (473)
Q Consensus       411 sp-~g~~l~s~----s~Dg~i~iwd~~~~~~~~~~~  441 (473)
                      +| ++++.++.    ..++.|.+||.. ++.+.++.
T Consensus       275 dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          275 NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            99 55566665    568899999998 77766654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=4.9e-11  Score=108.02  Aligned_cols=238  Identities=12%  Similarity=0.085  Sum_probs=161.7

Q ss_pred             CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (473)
Q Consensus       148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~  227 (473)
                      .+...+.+++++++|+.+++...++.|.+||.. ++........+...+.++.+.+     ++..+++...++.|..||.
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-----DGEVWFTENAANKIGRITK   85 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-----CCCEEEeCCCCCeEEEECC
Confidence            345678999999999877776668999999988 5543322233445677777654     3455666566788999997


Q ss_pred             CCCeEEEEecCccccEEEEEecCCCeEEEe-ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcc
Q 011978          228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (473)
Q Consensus       228 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  306 (473)
                      ........+......+.++.+++++.++.+ ..++.|..||. +++....                              
T Consensus        86 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~------------------------------  134 (299)
T 2z2n_A           86 KGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY------------------------------  134 (299)
T ss_dssp             TSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE------------------------------
T ss_pred             CCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe------------------------------
Confidence            633222223334456788888888765554 45677888876 4322110                              


Q ss_pred             cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEE
Q 011978          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (473)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l  386 (473)
                                                            .          ...+...+..++++++|++.++...++.|..
T Consensus       135 --------------------------------------~----------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  166 (299)
T 2z2n_A          135 --------------------------------------E----------LPNKGSYPSFITLGSDNALWFTENQNNAIGR  166 (299)
T ss_dssp             --------------------------------------E----------CSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             --------------------------------------c----------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence                                                  0          0001124678899999988887777789999


Q ss_pred             EeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee-cccccCCCEEEEEEeeCCCEEEEEeC
Q 011978          387 WNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ-DLPGHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       387 wd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      ||. +++.... ...+...+.+++++++|++.++...++.|.+||. +++... .+..+...+.++.++++|+.+++...
T Consensus       167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  244 (299)
T 2z2n_A          167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG  244 (299)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence            998 6665443 3334556889999999998777767889999999 655432 23445567899999999997777667


Q ss_pred             CCcEEecc
Q 011978          465 DRVLKLWM  472 (473)
Q Consensus       465 D~~i~~w~  472 (473)
                      ++.|..|.
T Consensus       245 ~~~i~~~d  252 (299)
T 2z2n_A          245 ANKIGRLT  252 (299)
T ss_dssp             TTEEEEEE
T ss_pred             CceEEEEC
Confidence            77777764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.54  E-value=7.6e-13  Score=135.91  Aligned_cols=273  Identities=14%  Similarity=0.061  Sum_probs=165.3

Q ss_pred             CCCCeEEEEeCCC---eEEEEe--CC---CCceeEEE------cCCCCCEEEEEECCCCCeEEEEecC-----CeEEEee
Q 011978          118 PDGRQLASGSGDT---TVRLWD--LN---TQTPMFKC------TGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWD  178 (473)
Q Consensus       118 p~~~~lat~s~d~---~i~iwd--~~---~~~~~~~~------~~~~~~v~~l~~s~dg~~l~s~~~d-----g~i~iwd  178 (473)
                      |+|++++....++   .-.+|-  ..   ++.....+      .+|...+..++|||||++|+.+..+     .+|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            8999888665433   245554  33   33322211      2333468899999999999877654     3699999


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc--------------EEEEECCCCe----EEEEecCcc
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD--------------ARIWDVSLRK----CVICLSGHT  240 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~--------------i~iwd~~~~~----~~~~~~~h~  240 (473)
                      +.+++......  +...+..+.|+|     + ..|+.++.++.              |++|++.++.    .+.....+.
T Consensus       196 l~tg~~~~~~~--~~~~~~~~~wsp-----D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~  267 (741)
T 1yr2_A          196 VADGKPLADEL--KWVKFSGLAWLG-----N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP  267 (741)
T ss_dssp             TTTCCEEEEEE--EEEESCCCEEST-----T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred             CCCCCCCCccC--CCceeccEEEEC-----C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC
Confidence            99887532111  111113455655     5 67777766554              8899987654    333334444


Q ss_pred             ccEEEEEecCCC-eEEEeecC-----CeEEEEECCCC--ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978          241 LAVTCVKWGGDG-VIYTGSQD-----CTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (473)
Q Consensus       241 ~~v~~~~~~~~~-~l~s~~~d-----~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (473)
                      ..+..+.|++|| .|+..+.+     ..|++||+.++  +....+..+...+..... ++                    
T Consensus       268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~d--------------------  326 (741)
T 1yr2_A          268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD-GV--------------------  326 (741)
T ss_dssp             TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE-EE--------------------
T ss_pred             eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe-cc--------------------
Confidence            468899999998 35554433     48999998776  313334333222221111 11                    


Q ss_pred             HHHHHHhhhhcccCCCCceEEEecC----CceEEEEeCCCCC-CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEE
Q 011978          313 MKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (473)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lw  387 (473)
                                      .+.++..+.    ++.|.+||..... ........+...+..++++ ++.++++...|+..+||
T Consensus       327 ----------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  389 (741)
T 1yr2_A          327 ----------------GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVL  389 (741)
T ss_dssp             ----------------TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred             ----------------CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence                            122333332    4568889876532 2233344555567777887 67788888899987777


Q ss_pred             eCC-CCceEEEeeC-CccCEEEEEEecCCCEEEEE----eCCCcEEEEECCCCce
Q 011978          388 NGT-TGKFVAVFRG-HVGPVYQISWSADSRLLLSG----SKDSTLKVWDIRTQKL  436 (473)
Q Consensus       388 d~~-~~~~~~~~~~-h~~~v~~v~~sp~g~~l~s~----s~Dg~i~iwd~~~~~~  436 (473)
                      ... +++....+.. +.+.+..++++|++..|+..    ...++|++||+.+++.
T Consensus       390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            544 4555666654 36678999999998866522    2357899999987653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.52  E-value=2.2e-11  Score=111.29  Aligned_cols=242  Identities=10%  Similarity=0.140  Sum_probs=157.0

Q ss_pred             ccEEEEEECCCCCeEEE-------EeCCCeEEEEeCCCCceeEEEc----CCCCCEEEEEECCC-CCeEEEEecCCeEEE
Q 011978          109 EAVLSVAFSPDGRQLAS-------GSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSAD-GKHLVSGSKAGELQC  176 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat-------~s~d~~i~iwd~~~~~~~~~~~----~~~~~v~~l~~s~d-g~~l~s~~~dg~i~i  176 (473)
                      ....+++|+++|..+++       +..++.|.+||..+++......    ++...+.+++++++ |+ |..++..+.|.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEE
Confidence            45678999999988877       5778999999987765432211    24467899999999 65 444444558999


Q ss_pred             eeCCCCccccc-cC--CC-cCCcEEEEEeceeccCCCCceEEEeeCC---------------CcEEEEECCCCeEEEEec
Q 011978          177 WDPQTGKPSGN-PL--SG-HKKWITGISWEPVHLNAPCRRFVSASKD---------------GDARIWDVSLRKCVICLS  237 (473)
Q Consensus       177 wd~~~~~~~~~-~~--~~-~~~~v~~i~~~~~~~~~~~~~~~s~s~d---------------g~i~iwd~~~~~~~~~~~  237 (473)
                      ||.+ ++.... ..  .+ ....+.++.+.+     ++..+++...+               +.|..||.. ++.... .
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~  168 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-----EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-D  168 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECT-----TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-E
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECC-----CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-c
Confidence            9987 654321 11  11 123456666654     34455555444               456666655 443322 2


Q ss_pred             CccccEEEEEec----CCC-eEEEe-ecCCeEEEEECC-CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978          238 GHTLAVTCVKWG----GDG-VIYTG-SQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (473)
Q Consensus       238 ~h~~~v~~~~~~----~~~-~l~s~-~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (473)
                      .+......++++    +++ .++.+ ..++.|.+||.. +++....                                  
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~----------------------------------  214 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK----------------------------------  214 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE----------------------------------
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc----------------------------------
Confidence            233345778888    887 45444 567889988864 2221100                                  


Q ss_pred             HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc-cceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (473)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~v~~sp~g~~lasgs~d~~v~lwd~  389 (473)
                                                     ..+.         .+.++. ..+..++++++|++.++...++.|.+||.
T Consensus       215 -------------------------------~~~~---------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          215 -------------------------------KVWG---------HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             -------------------------------EEEE---------ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             -------------------------------eEEE---------ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence                                           0000         000111 23567899999999888888899999999


Q ss_pred             CCCceEEEeeCCccCEEEEEEecCCCEEE-EEeCCCcEEEEECCC
Q 011978          390 TTGKFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRT  433 (473)
Q Consensus       390 ~~~~~~~~~~~h~~~v~~v~~sp~g~~l~-s~s~Dg~i~iwd~~~  433 (473)
                      .+++.+..+..+...+.+++|+|+|+.|. +...++.|..|++..
T Consensus       255 ~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            87877777777777899999999999554 445568899999865

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=3.4e-11  Score=110.03  Aligned_cols=232  Identities=12%  Similarity=0.126  Sum_probs=150.5

Q ss_pred             EEEEEeceeccCCCCceEEE-------eeCCCcEEEEECCCCeEEEEec----CccccEEEEEecCC-CeEEEeecCCeE
Q 011978          196 ITGISWEPVHLNAPCRRFVS-------ASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGD-GVIYTGSQDCTI  263 (473)
Q Consensus       196 v~~i~~~~~~~~~~~~~~~s-------~s~dg~i~iwd~~~~~~~~~~~----~h~~~v~~~~~~~~-~~l~s~~~d~~i  263 (473)
                      ..++.|.+     ++..+++       +..++.|..||..+++......    ++...+.++.++++ +.++.++..+.|
T Consensus        20 ~~~~~~~~-----~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l   94 (314)
T 1pjx_A           20 AEGPVFDK-----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             CEEEEECT-----TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             ccCceECC-----CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCE
Confidence            34555543     3345555       5778899999987776543322    25567889999998 887777766689


Q ss_pred             EEEECCCCceeee-eec----cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          264 KVWETTQGKLIRE-LKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       264 ~~wd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .+||.. ++.... ...    ....+..+++.++..                                    .+++...+
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~------------------------------------l~v~~~~~  137 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN------------------------------------LWITAPAG  137 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC------------------------------------EEEEECBC
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC------------------------------------EEEEecCc
Confidence            999987 665332 211    112244444443321                                    22332222


Q ss_pred             ---------------ceEEEEeCCCCCCCeeeecCcccceeEEEEC----CCCcEEEEE-ECCCcEEEEeCC-CCc----
Q 011978          339 ---------------FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS----PDGQWVASA-SFDKSIKLWNGT-TGK----  393 (473)
Q Consensus       339 ---------------~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s----p~g~~lasg-s~d~~v~lwd~~-~~~----  393 (473)
                                     +.+..++.. . . ......+......++++    |+++.|..+ ..++.|.+||.. +++    
T Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~~-g-~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~  214 (314)
T 1pjx_A          138 EVAPADYTRSMQEKFGSIYCFTTD-G-Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK  214 (314)
T ss_dssp             BCTTSCCCBTTSSSCEEEEEECTT-S-C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred             ccccccccccccCCCCeEEEECCC-C-C-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence                           456666653 1 1 22222233456789999    999766555 467899999976 454    


Q ss_pred             -eEEEeeCCc-cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEE-EEEeCCCcEEe
Q 011978          394 -FVAVFRGHV-GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKL  470 (473)
Q Consensus       394 -~~~~~~~h~-~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~~  470 (473)
                       ....+.++. ..+..++++++|+++++...++.|.+||..+++....+..+...+.+++|+|||+.| ++...++.|..
T Consensus       215 ~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~  294 (314)
T 1pjx_A          215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEE
Confidence             223344443 568899999999988888888999999998776666665566789999999999955 45555677766


Q ss_pred             cc
Q 011978          471 WM  472 (473)
Q Consensus       471 w~  472 (473)
                      |.
T Consensus       295 ~~  296 (314)
T 1pjx_A          295 FE  296 (314)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.47  E-value=5.5e-12  Score=127.49  Aligned_cols=312  Identities=14%  Similarity=0.136  Sum_probs=188.2

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC----------E-EEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~----------v-~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      +..|+.++.++.|.-+|..+++.+.........          + ..++.  ++..|+.++.|+.|..+|..+|+.....
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            667778888999999999999988876533210          0 11222  3568889999999999999999865332


Q ss_pred             CCC-cCCcEEEEEeceeccCCCCceEEEee------CCCcEEEEECCCCeEEEEecC--cc-------------------
Q 011978          189 LSG-HKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSG--HT-------------------  240 (473)
Q Consensus       189 ~~~-~~~~v~~i~~~~~~~~~~~~~~~s~s------~dg~i~iwd~~~~~~~~~~~~--h~-------------------  240 (473)
                      ... +......+...|...   ...++.++      .++.|..||..+++.+..+..  +.                   
T Consensus       148 ~~~~~~~~~~~~~~sP~v~---~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  224 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVV---NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG  224 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred             cCcCCCCCCccccCCcEEE---CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence            211 111101111112111   23444443      368999999999998876531  00                   


Q ss_pred             ----------ccEEEEEecCC-CeEEEeecCC-------------------eEEEEECCCCceeeeeeccCceEEEEEec
Q 011978          241 ----------LAVTCVKWGGD-GVIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGHWVNSLALS  290 (473)
Q Consensus       241 ----------~~v~~~~~~~~-~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  290 (473)
                                ..-..++++++ +.++.+..++                   .|..+|..+|+.+..++...+........
T Consensus       225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~  304 (689)
T 1yiq_A          225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT  304 (689)
T ss_dssp             STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred             ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence                      00113566654 5777777665                   39999999999887765421111000000


Q ss_pred             ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-----------
Q 011978          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-----------  359 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------  359 (473)
                      ....+....                        ..+.....++.++.+|.++++|...++........+           
T Consensus       305 ~~~~l~d~~------------------------~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          305 QHMILAELP------------------------IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             SCEEEEEEE------------------------ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             CCcEEEeec------------------------cCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            000000000                        000111257788899999999976654321110000           


Q ss_pred             ----------------c-----------cceeEEEECCCCcEEEEEEC--------------------------------
Q 011978          360 ----------------Q-----------QLVNHVYFSPDGQWVASASF--------------------------------  380 (473)
Q Consensus       360 ----------------~-----------~~v~~v~~sp~g~~lasgs~--------------------------------  380 (473)
                                      .           ..-..++|+|+..++++...                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                            0           00123789998888777632                                


Q ss_pred             -------------CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCC-C
Q 011978          381 -------------DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD-E  446 (473)
Q Consensus       381 -------------d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~-~  446 (473)
                                   +|.|+.||+.+|+.+-.++.+. ++..-.++..+.+++.++.||.++.||.++++.+.++..... .
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~  519 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM  519 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             cccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc
Confidence                         3779999999999887776543 333345667788999999999999999999998866543322 2


Q ss_pred             EEEEEEeeCCCEEEE
Q 011978          447 VFAVDWSPDGEKVAS  461 (473)
Q Consensus       447 i~~l~~s~d~~~l~s  461 (473)
                      ..-+.|+.||+.++.
T Consensus       520 ~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          520 AAPVTYSVDGEQYVT  534 (689)
T ss_dssp             SCCEEEEETTEEEEE
T ss_pred             cCceEEEECCEEEEE
Confidence            234677889885543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.45  E-value=6e-11  Score=111.45  Aligned_cols=282  Identities=15%  Similarity=0.076  Sum_probs=173.7

Q ss_pred             CCCCeEEEEeC-C----CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEeeCCCC
Q 011978          118 PDGRQLASGSG-D----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG  182 (473)
Q Consensus       118 p~~~~lat~s~-d----~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd~~~~  182 (473)
                      |++++++.+.. +    +.|.++|..+.+.+..+..-..+  .++++|||++|+.+.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            56777666544 3    79999999999888777644455  799999999998876          3678999999988


Q ss_pred             ccccccCCC-c-----CCcEEEEEeceeccCCCCceEEEeeC--CCcEEEEECCCCeEEEEecCccccEEEEEecCCCeE
Q 011978          183 KPSGNPLSG-H-----KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI  254 (473)
Q Consensus       183 ~~~~~~~~~-~-----~~~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l  254 (473)
                      +.......+ .     ......+.     +++++++++.+..  ++.|.+.|+.+++.+..+.-...  ..+.-.....+
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~-----~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~  232 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNA-----LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVF  232 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSE-----ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred             cEEEEEECCCccccccCCCcceEE-----EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEE
Confidence            754332111 0     00111222     3446677777653  57899999999988776643111  11111122356


Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      ++.+.||++.+.+..+++...... +   +  +............+                         ......++.
T Consensus       233 v~~~~dG~~~~V~~~~~~v~~~~~-~---~--~~v~~~p~~~~~~~-------------------------~~dg~~~~~  281 (426)
T 3c75_H          233 YMNCRDGSLARVDFADGETKVTNT-E---V--FHTEDELLINHPAF-------------------------SLRSGRLVW  281 (426)
T ss_dssp             EEEETTSSEEEEECCTTCCEEEEC-C---C--CSCTTSCBCSCCEE-------------------------CTTTCEEEE
T ss_pred             EEEcCCCCEEEEECCCCcEEEEee-e---e--eccCCCceeeEeee-------------------------cCCCCEEEE
Confidence            677788888888875555432110 0   0  00000000000000                         011234444


Q ss_pred             ecCCceEEEEeCCCCCCCe---eeec--------CcccceeEEEECCCCcEEEEEEC----------CCcEEEEeCCCCc
Q 011978          335 GSDDFTMFLWEPAVSKQPK---TRMT--------GHQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGK  393 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~---~~~~--------~~~~~v~~v~~sp~g~~lasgs~----------d~~v~lwd~~~~~  393 (473)
                      .+..+.+.+.|........   ..+.        ........++++|+++.+.....          ++.|.++|..+.+
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence            4566788888864322100   0000        01111223789999887666532          3579999999999


Q ss_pred             eEEEeeCCccCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceeecc
Q 011978          394 FVAVFRGHVGPVYQISWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDL  440 (473)
Q Consensus       394 ~~~~~~~h~~~v~~v~~sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~  440 (473)
                      .+..+.... ....++|+|||+ +++++. .++.|.++|+.+++.+.++
T Consensus       362 vv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          362 RINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            988876422 478899999999 888887 5999999999999988876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.45  E-value=1.9e-10  Score=108.04  Aligned_cols=308  Identities=9%  Similarity=0.022  Sum_probs=186.5

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeEEEcCC---------CCCEE-EEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGH---------KNWVL-CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~---------~~~v~-~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      ++..++.++.++.|..+|..+++.+......         ...+. .+..  ++..++.++.++.|..+|..+|+.....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            3667888888999999999999887665432         12232 2222  4568888999999999999998754321


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE-----EEEEecCCCeEEEeecCCeE
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTI  263 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~l~s~~~d~~i  263 (473)
                      ... . .+   ...|..   ....++.++.++.+..+|..+++.+..........     ...... ++.++.+..++.+
T Consensus       130 ~~~-~-~~---~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l  200 (376)
T 3q7m_A          130 KVA-G-EA---LSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRV  200 (376)
T ss_dssp             ECS-S-CC---CSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEE
T ss_pred             eCC-C-ce---EcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEE
Confidence            111 0 00   001111   13467788889999999999998876654322111     111112 5678889999999


Q ss_pred             EEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEE
Q 011978          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (473)
Q Consensus       264 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  343 (473)
                      ..+|..+|+.+.........-.. ...   .+    .+..                   .........++.++.++.+..
T Consensus       201 ~~~d~~tG~~~w~~~~~~~~~~~-~~~---~~----~~~~-------------------~~p~~~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          201 SAVLMEQGQMIWQQRISQATGST-EID---RL----SDVD-------------------TTPVVVNGVVFALAYNGNLTA  253 (376)
T ss_dssp             EEEETTTCCEEEEEECCC-------------------CCC-------------------CCCEEETTEEEEECTTSCEEE
T ss_pred             EEEECCCCcEEEEEecccCCCCc-ccc---cc----cccC-------------------CCcEEECCEEEEEecCcEEEE
Confidence            99999999887665432110000 000   00    0000                   000001245777778889999


Q ss_pred             EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC-CccCEEEEEEecCCCEEEEEeC
Q 011978          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQISWSADSRLLLSGSK  422 (473)
Q Consensus       344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~g~~l~s~s~  422 (473)
                      +|....+.......   .....+..  ++..|..++.++.+..+|..+|+.+..... ....+.....  .+..|+.++.
T Consensus       254 ~d~~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~  326 (376)
T 3q7m_A          254 LDLRSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDS  326 (376)
T ss_dssp             EETTTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred             EECCCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence            98765543222211   12233333  466788888899999999999998766652 1222222222  2567888889


Q ss_pred             CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       423 Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +|.++++|..+++.+.........+...-... +..|..++.||.|..|+
T Consensus       327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~-~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA-DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence            99999999999987655443222232211112 45788899999998875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.44  E-value=1.1e-11  Score=127.25  Aligned_cols=269  Identities=12%  Similarity=-0.008  Sum_probs=159.3

Q ss_pred             CCCCeEEEEecCCe---EEEee--CC---CCcccc-----ccCCCcCCcEEEEEeceeccCCCCceEEEeeCC-----Cc
Q 011978          160 ADGKHLVSGSKAGE---LQCWD--PQ---TGKPSG-----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GD  221 (473)
Q Consensus       160 ~dg~~l~s~~~dg~---i~iwd--~~---~~~~~~-----~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-----g~  221 (473)
                      |||++++....++.   -.+|.  ..   .++...     ....+|...+..+.|+|     ++.+++.++.+     ..
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SP-----DG~~la~~~~~~G~e~~~  190 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASD-----DGRLLAYSVQDGGSDWRT  190 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECT-----TSSEEEEEEEETTCSEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECC-----CCCEEEEEEcCCCCceEE
Confidence            67777776554432   34443  32   222111     01233434566777776     56777766543     36


Q ss_pred             EEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCe--------------EEEEECCCCce----eeeeeccCce
Q 011978          222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCT--------------IKVWETTQGKL----IRELKGHGHW  283 (473)
Q Consensus       222 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~--------------i~~wd~~~~~~----~~~~~~~~~~  283 (473)
                      |++||+.+++.+... .+...+..++|++|..|+.++.|+.              |++|++.++..    +.....+...
T Consensus       191 i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~  269 (741)
T 1yr2_A          191 VKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR  269 (741)
T ss_dssp             EEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred             EEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence            999999998875431 1112235678998854666655543              88999877652    2222222234


Q ss_pred             EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC-----CceEEEEeCCCCCCC-eeeec
Q 011978          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-----DFTMFLWEPAVSKQP-KTRMT  357 (473)
Q Consensus       284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~-~~~~~  357 (473)
                      +..+.++++..                                    .++..+.     ...+++||....... ...+.
T Consensus       270 ~~~~~~SpDG~------------------------------------~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~  313 (741)
T 1yr2_A          270 GHGASVSSDGR------------------------------------WVVITSSEGTDPVNTVHVARVTNGKIGPVTALI  313 (741)
T ss_dssp             EEEEEECTTSC------------------------------------EEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred             EEEEEECCCCC------------------------------------EEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence            56666666532                                    2332222     347888987654212 33344


Q ss_pred             CcccceeEEEECCCCcEEEEEECC----CcEEEEeCCCC--ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978          358 GHQQLVNHVYFSPDGQWVASASFD----KSIKLWNGTTG--KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       358 ~~~~~v~~v~~sp~g~~lasgs~d----~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~  431 (473)
                      .+....... ++|+|+.|+..+.+    +.|.+||+.++  +....+..+...+.+++|+ ++.++++...|+..+||.+
T Consensus       314 ~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          314 PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            444444444 34899998888764    45999998874  3444555555567788887 6678888888998777755


Q ss_pred             C-CCceeecccc-cCCCEEEEEEeeCCCEEE----EEeCCCcEEecc
Q 011978          432 R-TQKLKQDLPG-HADEVFAVDWSPDGEKVA----SGGKDRVLKLWM  472 (473)
Q Consensus       432 ~-~~~~~~~~~~-h~~~i~~l~~s~d~~~l~----s~~~D~~i~~w~  472 (473)
                      . .++....+.. +...+..++++||++.|+    +....++|.+|+
T Consensus       392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  438 (741)
T 1yr2_A          392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD  438 (741)
T ss_dssp             ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred             eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence            4 3444555554 356788999999998776    223346677764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=1.1e-09  Score=99.00  Aligned_cols=236  Identities=12%  Similarity=0.080  Sum_probs=157.3

Q ss_pred             CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (473)
Q Consensus       149 ~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~  228 (473)
                      ....+.++++.++|+..++...++.|.+||.. ++.....+......+.++.+.+     ++..+++...++.|..+|..
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-----LGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECTT
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-----CCCEEEEecCCCeEEEECCC
Confidence            34568899999999877777778999999987 5543322333335566776543     34456655557889999987


Q ss_pred             CCeEE-EEecCccccEEEEEecCCCeEEEee-cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcc
Q 011978          229 LRKCV-ICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (473)
Q Consensus       229 ~~~~~-~~~~~h~~~v~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  306 (473)
                       ++.. .........+.++++++++.++.+. .++.|..+|.. ++... +                             
T Consensus        92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~-----------------------------  139 (300)
T 2qc5_A           92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-Y-----------------------------  139 (300)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-E-----------------------------
T ss_pred             -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-c-----------------------------
Confidence             5443 2333334567888888777655544 36677777654 32211 0                             


Q ss_pred             cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEE
Q 011978          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (473)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l  386 (473)
                                                            .          .......+..++++++|++.++...++.|..
T Consensus       140 --------------------------------------~----------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  171 (300)
T 2qc5_A          140 --------------------------------------D----------LPNKGSYPAFITLGSDNALWFTENQNNSIGR  171 (300)
T ss_dssp             --------------------------------------E----------CSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             --------------------------------------c----------CCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence                                                  0          0001124678899999997776666788999


Q ss_pred             EeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-ecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978          387 WNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       387 wd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      +|. +++.... ...+...+.+++++++|++.++....+.|.+||. .++.. ..+..+...+.+++++++|+..++...
T Consensus       172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  249 (300)
T 2qc5_A          172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG  249 (300)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence            998 5654432 2234457899999999987777666778999998 44432 234444567899999999987777766


Q ss_pred             CCcEEecc
Q 011978          465 DRVLKLWM  472 (473)
Q Consensus       465 D~~i~~w~  472 (473)
                      ++.|..|.
T Consensus       250 ~~~i~~~~  257 (300)
T 2qc5_A          250 ANQIGRIT  257 (300)
T ss_dssp             TTEEEEEC
T ss_pred             CCeEEEEC
Confidence            77777664

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.42  E-value=2.3e-10  Score=108.32  Aligned_cols=238  Identities=13%  Similarity=0.122  Sum_probs=152.8

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC--eEEEeeCCCCcccc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSG  186 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg--~i~iwd~~~~~~~~  186 (473)
                      .....++|+|+++++++...++.|++||..++........... .. ++|+++++.|+++..++  .|.+|+..++....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4678999999999777777789999999988765444333222 33 99999999999888765  78888764332100


Q ss_pred             ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeecCCeEEE
Q 011978          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKV  265 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d~~i~~  265 (473)
                                 .+.                         ..        .......+.++++++ ++.|+.+..++.|+.
T Consensus       209 -----------~~g-------------------------~~--------~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~  244 (409)
T 3hrp_A          209 -----------RIG-------------------------QL--------GSTFSGKIGAVALDETEEWLYFVDSNKNFGR  244 (409)
T ss_dssp             -----------EEE-------------------------EC--------CTTSCSCCCBCEECTTSSEEEEECTTCEEEE
T ss_pred             -----------Eee-------------------------ec--------cchhcCCcEEEEEeCCCCeEEEEECCCcEEE
Confidence                       000                         00        000122345567787 677777777889999


Q ss_pred             EECCCCceeee----eeccCceE--EEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978          266 WETTQGKLIRE----LKGHGHWV--NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (473)
Q Consensus       266 wd~~~~~~~~~----~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  339 (473)
                      ||..++.....    ..+....-  ..+++++.                                   ....+++...++
T Consensus       245 ~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~-----------------------------------~g~lyv~d~~~~  289 (409)
T 3hrp_A          245 FNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV-----------------------------------DSNFYMSDQNLS  289 (409)
T ss_dssp             EETTTCCEEEEEECCCCSCCCCSSCCEEEEETT-----------------------------------TTEEEEEETTTT
T ss_pred             EECCCCCEEEEecccccCCCCCCccccEEEeCC-----------------------------------CCEEEEEeCCCC
Confidence            99876653211    11111111  13333331                                   122355556677


Q ss_pred             eEEEEeCCCCCCCeeeecCc---------------ccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeCC--
Q 011978          340 TMFLWEPAVSKQPKTRMTGH---------------QQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGH--  401 (473)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~---------------~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~h--  401 (473)
                      .|+.|+....   ...+.++               -.....++++|+|+++++-+ .++.|+.||..+++. ..+.++  
T Consensus       290 ~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~  365 (409)
T 3hrp_A          290 SVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVD  365 (409)
T ss_dssp             EEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTT
T ss_pred             EEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCC
Confidence            7888875432   1222221               23478999999999888877 789999999877764 333333  


Q ss_pred             -------------ccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978          402 -------------VGPVYQISWSADSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       402 -------------~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~  431 (473)
                                   ......++++|+|.++++-..++.|+.+++
T Consensus       366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                         246889999999888888778888887765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=6.2e-12  Score=116.57  Aligned_cols=263  Identities=14%  Similarity=0.111  Sum_probs=156.4

Q ss_pred             ccEEEEEECCCCCeEEEEe--CCCeEEEEeCCCCceeEEE-------cCCCCCEEEEEECCCCCeEEEEec-----CCeE
Q 011978          109 EAVLSVAFSPDGRQLASGS--GDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSK-----AGEL  174 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s--~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~l~~s~dg~~l~s~~~-----dg~i  174 (473)
                      ..+..++++|+|+.+++..  .++.++||.+.+++ +..+       ..+-..+..++++++|+++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5678899999999888864  23436666654433 2222       134567999999999876555433     5799


Q ss_pred             EEeeCCCCcccccc-C----CCcCCcEEEEEeceeccCCCCceEEEee---CCCcEEEEECCCCeEEEEecCccccEE-E
Q 011978          175 QCWDPQTGKPSGNP-L----SGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVSLRKCVICLSGHTLAVT-C  245 (473)
Q Consensus       175 ~iwd~~~~~~~~~~-~----~~~~~~v~~i~~~~~~~~~~~~~~~s~s---~dg~i~iwd~~~~~~~~~~~~h~~~v~-~  245 (473)
                      .+||+.+++..... +    ..+...++.+.+.+.    .+..+++..   .++.|.+||+.+++....+.+|..... .
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~----~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI----HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT----TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecC----CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            99999988743211 1    112234466666541    123445555   678899999887766555544321100 0


Q ss_pred             EEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978          246 VKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (473)
Q Consensus       246 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
                      ..+..++.                                                                        
T Consensus       172 ~~~~~~g~------------------------------------------------------------------------  179 (343)
T 2qe8_A          172 IDLVIDGV------------------------------------------------------------------------  179 (343)
T ss_dssp             CCCEETTE------------------------------------------------------------------------
T ss_pred             cceeECCE------------------------------------------------------------------------
Confidence            00000110                                                                        


Q ss_pred             CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC-cEEEEeCC---CCc-----eEE
Q 011978          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGT---TGK-----FVA  396 (473)
Q Consensus       326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~-~v~lwd~~---~~~-----~~~  396 (473)
                           .+.+.+.++.+..|.               ..+..++|+|+|+.|+.+..++ .+..++..   .+.     ...
T Consensus       180 -----~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (343)
T 2qe8_A          180 -----PVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS  239 (343)
T ss_dssp             -----ECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred             -----EEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence                 011222233333332               1356799999999998887766 44444421   111     000


Q ss_pred             --EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-cCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978          397 --VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVL  468 (473)
Q Consensus       397 --~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i  468 (473)
                        ...++.+....++++++|+++++...++.|.+||..+++....... +.....+++|.++|+.+++.+..+.+
T Consensus       240 ~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          240 KIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             ceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence              1113344566799999999999988899999999855554322221 24568899999999988887765544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.41  E-value=9.8e-10  Score=102.57  Aligned_cols=265  Identities=11%  Similarity=-0.002  Sum_probs=164.9

Q ss_pred             ECCCCCeEEEEec--CC---eEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEee----------CCCcE
Q 011978          158 WSADGKHLVSGSK--AG---ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDGDA  222 (473)
Q Consensus       158 ~s~dg~~l~s~~~--dg---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s----------~dg~i  222 (473)
                      ..|+++++++...  .+   .|.++|..+++.......+ ...  .+.++|     +++++..+.          .++.|
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~sp-----Dg~~lyv~n~~~~~~~rg~~~~~v   99 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAH-----SGSEFALASTSFSRIAKGKRTDYV   99 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECC-----CCCEEEEEeccccccccCCCCCeE
Confidence            3467777776653  22   8899999988765433222 222  566655     555666554          36789


Q ss_pred             EEEECCCCeEEEEecCc-------cccEEEEEecCCCe-EEEeec--CCeEEEEECCCCceeee-eeccCceEEEEEecc
Q 011978          223 RIWDVSLRKCVICLSGH-------TLAVTCVKWGGDGV-IYTGSQ--DCTIKVWETTQGKLIRE-LKGHGHWVNSLALST  291 (473)
Q Consensus       223 ~iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~-l~s~~~--d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~  291 (473)
                      .+||..+.+.+..+.-.       ......+.|++||. |+.+..  ++.|.++| .+++.+.. +.....    +.+.+
T Consensus       100 ~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~----~~~~~  174 (373)
T 2mad_H          100 EVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC----YHIHP  174 (373)
T ss_pred             EEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce----EEEEe
Confidence            99999887776654311       12234688999984 666553  57899999 99888766 433221    11111


Q ss_pred             cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee-----cCcccceeEE
Q 011978          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHV  366 (473)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~v  366 (473)
                      .                                   ....+++.+.|+.+.+++. ..+......     .+........
T Consensus       175 ~-----------------------------------~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~  218 (373)
T 2mad_H          175 G-----------------------------------APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQP  218 (373)
T ss_pred             C-----------------------------------CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecc
Confidence            1                                   1224556667888888887 433221100     1111112334


Q ss_pred             EECCCCcEEEEEECCCcEEEEeCCCCc--eEEEeeCC----------ccCEEEEEEecCCCEEEEEeC----------CC
Q 011978          367 YFSPDGQWVASASFDKSIKLWNGTTGK--FVAVFRGH----------VGPVYQISWSADSRLLLSGSK----------DS  424 (473)
Q Consensus       367 ~~sp~g~~lasgs~d~~v~lwd~~~~~--~~~~~~~h----------~~~v~~v~~sp~g~~l~s~s~----------Dg  424 (473)
                      .+.+++..++..+..+.+.+.|..++.  .+..+.-.          ......++++||++.|..+..          ++
T Consensus       219 ~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          219 AQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             eeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            566666555555577889999987553  22222110          122445788999988777653          35


Q ss_pred             cEEEEECCCCceeecccccCCCEEEEEEeeCCC-EEEEEe-CCCcEEecc
Q 011978          425 TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGG-KDRVLKLWM  472 (473)
Q Consensus       425 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~-~D~~i~~w~  472 (473)
                      .|.++|..+++.+.++.. .....++.|+|||+ .++++. .++.|.+++
T Consensus       299 ~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          299 EVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             eEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            799999999998887753 23578999999999 777777 588998875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=4.4e-10  Score=101.84  Aligned_cols=228  Identities=10%  Similarity=0.117  Sum_probs=144.1

Q ss_pred             EEEEEECCCCCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978          111 VLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (473)
Q Consensus       111 V~~~~~sp~~~~-lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~  189 (473)
                      -....|+|++.. +++...++.|..||..++... .+ .....+.+++++++|+++++ . ++.|.+||.++++......
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe
Confidence            456889996554 555567899999999876542 22 23467999999999995554 3 5789999998776422111


Q ss_pred             --CC-cCCcEEEEEeceeccCCCCceEEEeeC---------CCcEEEEECCC-CeEEEEecCccccEEEEEecCCCe-E-
Q 011978          190 --SG-HKKWITGISWEPVHLNAPCRRFVSASK---------DGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV-I-  254 (473)
Q Consensus       190 --~~-~~~~v~~i~~~~~~~~~~~~~~~s~s~---------dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-l-  254 (473)
                        .+ ....++.+.+.|     ++..+++...         ...-.+|.+.. ++... +..+......++|++++. + 
T Consensus        91 ~~~~~~~~~~~di~~d~-----dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~ly  164 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDP-----AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFY  164 (297)
T ss_dssp             CCTTCSSEEEEEEEECT-----TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEE
T ss_pred             cCCCCCCCCCCCEEECC-----CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEE
Confidence              11 123356666554     3444443322         13345555542 22222 222333456788998873 4 


Q ss_pred             EEeecCCeEEEEEC--CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          255 YTGSQDCTIKVWET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       255 ~s~~~d~~i~~wd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                      ++.+.++.|..|++  .+|..... +                                                    .+
T Consensus       165 v~~~~~~~i~~~~~d~~~G~~~~~-~----------------------------------------------------~~  191 (297)
T 3g4e_A          165 YIDSLSYSVDAFDYDLQTGQISNR-R----------------------------------------------------SV  191 (297)
T ss_dssp             EEEGGGTEEEEEEECTTTCCEEEE-E----------------------------------------------------EE
T ss_pred             EecCCCCcEEEEeccCCCCcccCc-E----------------------------------------------------EE
Confidence            45566788888876  34432100 0                                                    00


Q ss_pred             EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe-
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS-  411 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-  411 (473)
                      +           +          +..+...+..++++++|++.++...++.|..||..+++.+..+..+...+++++|. 
T Consensus       192 ~-----------~----------~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g  250 (297)
T 3g4e_A          192 Y-----------K----------LEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGG  250 (297)
T ss_dssp             E-----------E----------CCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEES
T ss_pred             E-----------E----------CCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeC
Confidence            0           0          00112345678999999988888888899999999999998888777789999998 


Q ss_pred             cCCCEEEEEeC
Q 011978          412 ADSRLLLSGSK  422 (473)
Q Consensus       412 p~g~~l~s~s~  422 (473)
                      ||++.|..++.
T Consensus       251 ~d~~~L~vt~~  261 (297)
T 3g4e_A          251 KNYSEMYVTCA  261 (297)
T ss_dssp             GGGCEEEEEEB
T ss_pred             CCCCEEEEEcC
Confidence            88887665543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.39  E-value=1.1e-09  Score=99.08  Aligned_cols=233  Identities=11%  Similarity=0.052  Sum_probs=145.5

Q ss_pred             EEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceee
Q 011978          196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR  275 (473)
Q Consensus       196 v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  275 (473)
                      -.+..|.|.    ....+++...++.|..||..+++....  .....+.++++++++.++.+. ++.|.+||..+++...
T Consensus        15 ~Egp~w~~~----~~~l~~~d~~~~~i~~~d~~~~~~~~~--~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           15 GESPVWEEV----SNSLLFVDIPAKKVCRWDSFTKQVQRV--TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             EEEEEEETT----TTEEEEEETTTTEEEEEETTTCCEEEE--ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEE
T ss_pred             ccCCeEECC----CCEEEEEECCCCEEEEEECCCCcEEEE--eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEE
Confidence            445566542    234556666788999999987765322  234568899999998776665 6789999998776533


Q ss_pred             eeec----cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978          276 ELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ  351 (473)
Q Consensus       276 ~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  351 (473)
                      ....    ....++.+++.++..+..+........                         .......+.++.++..  ..
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~-------------------------~~~~~~~~~l~~~d~~--g~  140 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP-------------------------AVLERHQGALYSLFPD--HH  140 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT-------------------------TBCCTTCEEEEEECTT--SC
T ss_pred             EEecCCCCCCCCCCCEEECCCCCEEEecCCccccc-------------------------ccccCCCcEEEEEECC--CC
Confidence            2221    123355566655432211111000000                         0000012334444432  11


Q ss_pred             CeeeecCcccceeEEEECCCCcEEE-EEECCCcEEEEeC--CCCceE-----EEeeCCccCEEEEEEecCCCEEEEEeCC
Q 011978          352 PKTRMTGHQQLVNHVYFSPDGQWVA-SASFDKSIKLWNG--TTGKFV-----AVFRGHVGPVYQISWSADSRLLLSGSKD  423 (473)
Q Consensus       352 ~~~~~~~~~~~v~~v~~sp~g~~la-sgs~d~~v~lwd~--~~~~~~-----~~~~~h~~~v~~v~~sp~g~~l~s~s~D  423 (473)
                       ......+....+.++|+||++.|+ +.+.++.|.+||+  .++...     ..+..+.+....++++++|++.++...+
T Consensus       141 -~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~  219 (297)
T 3g4e_A          141 -VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG  219 (297)
T ss_dssp             -EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT
T ss_pred             -EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC
Confidence             222223334568899999998765 4555788999987  455432     2233344568899999999988888778


Q ss_pred             CcEEEEECCCCceeecccccCCCEEEEEEe-eCCCEEEEEe
Q 011978          424 STLKVWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGG  463 (473)
Q Consensus       424 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s-~d~~~l~s~~  463 (473)
                      +.|..||..+++.+..+..+...+++++|. ||++.|..++
T Consensus       220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            899999999888888777776789999998 8888765444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.39  E-value=5.2e-11  Score=120.14  Aligned_cols=313  Identities=13%  Similarity=0.100  Sum_probs=187.7

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC-----------CEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN-----------WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      +..|+.++.++.|.-+|..+++.+........           ....+++  ++..|+.++.|+.|..+|..+|+.....
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            56677777889999999999998877653321           0112233  4668889999999999999999865432


Q ss_pred             CCC-cCCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeEEEEecCcccc-------------------
Q 011978          189 LSG-HKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLA-------------------  242 (473)
Q Consensus       189 ~~~-~~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~~~~~~~h~~~-------------------  242 (473)
                      ... .......+.-.|..   ....++.++.      ++.|..+|..+++.+..+......                   
T Consensus       155 ~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~  231 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP  231 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred             cCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence            111 00000000011111   1234555443      689999999999988765421110                   


Q ss_pred             -------------EEEEEecCC-CeEEEeecCC-------------------eEEEEECCCCceeeeeeccCceEEEEEe
Q 011978          243 -------------VTCVKWGGD-GVIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGHWVNSLAL  289 (473)
Q Consensus       243 -------------v~~~~~~~~-~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~~v~~~~~  289 (473)
                                   ...++++++ +.++.+..++                   .|..+|..+|+.+..++...+.......
T Consensus       232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~  311 (677)
T 1kb0_A          232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS  311 (677)
T ss_dssp             GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence                         123456654 4677665553                   5889999999888766532111000000


Q ss_pred             cccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccc--------
Q 011978          290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ--------  361 (473)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------  361 (473)
                      ...-.+...                        ...+.....++.++.+|.++++|...++...........        
T Consensus       312 ~~~p~l~~~------------------------~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~  367 (677)
T 1kb0_A          312 TQPMILADI------------------------KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKH  367 (677)
T ss_dssp             CSCCEEEEE------------------------EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTT
T ss_pred             CCCcEEEec------------------------ccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCC
Confidence            000000000                        000001135788889999999997665432211111000        


Q ss_pred             --c------------------------eeEEEECCCCcEEEEEECC----------------------------------
Q 011978          362 --L------------------------VNHVYFSPDGQWVASASFD----------------------------------  381 (473)
Q Consensus       362 --~------------------------v~~v~~sp~g~~lasgs~d----------------------------------  381 (473)
                        .                        -..++|+|++.++++...+                                  
T Consensus       368 g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  447 (677)
T 1kb0_A          368 GKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN  447 (677)
T ss_dssp             SCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred             CceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccc
Confidence              0                        0257899998888776432                                  


Q ss_pred             ---------CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC-CCEEEEE
Q 011978          382 ---------KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-DEVFAVD  451 (473)
Q Consensus       382 ---------~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~  451 (473)
                               +.|..||+.+++.+-.++. ..++....++.++..++.++.||.+++||.++++.+..+.... ....-+.
T Consensus       448 ~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~  526 (677)
T 1kb0_A          448 AEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPST  526 (677)
T ss_dssp             SSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             cccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEE
Confidence                     6799999999998877653 3344555667788888999999999999999999887665322 2223456


Q ss_pred             EeeCCCEEEEE
Q 011978          452 WSPDGEKVASG  462 (473)
Q Consensus       452 ~s~d~~~l~s~  462 (473)
                      |+++|+.++..
T Consensus       527 y~~~G~~~v~~  537 (677)
T 1kb0_A          527 YMVDGRQYVSV  537 (677)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEeCCEEEEEE
Confidence            77898765543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.38  E-value=4.8e-11  Score=108.13  Aligned_cols=193  Identities=10%  Similarity=0.043  Sum_probs=130.9

Q ss_pred             CccccEEEEEecCCCe--EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978          238 GHTLAVTCVKWGGDGV--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (473)
Q Consensus       238 ~h~~~v~~~~~~~~~~--l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (473)
                      .+.....++.|++++.  ++++..++.|..||..++  ...+..+...+..++++++.                      
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg----------------------   80 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG----------------------   80 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC----------------------
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC----------------------
Confidence            3445567889998874  677888999999998876  55565555666777665542                      


Q ss_pred             HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee--ecC-cccceeEEEECCCCcEEEEE----E---------
Q 011978          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTG-HQQLVNHVYFSPDGQWVASA----S---------  379 (473)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~-~~~~v~~v~~sp~g~~lasg----s---------  379 (473)
                                    ..+++...++.|.+||..........  ..+ ....++.++++|+|+++++.    +         
T Consensus        81 --------------~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~  146 (296)
T 3e5z_A           81 --------------HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG  146 (296)
T ss_dssp             --------------CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred             --------------cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence                          23555556688999997544321110  011 12346789999999998873    3         


Q ss_pred             ----CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCce---eecccccCCCEEEEE
Q 011978          380 ----FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR-TQKL---KQDLPGHADEVFAVD  451 (473)
Q Consensus       380 ----~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~-~~~~---~~~~~~h~~~i~~l~  451 (473)
                          ..+.|..++.. ++. ..+..+......++|+|||+.|++.+.++.|++||+. .++.   ...+..+...+.+++
T Consensus       147 ~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~  224 (296)
T 3e5z_A          147 EMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR  224 (296)
T ss_dssp             CCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE
T ss_pred             cccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE
Confidence                12456666655 443 4445566778999999999988777788999999986 4443   222233445567899


Q ss_pred             EeeCCCEEEEEeCCCcEEecc
Q 011978          452 WSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       452 ~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++++|+.+++.  ++.|.+|.
T Consensus       225 ~d~~G~l~v~~--~~~v~~~~  243 (296)
T 3e5z_A          225 VDAGGLIWASA--GDGVHVLT  243 (296)
T ss_dssp             EBTTSCEEEEE--TTEEEEEC
T ss_pred             ECCCCCEEEEc--CCeEEEEC
Confidence            99999877766  77888875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=1.4e-11  Score=114.01  Aligned_cols=169  Identities=11%  Similarity=0.082  Sum_probs=127.7

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc-----------eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~-----------~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      .++.+++++...++++|+.+ .+++|+++...           +.... .+.. |..|+|  |++.|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            68899999999999999998 45569864322           21222 3556 999999  89999998 889999999


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEee
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS  258 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~  258 (473)
                      +.+... ......|...+..+.+.+.       .+++++.||.+.+||+..+....    +...|+|++|+++| ++.|.
T Consensus       113 v~sl~~-~~~~~~~~~~v~~i~~~~p-------~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~  179 (388)
T 1xip_A          113 LEELSE-FRTVTSFEKPVFQLKNVNN-------TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLL  179 (388)
T ss_dssp             SSSTTC-EEEEEECSSCEEEEEECSS-------EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEE
T ss_pred             chhhhc-cCccceeecceeeEEecCC-------CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEE
Confidence            876542 2234456667777665431       38899999999999999877653    45689999999999 67899


Q ss_pred             cCCeEEEEECCCCce--eeee------e---ccCceEEEEEecccceeee
Q 011978          259 QDCTIKVWETTQGKL--IREL------K---GHGHWVNSLALSTEYALRT  297 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~~  297 (473)
                      .||++++|+...+..  .+.+      .   +|...|.++.+.+++.+..
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence            999999998877664  4444      2   3678899999887765543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=1.7e-11  Score=113.49  Aligned_cols=181  Identities=11%  Similarity=-0.028  Sum_probs=111.9

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK  231 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~  231 (473)
                      .+..|++++....+++|+.+ .+.+|++++.+.....   ....     +.|                           .
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~---~~~~-----~~~---------------------------~   82 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITS---DSTP-----LTF---------------------------K   82 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHS---SSCC-----CCC---------------------------S
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcc---cccc-----ccc---------------------------e
Confidence            58889999999999999987 5556986543210000   0000     000                           0


Q ss_pred             EEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978          232 CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (473)
Q Consensus       232 ~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (473)
                      ...   .+.. |+.++| .+..|+++ .++.|++||+.+.........+...+..+...+                    
T Consensus        83 ~~~---~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~--------------------  136 (388)
T 1xip_A           83 WEK---EIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN--------------------  136 (388)
T ss_dssp             EEE---ECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS--------------------
T ss_pred             EEe---eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC--------------------
Confidence            000   1223 556666 55555555 666666666655444444444444443332111                    


Q ss_pred             HHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (473)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~  391 (473)
                                       + .++.++.||.+.+||+......     .+...|+|++|||+|  ++.|..||++++|+...
T Consensus       137 -----------------p-~~av~~~dG~L~v~dl~~~~~~-----~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~  191 (388)
T 1xip_A          137 -----------------N-TLVILNSVNDLSALDLRTKSTK-----QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN  191 (388)
T ss_dssp             -----------------S-EEEEEETTSEEEEEETTTCCEE-----EEEESEEEEEECSSE--EEEEETTSCEEEEEEET
T ss_pred             -----------------C-CEEEEECCCCEEEEEccCCccc-----cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC
Confidence                             1 2556666777777776533221     134579999999999  78899999999999887


Q ss_pred             Cce--EEEe------e---CCccCEEEEEEecCCCEEEE
Q 011978          392 GKF--VAVF------R---GHVGPVYQISWSADSRLLLS  419 (473)
Q Consensus       392 ~~~--~~~~------~---~h~~~v~~v~~sp~g~~l~s  419 (473)
                      ++.  ..++      .   +|...|.+|.|.+++.++++
T Consensus       192 ~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          192 GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            775  5555      2   37788999999999999887

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.35  E-value=7.3e-11  Score=120.04  Aligned_cols=244  Identities=14%  Similarity=0.130  Sum_probs=144.0

Q ss_pred             cCCcccEEEEEECCCCCeEEEEe-----CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC-------
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGS-----GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG-------  172 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg-------  172 (473)
                      .+|...+..++|||||++||.+.     ...+|++||+.+++.+.... +......++|+ ||+.|+.++.+.       
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            35677889999999999998542     33689999999987543211 11112467899 999999988774       


Q ss_pred             ------eEEEeeCCCCcccccc---CCC-cCCcEEEEEeceeccCCCCceEEE-ee---CCCcEEEEECCCCe-EEEEec
Q 011978          173 ------ELQCWDPQTGKPSGNP---LSG-HKKWITGISWEPVHLNAPCRRFVS-AS---KDGDARIWDVSLRK-CVICLS  237 (473)
Q Consensus       173 ------~i~iwd~~~~~~~~~~---~~~-~~~~v~~i~~~~~~~~~~~~~~~s-~s---~dg~i~iwd~~~~~-~~~~~~  237 (473)
                            .|++|++.++......   ... |.....++.|+|     ++++++. .+   ....+.++|+.++. ....+.
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~  277 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-----DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ  277 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-----TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-----CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence                  3999998876532111   223 444567777765     4555543 32   23578999987652 223333


Q ss_pred             CccccEEEEEecC-CCe-EEEeecC---CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978          238 GHTLAVTCVKWGG-DGV-IYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (473)
Q Consensus       238 ~h~~~v~~~~~~~-~~~-l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (473)
                      .+....... |.+ ++. ++....+   +.|..+|+.++..                                       
T Consensus       278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~---------------------------------------  317 (693)
T 3iuj_A          278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP---------------------------------------  317 (693)
T ss_dssp             CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG---------------------------------------
T ss_pred             CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc---------------------------------------
Confidence            333333332 222 222 2222222   3344444433211                                       


Q ss_pred             HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC---cEEEEeC
Q 011978          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNG  389 (473)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~---~v~lwd~  389 (473)
                                                            .....+..|...+.  .|++++++|+....++   .|++||+
T Consensus       318 --------------------------------------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~  357 (693)
T 3iuj_A          318 --------------------------------------AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDY  357 (693)
T ss_dssp             --------------------------------------GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred             --------------------------------------cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEEC
Confidence                                                  00011222333333  7888888887766544   6899998


Q ss_pred             CCCceEEEee-CCccCEEEEEEecCCCEEEEEeCC----CcEEEEECCCCce
Q 011978          390 TTGKFVAVFR-GHVGPVYQISWSADSRLLLSGSKD----STLKVWDIRTQKL  436 (473)
Q Consensus       390 ~~~~~~~~~~-~h~~~v~~v~~sp~g~~l~s~s~D----g~i~iwd~~~~~~  436 (473)
                      ..+. ...+. .+.+.+..+.++|++..|+....+    ++++.||+.+++.
T Consensus       358 ~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          358 EGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             TSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             CCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            7544 34433 344567888889988876655444    7899999977653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.32  E-value=5.5e-10  Score=103.00  Aligned_cols=268  Identities=14%  Similarity=0.097  Sum_probs=169.9

Q ss_pred             EEECCCCCeEEEEec-----CCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEee----------CCC
Q 011978          156 IAWSADGKHLVSGSK-----AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDG  220 (473)
Q Consensus       156 l~~s~dg~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s----------~dg  220 (473)
                      ....|+++.++....     ++.|.+.|..+++.......+.. +  .+.++|     +++++..++          .++
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P--~va~sp-----DG~~lyVan~~~~r~~~G~~~~  109 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P--NPVVAD-----DGSFIAHASTVFSRIARGERTD  109 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C--EEEECT-----TSSCEEEEEEEEEETTEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C--cEEECC-----CCCEEEEEcccccccccCCCCC
Confidence            344689998888765     68999999999886654433322 2  366655     556665554          367


Q ss_pred             cEEEEECCCCeEEEEecCc-------cccEEEEEecCCCe-EEEee--cCCeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978          221 DARIWDVSLRKCVICLSGH-------TLAVTCVKWGGDGV-IYTGS--QDCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (473)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~-l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  290 (473)
                      .|.+||..+.+.+..+.-.       ......+.+++||. ++.+.  .++.|.++|..+++.+.++...+..    .+.
T Consensus       110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~----~~~  185 (386)
T 3sjl_D          110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY----HIF  185 (386)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE----EEE
T ss_pred             EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc----eee
Confidence            8999999999887765311       11234578899984 56554  3689999999999988877543310    001


Q ss_pred             ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc----cc-eeE
Q 011978          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ----QL-VNH  365 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~-v~~  365 (473)
                      |.                                   ....+++.+.||++.+.+.............+.    .. ...
T Consensus       186 P~-----------------------------------g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~  230 (386)
T 3sjl_D          186 PT-----------------------------------APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH  230 (386)
T ss_dssp             EE-----------------------------------ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSC
T ss_pred             cC-----------------------------------CCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccc
Confidence            10                                   122456667788888777654222211111110    11 122


Q ss_pred             EEE-CCCCcEEEEEECCCcEEEEeCCCCc--eEEEee---------C-CccCEEEEEEecCCCEEEEEeC----------
Q 011978          366 VYF-SPDGQWVASASFDKSIKLWNGTTGK--FVAVFR---------G-HVGPVYQISWSADSRLLLSGSK----------  422 (473)
Q Consensus       366 v~~-sp~g~~lasgs~d~~v~lwd~~~~~--~~~~~~---------~-h~~~v~~v~~sp~g~~l~s~s~----------  422 (473)
                      .+| .++|+++. .+.+|.|++.|..++.  .+..+.         + ..+....++++|+++.|+....          
T Consensus       231 ~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~  309 (386)
T 3sjl_D          231 PAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  309 (386)
T ss_dssp             CEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             ceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCC
Confidence            355 46786554 5668999999987654  222221         0 1123335778999998877642          


Q ss_pred             CCcEEEEECCCCceeecccccCCCEEEEEEeeCCC-EEEE-EeCCCcEEecc
Q 011978          423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVAS-GGKDRVLKLWM  472 (473)
Q Consensus       423 Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s-~~~D~~i~~w~  472 (473)
                      .+.|.++|+.+++.+..+.-. ..++++.+++|++ +|++ ...++.|.+++
T Consensus       310 ~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD  360 (386)
T 3sjl_D          310 SRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHD  360 (386)
T ss_dssp             EEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            257999999999988877642 3678999999997 5655 45588888775

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.31  E-value=4.3e-09  Score=96.59  Aligned_cols=219  Identities=12%  Similarity=0.098  Sum_probs=138.3

Q ss_pred             EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeee
Q 011978          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE  276 (473)
Q Consensus       197 ~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  276 (473)
                      .+..|.|.    ....+++...++.|..||..+++.....  ....+.++.+++++.++.++.+ .|.+||..+++....
T Consensus        52 egp~~~~~----~~~l~~~d~~~~~i~~~d~~~~~~~~~~--~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           52 EGPTFDPA----SGTAWWFNILERELHELHLASGRKTVHA--LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLH  124 (326)
T ss_dssp             EEEEEETT----TTEEEEEEGGGTEEEEEETTTTEEEEEE--CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEE
T ss_pred             cCCeEeCC----CCEEEEEECCCCEEEEEECCCCcEEEEE--CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEE
Confidence            34555542    1335566667889999999887654322  2356889999999876666644 599999888765332


Q ss_pred             eec----cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec------CCceEEEEeC
Q 011978          277 LKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS------DDFTMFLWEP  346 (473)
Q Consensus       277 ~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~d~~i~iwd~  346 (473)
                      ...    ....++.+.++++..+                                    +++..      ..+.+..++ 
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l------------------------------------~v~~~~~~~~~~~~~l~~~~-  167 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGAL------------------------------------WIGTMGRKAETGAGSIYHVA-  167 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCE------------------------------------EEEEEETTCCTTCEEEEEEE-
T ss_pred             eeCCCCCCCCCCCCEEECCCCCE------------------------------------EEEeCCCcCCCCceEEEEEe-
Confidence            211    1234566666554322                                    12111      123444444 


Q ss_pred             CCCCCCeeeecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCC--CC-ce-----EEEeeCCccCEEEEEEecCCCEE
Q 011978          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGT--TG-KF-----VAVFRGHVGPVYQISWSADSRLL  417 (473)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~--~~-~~-----~~~~~~h~~~v~~v~~sp~g~~l  417 (473)
                      .  .. ...+..+....+.++|+|||+.|+.+ +.++.|.+||..  ++ +.     ...+....+....++++++|++.
T Consensus       168 ~--g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lw  244 (326)
T 2ghs_A          168 K--GK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW  244 (326)
T ss_dssp             T--TE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             C--Cc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEE
Confidence            1  11 11222223356789999999877555 456889999986  55 32     22333344567889999999988


Q ss_pred             EEEeCCCcEEEEECCCCceeecccccCCCEEEEEEe-eCCCEEEEEe
Q 011978          418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGG  463 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s-~d~~~l~s~~  463 (473)
                      ++...++.|.+||. .++....+..+...+.+++|+ +|++.|..++
T Consensus       245 va~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          245 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            77767788999998 566666666566679999998 8887765444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.29  E-value=2.3e-09  Score=101.46  Aligned_cols=231  Identities=12%  Similarity=0.114  Sum_probs=147.2

Q ss_pred             cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC--eEEEEECCCC
Q 011978          195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC--TIKVWETTQG  271 (473)
Q Consensus       195 ~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~--~i~~wd~~~~  271 (473)
                      ....++|.+     ++..+++...++.|+.||..++............ . ++|++++ .|+++..++  .|.+++...+
T Consensus       132 ~P~~la~d~-----~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          132 YMWGIAAVG-----NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CEEEEEECS-----TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CceEEEEeC-----CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            456676654     4456677777789999999887766554443222 2 8888887 467776655  7888887665


Q ss_pred             ceeeee----eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978          272 KLIREL----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (473)
Q Consensus       272 ~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  347 (473)
                      .....+    .........+++++.                                    ...|+.+..++.++.||..
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~------------------------------------~g~lyv~d~~~~I~~~d~~  248 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDET------------------------------------EEWLYFVDSNKNFGRFNVK  248 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTT------------------------------------SSEEEEECTTCEEEEEETT
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCC------------------------------------CCeEEEEECCCcEEEEECC
Confidence            433322    101122223333221                                    1234445567889999876


Q ss_pred             CCCCCeee---ecCcccce-e-EEEECCC-CcEEEEEECCCcEEEEeCCCCceEEEeeCC---------------ccCEE
Q 011978          348 VSKQPKTR---MTGHQQLV-N-HVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGH---------------VGPVY  406 (473)
Q Consensus       348 ~~~~~~~~---~~~~~~~v-~-~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~~~~~~h---------------~~~v~  406 (473)
                      ........   ..++...- . .++|+|+ +.++++-..++.|+.|+....  +..+.++               .....
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~  326 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPN  326 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence            44311110   11222222 2 8999995 666666667889999987643  2333332               23578


Q ss_pred             EEEEecCCCEEEEEe-CCCcEEEEECCCCceeeccccc---------------CCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          407 QISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGH---------------ADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       407 ~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h---------------~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                      .++++|+|+++++-+ .++.|+.||+.+++.. ++.++               -.....++++++|..+++-..+++|+.
T Consensus       327 gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~  405 (409)
T 3hrp_A          327 GMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK  405 (409)
T ss_dssp             EEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred             EEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence            999999999877777 7889999998776543 33332               235789999999888888888888876


Q ss_pred             c
Q 011978          471 W  471 (473)
Q Consensus       471 w  471 (473)
                      +
T Consensus       406 i  406 (409)
T 3hrp_A          406 Y  406 (409)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.28  E-value=1.9e-10  Score=105.85  Aligned_cols=296  Identities=14%  Similarity=0.081  Sum_probs=179.2

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK  193 (473)
Q Consensus       114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  193 (473)
                      +.+..++. |..++.++.|..|| .+++.......+...+.++...++|. |..++.+  |..+|. +++..... ....
T Consensus        25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~-~~~~   97 (330)
T 3hxj_A           25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRF-DTKK   97 (330)
T ss_dssp             CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGS-CC--
T ss_pred             ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEE-ECCC
Confidence            34445554 56666788899999 77766544333334456777777764 5555544  888886 55543221 1111


Q ss_pred             CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCce
Q 011978          194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL  273 (473)
Q Consensus       194 ~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  273 (473)
                      .....    +..   ....+..++.++.+..+|.. ++.......+...+.++...+++.++.++.++.+..+|.. ++.
T Consensus        98 ~~~~~----~~~---~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~  168 (330)
T 3hxj_A           98 AIVSD----FTI---FEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTE  168 (330)
T ss_dssp             ---CC----EEE---ETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCE
T ss_pred             CcccC----ceE---ECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCE
Confidence            11111    111   13467778888999999988 7766655555445566666778888889999999999988 776


Q ss_pred             eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe
Q 011978          274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK  353 (473)
Q Consensus       274 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  353 (473)
                      ...+......+.++...                                     ....+..++  +.+..+| .... ..
T Consensus       169 ~~~~~~~~~~~~~~~~d-------------------------------------~~g~l~v~t--~~l~~~d-~~g~-~~  207 (330)
T 3hxj_A          169 KWRFKTNDAITSAASIG-------------------------------------KDGTIYFGS--DKVYAIN-PDGT-EK  207 (330)
T ss_dssp             EEEEECSSCCCSCCEEC-------------------------------------TTCCEEEES--SSEEEEC-TTSC-EE
T ss_pred             eEEEecCCCceeeeEEc-------------------------------------CCCEEEEEe--CEEEEEC-CCCc-EE
Confidence            65544322211111111                                     112345555  6777787 3222 22


Q ss_pred             eeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       354 ~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      .........+.++++.++|. |..++.++.+..+|. +++.+..+......+..+.+.+++ .|..++.+|.|..+|. +
T Consensus       208 ~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~  283 (330)
T 3hxj_A          208 WNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-D  283 (330)
T ss_dssp             EEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-T
T ss_pred             EEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-C
Confidence            22223335577888888876 445666778888874 566666655444444445555566 4566777888999996 5


Q ss_pred             CceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          434 QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       434 ~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      ++...........+.++...++|+ |..++.+|.+++.
T Consensus       284 g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~  320 (330)
T 3hxj_A          284 GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL  320 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred             CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence            655544433344566677777775 5668888888764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.27  E-value=6.8e-09  Score=95.26  Aligned_cols=225  Identities=13%  Similarity=0.081  Sum_probs=139.1

Q ss_pred             EEEEEECCCCCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc-
Q 011978          111 VLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-  188 (473)
Q Consensus       111 V~~~~~sp~~~~-lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~-  188 (473)
                      ...++|+|++.. +++...++.|..||..++... .+. ....+.+++|+++|+++++. . ..|.+||..+++..... 
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence            456789998655 455557889999999877532 222 34579999999999877654 3 45999999877643211 


Q ss_pred             CC-Cc-CCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEE-Eee
Q 011978          189 LS-GH-KKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY-TGS  258 (473)
Q Consensus       189 ~~-~~-~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~-s~~  258 (473)
                      .. +. ...++.+.+.|     ++..+++...      .+.|..+|  +++... +..+......++|++++ .++ +.+
T Consensus       127 ~~~~~~~~~~~~i~~d~-----~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHP-----SGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             SSTTCTTEEEEEEEECT-----TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEET
T ss_pred             CCCCCCCCCCCCEEECC-----CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEEC
Confidence            11 11 23466676665     3344443322      13444445  444332 22223345678899887 344 445


Q ss_pred             cCCeEEEEECC--CC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          259 QDCTIKVWETT--QG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       259 ~d~~i~~wd~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      .++.|.+||+.  +| ....      .                                               ..+.  
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~------~-----------------------------------------------~~~~--  223 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGK------A-----------------------------------------------EVFI--  223 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSC------C-----------------------------------------------EEEE--
T ss_pred             CCCEEEEEEcccccCCcccC------c-----------------------------------------------eEEE--
Confidence            56788888864  33 2100      0                                               0000  


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe-cCC
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS-ADS  414 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~g  414 (473)
                               +          +......+..++++++|.+.++...++.|..||. +++.+..+..+...+.+++|+ |++
T Consensus       224 ---------~----------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~  283 (326)
T 2ghs_A          224 ---------D----------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDA  283 (326)
T ss_dssp             ---------E----------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTS
T ss_pred             ---------E----------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCC
Confidence                     0          0001123457889999998887777788999998 677777777777779999998 888


Q ss_pred             CEEEEEeC
Q 011978          415 RLLLSGSK  422 (473)
Q Consensus       415 ~~l~s~s~  422 (473)
                      +.|+.++.
T Consensus       284 ~~L~vt~~  291 (326)
T 2ghs_A          284 SRLLVTSA  291 (326)
T ss_dssp             CEEEEEEB
T ss_pred             CEEEEEec
Confidence            77655443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.24  E-value=1.7e-09  Score=110.05  Aligned_cols=234  Identities=11%  Similarity=0.092  Sum_probs=138.9

Q ss_pred             CCCCCEEEEEECCCCCeEEEEe-----cCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC--
Q 011978          148 GHKNWVLCIAWSADGKHLVSGS-----KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--  220 (473)
Q Consensus       148 ~~~~~v~~l~~s~dg~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg--  220 (473)
                      +|...+..++|||||++|+.+.     ....|++||+.+++.....       +..+.+...... ++..|+.++.+.  
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-------~~~~k~~~~~Ws-Dg~~l~y~~~~~~~  197 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-------LKDVKFSGISWL-GNEGFFYSSYDKPD  197 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-------EEEEESCCCEEE-TTTEEEEEESSCCC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-------cCCceeccEEEe-CCCEEEEEEecCcc
Confidence            3556788899999999988432     2357999999998743221       222211122233 456677776663  


Q ss_pred             -----------cEEEEECCCCe----EEEEecC-ccccEEEEEecCCCe-E-EEee---cCCeEEEEECCCCc-eeeeee
Q 011978          221 -----------DARIWDVSLRK----CVICLSG-HTLAVTCVKWGGDGV-I-YTGS---QDCTIKVWETTQGK-LIRELK  278 (473)
Q Consensus       221 -----------~i~iwd~~~~~----~~~~~~~-h~~~v~~~~~~~~~~-l-~s~~---~d~~i~~wd~~~~~-~~~~~~  278 (473)
                                 .|++|++.+..    ++..... |......+.|++||. | ++.+   .++.|+++|+.++. ....  
T Consensus       198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~--  275 (693)
T 3iuj_A          198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT--  275 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE--
T ss_pred             cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE--
Confidence                       38999987653    3443334 455577888998884 3 3333   22467777765442 1111  


Q ss_pred             ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC
Q 011978          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG  358 (473)
Q Consensus       279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  358 (473)
                                                                                                   +..
T Consensus       276 -----------------------------------------------------------------------------l~~  278 (693)
T 3iuj_A          276 -----------------------------------------------------------------------------VQG  278 (693)
T ss_dssp             -----------------------------------------------------------------------------EEC
T ss_pred             -----------------------------------------------------------------------------EeC
Confidence                                                                                         111


Q ss_pred             cccceeEEEECCCCcEEEEEE-CC---CcEEEEeCCCCce--EEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEE
Q 011978          359 HQQLVNHVYFSPDGQWVASAS-FD---KSIKLWNGTTGKF--VAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVW  429 (473)
Q Consensus       359 ~~~~v~~v~~sp~g~~lasgs-~d---~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iw  429 (473)
                      +....... ++++|..|+..+ .+   +.|..+|+.++..  ...+..|...+.  .|++++++|+....++   .|++|
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence            11122222 445555444433 33   5788999887654  344555665554  8999999887776544   68999


Q ss_pred             ECCCCceeeccc-ccCCCEEEEEEeeCCCEEEEEeCC----CcEEecc
Q 011978          430 DIRTQKLKQDLP-GHADEVFAVDWSPDGEKVASGGKD----RVLKLWM  472 (473)
Q Consensus       430 d~~~~~~~~~~~-~h~~~i~~l~~s~d~~~l~s~~~D----~~i~~w~  472 (473)
                      |+..+.. ..+. .+...+..+.+++|++.|+....+    +++..|+
T Consensus       356 d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          356 DYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             CTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             ECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            9886543 3332 234457778888888877655443    5565553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.23  E-value=1.1e-09  Score=101.16  Aligned_cols=267  Identities=10%  Similarity=-0.001  Sum_probs=160.3

Q ss_pred             eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEeeCCCCccccccCCC-cC-----C
Q 011978          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNPLSG-HK-----K  194 (473)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-~~-----~  194 (473)
                      +|.+.|..+.+.+..+.....+  .+.++|||++++.+.          .++.|.+||+.+++.......+ ..     .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8889999999888777644455  799999999999886          3688999999998765432111 00     1


Q ss_pred             cEEEEEeceeccCCCCceEEEeeC--CCcEEE--EECCCCeEEEEec-CccccEEEEEecCCCeEEEeecCCeEEEEECC
Q 011978          195 WITGISWEPVHLNAPCRRFVSASK--DGDARI--WDVSLRKCVICLS-GHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT  269 (473)
Q Consensus       195 ~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~i--wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~  269 (473)
                      ....+.++     +++++++.+..  +..+.+  +|..+   +..+. +....   +...++..+++.+.|+.+.+.|+.
T Consensus       125 ~P~~ia~S-----pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~---~~p~g~~~~~~~~~dg~~~~vd~~  193 (368)
T 1mda_H          125 RVHIIGNC-----ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFH---IHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             CTTSEEEC-----TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCC---CEEEETTEEECCCCTTSCEEEECC
T ss_pred             CcceEEEc-----CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceE---EccCCCeEEEEEcCCCCEEEEECc
Confidence            11223333     46677777654  456888  88876   22221 11100   111222345666778888888877


Q ss_pred             C-----Cceeeee----eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          270 Q-----GKLIREL----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       270 ~-----~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      +     ++.....    .....+.   ..                                     .....++..+. +.
T Consensus       194 ~~~~~~~~v~~~~t~~i~vg~~P~---~~-------------------------------------~~~~~~~~vs~-~~  232 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQNCSSQAA---QA-------------------------------------NYPGMLVWAVA-SS  232 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBCSCCE---EE-------------------------------------TTTTEEEECBS-SC
T ss_pred             cccccCCeEEEEeeeeeeCCCCcc---cc-------------------------------------ccCCEEEEEcC-CE
Confidence            6     3322110    0000000   00                                     01122333333 67


Q ss_pred             EEEEeCCCCCCCe-eee---------cC-cccceeEEEECCCCcEEEEEEC---------CCcEEEEeCCCCceEEEeeC
Q 011978          341 MFLWEPAVSKQPK-TRM---------TG-HQQLVNHVYFSPDGQWVASASF---------DKSIKLWNGTTGKFVAVFRG  400 (473)
Q Consensus       341 i~iwd~~~~~~~~-~~~---------~~-~~~~v~~v~~sp~g~~lasgs~---------d~~v~lwd~~~~~~~~~~~~  400 (473)
                      +.+.|........ ...         .+ .......++|+||++.+..+..         ++.+.++|..+++.+..+..
T Consensus       233 V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v  312 (368)
T 1mda_H          233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN  312 (368)
T ss_dssp             CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred             EEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC
Confidence            7777764321110 000         00 0111223789999988876533         23566999999998887764


Q ss_pred             CccCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceeecccccCCCEEEEEEe
Q 011978          401 HVGPVYQISWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS  453 (473)
Q Consensus       401 h~~~v~~v~~sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s  453 (473)
                      .. ....++|+|||+ .+++.. .+++|.++|+.+++.+.+++.... -..+++.
T Consensus       313 g~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~  365 (368)
T 1mda_H          313 GH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ  365 (368)
T ss_dssp             EE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred             CC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence            43 578999999998 456666 599999999999999988875443 3355544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.23  E-value=4.5e-09  Score=95.53  Aligned_cols=228  Identities=8%  Similarity=0.025  Sum_probs=139.9

Q ss_pred             CcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978          107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (473)
Q Consensus       107 h~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  185 (473)
                      .........|+|+|+ .+++...++.|..|+....  ...+..+...+..++++++|+++++...++.|.+|+.+ ++..
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~--~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~  119 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT--VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH  119 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC--EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC--EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence            334566789999998 4566667899999998433  23344456678999999999866665566889999975 4421


Q ss_pred             ccc--CCCc-CCcEEEEEeceeccCCCCceEEE----eeC-------------CCcEEEEECCCCeEEEEecCccccEEE
Q 011978          186 GNP--LSGH-KKWITGISWEPVHLNAPCRRFVS----ASK-------------DGDARIWDVSLRKCVICLSGHTLAVTC  245 (473)
Q Consensus       186 ~~~--~~~~-~~~v~~i~~~~~~~~~~~~~~~s----~s~-------------dg~i~iwd~~~~~~~~~~~~h~~~v~~  245 (473)
                      ...  ..+. ...++.+.+.|     ++..+++    |..             .+.|..+|..+++.....  .......
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~-----dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~g  192 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVAR-----DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNG  192 (305)
T ss_dssp             EEECEETTEECSCCCCEEECT-----TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEE
T ss_pred             EEEeccCCCccCCCCCEEECC-----CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcc
Confidence            110  0110 11233444443     4455554    321             245666776555543332  3345677


Q ss_pred             EEecCCCe-EEEeecC------CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          246 VKWGGDGV-IYTGSQD------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       246 ~~~~~~~~-l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      ++|++++. |+.+...      +.|.+|++..+. +....                                        
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~----------------------------------------  231 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR----------------------------------------  231 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE----------------------------------------
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe----------------------------------------
Confidence            89999884 6666554      678888765432 11000                                        


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~  398 (473)
                                  .++           +.            .......++++++|++.++. .+ .|.+||. .++.+..+
T Consensus       232 ------------~~~-----------~~------------~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~  273 (305)
T 3dr2_A          232 ------------HFA-----------SV------------PDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHI  273 (305)
T ss_dssp             ------------EEE-----------CC------------SSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEE
T ss_pred             ------------EEE-----------EC------------CCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEE
Confidence                        000           00            01123457889999955544 44 4999998 57777777


Q ss_pred             eCCccCEEEEEEecCCCEEEEEeCCC
Q 011978          399 RGHVGPVYQISWSADSRLLLSGSKDS  424 (473)
Q Consensus       399 ~~h~~~v~~v~~sp~g~~l~s~s~Dg  424 (473)
                      ..+. .+.+++|+|+++.|..++.++
T Consensus       274 ~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          274 PTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             ECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             ECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence            6555 588899999998888877664

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.23  E-value=2.5e-11  Score=113.54  Aligned_cols=147  Identities=12%  Similarity=0.088  Sum_probs=80.2

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC-CcEE
Q 011978          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-KWIT  197 (473)
Q Consensus       119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~  197 (473)
                      ++..+++++.|+.|+.||..+++.+..+..  ..+.+..+..++..+++++.||.|+.||.++|+..... ..+. ..+ 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~~~~~~-   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFTIPELV-   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC-SCCHHHHH-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee-eccCcccc-
Confidence            578899999999999999999998887765  45555556677878888889999999999888753221 1110 000 


Q ss_pred             EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEec-CCCeEEEeecCCeEEEEECCCCceeee
Q 011978          198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLIRE  276 (473)
Q Consensus       198 ~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~  276 (473)
                        ...|..  .....+++++.++.+..||..+++.+..+..+..    ..+. .++.+++++.|+.|+.||..+|+.+..
T Consensus        84 --~~sp~~--~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           84 --QASPCR--SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             --TTCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             --ccCceE--ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence              001110  0234567788888899999988887766654431    1122 244677888888888888888876554


Q ss_pred             e
Q 011978          277 L  277 (473)
Q Consensus       277 ~  277 (473)
                      +
T Consensus       156 ~  156 (369)
T 2hz6_A          156 A  156 (369)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.23  E-value=2.7e-09  Score=97.03  Aligned_cols=250  Identities=15%  Similarity=0.144  Sum_probs=139.2

Q ss_pred             EEcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEE
Q 011978          145 KCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (473)
Q Consensus       145 ~~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~  223 (473)
                      .+...........|+|+|+ .+++...++.|..|+. +++..  .+..+...+.++.+.+     ++..+++...++.|.
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~--~~~~~~~~~~gl~~d~-----dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD--VLLDATAFTNGNAVDA-----QQRLVHCEHGRRAIT  110 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE--EEEESCSCEEEEEECT-----TSCEEEEETTTTEEE
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE--EEeCCCCccceeeECC-----CCCEEEEECCCCEEE
Confidence            3444556678899999998 5566667899999998 44422  2223445577777665     344444434457899


Q ss_pred             EEECCCCeEEEEec---Cc-cccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978          224 IWDVSLRKCVICLS---GH-TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (473)
Q Consensus       224 iwd~~~~~~~~~~~---~h-~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (473)
                      .||.. ++......   +. ...+..+.++++|.++..         |..-|... ...+..                  
T Consensus       111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t---------d~~~g~~~-~~~~~~------------------  161 (305)
T 3dr2_A          111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFT---------DPPFGLRK-PSQGCP------------------  161 (305)
T ss_dssp             EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEE---------CCSGGGSC-GGGSCC------------------
T ss_pred             EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEe---------CcCCCccc-cccccc------------------
Confidence            99876 44322111   11 122445666666544331         11000000 000000                  


Q ss_pred             ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE
Q 011978          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (473)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs  379 (473)
                                                      .......+.|+.+|......  ..+. .....+.++|+||++.|+.+.
T Consensus       162 --------------------------------~~~~~~~~~v~~~d~~~g~~--~~~~-~~~~p~gl~~spdg~~lyv~~  206 (305)
T 3dr2_A          162 --------------------------------ADPELAHHSVYRLPPDGSPL--QRMA-DLDHPNGLAFSPDEQTLYVSQ  206 (305)
T ss_dssp             --------------------------------CCCSSSCEEEEEECSSSCCC--EEEE-EESSEEEEEECTTSSEEEEEE
T ss_pred             --------------------------------cccccCCCeEEEEcCCCCcE--EEEe-cCCCCcceEEcCCCCEEEEEe
Confidence                                            00000012233333321111  1111 223457899999999887776


Q ss_pred             CC------CcEEEEeCCCCceE--EEe-eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEE
Q 011978          380 FD------KSIKLWNGTTGKFV--AVF-RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAV  450 (473)
Q Consensus       380 ~d------~~v~lwd~~~~~~~--~~~-~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l  450 (473)
                      ..      +.|++|++..+...  ..+ ....+....++++++|++.++. .+| |.+||.. ++.+..+..+. .+..+
T Consensus       207 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~~-g~~~~~~~~~~-~~~~~  282 (305)
T 3dr2_A          207 TPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDSD-GQLLGHIPTPG-TASNC  282 (305)
T ss_dssp             CCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEEECTT-SCEEEEEECSS-CCCEE
T ss_pred             cCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEEECCC-CCEEEEEECCC-ceeEE
Confidence            65      68999998755411  111 1123345678899999955544 454 9999984 55555555443 57889


Q ss_pred             EEeeCCCEEEEEeCCCcEEe
Q 011978          451 DWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       451 ~~s~d~~~l~s~~~D~~i~~  470 (473)
                      +|+|+++.|..++.++..++
T Consensus       283 ~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          283 TFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             EECTTSCEEEEEETTEEEEE
T ss_pred             EEeCCCCEEEEEcCCeEEEE
Confidence            99999998888887766555

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.20  E-value=2.4e-09  Score=100.62  Aligned_cols=264  Identities=14%  Similarity=0.044  Sum_probs=166.3

Q ss_pred             CCCCeEEEEecC-----CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEee----------CCCcEEE
Q 011978          160 ADGKHLVSGSKA-----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDGDARI  224 (473)
Q Consensus       160 ~dg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s----------~dg~i~i  224 (473)
                      ++++.++.....     +.|.++|..+++.......+. .+  .+.++|     +++++..+.          .++.|.+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~Sp-----Dgk~lyVan~~~~~~~~G~~~~~Vsv  153 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAE-----DGSFFAQASTVFERIARGKRTDYVEV  153 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECT-----TSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECC-----CCCEEEEEeccccccccCCCCCEEEE
Confidence            466766665442     699999999988765443332 22  666665     555565554          4678999


Q ss_pred             EECCCCeEEEEec-C-c-----cccEEEEEecCCC-eEEEeec--CCeEEEEECCCCceeeeeeccCceEEEEEecccce
Q 011978          225 WDVSLRKCVICLS-G-H-----TLAVTCVKWGGDG-VIYTGSQ--DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA  294 (473)
Q Consensus       225 wd~~~~~~~~~~~-~-h-----~~~v~~~~~~~~~-~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  294 (473)
                      +|..+++.+..+. + .     ......+.+++|| .++.+..  +++|.+.|..+++.+.++...+.    ....+.  
T Consensus       154 iD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~--  227 (426)
T 3c75_H          154 FDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPA--  227 (426)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEE--
T ss_pred             EECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccC--
Confidence            9999998876653 1 0     1123356788988 4666553  68999999999998877654321    111111  


Q ss_pred             eeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee----e-cCcccceeEEEEC
Q 011978          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR----M-TGHQQLVNHVYFS  369 (473)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~-~~~~~~v~~v~~s  369 (473)
                                                       ....+++.+.|+++.+.+.... .....    + .+.......+.|+
T Consensus       228 ---------------------------------g~~~~v~~~~dG~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~  273 (426)
T 3c75_H          228 ---------------------------------SPTVFYMNCRDGSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFS  273 (426)
T ss_dssp             ---------------------------------ETTEEEEEETTSSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEEC
T ss_pred             ---------------------------------CCcEEEEEcCCCCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeec
Confidence                                             0123445556676666665222 11110    0 0111112235789


Q ss_pred             CCCcEEEEEECCCcEEEEeCCCCceEE--EeeC----------CccCEEEEEEecCCCEEEEEeC----------CCcEE
Q 011978          370 PDGQWVASASFDKSIKLWNGTTGKFVA--VFRG----------HVGPVYQISWSADSRLLLSGSK----------DSTLK  427 (473)
Q Consensus       370 p~g~~lasgs~d~~v~lwd~~~~~~~~--~~~~----------h~~~v~~v~~sp~g~~l~s~s~----------Dg~i~  427 (473)
                      +++..++..+..+.|.+.|........  .+.-          .......++++||++.+++...          ++.|.
T Consensus       274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs  353 (426)
T 3c75_H          274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV  353 (426)
T ss_dssp             TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence            998888877888999999986554221  1110          0011123689999987776542          35799


Q ss_pred             EEECCCCceeecccccCCCEEEEEEeeCCC-EEEEEe-CCCcEEecc
Q 011978          428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGG-KDRVLKLWM  472 (473)
Q Consensus       428 iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~-~D~~i~~w~  472 (473)
                      ++|..+.+.+.++... ....++.|+|||+ +++++. .++.|.+++
T Consensus       354 VID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          354 VLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             EEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             EEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence            9999999998887643 2478999999999 888877 588888875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.18  E-value=7.8e-09  Score=96.96  Aligned_cols=262  Identities=12%  Similarity=0.054  Sum_probs=159.9

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEE
Q 011978          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG  198 (473)
Q Consensus       119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  198 (473)
                      ++..++.++.++.|..+|..+++.+...............  .+..++.++.++.|..+|..+|+........  ..+..
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~--~~~~~  177 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD--MPSLS  177 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC--C----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC--CCcee
Confidence            4567888889999999999999887665433221111122  2457888889999999999998754322111  00100


Q ss_pred             E--EeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcccc----------EEEEEecCCCeEEEeecCCeEEEE
Q 011978          199 I--SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA----------VTCVKWGGDGVIYTGSQDCTIKVW  266 (473)
Q Consensus       199 i--~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~----------v~~~~~~~~~~l~s~~~d~~i~~w  266 (473)
                      .  ...|..   ....++.++.++.+..+|..+++.+.........          +.......++.++.++.++.+..+
T Consensus       178 ~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~  254 (376)
T 3q7m_A          178 LRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL  254 (376)
T ss_dssp             -CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred             ecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence            0  001111   1346777888999999999999887655422100          100001125678888899999999


Q ss_pred             ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  346 (473)
                      |..+|+.+.......  ...+...                                      .+.++.++.++.+..+|.
T Consensus       255 d~~tG~~~w~~~~~~--~~~~~~~--------------------------------------~~~l~~~~~~g~l~~~d~  294 (376)
T 3q7m_A          255 DLRSGQIMWKRELGS--VNDFIVD--------------------------------------GNRIYLVDQNDRVMALTI  294 (376)
T ss_dssp             ETTTCCEEEEECCCC--EEEEEEE--------------------------------------TTEEEEEETTCCEEEEET
T ss_pred             ECCCCcEEeeccCCC--CCCceEE--------------------------------------CCEEEEEcCCCeEEEEEC
Confidence            999998776554221  1111111                                      235667777888888887


Q ss_pred             CCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcE
Q 011978          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTL  426 (473)
Q Consensus       347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i  426 (473)
                      ...+............+....+  .+..|+.++.+|.+..+|..+|+.+..++.....+...... .+..|+.++.||.|
T Consensus       295 ~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l  371 (376)
T 3q7m_A          295 DGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTV  371 (376)
T ss_dssp             TTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCE
T ss_pred             CCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEE
Confidence            6554322221111112222222  35678888999999999999999887776533333221111 24577788899999


Q ss_pred             EEEE
Q 011978          427 KVWD  430 (473)
Q Consensus       427 ~iwd  430 (473)
                      +.||
T Consensus       372 ~~~~  375 (376)
T 3q7m_A          372 YSIT  375 (376)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9986

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=5.4e-09  Score=105.44  Aligned_cols=295  Identities=14%  Similarity=0.126  Sum_probs=165.0

Q ss_pred             CCeEEEEecCCeEEEeeCCCCccccccCCCcCC---------cE-EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK---------WI-TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK  231 (473)
Q Consensus       162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~v-~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~  231 (473)
                      +..|+.++.++.|+.+|..+|+...........         .+ ..+.       ....+++.++.|+.+..+|..+++
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a-------~~~~~v~v~~~dg~l~alD~~tG~  149 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVA-------LWKGKVYVGAWDGRLIALDAATGK  149 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCE-------EETTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCce-------EECCEEEEEcCCCEEEEEECCCCC
Confidence            456777778889999999888765322111000         00 0011       123577888899999999999999


Q ss_pred             EEEEecCc-c----ccEEE-EEecCCCeEEEeec------CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978          232 CVICLSGH-T----LAVTC-VKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (473)
Q Consensus       232 ~~~~~~~h-~----~~v~~-~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (473)
                      .+..+..+ .    ..+.+ ... .++.++.++.      ++.|+.+|..+|+.+..+.............+.  ...+.
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~--~~~g~  226 (677)
T 1kb0_A          150 EVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES--MKRAA  226 (677)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH--HHHHH
T ss_pred             EEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc--ccccc
Confidence            88777644 1    11211 111 2456666553      799999999999988776542211000000000  00000


Q ss_pred             ccCCCcccCCHHHHHHHHHh--hhhccc-CCCCceEEEecCCc-------------------eEEEEeCCCCCCCeeeec
Q 011978          300 FDHTGKQYSSPEEMKKAALE--RYNKIK-GNAPERLVSGSDDF-------------------TMFLWEPAVSKQPKTRMT  357 (473)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~  357 (473)
                           ..+............  .+.... ......++.+..++                   .+..+|...++.......
T Consensus       227 -----~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~  301 (677)
T 1kb0_A          227 -----RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE  301 (677)
T ss_dssp             -----TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred             -----ccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence                 000000000000000  000000 00122333333332                   477777665543332222


Q ss_pred             C-cc-------cceeEEEECCCC---cEEEEEECCCcEEEEeCCCCceEEEeeCCc----------c-CE----------
Q 011978          358 G-HQ-------QLVNHVYFSPDG---QWVASASFDKSIKLWNGTTGKFVAVFRGHV----------G-PV----------  405 (473)
Q Consensus       358 ~-~~-------~~v~~v~~sp~g---~~lasgs~d~~v~lwd~~~~~~~~~~~~h~----------~-~v----------  405 (473)
                      . |.       .....+....+|   ..++.++.+|.++++|..+|+.+..++...          + ++          
T Consensus       302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~  381 (677)
T 1kb0_A          302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSK  381 (677)
T ss_dssp             STTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTS
T ss_pred             CCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCC
Confidence            1 21       112223334477   689999999999999999999876654211          0 11          


Q ss_pred             --------------EEEEEecCCCEEEEEeC-------------------------------------------CCcEEE
Q 011978          406 --------------YQISWSADSRLLLSGSK-------------------------------------------DSTLKV  428 (473)
Q Consensus       406 --------------~~v~~sp~g~~l~s~s~-------------------------------------------Dg~i~i  428 (473)
                                    ..++|+|++.++++...                                           .|.|..
T Consensus       382 ~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A  461 (677)
T 1kb0_A          382 PQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA  461 (677)
T ss_dssp             CEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEE
T ss_pred             ccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEE
Confidence                          14688999888877543                                           278999


Q ss_pred             EECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          429 WDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       429 wd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ||+.+++.+-..+ +...+....++.++..++.++.|+.+++|+
T Consensus       462 ~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          462 WDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             EETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             EeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence            9999998876654 333445556777888899999999999986

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.12  E-value=1.1e-10  Score=109.11  Aligned_cols=204  Identities=11%  Similarity=0.028  Sum_probs=113.3

Q ss_pred             CCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEE
Q 011978          209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL  287 (473)
Q Consensus       209 ~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~  287 (473)
                      ...++++++.|+.+..||..+++.+..+..  ..+.+..+..++ .+++++.|+.|+.||..+|+.+..+..+....   
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~---   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL---   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc---
Confidence            346788999999999999999999887765  334333334455 56777899999999998887765543221000   


Q ss_pred             EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEE
Q 011978          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY  367 (473)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~  367 (473)
                                                    .. ..... .....+++++.++.++.||...++..... ..+.    ...
T Consensus        83 ------------------------------~~-~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~-~~~~----~~~  125 (369)
T 2hz6_A           83 ------------------------------VQ-ASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTL-SSAF----ADS  125 (369)
T ss_dssp             ------------------------------HT-TCSCC------CCCCEEEEEEEEECCC--------------------
T ss_pred             ------------------------------cc-cCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEe-cCCC----ccc
Confidence                                          00 00000 01235677888999999998765543222 1111    245


Q ss_pred             ECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC---CEEEEEeCCCcEEEEECCCCceeecccccC
Q 011978          368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS---RLLLSGSKDSTLKVWDIRTQKLKQDLPGHA  444 (473)
Q Consensus       368 ~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~  444 (473)
                      ++|++..+++++.|+.|+.||..+|+.+..+..+.  .....++++.   ..+++++.||.|+.||..+++.+-...- .
T Consensus       126 ~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~  202 (369)
T 2hz6_A          126 LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-A  202 (369)
T ss_dssp             -------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-S
T ss_pred             ccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-C
Confidence            67788999999999999999999998765543221  1223333332   5677788999999999999887655442 3


Q ss_pred             CCEEE-EEEeeCCC
Q 011978          445 DEVFA-VDWSPDGE  457 (473)
Q Consensus       445 ~~i~~-l~~s~d~~  457 (473)
                      .++.. ..+++||.
T Consensus       203 ~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          203 SPVVAFYVWQREGL  216 (369)
T ss_dssp             SCEEEEEECTTSSC
T ss_pred             CceEEEEEecCCce
Confidence            34433 34455654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.08  E-value=1.7e-08  Score=101.74  Aligned_cols=314  Identities=13%  Similarity=0.124  Sum_probs=178.1

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC----------E-EEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~----------v-~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      +..|+.++.++.|.-+|..+++.+.........          + ..+++  ++..++.++.|+.|..+|..+|+.....
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            566777888999999999999988776432210          0 11222  3567888899999999999999865432


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeEEEEecC---ccc------------------
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSG---HTL------------------  241 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~~~~~~~---h~~------------------  241 (473)
                      ..........+...|..   ....++.+..      ++.|..+|..+++.+..+..   ...                  
T Consensus       144 ~~~~~~~~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  220 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD  220 (668)
T ss_dssp             ECSCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred             ccCCCCCcceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence            11110000000011111   1234444433      58999999999998876632   100                  


Q ss_pred             ----------cEEEEEecCC-CeEEEeecCC-------------------eEEEEECCCCceeeeeeccCceEEEEEecc
Q 011978          242 ----------AVTCVKWGGD-GVIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGHWVNSLALST  291 (473)
Q Consensus       242 ----------~v~~~~~~~~-~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  291 (473)
                                ....++++++ +.++.+..++                   .|.-+|..+|+.+..++...+.........
T Consensus       221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~  300 (668)
T 1kv9_A          221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ  300 (668)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence                      0012456553 5677776665                   488999999998877654211100000000


Q ss_pred             cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc------------
Q 011978          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH------------  359 (473)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------  359 (473)
                      ...+....                        ..+.....++.++.++.++++|...++.........            
T Consensus       301 ~~~~~d~~------------------------~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g  356 (668)
T 1kv9_A          301 QITLAELN------------------------IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (668)
T ss_dssp             CEEEEEEE------------------------ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CcEEEEec------------------------cCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence            00000000                        000011247778888888888876554221000000            


Q ss_pred             ------------c-----------cceeEEEECCCCcEEEEEE------------------------------------C
Q 011978          360 ------------Q-----------QLVNHVYFSPDGQWVASAS------------------------------------F  380 (473)
Q Consensus       360 ------------~-----------~~v~~v~~sp~g~~lasgs------------------------------------~  380 (473)
                                  .           ..-..++++|+..++....                                    .
T Consensus       357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~  436 (668)
T 1kv9_A          357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (668)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence                        0           0011267888766655421                                    2


Q ss_pred             CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC-EEEEEEeeCCC-E
Q 011978          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE-VFAVDWSPDGE-K  458 (473)
Q Consensus       381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~~s~d~~-~  458 (473)
                      +|.|..||..+|+.+-.++.+. +.....+...+.+++.++.||.++.||.++++.+..+.....- -.-+.+..+|+ +
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y  515 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence            3789999999999876665432 3333445567788899999999999999999887655433211 12234566777 4


Q ss_pred             EEEEe
Q 011978          459 VASGG  463 (473)
Q Consensus       459 l~s~~  463 (473)
                      ++.++
T Consensus       516 va~~~  520 (668)
T 1kv9_A          516 VAIMA  520 (668)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.08  E-value=2.7e-06  Score=88.02  Aligned_cols=307  Identities=11%  Similarity=0.109  Sum_probs=189.6

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~  189 (473)
                      |.++...+++...+ ++.++.+..||..+++.... ...+...|.++...++|. |..|+.++-+..||..+++......
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~  252 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLH  252 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeec
Confidence            88888888886555 55555688899876543211 112345688888877775 5555555558899987764322111


Q ss_pred             C------CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC-------ccccEEEEEecCCCeEEE
Q 011978          190 S------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCVKWGGDGVIYT  256 (473)
Q Consensus       190 ~------~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~l~s  256 (473)
                      .      -....|.++...+      ...+..|+.+ -+.+||..++........       ....|.++..+.+|.|..
T Consensus       253 ~~~~~~~l~~~~i~~i~~d~------~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi  325 (795)
T 4a2l_A          253 SPSNPKSISSNYIRSLAMDS------QNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL  325 (795)
T ss_dssp             CTTCTTSCSCSBEEEEEECT------TSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE
T ss_pred             CCCCccccCCCeEEEEEEcC------CCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE
Confidence            1      1134566665432      2345556655 588899887765543221       235699999999999999


Q ss_pred             eecCCeEEEEECCCCceeeeeec------cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978          257 GSQDCTIKVWETTQGKLIRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (473)
                      |+.++-|..|+..++........      ....|.++....                                     ..
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-------------------------------------~g  368 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-------------------------------------DK  368 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-------------------------------------TS
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-------------------------------------CC
Confidence            99989999998765543221110      122244443222                                     23


Q ss_pred             eEEEecCCceEEEEeCCCCCCCeeee-------cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee----
Q 011978          331 RLVSGSDDFTMFLWEPAVSKQPKTRM-------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR----  399 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~----  399 (473)
                      .+..|+.++-+..|+...........       .-....|.+++..++|+.|..|+.++-|..||..+++......    
T Consensus       369 ~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~  448 (795)
T 4a2l_A          369 NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ  448 (795)
T ss_dssp             CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC
T ss_pred             CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC
Confidence            46677777778888865332111110       0123568999999999866667777779999998876543321    


Q ss_pred             CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc------ccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          400 GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP------GHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       400 ~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~------~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      .....|.++...++|++.+... + -+.+||..+++......      -....|.++...++|+..+... +|
T Consensus       449 l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G  518 (795)
T 4a2l_A          449 LVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG  518 (795)
T ss_dssp             CSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC
T ss_pred             cCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc
Confidence            1345799999888888665543 4 48999988765432211      1235789998888887665544 44

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.06  E-value=1.2e-06  Score=90.64  Aligned_cols=307  Identities=10%  Similarity=0.092  Sum_probs=186.2

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCC-CCC-EEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNW-VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~-~~~-v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      |.++...++|...+.. . +.+..||..+++........ ... |.++...++|. |..++.++.|..|+..+++.....
T Consensus       133 i~~i~~d~~g~lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~  209 (795)
T 4a2l_A          133 VNGIEEISPEQLLIST-P-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQ-IYIGTSTDGLYTYSITQKTFEKVI  209 (795)
T ss_dssp             CCEEEEEETTEEEEEE-T-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTE-EEEEESSSCEEEEETTTCCEEECC
T ss_pred             EEEEEECCCCCEEEEE-C-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCC-EEEEECCCCEEEEeCCCCeEEEec
Confidence            8888888888765543 3 55888998765321100000 113 88888887775 445666656889998776533221


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC-------ccccEEEEEecCCCeEEEeecCC
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCVKWGGDGVIYTGSQDC  261 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~l~s~~~d~  261 (473)
                      .......|.++...+     . ..+..++.++-+..||..+++.......       ....|.++...++|.+..|+.+ 
T Consensus       210 ~~~~~~~i~~i~~d~-----~-g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-  282 (795)
T 4a2l_A          210 PILGTKQIQAILQQS-----P-TRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-  282 (795)
T ss_dssp             ----CCCEEEEEEEE-----T-TEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-
T ss_pred             CCCCCCeeEEEEEcC-----C-CCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-
Confidence            112234566655332     1 3455566555688999887765443222       1356899999888988888866 


Q ss_pred             eEEEEECCCCceeeeeec-------cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          262 TIKVWETTQGKLIRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      .|.+||..+++.......       ....|.++....                                     ...+..
T Consensus       283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-------------------------------------~g~lWi  325 (795)
T 4a2l_A          283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-------------------------------------QGGMWL  325 (795)
T ss_dssp             CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-------------------------------------TSCEEE
T ss_pred             hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-------------------------------------CcCEEE
Confidence            688899877654332111       112344443322                                     234666


Q ss_pred             ecCCceEEEEeCCCCCCCeeee-----cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC--------C
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG--------H  401 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~--------h  401 (473)
                      |+.++-+..++...........     .-....|.+++..++|.+. .|+.++-|..||..+++.......        .
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~  404 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIG  404 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence            7777777777753321111000     0123468999999988754 467777799999887765433211        2


Q ss_pred             ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc----ccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP----GHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      ...|.++...++|+.|-.|+.++-|..||..+++...-..    .....|.++...++|+..+... +|
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G  472 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA  472 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc
Confidence            3579999998898845567777779999998765432211    1245789998888887555443 44

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.05  E-value=3.8e-08  Score=99.51  Aligned_cols=300  Identities=12%  Similarity=0.058  Sum_probs=161.9

Q ss_pred             CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcE---EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC
Q 011978          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI---TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (473)
Q Consensus       162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v---~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~  238 (473)
                      +..|+.++.++.|+.+|..+|+..-..........   .+.............+++.++.|+.+.-+|..+++.+..+..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~  149 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT  149 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence            55778888889999999998886543211100000   000000000001235778888999999999999998876543


Q ss_pred             c--c---ccEEE-EEecCCCeEEEee------cCCeEEEEECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCc
Q 011978          239 H--T---LAVTC-VKWGGDGVIYTGS------QDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGK  305 (473)
Q Consensus       239 h--~---~~v~~-~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~  305 (473)
                      .  .   ..+.+ ..+ .++.++.+.      .++.|+.||..+|+.+..+.... .+..  .+... .+........+.
T Consensus       150 ~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~--~~~~~-~~~~~~~~~~g~  225 (689)
T 1yiq_A          150 RADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKL--PPEGK-GMEIAAKTWFGD  225 (689)
T ss_dssp             CSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS--CCCSH-HHHHHHTTCCSS
T ss_pred             cCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccc--ccccc-cccccccccCCc
Confidence            2  1   11111 011 156666554      37899999999999887664210 0000  00000 000000000000


Q ss_pred             ccCCHHHHHHHHHh---hhhcc-cCCCCceEEEecCCc-------------------eEEEEeCCCCCCCeeeecC-cc-
Q 011978          306 QYSSPEEMKKAALE---RYNKI-KGNAPERLVSGSDDF-------------------TMFLWEPAVSKQPKTRMTG-HQ-  360 (473)
Q Consensus       306 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~-~~-  360 (473)
                      .+       .....   .+... .......++.++.++                   .+..+|...++........ |. 
T Consensus       226 ~w-------~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~  298 (689)
T 1yiq_A          226 AY-------VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA  298 (689)
T ss_dssp             TH-------HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC
T ss_pred             ee-------eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc
Confidence            00       00000   00000 000123444554443                   3788887765543322221 21 


Q ss_pred             ------cceeEEEECCCCc---EEEEEECCCcEEEEeCCCCceEEEeeCCc-cC--------------------------
Q 011978          361 ------QLVNHVYFSPDGQ---WVASASFDKSIKLWNGTTGKFVAVFRGHV-GP--------------------------  404 (473)
Q Consensus       361 ------~~v~~v~~sp~g~---~lasgs~d~~v~lwd~~~~~~~~~~~~h~-~~--------------------------  404 (473)
                            ..........+|+   .++.++.+|.++++|..+|+++...+... ..                          
T Consensus       299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~  378 (689)
T 1yiq_A          299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR  378 (689)
T ss_dssp             SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred             ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence                  1111122223565   78999999999999999999874332110 00                          


Q ss_pred             ------------EEEEEEecCCCEEEEEeC---------------------------------------------CCcEE
Q 011978          405 ------------VYQISWSADSRLLLSGSK---------------------------------------------DSTLK  427 (473)
Q Consensus       405 ------------v~~v~~sp~g~~l~s~s~---------------------------------------------Dg~i~  427 (473)
                                  -..++|+|+..++++.+.                                             +|.|+
T Consensus       379 ~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~  458 (689)
T 1yiq_A          379 NLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI  458 (689)
T ss_dssp             EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred             eEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence                        012688898887776532                                             37799


Q ss_pred             EEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978          428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       428 iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      .||+.+++.+-..+.+. .+..-.++..+..++.++.|+.++.|++
T Consensus       459 A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          459 AWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             EEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             EEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence            99999998876665443 3334456778889999999999999863

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.92  E-value=2.9e-08  Score=91.05  Aligned_cols=265  Identities=14%  Similarity=0.058  Sum_probs=154.4

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  188 (473)
                      ..+.++...++|... .++.+  +..+|. ++..+..............+.  +..|..++.++.|..+|.. ++.....
T Consensus        60 ~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~  132 (330)
T 3hxj_A           60 IIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRF  132 (330)
T ss_dssp             EEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred             CcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence            345677777777644 34444  888886 444332222222212222232  4568888889999999987 5543211


Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEEC
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET  268 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~  268 (473)
                       ......+..+..      .....+..++.++.+..+|.. ++....+......+.++...+++.++.++  +.+..+| 
T Consensus       133 -~~~~~~~~~~~~------~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-  201 (330)
T 3hxj_A          133 -KTKKAIYATPIV------SEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-  201 (330)
T ss_dssp             -ECSSCCCSCCEE------CTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-
T ss_pred             -cCCCceeeeeEE------cCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-
Confidence             111111111111      113457778888999999998 77666555444556667777778777777  8899999 


Q ss_pred             CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCC
Q 011978          269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (473)
Q Consensus       269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  348 (473)
                      .+++...........+.++...                                     ....+..++.++.+..++...
T Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~-------------------------------------~~g~l~v~t~~~gl~~~~~~g  244 (330)
T 3hxj_A          202 PDGTEKWNFYAGYWTVTRPAIS-------------------------------------EDGTIYVTSLDGHLYAINPDG  244 (330)
T ss_dssp             TTSCEEEEECCSSCCCSCCEEC-------------------------------------TTSCEEEEETTTEEEEECTTS
T ss_pred             CCCcEEEEEccCCcceeceEEC-------------------------------------CCCeEEEEcCCCeEEEECCCC
Confidence            7776655443322222222111                                     122466677777777776422


Q ss_pred             CCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEE
Q 011978          349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKV  428 (473)
Q Consensus       349 ~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~i  428 (473)
                       . ...........+.++.+.+++. |..++.++.|..+|. +++.+..+......+.++...++|++ ..++.+|.+++
T Consensus       245 -~-~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~  319 (330)
T 3hxj_A          245 -T-EKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYA  319 (330)
T ss_dssp             -C-EEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEE
T ss_pred             -C-EeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEE
Confidence             1 1222222223344556666665 666778888999996 67777666655556677777777764 55788999998


Q ss_pred             EECCC
Q 011978          429 WDIRT  433 (473)
Q Consensus       429 wd~~~  433 (473)
                      .....
T Consensus       320 ~~~~~  324 (330)
T 3hxj_A          320 LFNLE  324 (330)
T ss_dssp             EEC--
T ss_pred             Eeccc
Confidence            87654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.90  E-value=7.7e-08  Score=88.88  Aligned_cols=199  Identities=14%  Similarity=0.067  Sum_probs=116.6

Q ss_pred             cEEEEEeceeccCCCCceEEEee--CCCcEEEEECCCCeEEEEe-------cCccccEEEEEecCCCeEEEeec------
Q 011978          195 WITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICL-------SGHTLAVTCVKWGGDGVIYTGSQ------  259 (473)
Q Consensus       195 ~v~~i~~~~~~~~~~~~~~~s~s--~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~l~s~~~------  259 (473)
                      ...++++.|     +++.|++..  .++.++||.+..++.. .+       .+|...+..+++++++.|+....      
T Consensus        18 ~p~~va~~~-----~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           18 APGNITLTP-----DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKS   91 (343)
T ss_dssp             CEEEEEECT-----TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTS
T ss_pred             CcceEEECC-----CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCC
Confidence            455555544     445666643  2343455554444432 22       23556789999999887666543      


Q ss_pred             CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  339 (473)
                      ++.|.+||+.+++.++.+.....                                                         
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~---------------------------------------------------------  114 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPP---------------------------------------------------------  114 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTT---------------------------------------------------------
T ss_pred             CCeEEEEECCCCeEEEEEECChh---------------------------------------------------------
Confidence            57899999988876554321100                                                         


Q ss_pred             eEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEE---CCCcEEEEeCCCCceEEEeeCCc-------------
Q 011978          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASAS---FDKSIKLWNGTTGKFVAVFRGHV-------------  402 (473)
Q Consensus       340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs---~d~~v~lwd~~~~~~~~~~~~h~-------------  402 (473)
                                .      ..+...+..++++|++ ...++.+   .++.|.+||..+++....+.+|.             
T Consensus       115 ----------~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g  178 (343)
T 2qe8_A          115 ----------I------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDG  178 (343)
T ss_dssp             ----------T------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETT
T ss_pred             ----------h------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECC
Confidence                      0      0011224556777643 3334433   45677777777666555443321             


Q ss_pred             ----------------cCEEEEEEecCCCEEEEEeCCC-cEEEEECC---CCc-----eeec--ccccCCCEEEEEEeeC
Q 011978          403 ----------------GPVYQISWSADSRLLLSGSKDS-TLKVWDIR---TQK-----LKQD--LPGHADEVFAVDWSPD  455 (473)
Q Consensus       403 ----------------~~v~~v~~sp~g~~l~s~s~Dg-~i~iwd~~---~~~-----~~~~--~~~h~~~i~~l~~s~d  455 (473)
                                      ..++.++|+|||+.|+.+..++ .++.++..   .+.     ....  ..++......++++++
T Consensus       179 ~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~  258 (343)
T 2qe8_A          179 VPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD  258 (343)
T ss_dssp             EECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT
T ss_pred             EEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC
Confidence                            2368899999999998888776 44444421   110     0011  1123334557899999


Q ss_pred             CCEEEEEeCCCcEEecc
Q 011978          456 GEKVASGGKDRVLKLWM  472 (473)
Q Consensus       456 ~~~l~s~~~D~~i~~w~  472 (473)
                      |+.+++...++.|.+|+
T Consensus       259 G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          259 HNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             CCEEEEEGGGTEEEEEE
T ss_pred             CCEEEEccCCCeEEEEE
Confidence            99999988899999885

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.89  E-value=1.3e-07  Score=87.25  Aligned_cols=244  Identities=11%  Similarity=0.019  Sum_probs=142.3

Q ss_pred             EEEECCCCCeEEEEe----------CCCeEEEEeCCCCceeEEEcCC-------CCCEEEEEECCCCCeEEEEec--CCe
Q 011978          113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK--AGE  173 (473)
Q Consensus       113 ~~~~sp~~~~lat~s----------~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~s~dg~~l~s~~~--dg~  173 (473)
                      .++|+|||++++.+.          .+++|.+||..+.+.+..+..+       ...-..++|+|||++|+.+..  ++.
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            699999999998886          3789999999999887776422       122457899999999998875  467


Q ss_pred             EEE--eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-----CeEEEE----ecCcccc
Q 011978          174 LQC--WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVIC----LSGHTLA  242 (473)
Q Consensus       174 i~i--wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-----~~~~~~----~~~h~~~  242 (473)
                      +.+  +|..+-+  .....+.      ....|.    ....+++.+.|+.+.+.|+.+     ++....    +.-...+
T Consensus       149 v~V~~iD~~tv~--~i~v~~~------~~~~p~----g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P  216 (368)
T 1mda_H          149 AGLSVPGASDDQ--LTKSASC------FHIHPG----AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA  216 (368)
T ss_dssp             EEEEETTTEEEE--EEECSSC------CCCEEE----ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred             EEEEEEchhhce--EEECCCc------eEEccC----CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence            888  9986611  1111110      001121    123566777888888888876     432211    0001112


Q ss_pred             EEEEEecCCCeEEEeecCCeEEEEECCCCc--eeeeeecc------CceE----EEEEecccceeeeccccCCCcccCCH
Q 011978          243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGK--LIRELKGH------GHWV----NSLALSTEYALRTGAFDHTGKQYSSP  310 (473)
Q Consensus       243 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~------~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (473)
                      .   ....++.++..+. +.+.+.|...+.  .+..+...      ..+.    ..++++++                  
T Consensus       217 ~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d------------------  274 (368)
T 1mda_H          217 A---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN------------------  274 (368)
T ss_dssp             E---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT------------------
T ss_pred             c---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC------------------
Confidence            2   2334455555555 889888886432  22211100      0000    00112211                  


Q ss_pred             HHHHHHHHhhhhcccCCCCceEE-Eec---C-----CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEE-
Q 011978          311 EEMKKAALERYNKIKGNAPERLV-SGS---D-----DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-  379 (473)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~-~~~---~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs-  379 (473)
                                        ..+++ +..   .     +..+.++|....+.......+.  ....++|+|||+ ++++.. 
T Consensus       275 ------------------g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~  334 (368)
T 1mda_H          275 ------------------TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             ------------------TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEET
T ss_pred             ------------------CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccC
Confidence                              12233 222   1     2345599987654333222222  578899999998 556666 


Q ss_pred             CCCcEEEEeCCCCceEEEeeCCccCEEEEEEe
Q 011978          380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS  411 (473)
Q Consensus       380 ~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s  411 (473)
                      .+++|.++|..+++.+..+..... ...+++.
T Consensus       335 ~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~  365 (368)
T 1mda_H          335 GTEVLDIYDAASDQDQSSVELDKG-PESLSVQ  365 (368)
T ss_dssp             TTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred             CCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence            589999999999999988875543 2344443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=4.6e-05  Score=78.58  Aligned_cols=313  Identities=12%  Similarity=0.073  Sum_probs=184.1

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-------CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      ..|.++...++|.+.+.. .+ -+.+||..++.......       -....|.++...++|. |..|+..+-|.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence            468999999888765543 44 68889987654221110       1245699999988775 55666656788898876


Q ss_pred             CccccccC-------------CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--------C-c
Q 011978          182 GKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--------G-H  239 (473)
Q Consensus       182 ~~~~~~~~-------------~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--------~-h  239 (473)
                      +.......             .-....|.++...+      ...+-.|+.++-|..++...........        + .
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~  361 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS------FNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS  361 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECS------SCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC------CCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence            54221100             11234466654332      2345567767778888876554332210        1 2


Q ss_pred             cccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeee---eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHH
Q 011978          240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (473)
Q Consensus       240 ~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (473)
                      ...|.++...+++.|..|+.++-|..||..+++.....   ......|.++....                         
T Consensus       362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-------------------------  416 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-------------------------  416 (781)
T ss_dssp             SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-------------------------
T ss_pred             CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-------------------------
Confidence            34688998888898999988888999997655432211   01122334433221                         


Q ss_pred             HHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee-cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE
Q 011978          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (473)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~  395 (473)
                                  ...+..|+.++-+..++........... ......|.++...++|.+.+. +. +-+..+|..+++..
T Consensus       417 ------------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~  482 (781)
T 3v9f_A          417 ------------EGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVI  482 (781)
T ss_dssp             ------------TSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCC
T ss_pred             ------------CCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEE
Confidence                        2346667766677888764322111000 113456889999988875554 44 45888998877654


Q ss_pred             EEeeCC-----ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc--cc-cCCCEEEEEEeeCCCEEEEEeCCCc
Q 011978          396 AVFRGH-----VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL--PG-HADEVFAVDWSPDGEKVASGGKDRV  467 (473)
Q Consensus       396 ~~~~~h-----~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~-h~~~i~~l~~s~d~~~l~s~~~D~~  467 (473)
                      ......     ...|.++...++|++.+.. .++-+..||..+++...-.  .+ ....|.++...++|+..++.. +|.
T Consensus       483 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Gl  560 (781)
T 3v9f_A          483 HHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGL  560 (781)
T ss_dssp             EEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEE
T ss_pred             ecccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCc
Confidence            333222     3579999999988866544 4344888988766543211  11 235688998888887655443 555


Q ss_pred             EEec
Q 011978          468 LKLW  471 (473)
Q Consensus       468 i~~w  471 (473)
                      +..|
T Consensus       561 v~~~  564 (781)
T 3v9f_A          561 VCFP  564 (781)
T ss_dssp             EEES
T ss_pred             eEEE
Confidence            3444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.81  E-value=1.6e-06  Score=85.55  Aligned_cols=313  Identities=14%  Similarity=0.101  Sum_probs=170.3

Q ss_pred             CCeEEEEeC-CCeEEEEeC-CCCceeEEEcCCCCC-----------EEEEEECCCCCe----EEEEecCCeEEEeeCCCC
Q 011978          120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKNW-----------VLCIAWSADGKH----LVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       120 ~~~lat~s~-d~~i~iwd~-~~~~~~~~~~~~~~~-----------v~~l~~s~dg~~----l~s~~~dg~i~iwd~~~~  182 (473)
                      +..|+.++. ++.|.-+|. .+++.+.+.......           ...++++|.+..    |+.++.|+.|..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            556777777 889999999 899888766432210           122455444445    888899999999999999


Q ss_pred             cccccc-CCCcCCcEEEEEeceeccCCCCceEEEee------CCCcEEEEECCCCeEEEEecCcccc-------------
Q 011978          183 KPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSGHTLA-------------  242 (473)
Q Consensus       183 ~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s------~dg~i~iwd~~~~~~~~~~~~h~~~-------------  242 (473)
                      +..... ...+... ..+.-.|..   ....++.++      .++.|.-+|..+++.+..+......             
T Consensus       142 ~~~W~~~~~~~~~~-~~~~ssP~v---~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~  217 (599)
T 1w6s_A          142 ETVWKVENSDIKVG-STLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (599)
T ss_dssp             CEEEEEECCCGGGT-CBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CEEEeecCCCCCcc-ceeecCCEE---ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence            865322 1111000 000111111   113455544      3799999999999988665422110             


Q ss_pred             ------------------------EE-EEEecC-CCeEEEeecC----------------CeEEEEECCCCceeeeeecc
Q 011978          243 ------------------------VT-CVKWGG-DGVIYTGSQD----------------CTIKVWETTQGKLIRELKGH  280 (473)
Q Consensus       243 ------------------------v~-~~~~~~-~~~l~s~~~d----------------~~i~~wd~~~~~~~~~~~~~  280 (473)
                                              +. ..++++ .+.++.+..+                +.|.-+|..+|+.+..++..
T Consensus       218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~  297 (599)
T 1w6s_A          218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT  297 (599)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred             ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence                                    00 123333 3566666544                47888999999888766542


Q ss_pred             CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-
Q 011978          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-  359 (473)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-  359 (473)
                      .+..........-.+    .+.                   ....+.....++.++.++.++..|....+......... 
T Consensus       298 ~~d~wd~d~~~~p~l----~d~-------------------~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~  354 (599)
T 1w6s_A          298 PHDEWDYAGVNVMML----SEQ-------------------KDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT  354 (599)
T ss_dssp             TTCSSCCCCCCCCEE----EEE-------------------ECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             CCccccccCCCccEE----Eec-------------------cccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCC
Confidence            211100000000000    000                   00000001235667788888888865543221111000 


Q ss_pred             -----------cc--------------------------ceeEEEECCCCcEEEEEE-----------------------
Q 011978          360 -----------QQ--------------------------LVNHVYFSPDGQWVASAS-----------------------  379 (473)
Q Consensus       360 -----------~~--------------------------~v~~v~~sp~g~~lasgs-----------------------  379 (473)
                                 ..                          .-..++|+|+..++.+..                       
T Consensus       355 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  434 (599)
T 1w6s_A          355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA  434 (599)
T ss_dssp             CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             cccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecc
Confidence                       00                          012456777766655431                       


Q ss_pred             ----------------CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc
Q 011978          380 ----------------FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH  443 (473)
Q Consensus       380 ----------------~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h  443 (473)
                                      .+|.|..||+.+|+.+-..+.. .+...-.....+.+++.++.||.++.||.++++.+-++.-.
T Consensus       435 ~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence                            3468899999999877665421 11111112335667778999999999999999987554322


Q ss_pred             CC-CEEEEEEeeCCCEEE
Q 011978          444 AD-EVFAVDWSPDGEKVA  460 (473)
Q Consensus       444 ~~-~i~~l~~s~d~~~l~  460 (473)
                      .. ...-+.|..||+.++
T Consensus       514 ~g~~~~P~~y~~~G~qyv  531 (599)
T 1w6s_A          514 SGAIGYPMTYTHKGTQYV  531 (599)
T ss_dssp             SCCCSCCEEEEETTEEEE
T ss_pred             CCcEeccEEEEeCCEEEE
Confidence            21 112355677887443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.81  E-value=4.3e-06  Score=77.82  Aligned_cols=239  Identities=13%  Similarity=0.137  Sum_probs=136.2

Q ss_pred             CCCCeEEE-EeCCCeEEEEeCCCC----ceeEEEc-------CCCCCEEEEEECCCCCeEEEEecC------CeEEEeeC
Q 011978          118 PDGRQLAS-GSGDTTVRLWDLNTQ----TPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKA------GELQCWDP  179 (473)
Q Consensus       118 p~~~~lat-~s~d~~i~iwd~~~~----~~~~~~~-------~~~~~v~~l~~s~dg~~l~s~~~d------g~i~iwd~  179 (473)
                      +++++|+. +..++.|.|+|+.+.    +......       .....-..+..+|+| .++++..+      |.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            88888765 457889999999754    2222221       011134557788999 66665544      78999999


Q ss_pred             CCCccccccCCC-cC-CcEEEEEeceeccCCCCceEEEee-------------------CCCcEEEEECCCCeEEEEecC
Q 011978          180 QTGKPSGNPLSG-HK-KWITGISWEPVHLNAPCRRFVSAS-------------------KDGDARIWDVSLRKCVICLSG  238 (473)
Q Consensus       180 ~~~~~~~~~~~~-~~-~~v~~i~~~~~~~~~~~~~~~s~s-------------------~dg~i~iwd~~~~~~~~~~~~  238 (473)
                      .+++.......+ .. ..-..+.|+|     +.+.+++..                   .+.+|.+||+.+++.+.++.-
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p-----~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNL-----PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEET-----TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             CCCeEEEEEccCCCCccccceEEECC-----CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            988765443222 11 1112244444     345666663                   368999999999887766643


Q ss_pred             c--cccEEEEEe--cCCCe-EE-Eee-----cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCccc
Q 011978          239 H--TLAVTCVKW--GGDGV-IY-TGS-----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY  307 (473)
Q Consensus       239 h--~~~v~~~~~--~~~~~-l~-s~~-----~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  307 (473)
                      .  ......+.|  ++++. ++ ++.     .+++|.+|....|+...        +..+.+....      .       
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~--------~~vIdi~~~~------v-------  305 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA--------EKVIEIPAEP------L-------  305 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE--------EEEEEECCEE------C-------
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE--------EEEEeCCCcc------c-------
Confidence            2  123344555  88873 44 444     66788887654432210        0001110000      0       


Q ss_pred             CCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEE
Q 011978          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKL  386 (473)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~l  386 (473)
                                                    .+     .+  ...+ ..+.+-......|.+||||++|.++.. .+.|.+
T Consensus       306 ------------------------------~~-----~l--p~~~-~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vav  347 (462)
T 2ece_A          306 ------------------------------EG-----NL--PEIL-KPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQ  347 (462)
T ss_dssp             ------------------------------CS-----SC--CGGG-GGGTEECCCCCCEEECTTSCEEEEEETTTTEEEE
T ss_pred             ------------------------------cc-----cc--cccc-cccccCCCceeEEEECCCCCEEEEEeCCCCEEEE
Confidence                                          00     00  0000 000000123567899999999988765 578999


Q ss_pred             EeCCC---CceEEEeeCC-----------c---cCEEEEEEecCCCEEEEEe
Q 011978          387 WNGTT---GKFVAVFRGH-----------V---GPVYQISWSADSRLLLSGS  421 (473)
Q Consensus       387 wd~~~---~~~~~~~~~h-----------~---~~v~~v~~sp~g~~l~s~s  421 (473)
                      ||+..   .+.+..+.-.           .   +.-..++++|||++|+++.
T Consensus       348 fdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          348 YDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99853   3444444321           0   1247799999999999887

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.80  E-value=8.8e-07  Score=87.38  Aligned_cols=311  Identities=14%  Similarity=0.082  Sum_probs=170.6

Q ss_pred             CCeEEEEeC-CCeEEEEeC-CCCceeEEEcCCCC----------CE-EEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978          120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKN----------WV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (473)
Q Consensus       120 ~~~lat~s~-d~~i~iwd~-~~~~~~~~~~~~~~----------~v-~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~  186 (473)
                      +..++.++. ++.|.-+|. .+++.+........          .+ ..++.  ++..++.++.|+.+..+|..+|+...
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            556666677 889999999 89988776542211          00 11222  35678888899999999999998653


Q ss_pred             cc-CCCcCCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeEEEEecCcccc-----------------
Q 011978          187 NP-LSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLA-----------------  242 (473)
Q Consensus       187 ~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~~~~~~~h~~~-----------------  242 (473)
                      .. ...+... ..+.-.|..   ....++.++.      ++.|..+|..+++.+..+......                 
T Consensus       140 ~~~~~~~~~~-~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G  215 (571)
T 2ad6_A          140 EVEVCDPKVG-STLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG  215 (571)
T ss_dssp             EEECCCGGGT-CBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EecCCCCCcc-ceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence            22 1111100 001111111   1234555544      789999999999988765421100                 


Q ss_pred             --------------------E-EEEEecC-CCeEEEeec------------C----CeEEEEECCCCceeeeeeccCceE
Q 011978          243 --------------------V-TCVKWGG-DGVIYTGSQ------------D----CTIKVWETTQGKLIRELKGHGHWV  284 (473)
Q Consensus       243 --------------------v-~~~~~~~-~~~l~s~~~------------d----~~i~~wd~~~~~~~~~~~~~~~~v  284 (473)
                                          + ..+++++ .+.++.+..            |    +.|..+|..+|+.+..++...+..
T Consensus       216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~  295 (571)
T 2ad6_A          216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE  295 (571)
T ss_dssp             CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence                                0 1133443 345655542            2    358889999998877664321100


Q ss_pred             EEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-c---
Q 011978          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-Q---  360 (473)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~---  360 (473)
                      ........-.+.....                        .+.....++.++.++.++..|....+......... .   
T Consensus       296 ~d~~~~~~p~l~~~~~------------------------~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          296 WDFAGVNQMVLTDQPV------------------------NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             SCCCCCCCCEEEEEEE------------------------TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cccccCCCCEEEeccc------------------------CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            0000000000000000                        00000135567778888888765543221111110 0   


Q ss_pred             --------cc--------------------------eeEEEECCCCcEEEEEE---------------------------
Q 011978          361 --------QL--------------------------VNHVYFSPDGQWVASAS---------------------------  379 (473)
Q Consensus       361 --------~~--------------------------v~~v~~sp~g~~lasgs---------------------------  379 (473)
                              ..                          -..++|+|+..++....                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                    00                          02467888877776653                           


Q ss_pred             ----------CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCC-CEE
Q 011978          380 ----------FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD-EVF  448 (473)
Q Consensus       380 ----------~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~-~i~  448 (473)
                                .++.|..||..+++.+-.+... .++....+...+..++.++.||.++.||.++++.+.++..... .-.
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~  510 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS  510 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence                      3478999999999987766532 2222223334566777799999999999999998765543221 112


Q ss_pred             EEEEeeCCCEEEE
Q 011978          449 AVDWSPDGEKVAS  461 (473)
Q Consensus       449 ~l~~s~d~~~l~s  461 (473)
                      .+.+..+|+.++.
T Consensus       511 p~~~~~~G~~yv~  523 (571)
T 2ad6_A          511 PMTYSFKGKQYIG  523 (571)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             eEEEEECCEEEEE
Confidence            2346678875543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=5.7e-05  Score=77.91  Aligned_cols=310  Identities=13%  Similarity=0.082  Sum_probs=181.7

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-------CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      ..|.++...++|...+ |..++-+..||..+++...-..       -....|.++...++|...+ |+.+ -+.+||..+
T Consensus       163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~  239 (781)
T 3v9f_A          163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANT  239 (781)
T ss_dssp             CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTT
T ss_pred             cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCC
Confidence            4688888887776554 5555568889987754321100       1135699999988886554 4444 688999876


Q ss_pred             CccccccCC------CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--------------Cccc
Q 011978          182 GKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--------------GHTL  241 (473)
Q Consensus       182 ~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--------------~h~~  241 (473)
                      ++.......      -....|.++...+      ...+-.|+..+-|.++|..++.......              -...
T Consensus       240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~  313 (781)
T 3v9f_A          240 ETFTNFHNNPGNIHGALSSYIFSIKQLK------DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNA  313 (781)
T ss_dssp             TEEEC-----------CCCCEEEEEECT------TSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSS
T ss_pred             CcEEEEEcCCCccccccCceEEEEEECC------CCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCC
Confidence            643221111      1123455554322      2355566665678888887655332111              1235


Q ss_pred             cEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeee---------ccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978          242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK---------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (473)
Q Consensus       242 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (473)
                      .|.++..+.+|.|..|+.++-|..++..++.......         .....|.++....                     
T Consensus       314 ~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~---------------------  372 (781)
T 3v9f_A          314 SARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG---------------------  372 (781)
T ss_dssp             CEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT---------------------
T ss_pred             eEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC---------------------
Confidence            6889998888999999988899999876654322110         0112344443322                     


Q ss_pred             HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee--eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT--RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (473)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~  390 (473)
                                      ...+..|+.++-+..++.........  ........|.+++..++|.+.+ |+.++-+..+|..
T Consensus       373 ----------------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~  435 (781)
T 3v9f_A          373 ----------------QGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTR  435 (781)
T ss_dssp             ----------------TSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSS
T ss_pred             ----------------CCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCC
Confidence                            12466666666677777542210000  0012335688999988887655 6666678999988


Q ss_pred             CCceEEEee--CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-----cCCCEEEEEEeeCCCEEEEEe
Q 011978          391 TGKFVAVFR--GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-----HADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       391 ~~~~~~~~~--~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-----h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      +++......  .....|.++...++|++.+. +. +-+..||..+++.......     ....|.++...++|+..+...
T Consensus       436 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~  513 (781)
T 3v9f_A          436 LKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF  513 (781)
T ss_dssp             SCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred             CCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc
Confidence            776433221  13467999988888875554 44 4589999877654321111     135788998888887655544


Q ss_pred             CCCc
Q 011978          464 KDRV  467 (473)
Q Consensus       464 ~D~~  467 (473)
                      .+|.
T Consensus       514 ~~Gl  517 (781)
T 3v9f_A          514 GGGV  517 (781)
T ss_dssp             SSCE
T ss_pred             CCCE
Confidence            3453

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.77  E-value=2.9e-06  Score=83.85  Aligned_cols=80  Identities=20%  Similarity=0.363  Sum_probs=52.8

Q ss_pred             CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC-EEEEEEeeCCCEE
Q 011978          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE-VFAVDWSPDGEKV  459 (473)
Q Consensus       381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~~s~d~~~l  459 (473)
                      +|.|..||+.+|+.+-...... ++..-.....+.+++.++.||.++.||.++++.+-++...... -.-+.|..||+.+
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence            5789999999999876654322 2221112234667888999999999999999987655432221 1235677888754


Q ss_pred             EE
Q 011978          460 AS  461 (473)
Q Consensus       460 ~s  461 (473)
                      ++
T Consensus       544 v~  545 (582)
T 1flg_A          544 LG  545 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.76  E-value=2.3e-06  Score=79.65  Aligned_cols=235  Identities=15%  Similarity=0.158  Sum_probs=131.1

Q ss_pred             ceEEEeeCCCcEEEEECCCC----eEEEEec--------CccccEEEEEecCCCeEEEeecC------CeEEEEECCCCc
Q 011978          211 RRFVSASKDGDARIWDVSLR----KCVICLS--------GHTLAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGK  272 (473)
Q Consensus       211 ~~~~s~s~dg~i~iwd~~~~----~~~~~~~--------~h~~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~  272 (473)
                      ..++++..+..|.+.|+.+.    +...++.        +. ..-..+...++|.++++..+      +.+.+.|..+++
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~-s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~  175 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY-SRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFE  175 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE-EEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC-CcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCe
Confidence            34566778899999998755    5555552        11 12334556788866665544      789999999999


Q ss_pred             eeeeeeccCce---EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978          273 LIRELKGHGHW---VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (473)
Q Consensus       273 ~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  349 (473)
                      .+.++......   -..+.++++......+      .|..+....          .+...+.+.. ..+.+|.+||....
T Consensus       176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS------~wg~p~~~~----------~g~~~~~~~~-~~~d~V~v~D~~~~  238 (462)
T 2ece_A          176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSS------EWAVPNTIE----------DGLKLEHLKD-RYGNRIHFWDLRKR  238 (462)
T ss_dssp             EEEECCSBCTTCCCCCCEEEETTTTEEEEC------BCCCHHHHT----------TCCCTTTHHH-HSCCEEEEEETTTT
T ss_pred             EEEEEccCCCCccccceEEECCCCCEEEEc------cCcCccccc----------cccchhhhhh-ccCCEEEEEECCCC
Confidence            88877532111   0112222221110000      000000000          0000000000 34788999998754


Q ss_pred             CCCeeeecC-cccceeEEEE--CCCCcEEEEEE------CCCcEEEEeCCCCceE--EEe--eCC---------------
Q 011978          350 KQPKTRMTG-HQQLVNHVYF--SPDGQWVASAS------FDKSIKLWNGTTGKFV--AVF--RGH---------------  401 (473)
Q Consensus       350 ~~~~~~~~~-~~~~v~~v~~--sp~g~~lasgs------~d~~v~lwd~~~~~~~--~~~--~~h---------------  401 (473)
                      +.......+ .......+.|  +|+++++..+.      .+++|.+|....++..  ..+  ...               
T Consensus       239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~  318 (462)
T 2ece_A          239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA  318 (462)
T ss_dssp             EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred             cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence            222222222 1223455655  99999888777      4568887766555321  111  110               


Q ss_pred             -ccCEEEEEEecCCCEEEEEeC-CCcEEEEECCC---CceeecccccC----------C----CEEEEEEeeCCCEEEEE
Q 011978          402 -VGPVYQISWSADSRLLLSGSK-DSTLKVWDIRT---QKLKQDLPGHA----------D----EVFAVDWSPDGEKVASG  462 (473)
Q Consensus       402 -~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~---~~~~~~~~~h~----------~----~i~~l~~s~d~~~l~s~  462 (473)
                       ......+.+||||++|.++.. .+.|.+||+..   .+....+.-..          .    .-..+.+||||++|.++
T Consensus       319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa  398 (462)
T 2ece_A          319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT  398 (462)
T ss_dssp             ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred             CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence             134678999999999888765 67899999853   23333332210          0    13568899999999888


Q ss_pred             e
Q 011978          463 G  463 (473)
Q Consensus       463 ~  463 (473)
                      .
T Consensus       399 N  399 (462)
T 2ece_A          399 N  399 (462)
T ss_dssp             C
T ss_pred             c
Confidence            7

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=2.7e-06  Score=74.19  Aligned_cols=187  Identities=9%  Similarity=0.056  Sum_probs=122.3

Q ss_pred             EEEEEecCCCeEEEeec---CCeEEEEECCCCceeeeeeccCc-eEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          243 VTCVKWGGDGVIYTGSQ---DCTIKVWETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       243 v~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      ...+.|++++.|+.++.   ++.|++.|..+++.+..+..... ....+++..                           
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g---------------------------   75 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN---------------------------   75 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---------------------------
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC---------------------------
Confidence            56788988787665542   58999999999998877642211 111122111                           


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~  398 (473)
                                ....++.-.++.+.++|....+.......+ ..  ....+++||+.++.+..++.|.++|..+.+.+..+
T Consensus        76 ----------~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I  142 (266)
T 2iwa_A           76 ----------EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKH  142 (266)
T ss_dssp             ----------TEEEEEETTCSEEEEEETTTTEEEEEEECC-SS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             ----------CEEEEEEecCCEEEEEECCCCcEEEEEECC-CC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence                      123455567889999998654433322223 11  12346668877777767889999999998887766


Q ss_pred             eCCc-----cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc-------------CCCEEEEEEeeCCCEE-
Q 011978          399 RGHV-----GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-------------ADEVFAVDWSPDGEKV-  459 (473)
Q Consensus       399 ~~h~-----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~s~d~~~l-  459 (473)
                      .-..     ..++.+.|. +|...+....++.|.+.|..+++....+.-.             ....+.++|+|+++.| 
T Consensus       143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf  221 (266)
T 2iwa_A          143 NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF  221 (266)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred             EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence            5321     247788988 7765555556789999999999887665421             1356899999998765 


Q ss_pred             EEEeCCCcEEe
Q 011978          460 ASGGKDRVLKL  470 (473)
Q Consensus       460 ~s~~~D~~i~~  470 (473)
                      +++.....+..
T Consensus       222 VTgk~~~~v~~  232 (266)
T 2iwa_A          222 VTGKLWPKLFE  232 (266)
T ss_dssp             EEETTCSEEEE
T ss_pred             EECCCCCeEEE
Confidence            45545555543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.74  E-value=1.3e-06  Score=87.95  Aligned_cols=281  Identities=16%  Similarity=0.186  Sum_probs=156.2

Q ss_pred             CCeEEEEecCCeEEEeeCCCCccccccCCCcC---------CcE-EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK---------KWI-TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK  231 (473)
Q Consensus       162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~v-~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~  231 (473)
                      +..|+.++.++.|..+|..+|+..........         ..+ ..+.       ....+++.++.|+.+..+|..+++
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~v~~~dg~l~alD~~tG~  138 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVA-------LWGDKVYVGTLDGRLIALDAKTGK  138 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE-------EEBTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceE-------EECCEEEEEcCCCEEEEEECCCCC
Confidence            45777788888999999988876432211100         000 0000       123567788889999999999999


Q ss_pred             EEEEecCcc----ccEEE-EEecCCCeEEEeec------CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978          232 CVICLSGHT----LAVTC-VKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (473)
Q Consensus       232 ~~~~~~~h~----~~v~~-~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (473)
                      .+..+....    ..+.+ ..+ .++.++.+..      ++.|..+|..+|+.+.++.....       .+...      
T Consensus       139 ~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~-------~p~~~------  204 (668)
T 1kv9_A          139 AIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG-------DPALP------  204 (668)
T ss_dssp             EEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC-------CTTSC------
T ss_pred             EeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCC-------CCCcc------
Confidence            887664321    11111 011 1556666543      58999999999998877643110       00000      


Q ss_pred             cCCCcccCCHHHHHHHHHhhh---------------hcc-cCCCCceEEEecCCc-------------------eEEEEe
Q 011978          301 DHTGKQYSSPEEMKKAALERY---------------NKI-KGNAPERLVSGSDDF-------------------TMFLWE  345 (473)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~l~~~~~d~-------------------~i~iwd  345 (473)
                            +... .... .....               ... .......++.++.++                   .+..+|
T Consensus       205 ------~~~~-~~~~-~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          205 ------YEHP-ELRE-AAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             ------CSSH-HHHH-HHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ------cccc-cccc-ccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence                  0000 0000 00000               000 000123444444443                   377777


Q ss_pred             CCCCCCCeeeecC-cc-------cceeEEEECCCCc---EEEEEECCCcEEEEeCCCCceEEEeeCCc-----------c
Q 011978          346 PAVSKQPKTRMTG-HQ-------QLVNHVYFSPDGQ---WVASASFDKSIKLWNGTTGKFVAVFRGHV-----------G  403 (473)
Q Consensus       346 ~~~~~~~~~~~~~-~~-------~~v~~v~~sp~g~---~lasgs~d~~v~lwd~~~~~~~~~~~~h~-----------~  403 (473)
                      ...++........ |.       .......+..+|+   +++.++.+|.++++|..+|+.+...+...           +
T Consensus       277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g  356 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (668)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence            6655443322222 21       1122223334665   78899999999999999999874432211           0


Q ss_pred             -CE------------------------EEEEEecCCCEEEEE------------------------------------eC
Q 011978          404 -PV------------------------YQISWSADSRLLLSG------------------------------------SK  422 (473)
Q Consensus       404 -~v------------------------~~v~~sp~g~~l~s~------------------------------------s~  422 (473)
                       ++                        ..++++|+...++..                                    ..
T Consensus       357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~  436 (668)
T 1kv9_A          357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (668)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence             00                        125778876665531                                    13


Q ss_pred             CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       423 Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +|.|+.||+.+++.+-..+.+ .......+...+..++.++.|+.++.|+
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d  485 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYS  485 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             cceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhh
Confidence            478999999999886554432 2233344556778889999999999886

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.68  E-value=5.8e-05  Score=66.63  Aligned_cols=250  Identities=10%  Similarity=0.010  Sum_probs=135.8

Q ss_pred             CeEEEEecCCeEEEeeCCCCcccc----ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC
Q 011978          163 KHLVSGSKAGELQCWDPQTGKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (473)
Q Consensus       163 ~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~  238 (473)
                      .+|+.+.. +.|+.+++.......    ..+........++.|.+.    ....+++....+.|..+|............
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~----~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~   76 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV----DKVVYWTDISEPSIGRASLHGGEPTTIIRQ   76 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT----TTEEEEEETTTTEEEEEESSSCCCEEEECT
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecC----CCEEEEEECCCCEEEEEecCCCCcEEEEEC
Confidence            34554443 478888776543210    001111123445665542    223555666678999999876544333333


Q ss_pred             ccccEEEEEecCC-CeEEE-eecCCeEEEEECCCCceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978          239 HTLAVTCVKWGGD-GVIYT-GSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (473)
Q Consensus       239 h~~~v~~~~~~~~-~~l~s-~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (473)
                      .......++++++ +.++. ....+.|.+++..... ...+. ........++++++.                      
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~----------------------  133 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVR----------------------  133 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTT----------------------
T ss_pred             CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCC----------------------
Confidence            3346678888874 55554 4556789998875432 22221 111223444444321                      


Q ss_pred             HHHhhhhcccCCCCceEEEecC--CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCC
Q 011978          316 AALERYNKIKGNAPERLVSGSD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG  392 (473)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~  392 (473)
                                   ...+++...  .+.|..+++..... .............++++|++..|..+. ..+.|..+|....
T Consensus       134 -------------g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          134 -------------GNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             -------------TEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             -------------CEEEEEECCCCCcEEEEEecCCCCc-EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence                         011222222  34566666543221 111112234578899999877665554 5578999998755


Q ss_pred             ceEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccccC-CCEEEEEEeeCCC
Q 011978          393 KFVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGE  457 (473)
Q Consensus       393 ~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~d~~  457 (473)
                      .....+.+ ......++..  +..|..+. ..+.|..+|..+++....+.... ...+++++.|++.
T Consensus       200 ~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          200 GRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             ceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            44333332 2334566654  44555444 56799999999888877765332 2467788888764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.64  E-value=6.6e-06  Score=70.90  Aligned_cols=179  Identities=10%  Similarity=0.131  Sum_probs=116.1

Q ss_pred             EEEEEecCCCe-EEEeecCC--eEEEEECCCCceeeeeeccCce-EEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          243 VTCVKWGGDGV-IYTGSQDC--TIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       243 v~~~~~~~~~~-l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      ...+.|+ ++. +.+.+.+|  .|+.+|+.+++.++++...... -..++..                            
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~----------------------------   95 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW----------------------------   95 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE----------------------------
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe----------------------------
Confidence            4567787 455 44666666  8999999999988776432211 0111111                            


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~  398 (473)
                               .....+..-.++.+.++|....+.......+..    ...+++|++.|+....++.|.++|..+.+.+..+
T Consensus        96 ---------g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I  162 (262)
T 3nol_A           96 ---------KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTI  162 (262)
T ss_dssp             ---------TTEEEEEESSSSEEEEEETTTCCEEEEEECSSC----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred             ---------CCEEEEEEeeCCEEEEEECccCcEEEEEECCCC----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence                     112334455688999999866544333222221    1234467777776666778999999999888776


Q ss_pred             eCCc-----cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc------------CCCEEEEEEeeCCCEEEE
Q 011978          399 RGHV-----GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH------------ADEVFAVDWSPDGEKVAS  461 (473)
Q Consensus       399 ~~h~-----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h------------~~~i~~l~~s~d~~~l~s  461 (473)
                      ....     ..++.+.|. +|+..|..-.++.|.+.|..+++....+.-.            .+-.+.++|+|+++.|..
T Consensus       163 ~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV  241 (262)
T 3nol_A          163 TVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV  241 (262)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred             EeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence            5321     346678887 7766655556889999999999886654321            134689999999888776


Q ss_pred             EeC
Q 011978          462 GGK  464 (473)
Q Consensus       462 ~~~  464 (473)
                      .|.
T Consensus       242 TGK  244 (262)
T 3nol_A          242 TGK  244 (262)
T ss_dssp             EET
T ss_pred             ECC
Confidence            664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.62  E-value=4.1e-06  Score=84.46  Aligned_cols=115  Identities=18%  Similarity=0.247  Sum_probs=69.5

Q ss_pred             EEEECC-CCCeEEEEeCCC-----------eEEEEeCCCCc--eeEEE-cCCCCCEEEEEECCCCCeEEEEec-CCeEEE
Q 011978          113 SVAFSP-DGRQLASGSGDT-----------TVRLWDLNTQT--PMFKC-TGHKNWVLCIAWSADGKHLVSGSK-AGELQC  176 (473)
Q Consensus       113 ~~~~sp-~~~~lat~s~d~-----------~i~iwd~~~~~--~~~~~-~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~i  176 (473)
                      .+++.| +++.++.|+.+.           .+.+||..+++  .+... ..+.....++++..+|+.++.|+. ++.+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456667 888888887542           68899988764  22222 223334456778889999999884 468999


Q ss_pred             eeCCCCcccccc-CCCcCCcEEEEEeceeccCCCCceEEEee-CC-----CcEEEEECCCCeEE
Q 011978          177 WDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSAS-KD-----GDARIWDVSLRKCV  233 (473)
Q Consensus       177 wd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~d-----g~i~iwd~~~~~~~  233 (473)
                      ||+.+++..... +........ ...     ..++..++.|+ .+     ..+.+||..+++-.
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s-~~~-----~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQS-SAT-----MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCE-EEE-----CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ecCcCCceeECCCCCccccccc-eEE-----ecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            998876532211 111111111 111     11456777777 34     56889998876643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.59  E-value=1e-05  Score=69.70  Aligned_cols=179  Identities=8%  Similarity=0.025  Sum_probs=117.2

Q ss_pred             EEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCce-EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978          243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (473)
Q Consensus       243 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
                      ...+.|+.+.++.+.+.+|.|+.+|+.+++.++++ ..... -..+++..                              
T Consensus        57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g------------------------------  105 (268)
T 3nok_A           57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG------------------------------  105 (268)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS------------------------------
T ss_pred             cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC------------------------------
Confidence            45677775445667788899999999999987765 22211 11122111                              


Q ss_pred             hcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC
Q 011978          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (473)
Q Consensus       322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h  401 (473)
                             ....+..-.++.+.++|....+...........  .  .+++|++.|+.+..++.|.++|..+.+.+..+.-.
T Consensus       106 -------~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG--w--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~  174 (268)
T 3nok_A          106 -------ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG--W--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVK  174 (268)
T ss_dssp             -------SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC--C--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred             -------CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce--e--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeC
Confidence                   123445567889999998654433332222111  2  33467887777777889999999999888776532


Q ss_pred             c-----cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-------------cCCCEEEEEEeeCCCEEEEEe
Q 011978          402 V-----GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-------------HADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       402 ~-----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------------h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      .     ..++.+.|. +|+..|..-.++.|.+.|..+++....+.-             -.+-.+.++|+|+++.|...|
T Consensus       175 ~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          175 LRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             ETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            2     256788887 776665555688999999999987654432             113568999999877666555


Q ss_pred             C
Q 011978          464 K  464 (473)
Q Consensus       464 ~  464 (473)
                      .
T Consensus       254 K  254 (268)
T 3nok_A          254 K  254 (268)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.57  E-value=8.1e-05  Score=64.87  Aligned_cols=201  Identities=11%  Similarity=0.087  Sum_probs=125.2

Q ss_pred             CEEEEEECCCCCeEEEEec--CCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC
Q 011978          152 WVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~  229 (473)
                      ....++|++|+...++.+.  ++.|++.|+.+++.......+......++.+.      ....+++.-.++.+.++|..+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~------g~~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL------NEKLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE------TTEEEEEETTCSEEEEEETTT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe------CCEEEEEEecCCEEEEEECCC
Confidence            3578999998754444443  58999999999986544322222222344432      123455555678999999999


Q ss_pred             CeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCC
Q 011978          230 RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (473)
Q Consensus       230 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  309 (473)
                      .+.+..+.-....-..++.++ +.++.+..+++|.++|..+.+.++.+.-.                             
T Consensus        96 ~~v~~~i~~g~~~g~glt~Dg-~~l~vs~gs~~l~viD~~t~~v~~~I~Vg-----------------------------  145 (266)
T 2iwa_A           96 LSNIKNFTHQMKDGWGLATDG-KILYGSDGTSILYEIDPHTFKLIKKHNVK-----------------------------  145 (266)
T ss_dssp             TEEEEEEECCSSSCCEEEECS-SSEEEECSSSEEEEECTTTCCEEEEEECE-----------------------------
T ss_pred             CcEEEEEECCCCCeEEEEECC-CEEEEECCCCeEEEEECCCCcEEEEEEEC-----------------------------
Confidence            888877742211112344432 24555556788888888776655443210                             


Q ss_pred             HHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (473)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~  389 (473)
                                                .. +                  ..-..++.+.|. +|...+....++.|.+.|.
T Consensus       146 --------------------------~~-~------------------~p~~~~nele~~-dg~lyvn~~~~~~V~vID~  179 (266)
T 2iwa_A          146 --------------------------YN-G------------------HRVIRLNELEYI-NGEVWANIWQTDCIARISA  179 (266)
T ss_dssp             --------------------------ET-T------------------EECCCEEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred             --------------------------CC-C------------------cccccceeEEEE-CCEEEEecCCCCeEEEEEC
Confidence                                      00 0                  000124456666 6765555556789999999


Q ss_pred             CCCceEEEeeCC-------------ccCEEEEEEecCCCE-EEEEeCCCcEEEEECCCC
Q 011978          390 TTGKFVAVFRGH-------------VGPVYQISWSADSRL-LLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       390 ~~~~~~~~~~~h-------------~~~v~~v~~sp~g~~-l~s~s~Dg~i~iwd~~~~  434 (473)
                      .+++.+..+.-.             ....+.++|+|+++. ++++...+.+...++...
T Consensus       180 ~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          180 KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999998887532             135689999999875 555556788888887653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.56  E-value=1.7e-05  Score=78.20  Aligned_cols=114  Identities=11%  Similarity=0.055  Sum_probs=66.8

Q ss_pred             CCeEEEEec-CCeEEEeeC-CCCccccccCCCcCCcEE------EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE
Q 011978          162 GKHLVSGSK-AGELQCWDP-QTGKPSGNPLSGHKKWIT------GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV  233 (473)
Q Consensus       162 g~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~~v~------~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~  233 (473)
                      +..++.++. ++.|.-+|. .+|+..-.........+.      .+...|.   ....+++.++.|+.+..+|..+++.+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~v~~~dg~l~alD~~tG~~~  138 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLA---YGAGQIVKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCE---EETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccE---EECCEEEEEeCCCEEEEEECCCCCEE
Confidence            445666666 788888888 787754322111000000      0000000   12356777888999999999999887


Q ss_pred             EEecCcc--c--cEEE-EEecCCCeEEEeec------CCeEEEEECCCCceeeeeec
Q 011978          234 ICLSGHT--L--AVTC-VKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       234 ~~~~~h~--~--~v~~-~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~  279 (473)
                      .......  .  .+.+ ... .++.++.++.      ++.|..+|..+|+.+.++..
T Consensus       139 W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          139 WEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            6543211  0  1211 111 1566666655      79999999999998876643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.55  E-value=0.0002  Score=64.60  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=66.8

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC--CeEEEeeCCCCcccc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPSG  186 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d--g~i~iwd~~~~~~~~  186 (473)
                      .....++|+++|+.+++-..++.|..||..+.... ... .......++++++|+.+++....  ..|..++..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~-~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI-HAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE-EEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEE-EEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            34668999999997777667899999998764322 222 23458899999999865554332  247777776665321


Q ss_pred             ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC
Q 011978          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR  230 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~  230 (473)
                      ...........++...     .....+++...++.|..+|...+
T Consensus       110 ~~~~~~~~~~~g~~~~-----~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPL-----SDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             EEECTTCSCEEEEEES-----SSSEEEEEETTTTEEEEEETTTT
T ss_pred             EEeCCCccccCccccc-----CCCcEEEEECCCCeEEEEeCCCC
Confidence            1100111222333221     12223344445777777776654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.53  E-value=5.9e-05  Score=68.70  Aligned_cols=108  Identities=16%  Similarity=0.069  Sum_probs=67.9

Q ss_pred             ceeEEEECCCCcEEEEE-ECCCcEEEEeCCCCc--eEEEeeCCccCEEEEEEecCCCEEEEEeC----------CCcEEE
Q 011978          362 LVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGK--FVAVFRGHVGPVYQISWSADSRLLLSGSK----------DSTLKV  428 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~sp~g~~l~s~s~----------Dg~i~i  428 (473)
                      ..+.++++|+|++|..+ +..+.|..|++....  ....+....+ ...+++.++|++.++...          .+.|..
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~  264 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIK  264 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEE
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEE
Confidence            35679999999866655 456889999987421  1122211223 788999999987666544          466888


Q ss_pred             EECCCCceeeccccc----CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          429 WDIRTQKLKQDLPGH----ADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       429 wd~~~~~~~~~~~~h----~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +|.. ++....+...    ...+..+.+ .+++.+++....+.|..+.
T Consensus       265 ~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~  310 (322)
T 2fp8_A          265 FDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV  310 (322)
T ss_dssp             ECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred             ECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence            8875 5554444322    234566666 4666666666667776653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.52  E-value=0.0002  Score=63.18  Aligned_cols=249  Identities=12%  Similarity=0.025  Sum_probs=135.5

Q ss_pred             eEEEEeCCCeEEEEeCCCCcee-----EEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCCccccccCCCcCCc
Q 011978          122 QLASGSGDTTVRLWDLNTQTPM-----FKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPLSGHKKW  195 (473)
Q Consensus       122 ~lat~s~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~  195 (473)
                      +|..+.. +.|+.+++.+....     ..+.........++|++++..|+.+. .++.|..++...+.... ........
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~~~~~~~~   80 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-IIRQDLGS   80 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-EECTTCCC
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-EEECCCCC
Confidence            4444443 47888887654310     11111123467899999776666554 56899999987654221 12122234


Q ss_pred             EEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeec---CCeEEEEECCCC
Q 011978          196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ---DCTIKVWETTQG  271 (473)
Q Consensus       196 v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~---d~~i~~wd~~~~  271 (473)
                      ..++.+.+.    ....+++....+.|.+++...................+++++ ++.++.+..   .+.|..++... 
T Consensus        81 p~~ia~d~~----~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-  155 (267)
T 1npe_A           81 PEGIALDHL----GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-  155 (267)
T ss_dssp             EEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-
T ss_pred             ccEEEEEec----CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-
Confidence            566666542    123455556677899998865332222222223567888988 466665554   36787777643 


Q ss_pred             ceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCC
Q 011978          272 KLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (473)
Q Consensus       272 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  350 (473)
                      .....+. ........++++++.                                   ...+++....+.|..++.....
T Consensus       156 ~~~~~~~~~~~~~P~gia~d~~~-----------------------------------~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          156 TNRRILAQDNLGLPNGLTFDAFS-----------------------------------SQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             CCCEEEECTTCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCcEEEEcCCC-----------------------------------CEEEEEECCCCEEEEEecCCCc
Confidence            2222221 111223344443321                                   1234455556677777764321


Q ss_pred             CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc-cCEEEEEEecCCC
Q 011978          351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-GPVYQISWSADSR  415 (473)
Q Consensus       351 ~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~-~~v~~v~~sp~g~  415 (473)
                      . .....+ ......+++. ++.++++....+.|..+|..+++.+..+.... .....+++.|++.
T Consensus       201 ~-~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          201 R-RKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             E-EEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             e-EEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            1 111111 1234556654 34444444456899999999999888875432 2467788888875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.50  E-value=6.4e-05  Score=64.17  Aligned_cols=181  Identities=9%  Similarity=0.081  Sum_probs=115.5

Q ss_pred             cEEEEEecCCCeEEEeecC--CeEEEEECCCCceeeeeeccCceE-EEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          242 AVTCVKWGGDGVIYTGSQD--CTIKVWETTQGKLIRELKGHGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       242 ~v~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      ....+.|+++.++.+.+.+  ..|+.+|+.+++.++++....... ..+++..                           
T Consensus        22 ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~---------------------------   74 (243)
T 3mbr_X           22 FTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR---------------------------   74 (243)
T ss_dssp             CEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---------------------------
T ss_pred             ccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC---------------------------
Confidence            3557788764344455554  489999999999887764332210 1111111                           


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~  398 (473)
                                .......-.++.+.++|....+.......+...  .  .+++++..|..+..++.|.++|..+.+.+..+
T Consensus        75 ----------~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G--w--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I  140 (243)
T 3mbr_X           75 ----------DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG--W--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSI  140 (243)
T ss_dssp             ----------TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC--C--EEEECSSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             ----------CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc--e--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence                      123444566889999997654433332222222  2  33456776666666889999999999888776


Q ss_pred             eCCc-----cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-------------cCCCEEEEEEeeCCCEEE
Q 011978          399 RGHV-----GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-------------HADEVFAVDWSPDGEKVA  460 (473)
Q Consensus       399 ~~h~-----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------------h~~~i~~l~~s~d~~~l~  460 (473)
                      +-..     ..++.+.|. +|+..|..-.+..|.+.|..+++....+.-             -.+-.+.++|+|+++.|.
T Consensus       141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf  219 (243)
T 3mbr_X          141 KVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF  219 (243)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred             EEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence            5422     356778876 676665555677899999999987654431             113568999999887776


Q ss_pred             EEeC
Q 011978          461 SGGK  464 (473)
Q Consensus       461 s~~~  464 (473)
                      ..|.
T Consensus       220 VTGK  223 (243)
T 3mbr_X          220 VTGK  223 (243)
T ss_dssp             EEET
T ss_pred             EECC
Confidence            6654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.44  E-value=5.7e-05  Score=74.51  Aligned_cols=116  Identities=9%  Similarity=0.071  Sum_probs=66.4

Q ss_pred             CCeEEEEec-CCeEEEeeC-CCCccccccCCCcCC---------c-EEEEEeceeccCCCCceEEEeeCCCcEEEEECCC
Q 011978          162 GKHLVSGSK-AGELQCWDP-QTGKPSGNPLSGHKK---------W-ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (473)
Q Consensus       162 g~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~---------~-v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~  229 (473)
                      +..|+.++. ++.|.-+|. .+|+..-........         . ...+.+.|.. .....+++.++.|+.+.-+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~-g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGD-GKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCC-SSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecC-CcceeEEEEEcCCCEEEEEECCC
Confidence            446666666 788888888 787754322111000         0 0111211100 00112377888899999999999


Q ss_pred             CeEEEEecCcc----ccEEE-EEecCCCeEEEee------cCCeEEEEECCCCceeeeeec
Q 011978          230 RKCVICLSGHT----LAVTC-VKWGGDGVIYTGS------QDCTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       230 ~~~~~~~~~h~----~~v~~-~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~  279 (473)
                      ++.+.......    ..+.+ ... .++.++.++      .++.|+-+|..+|+.+.++..
T Consensus       141 G~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          141 GETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            99876643221    01111 111 156666665      389999999999998876653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.44  E-value=6.4e-06  Score=79.42  Aligned_cols=242  Identities=15%  Similarity=0.073  Sum_probs=140.9

Q ss_pred             CCCCeEEEEeC-CCeEEEEeCCCCceeEEEcC-CCCCEEEEEE-C-CCCCeEEEEe------------------cCCeEE
Q 011978          118 PDGRQLASGSG-DTTVRLWDLNTQTPMFKCTG-HKNWVLCIAW-S-ADGKHLVSGS------------------KAGELQ  175 (473)
Q Consensus       118 p~~~~lat~s~-d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~-s-~dg~~l~s~~------------------~dg~i~  175 (473)
                      |||++|+.... ++.|.+.|+.+.+....+.- .......+++ + |+++++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            48888877664 56799999999876653321 2345788888 5 9999998884                  345789


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC------------------------------------
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------------------------------------  219 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d------------------------------------  219 (473)
                      +.|..+.+...+...+-.  ...+..+|     ++.++.+.+.+                                    
T Consensus       179 vID~~t~~v~~qI~Vgg~--pd~~~~sp-----dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGN--LDNCDADY-----EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEETTTTEEEEEEEESSC--CCCEEECS-----SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             EEECCCCeEEEEEEeCCC--ccceEECC-----CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            999887665433221111  11122222     22233222211                                    


Q ss_pred             --CcEEEEECCC--CeE-EEEecCccccEEEEEecCCCe--EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccc
Q 011978          220 --GDARIWDVSL--RKC-VICLSGHTLAVTCVKWGGDGV--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE  292 (473)
Q Consensus       220 --g~i~iwd~~~--~~~-~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  292 (473)
                        +.|.+.|..+  ++. +..+.- .....++.++|||.  ++++..+.+|.++|+.+.+..  +.+.        +.+.
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~--~~~~--------l~~~  320 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV--FYEN--------ADPR  320 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH--HHSC--------CCGG
T ss_pred             EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc--cccc--------cCcc
Confidence              3477777776  333 222211 12345678899984  456667889999998753211  0000        0000


Q ss_pred             ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC
Q 011978          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (473)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g  372 (473)
                                                           ..++          ..+.           -......++|+|+|
T Consensus       321 -------------------------------------~~v~----------~~v~-----------vG~gP~h~aF~~dG  342 (595)
T 1fwx_A          321 -------------------------------------SAVV----------AEPE-----------LGLGPLHTAFDGRG  342 (595)
T ss_dssp             -------------------------------------GGEE----------ECCB-----------CCSCEEEEEECTTS
T ss_pred             -------------------------------------cceE----------EEcC-----------CCCCcceEEECCCC
Confidence                                                 0000          0000           01236778999999


Q ss_pred             cEEEEEECCCcEEEEeCCC----------CceEEEeeCCccCE-----EEEEEecCCCEEEEEeC---CCcE--------
Q 011978          373 QWVASASFDKSIKLWNGTT----------GKFVAVFRGHVGPV-----YQISWSADSRLLLSGSK---DSTL--------  426 (473)
Q Consensus       373 ~~lasgs~d~~v~lwd~~~----------~~~~~~~~~h~~~v-----~~v~~sp~g~~l~s~s~---Dg~i--------  426 (473)
                      ...++...|+.|.+||+.+          .+.+..+..|-.+-     .+..++|||++|+++..   |+-+        
T Consensus       343 ~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~  422 (595)
T 1fwx_A          343 NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPE  422 (595)
T ss_dssp             EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCE
T ss_pred             eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCC
Confidence            5445566799999999876          45667776664432     12345799999998753   4431        


Q ss_pred             --EEEECCCCc
Q 011978          427 --KVWDIRTQK  435 (473)
Q Consensus       427 --~iwd~~~~~  435 (473)
                        .++|+..++
T Consensus       423 ~~ql~dis~~~  433 (595)
T 1fwx_A          423 NDQLIDISGDK  433 (595)
T ss_dssp             EEEEEECSSSS
T ss_pred             cceEEEcCCCc
Confidence              788986544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.43  E-value=0.00015  Score=62.56  Aligned_cols=185  Identities=15%  Similarity=0.170  Sum_probs=109.3

Q ss_pred             EEEEEECCCCCeEEEEecCC--eEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC
Q 011978          153 VLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR  230 (473)
Q Consensus       153 v~~l~~s~dg~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~  230 (473)
                      ...|.|+ ++.+..+.+.+|  .|+.+|+++++............-.++...      ....++..-.++.+.++|..+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~------g~~ly~ltw~~~~v~v~D~~t~  117 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW------KDKIVGLTWKNGLGFVWNIRNL  117 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE------TTEEEEEESSSSEEEEEETTTC
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe------CCEEEEEEeeCCEEEEEECccC
Confidence            4678888 666666777766  899999999986543221111111223221      1223344445778888888888


Q ss_pred             eEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978          231 KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (473)
Q Consensus       231 ~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (473)
                      +.+.++.-.... ..+++.. +.|+.+..+++|.++|..+.+.+.++....                             
T Consensus       118 ~~~~ti~~~~eG-~glt~dg-~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-----------------------------  166 (262)
T 3nol_A          118 RQVRSFNYDGEG-WGLTHND-QYLIMSDGTPVLRFLDPESLTPVRTITVTA-----------------------------  166 (262)
T ss_dssp             CEEEEEECSSCC-CCEEECS-SCEEECCSSSEEEEECTTTCSEEEEEECEE-----------------------------
T ss_pred             cEEEEEECCCCc-eEEecCC-CEEEEECCCCeEEEEcCCCCeEEEEEEecc-----------------------------
Confidence            777666532111 2233332 244544446778888877766554432100                             


Q ss_pred             HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-ccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (473)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~lasgs~d~~v~lwd~  389 (473)
                                                 +                   +. -..++.+.+. +|+..|..-.++.|.+.|.
T Consensus       167 ---------------------------~-------------------g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp  199 (262)
T 3nol_A          167 ---------------------------H-------------------GEELPELNELEWV-DGEIFANVWQTNKIVRIDP  199 (262)
T ss_dssp             ---------------------------T-------------------TEECCCEEEEEEE-TTEEEEEETTSSEEEEECT
T ss_pred             ---------------------------C-------------------CccccccceeEEE-CCEEEEEEccCCeEEEEEC
Confidence                                       0                   00 0123344554 6665555556778999999


Q ss_pred             CCCceEEEeeCC------------ccCEEEEEEecCCCEEEEEeC
Q 011978          390 TTGKFVAVFRGH------------VGPVYQISWSADSRLLLSGSK  422 (473)
Q Consensus       390 ~~~~~~~~~~~h------------~~~v~~v~~sp~g~~l~s~s~  422 (473)
                      .+|+.+..+...            ....+.++|+|+++.|...++
T Consensus       200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            999988776532            135689999999887776664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.38  E-value=1.2e-05  Score=77.61  Aligned_cols=238  Identities=11%  Similarity=0.048  Sum_probs=135.6

Q ss_pred             eEEEeeCCCcEEEEECCCCeEEEEecC-ccccEEEEEe-c-CCC-eEEEee------------------cCCeEEEEECC
Q 011978          212 RFVSASKDGDARIWDVSLRKCVICLSG-HTLAVTCVKW-G-GDG-VIYTGS------------------QDCTIKVWETT  269 (473)
Q Consensus       212 ~~~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~-~-~~~-~l~s~~------------------~d~~i~~wd~~  269 (473)
                      .|+....+..|.+.|+.+.++...+.- .......+++ . +++ ++++++                  .++.+.+.|..
T Consensus       104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~  183 (595)
T 1fwx_A          104 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD  183 (595)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred             EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence            345555667899999999998774321 1234667776 3 554 566653                  35688999999


Q ss_pred             CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHH--------------HHHHHhhhhcccCCCCceEEEe
Q 011978          270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM--------------KKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       270 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +.+...++.-.+ .-..++++++..+...+....... .....+              .......    .+   ..... 
T Consensus       184 t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~-~~i~~~~~~~~d~v~V~~~~~~~~~v~----~G---k~~~i-  253 (595)
T 1fwx_A          184 KWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKG-MTLPEMTAAEMDHIVVFNIAEIEKAIA----AG---DYQEL-  253 (595)
T ss_dssp             TTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCC-SSHHHHTCCSEEEEEEEEHHHHHHHHH----HT---CSEEE-
T ss_pred             CCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccC-cchhhccccccceEEEeeccceeEecc----CC---CeeEE-
Confidence            888887765433 223444555543322221111000 000000              0000000    01   11111 


Q ss_pred             cCCceEEEEeCCC--CCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCc------------eEEEeeC
Q 011978          336 SDDFTMFLWEPAV--SKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGK------------FVAVFRG  400 (473)
Q Consensus       336 ~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~------------~~~~~~~  400 (473)
                         +.+.+.|...  ......... -.....++.++|||++++.++ .+.+|.++|+.+.+            .+.....
T Consensus       254 ---~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v  329 (595)
T 1fwx_A          254 ---NGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  329 (595)
T ss_dssp             ---TTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred             ---CcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence               3488888765  222111221 123456799999999887765 56799999998653            2333332


Q ss_pred             CccCEEEEEEecCCCEEEEEeCCCcEEEEECCC----------CceeecccccCCCE-----EEEEEeeCCCEEEEEeC
Q 011978          401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT----------QKLKQDLPGHADEV-----FAVDWSPDGEKVASGGK  464 (473)
Q Consensus       401 h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~----------~~~~~~~~~h~~~i-----~~l~~s~d~~~l~s~~~  464 (473)
                      - .....++|+|+|...++.-.|+.|.+||+..          .+.+..+..|..+-     .+...+|||++|+++..
T Consensus       330 G-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          330 G-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             C-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             C-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            2 3467899999994444556799999999876          34455555443211     12345899999998754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.34  E-value=0.00022  Score=61.40  Aligned_cols=185  Identities=12%  Similarity=0.082  Sum_probs=111.8

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK  231 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~  231 (473)
                      ....|.|+ ++.+.++.+.+|.|+.+|+++++..... ......-.++...      ....++..-.++.+.++|..+.+
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~------g~~Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD------GERLYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC------SSCEEEEESSSCEEEEEETTTTE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe------CCEEEEEEccCCEEEEEECCcCc
Confidence            34678887 3556667788899999999999876544 2111112233322      12344445567888888988888


Q ss_pred             EEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978          232 CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (473)
Q Consensus       232 ~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (473)
                      .+.++.-... -..+++.. +.|+.+..+++|.++|..+.+.++++.-..                              
T Consensus       128 ~~~ti~~~~e-GwGLt~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~------------------------------  175 (268)
T 3nok_A          128 RERTTRYSGE-GWGLCYWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKL------------------------------  175 (268)
T ss_dssp             EEEEEECSSC-CCCEEEET-TEEEEECSSSEEEEECTTTCCEEEEEECEE------------------------------
T ss_pred             EEEEEeCCCc-eeEEecCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCC------------------------------
Confidence            8776653211 12333332 345555557788888877766655432100                              


Q ss_pred             HHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (473)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~  391 (473)
                                                ++                  ..-..++.+.|. +|+..|....+..|.+.|..+
T Consensus       176 --------------------------~g------------------~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T  210 (268)
T 3nok_A          176 --------------------------RG------------------QPVELINELECA-NGVIYANIWHSSDVLEIDPAT  210 (268)
T ss_dssp             --------------------------TT------------------EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT
T ss_pred             --------------------------CC------------------cccccccccEEe-CCEEEEEECCCCeEEEEeCCC
Confidence                                      00                  000123445554 676555555677899999999


Q ss_pred             CceEEEeeCC-------------ccCEEEEEEecCCCEEEEEe
Q 011978          392 GKFVAVFRGH-------------VGPVYQISWSADSRLLLSGS  421 (473)
Q Consensus       392 ~~~~~~~~~h-------------~~~v~~v~~sp~g~~l~s~s  421 (473)
                      |+.+..+.-.             ....+.++|+|+++.|...+
T Consensus       211 G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          211 GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9988776532             13678999999876555554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.34  E-value=0.00044  Score=62.83  Aligned_cols=73  Identities=12%  Similarity=0.088  Sum_probs=49.2

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-EEEcC------------------CCCCEEEEEECCCCCeEEEEecC
Q 011978          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTG------------------HKNWVLCIAWSADGKHLVSGSKA  171 (473)
Q Consensus       111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-~~~~~------------------~~~~v~~l~~s~dg~~l~s~~~d  171 (473)
                      ..+++++++|+.+.++..++.|..||..++... +....                  .......+++.+++..|+.+...
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            446789999987888888999999998765422 11110                  01347889999733356666555


Q ss_pred             CeEEEeeCCCCc
Q 011978          172 GELQCWDPQTGK  183 (473)
Q Consensus       172 g~i~iwd~~~~~  183 (473)
                      +.|..+|..++.
T Consensus       101 ~~i~~~d~~~g~  112 (322)
T 2fp8_A          101 YHLSVVGSEGGH  112 (322)
T ss_dssp             TEEEEECTTCEE
T ss_pred             CCEEEEeCCCCE
Confidence            668888877553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.28  E-value=0.00026  Score=69.89  Aligned_cols=116  Identities=13%  Similarity=-0.021  Sum_probs=63.7

Q ss_pred             CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEece--eccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc
Q 011978          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP--VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH  239 (473)
Q Consensus       162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h  239 (473)
                      +..++.++.++.|.-+|..+|+..-........... ..+..  ........+++.++.|+.+.-+|..+++.+......
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~-~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIR-PCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCC-CSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccc-cccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            345666665445888888888754322111000000 00000  000012356778888999999999999988665422


Q ss_pred             cc----cEEE--EEecC--CC--eEEEee------cCCeEEEEECCCCceeeeee
Q 011978          240 TL----AVTC--VKWGG--DG--VIYTGS------QDCTIKVWETTQGKLIRELK  278 (473)
Q Consensus       240 ~~----~v~~--~~~~~--~~--~l~s~~------~d~~i~~wd~~~~~~~~~~~  278 (473)
                      ..    .+.+  +....  ++  .++.++      .++.|.-+|..+|+.+....
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence            10    1110  11111  12  566655      37899999999999887654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.26  E-value=0.0015  Score=55.76  Aligned_cols=188  Identities=13%  Similarity=0.096  Sum_probs=111.3

Q ss_pred             CCEEEEEECCCCCeEEEEecC--CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978          151 NWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (473)
Q Consensus       151 ~~v~~l~~s~dg~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~  228 (473)
                      .....|.|++ +....+.+.+  +.|+.+|+.+++......-.....-.++...      ....++..-.++.+.++|..
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~------~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW------RDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE------TTEEEEEESSSSEEEEEETT
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe------CCEEEEEEeeCCEEEEEECC
Confidence            3466788875 5555666665  4899999999986543211111111223221      12344455567889999998


Q ss_pred             CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978          229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (473)
Q Consensus       229 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (473)
                      +.+.+.++.-.... ..++... +.|+.+..++.|.++|..+.+.++++.-..                           
T Consensus        94 tl~~~~ti~~~~~G-wglt~dg-~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~---------------------------  144 (243)
T 3mbr_X           94 TLTPRARFRYPGEG-WALTSDD-SHLYMSDGTAVIRKLDPDTLQQVGSIKVTA---------------------------  144 (243)
T ss_dssp             TTEEEEEEECSSCC-CEEEECS-SCEEEECSSSEEEEECTTTCCEEEEEECEE---------------------------
T ss_pred             cCcEEEEEeCCCCc-eEEeeCC-CEEEEECCCCeEEEEeCCCCeEEEEEEEcc---------------------------
Confidence            88888776532222 3444433 345555557788888887776655442100                           


Q ss_pred             CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (473)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd  388 (473)
                                                   ++.                  .-..++.+.+. +|+..|..-.+..|.+.|
T Consensus       145 -----------------------------~g~------------------~~~~lNeLe~~-~G~lyanvw~s~~I~vID  176 (243)
T 3mbr_X          145 -----------------------------GGR------------------PLDNLNELEWV-NGELLANVWLTSRIARID  176 (243)
T ss_dssp             -----------------------------TTE------------------ECCCEEEEEEE-TTEEEEEETTTTEEEEEC
T ss_pred             -----------------------------CCc------------------ccccceeeEEe-CCEEEEEECCCCeEEEEE
Confidence                                         000                  00112333433 566555554567899999


Q ss_pred             CCCCceEEEeeCC-------------ccCEEEEEEecCCCEEEEEeC
Q 011978          389 GTTGKFVAVFRGH-------------VGPVYQISWSADSRLLLSGSK  422 (473)
Q Consensus       389 ~~~~~~~~~~~~h-------------~~~v~~v~~sp~g~~l~s~s~  422 (473)
                      ..+|+.+..+.-.             ....+.++|+|+++.|...++
T Consensus       177 p~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          177 PASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            9999988776521             135789999998776666653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.19  E-value=0.0023  Score=57.52  Aligned_cols=222  Identities=9%  Similarity=0.034  Sum_probs=119.7

Q ss_pred             EEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecC--C-eEEEEECCCCc
Q 011978          196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD--C-TIKVWETTQGK  272 (473)
Q Consensus       196 v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d--~-~i~~wd~~~~~  272 (473)
                      ..++.|.+     ++..+++...++.|..||....... ... .......+++.+++.++.+...  + .|..+|..+++
T Consensus        34 pegia~~~-----~g~lyv~d~~~~~I~~~d~~g~~~~-~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           34 LENLASAP-----DGTIFVTNHEVGEIVSITPDGNQQI-HAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             EEEEEECT-----TSCEEEEETTTTEEEEECTTCCEEE-EEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             cceEEECC-----CCCEEEEeCCCCeEEEECCCCceEE-EEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            34555544     2334555556777888877654322 221 1235778899988876665532  2 46667777765


Q ss_pred             eeeeeecc-CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978          273 LIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ  351 (473)
Q Consensus       273 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  351 (473)
                      ........ ......++..+                                    ....+++...++.++.+|......
T Consensus       107 ~~~~~~~~~~~~~~g~~~~~------------------------------------~~~~~v~d~~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITPLS------------------------------------DTQYLTADSYRGAIWLIDVVQPSG  150 (306)
T ss_dssp             EEEEEECTTCSCEEEEEESS------------------------------------SSEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEEeCCCccccCcccccC------------------------------------CCcEEEEECCCCeEEEEeCCCCcE
Confidence            43221110 00011111100                                    011234444567777777542110


Q ss_pred             Cee---------eecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCCC-Cce--EEEeeCCccCEEEEEEecCCCEEE
Q 011978          352 PKT---------RMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTT-GKF--VAVFRGHVGPVYQISWSADSRLLL  418 (473)
Q Consensus       352 ~~~---------~~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~-~~~--~~~~~~h~~~v~~v~~sp~g~~l~  418 (473)
                      ...         .....-...+.+  +|++++|..+ +..+.|..+|... ++.  ...+.. ......++++++|++.+
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~v  227 (306)
T 2p4o_A          151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYG  227 (306)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEE
T ss_pred             eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEE
Confidence            000         000111234455  7888766555 4567899999864 331  112211 12345688999998877


Q ss_pred             EEeCCCcEEEEECCCCce--eecccccCCCEEEEEEe---eCCCEEEEEeC
Q 011978          419 SGSKDSTLKVWDIRTQKL--KQDLPGHADEVFAVDWS---PDGEKVASGGK  464 (473)
Q Consensus       419 s~s~Dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~s---~d~~~l~s~~~  464 (473)
                      +....+.|.++|.. ++.  +..+........+++|.   ||++.|..++.
T Consensus       228 a~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          228 ATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             ECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            77778899999976 444  22333333568899998   89877765554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.18  E-value=0.0004  Score=71.01  Aligned_cols=158  Identities=11%  Similarity=0.064  Sum_probs=92.9

Q ss_pred             cCCcc-cEEEEEEC-CCCCeEEEEeC-C----CeEEEEeCCCC-ceeEE-EcCCCCCEEEEEECCCCCeEEEEecC----
Q 011978          105 AGHTE-AVLSVAFS-PDGRQLASGSG-D----TTVRLWDLNTQ-TPMFK-CTGHKNWVLCIAWSADGKHLVSGSKA----  171 (473)
Q Consensus       105 ~gh~~-~V~~~~~s-p~~~~lat~s~-d----~~i~iwd~~~~-~~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~d----  171 (473)
                      .+|.- .+...+|| |||++||.+.. +    .+|+++|+.++ +.+.. +.   .....+.|+|||+.|+....+    
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLR  245 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence            34553 67889999 99999886532 2    35999999988 53211 11   113467899999988887765    


Q ss_pred             -CeEEEeeCCCCccccccC-C-CcCCcEEEEEeceeccCCCCceEEEeeC---CCcEEEEECCCC--eE--EEEecCccc
Q 011978          172 -GELQCWDPQTGKPSGNPL-S-GHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLR--KC--VICLSGHTL  241 (473)
Q Consensus       172 -g~i~iwd~~~~~~~~~~~-~-~~~~~v~~i~~~~~~~~~~~~~~~s~s~---dg~i~iwd~~~~--~~--~~~~~~h~~  241 (473)
                       ..|+++++.++......+ . ........+.|+|     ++.+++..+.   ...|.++|+.++  ..  .....+...
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~  320 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-----DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG  320 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-----TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-----CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence             368888887764321111 1 2223455666665     5556654442   346778888765  22  222233344


Q ss_pred             cEEEEEecCCCeE-EEeecC----CeEEEEECCC
Q 011978          242 AVTCVKWGGDGVI-YTGSQD----CTIKVWETTQ  270 (473)
Q Consensus       242 ~v~~~~~~~~~~l-~s~~~d----~~i~~wd~~~  270 (473)
                      ...++.|..++.| +....+    ..|..+|+.+
T Consensus       321 ~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          321 VRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             ceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            5556665544544 444333    3566667654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.99  E-value=0.016  Score=57.42  Aligned_cols=347  Identities=10%  Similarity=-0.014  Sum_probs=172.3

Q ss_pred             ccEEEEEECCCCCeEEEE-eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec--CCeEEEeeCCCCccc
Q 011978          109 EAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPS  185 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~-s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~--dg~i~iwd~~~~~~~  185 (473)
                      .....+++.+.++.|+.+ ...+.|.+.++.+..........-.....|++.|.+..|+....  .+.|...+++.... 
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-  162 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-  162 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence            467889999977766655 46789999999765433323233344567889887666665543  35677666653221 


Q ss_pred             cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEE
Q 011978          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV  265 (473)
Q Consensus       186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~  265 (473)
                      .......-...+++++.+.    ....+++-+..+.|...|+..........+.......+++..+..+++-...+.|..
T Consensus       163 ~~l~~~~~~~P~Glald~~----~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~  238 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYE----EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILA  238 (619)
T ss_dssp             EEEECSSCSSEEEEEEETT----TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEE
T ss_pred             EEEEeCCCCCCcEEEEEcc----CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEE
Confidence            1122222345567776542    223444445566788887764332222221111123456665644555556788999


Q ss_pred             EECCCCceeeeeeccCceEEEEEe-ccccee----ee----cccc------CC--CcccCCHHHHHHHHHhhhhcccCCC
Q 011978          266 WETTQGKLIRELKGHGHWVNSLAL-STEYAL----RT----GAFD------HT--GKQYSSPEEMKKAALERYNKIKGNA  328 (473)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~----~~----~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~  328 (473)
                      .|..+|+....+.........+.+ ++....    .+    +...      ..  +.....+..... ..+......+ .
T Consensus       239 ~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l-~~d~~~C~~~-~  316 (619)
T 3s94_A          239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKL-LENGKTCKDG-A  316 (619)
T ss_dssp             EESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCB-CTTSSCBCSS-C
T ss_pred             EECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchhee-cccCcccCCC-C
Confidence            998887665544332211222222 111000    00    0000      00  000000000000 0000000000 1


Q ss_pred             CceEEEecCCceEEEEeCCCCCCCeeeec-CcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeCCccCEE
Q 011978          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (473)
Q Consensus       329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~h~~~v~  406 (473)
                      ...|+.+ ..+.|+..++.........+. ..-..+..++|++.+..|..+. ..+.|+.++.........+........
T Consensus       317 ~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~  395 (619)
T 3s94_A          317 TELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD  395 (619)
T ss_dssp             SEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             ceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC
Confidence            1122222 234455555543322111111 1223467899998655555544 567899998875444444443345667


Q ss_pred             EEEEecCCCE-EEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978          407 QISWSADSRL-LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       407 ~v~~sp~g~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      .+++.+.+.. ..+-+..+.|.+.++........+...-....++++.|...+|..++
T Consensus       396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD  453 (619)
T 3s94_A          396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTD  453 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEE
T ss_pred             ceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEec
Confidence            8999875554 44445567899998875433222222334567888888644444443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.97  E-value=0.01  Score=54.37  Aligned_cols=243  Identities=10%  Similarity=0.001  Sum_probs=126.3

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCCccccc
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGN  187 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~~~~~~  187 (473)
                      +...|.+..+++ +|+.+ ....|+..++.+......... ......++|++.+..|+... ..+.|+.+++..+.....
T Consensus        34 d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  110 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  110 (349)
T ss_dssp             TSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CCCcccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence            344566666644 33333 345688888876544333333 34478999998666666554 568899999876542211


Q ss_pred             cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeec-C-CeEE
Q 011978          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ-D-CTIK  264 (473)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~-d-~~i~  264 (473)
                       .........++++.+.    .+..+++-...+.|.+.++..................+++++ ++.|+.... . +.|.
T Consensus       111 -~~~~~~~p~glavd~~----~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~  185 (349)
T 3v64_C          111 -VSTGLESPGGLAVDWV----HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  185 (349)
T ss_dssp             -ECSSCSCCCEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             -EeCCCCCccEEEEecC----CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence             1111122234444321    223444555566777777654432222222223445566664 334433322 1 3333


Q ss_pred             EEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978          265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (473)
Q Consensus       265 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  344 (473)
                      .++.... .                                                                       
T Consensus       186 r~~~dG~-~-----------------------------------------------------------------------  193 (349)
T 3v64_C          186 ASSMDGS-G-----------------------------------------------------------------------  193 (349)
T ss_dssp             EEETTSC-S-----------------------------------------------------------------------
T ss_pred             EEeCCCC-C-----------------------------------------------------------------------
Confidence            3332110 0                                                                       


Q ss_pred             eCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC
Q 011978          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD  423 (473)
Q Consensus       345 d~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D  423 (473)
                             ........-...+.|+++|++..|..+. ..+.|..+|+........+.........+++ ..+....+-...
T Consensus       194 -------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~  265 (349)
T 3v64_C          194 -------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT  265 (349)
T ss_dssp             -------CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred             -------cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCC
Confidence                   0000001123467899998766665554 4567999987654333333334456677888 345555555566


Q ss_pred             CcEEEEECCCCceeec
Q 011978          424 STLKVWDIRTQKLKQD  439 (473)
Q Consensus       424 g~i~iwd~~~~~~~~~  439 (473)
                      +.|..+|..+++....
T Consensus       266 ~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          266 KSINSANKFTGKNQEI  281 (349)
T ss_dssp             TEEEEEETTTCCSCEE
T ss_pred             CeEEEEEccCCCccEE
Confidence            7788888655554333

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.97  E-value=0.0098  Score=53.95  Aligned_cols=110  Identities=10%  Similarity=0.120  Sum_probs=66.9

Q ss_pred             cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee-C---CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978          359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-G---HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       359 ~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~-~---h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                      ....+..+++.+++++++. +.+|.+++.+...|+.-..+. .   +...+.++.+.+++..++++. +|.| .+....+
T Consensus       203 ~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG  279 (327)
T 2xbg_A          203 TSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG  279 (327)
T ss_dssp             SSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred             CCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence            3456788999999886654 457877776433233222221 1   223588999998887777654 6766 3444444


Q ss_pred             ceeeccc---ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          435 KLKQDLP---GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       435 ~~~~~~~---~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +.-..+.   .....++++.|.++++ ++.++.+|.|.-+.
T Consensus       280 ~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          280 QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             SSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             cccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            3322222   2235678898986654 66777788776553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.94  E-value=0.013  Score=54.57  Aligned_cols=218  Identities=7%  Similarity=-0.077  Sum_probs=116.6

Q ss_pred             eeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEe-ecCCeEEEEECCCCceeeeeeccCceEEEEEecccc
Q 011978          216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY  293 (473)
Q Consensus       216 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~  293 (473)
                      .+....|+..++..........+ ......++|++ ++.|+.. ...+.|..++...+.....+.........+++.+. 
T Consensus        92 ~~~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~-  169 (386)
T 3v65_B           92 FANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV-  169 (386)
T ss_dssp             EECBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETT-
T ss_pred             eecCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeC-
Confidence            34446777788776554443333 33467888885 4555544 45678888887654322211111111111222110 


Q ss_pred             eeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc
Q 011978          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (473)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~  373 (473)
                                                        ....+++-...+.|.+.++.... ..............++++|.+.
T Consensus       170 ----------------------------------~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g  214 (386)
T 3v65_B          170 ----------------------------------HDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEG  214 (386)
T ss_dssp             ----------------------------------TTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTT
T ss_pred             ----------------------------------CCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCC
Confidence                                              11123344445566666554322 2222223335678999999766


Q ss_pred             EEEEEE-CC-CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccccCCCEEEE
Q 011978          374 WVASAS-FD-KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAV  450 (473)
Q Consensus       374 ~lasgs-~d-~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l  450 (473)
                      .|.... .. +.|..++.................+.++|+|++..|..+. ..+.|..+|+........+........++
T Consensus       215 ~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gi  294 (386)
T 3v65_B          215 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI  294 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEE
T ss_pred             eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEE
Confidence            555544 34 6788888764433333333345678999998777666554 46679999987543332232223345677


Q ss_pred             EEeeCCCEEEEEeCCCcEEec
Q 011978          451 DWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       451 ~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      ++ ..+..+++-...+.|..+
T Consensus       295 av-~~~~ly~td~~~~~V~~~  314 (386)
T 3v65_B          295 TV-FEDSLYWTDWHTKSINSA  314 (386)
T ss_dssp             EE-ETTEEEEEETTTTEEEEE
T ss_pred             EE-ECCEEEEeeCCCCeEEEE
Confidence            77 344444554455555443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.90  E-value=0.014  Score=53.53  Aligned_cols=215  Identities=7%  Similarity=-0.078  Sum_probs=114.1

Q ss_pred             CCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEe-ecCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978          218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (473)
Q Consensus       218 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (473)
                      ....|+..++..........+. .....++|++ ++.|+.. ...+.|..++...+.....+.........+++.+.   
T Consensus        51 ~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~---  126 (349)
T 3v64_C           51 NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV---  126 (349)
T ss_dssp             CBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT---
T ss_pred             cccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecC---
Confidence            3445666776655444333332 3467888885 4555544 45678888887654322211111111122322211   


Q ss_pred             eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE
Q 011978          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV  375 (473)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l  375 (473)
                                                      ....+++-...+.|.+.++.... ..............++++|.+..|
T Consensus       127 --------------------------------~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~l  173 (349)
T 3v64_C          127 --------------------------------HDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTI  173 (349)
T ss_dssp             --------------------------------TTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEE
T ss_pred             --------------------------------CCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeE
Confidence                                            11223444455667777654322 222222333457899999966555


Q ss_pred             EEE-ECC-CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccccCCCEEEEEE
Q 011978          376 ASA-SFD-KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDW  452 (473)
Q Consensus       376 asg-s~d-~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~  452 (473)
                      ... ... +.|..+++................+.++++|++..|..+. ..+.|..+|+........+........++++
T Consensus       174 y~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav  253 (349)
T 3v64_C          174 YWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  253 (349)
T ss_dssp             EEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             EEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence            544 344 6788888764333222233345678999998777666554 4668999998754332222222334567777


Q ss_pred             eeCCCEEEEEeCCCcEEe
Q 011978          453 SPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       453 s~d~~~l~s~~~D~~i~~  470 (473)
                       ..+..+++-...+.|..
T Consensus       254 -~~~~ly~td~~~~~V~~  270 (349)
T 3v64_C          254 -FEDSLYWTDWHTKSINS  270 (349)
T ss_dssp             -ETTEEEEEETTTTEEEE
T ss_pred             -ECCEEEEecCCCCeEEE
Confidence             33444444444455543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.83  E-value=0.02  Score=54.12  Aligned_cols=153  Identities=11%  Similarity=0.113  Sum_probs=87.2

Q ss_pred             cEEEEEECC-CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC-C----eEEEeeCCCCc
Q 011978          110 AVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G----ELQCWDPQTGK  183 (473)
Q Consensus       110 ~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d-g----~i~iwd~~~~~  183 (473)
                      ....++++| ++..|..+...+.|+.+|+.++....... .......++|+++|+.|+.+... +    .+...+. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            456789998 46666666555889999998765433332 34557889999999967666542 2    2333333 222


Q ss_pred             ccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-cCccccEEEEEecCCCe-EEEe-ec
Q 011978          184 PSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAVTCVKWGGDGV-IYTG-SQ  259 (473)
Q Consensus       184 ~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~-~~  259 (473)
                      ... ..+.. .....++++.|.    .+..+++-..++.|..+|...+...... .+.......++|++++. |+.+ ..
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~----~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPI----NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTT----TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             eeeeeeecc-CCCceEEEEeCC----CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence            110 00000 111223333321    3344555556788999998876542211 12223456789998874 5544 46


Q ss_pred             CCeEEEEECC
Q 011978          260 DCTIKVWETT  269 (473)
Q Consensus       260 d~~i~~wd~~  269 (473)
                      .+.|..++..
T Consensus       291 ~~~I~~~~~d  300 (430)
T 3tc9_A          291 QHYILRSDYD  300 (430)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEeCC
Confidence            6788887654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.79  E-value=0.023  Score=52.78  Aligned_cols=241  Identities=11%  Similarity=-0.040  Sum_probs=125.2

Q ss_pred             EEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE
Q 011978          155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI  234 (473)
Q Consensus       155 ~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~  234 (473)
                      |.+..++ ..|+.+ ....|+..++..+.... ... ......+++|.+.    ....+.+-...+.|..+++.......
T Consensus        81 C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~-~~~-~~~~~~gl~~d~~----~~~ly~~D~~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           81 CKALGPE-PVLLFA-NRIDIRQVLPHRSEYTL-LLN-NLENAIALDFHHR----RELVFWSDVTLDRILRANLNGSNVEE  152 (386)
T ss_dssp             EEECSSC-CEEEEE-CBSCEEEECTTSCCCEE-EEC-SCSCEEEEEEETT----TTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred             ECCcccc-ceeEee-cCccceeeccCCCcEEE-Eec-CCCccEEEEEecC----CCeEEEEeCCCCcEEEEecCCCCcEE
Confidence            4444442 334333 33568888876544221 122 2234677777652    23345555667788888887654333


Q ss_pred             EecCccccEEEEEecC-CCeE-EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978          235 CLSGHTLAVTCVKWGG-DGVI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (473)
Q Consensus       235 ~~~~h~~~v~~~~~~~-~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (473)
                      ...........+++++ ++.| ++-...+.|.+.++........+.........+++.+..                   
T Consensus       153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~-------------------  213 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME-------------------  213 (386)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTT-------------------
T ss_pred             EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCC-------------------
Confidence            3322222334556654 3444 444556677777765332221122121223444444321                   


Q ss_pred             HHHHHHhhhhcccCCCCceEEEecCC-ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCC
Q 011978          313 MKKAALERYNKIKGNAPERLVSGSDD-FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGT  390 (473)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~  390 (473)
                                      ...+++-... +.|...++.... ........-...+.|+++|++..|..+. ..+.|..+|+.
T Consensus       214 ----------------g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          214 ----------------GTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             ----------------TEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             ----------------CeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence                            0112222222 455555544321 1112222234578999998766666554 45789999986


Q ss_pred             CCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc
Q 011978          391 TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL  440 (473)
Q Consensus       391 ~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~  440 (473)
                      .......+.........+++ ..+..+.+-...+.|..+|..+++....+
T Consensus       277 G~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          277 GSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             SCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            54433334434456678888 44555555556778888886666554444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.76  E-value=0.021  Score=51.45  Aligned_cols=75  Identities=13%  Similarity=-0.015  Sum_probs=47.2

Q ss_pred             ceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978          362 LVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK  437 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~  437 (473)
                      ..+.++++|++..|..+. ..+.|..+|+..........+.......+++.. +..+.+-...+.|..+|..+++..
T Consensus       167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence            457899998766666554 457899998864333223333445567777753 344445555678888888666543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.76  E-value=0.0097  Score=53.57  Aligned_cols=187  Identities=12%  Similarity=0.200  Sum_probs=115.7

Q ss_pred             eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce-
Q 011978          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-  331 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  331 (473)
                      .++.....+.+.+||+ +|+.+..+..  ..++.+.+-+...+.                             +..-+. 
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~-----------------------------g~~~dla   89 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLN-----------------------------GKKVDIA   89 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEET-----------------------------TEEEEEE
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccC-----------------------------CceEeEE
Confidence            5666677789999999 8888887753  445666655432210                             000111 


Q ss_pred             EEEecC--CceEEEEeCCCCCCCeeeecC------c-ccceeEEEE--CCC-Cc-EEEEEECCCcEEEEeCC-------C
Q 011978          332 LVSGSD--DFTMFLWEPAVSKQPKTRMTG------H-QQLVNHVYF--SPD-GQ-WVASASFDKSIKLWNGT-------T  391 (473)
Q Consensus       332 l~~~~~--d~~i~iwd~~~~~~~~~~~~~------~-~~~v~~v~~--sp~-g~-~lasgs~d~~v~lwd~~-------~  391 (473)
                      +++...  ++++.+|++............      . ...+..+|+  +|. ++ +++....+|.+..|++.       +
T Consensus        90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~  169 (355)
T 3amr_A           90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS  169 (355)
T ss_dssp             EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred             EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence            344444  678999966432222322211      1 145666777  774 44 67778888999998872       3


Q ss_pred             CceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC-----CCceeeccc-ccC-CCEEEEEE--eeCCC-EEEE
Q 011978          392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR-----TQKLKQDLP-GHA-DEVFAVDW--SPDGE-KVAS  461 (473)
Q Consensus       392 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~-----~~~~~~~~~-~h~-~~i~~l~~--s~d~~-~l~s  461 (473)
                      .+.++.|... +.+-.+...+...+|+.+-.|..|..++.+     +.+.+..+. ++- ..+-.|+.  .++++ +|+.
T Consensus       170 ~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv  248 (355)
T 3amr_A          170 GKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA  248 (355)
T ss_dssp             EEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred             ceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence            3556676643 467788888888899999998777777755     233443332 222 36777877  56666 5554


Q ss_pred             Ee-CCCcEEecc
Q 011978          462 GG-KDRVLKLWM  472 (473)
Q Consensus       462 ~~-~D~~i~~w~  472 (473)
                      ++ .+++..+|.
T Consensus       249 SsQG~~s~~Vyd  260 (355)
T 3amr_A          249 SSQGNSSYAIYD  260 (355)
T ss_dssp             EEGGGTEEEEEE
T ss_pred             EcCCCCEEEEEE
Confidence            44 667777764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.74  E-value=0.017  Score=49.83  Aligned_cols=198  Identities=11%  Similarity=0.175  Sum_probs=111.1

Q ss_pred             ecCccccEEEEEecCC-CeEEE-eecCCeEEEEECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978          236 LSGHTLAVTCVKWGGD-GVIYT-GSQDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (473)
Q Consensus       236 ~~~h~~~v~~~~~~~~-~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (473)
                      +.|-...+..++|+++ +.|++ ...++.|...|.. ++.++.+...+ .....+++..+..                  
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~------------------   82 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ------------------   82 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE------------------
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE------------------
Confidence            4455567899999975 45554 6678889999987 77777664321 2333444332211                  


Q ss_pred             HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC--eeee------cCcccceeEEEECCCCcEEEEEECCCcE
Q 011978          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--KTRM------TGHQQLVNHVYFSPDGQWVASASFDKSI  384 (473)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~------~~~~~~v~~v~~sp~g~~lasgs~d~~v  384 (473)
                                        .+++.-.++.+.+++.......  ....      .........++|+|+++.|.++......
T Consensus        83 ------------------~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~  144 (255)
T 3qqz_A           83 ------------------FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPI  144 (255)
T ss_dssp             ------------------EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSE
T ss_pred             ------------------EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCc
Confidence                              1233233445555544322210  0000      1123446899999998777666655444


Q ss_pred             EEEeCC---CCceEEEee-------CCccCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceee--ccc-cc------C
Q 011978          385 KLWNGT---TGKFVAVFR-------GHVGPVYQISWSADSR-LLLSGSKDSTLKVWDIRTQKLKQ--DLP-GH------A  444 (473)
Q Consensus       385 ~lwd~~---~~~~~~~~~-------~h~~~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~~~~~~--~~~-~h------~  444 (473)
                      .+|...   ....+..+.       .+...+.+++++|... +++.....+.+.++|.... .+.  .+. +.      -
T Consensus       145 ~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~  223 (255)
T 3qqz_A          145 EVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNI  223 (255)
T ss_dssp             EEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCC
T ss_pred             eEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCccccc
Confidence            555443   111222221       1233568899999654 4555556677888997654 322  333 21      1


Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          445 DEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       445 ~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ..--.++|.++|+.+++ ++-+.+..|.
T Consensus       224 ~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          224 KQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             CSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             CCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            25578999999985555 6666665553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.74  E-value=0.0035  Score=64.10  Aligned_cols=130  Identities=12%  Similarity=0.140  Sum_probs=69.8

Q ss_pred             eEEEEeCCCCCCC-eeeec-CcccceeEEEECCCCcEEEEEECC---CcEEEEeCCCC--ce--EEEeeCCccCEEEEEE
Q 011978          340 TMFLWEPAVSKQP-KTRMT-GHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTG--KF--VAVFRGHVGPVYQISW  410 (473)
Q Consensus       340 ~i~iwd~~~~~~~-~~~~~-~~~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~~--~~--~~~~~~h~~~v~~v~~  410 (473)
                      .|+.+++...... ..... ........+.|||||++|+..+.+   ..|.++|+.++  +.  ........+...++.|
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~  327 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM  327 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence            5666665443211 11111 222345678999999998876633   36888898875  33  3333344455566666


Q ss_pred             ecCCCEEEEEeCC--C--cEEEEECCCCceeec-ccccCC--CEEEEEEeeCCCE-EEEEeCCCcEEec
Q 011978          411 SADSRLLLSGSKD--S--TLKVWDIRTQKLKQD-LPGHAD--EVFAVDWSPDGEK-VASGGKDRVLKLW  471 (473)
Q Consensus       411 sp~g~~l~s~s~D--g--~i~iwd~~~~~~~~~-~~~h~~--~i~~l~~s~d~~~-l~s~~~D~~i~~w  471 (473)
                      +.++.+++....+  +  .|..+|+.+...... +-.|..  .+..+.+  +++. +++...|+..+||
T Consensus       328 ~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          328 HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEE
T ss_pred             eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEE
Confidence            5444444444443  2  566777764222122 222333  3444444  4444 4566677766665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.60  E-value=0.038  Score=50.02  Aligned_cols=271  Identities=8%  Similarity=-0.032  Sum_probs=133.0

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---eeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~---~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      ...+.++.|.+++..+++ +.++.|.. ....++   ++.. .......+.++.|.+ + .++.++..+.|+. ..+.|+
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCC
Confidence            346899999888887774 45676533 333332   1110 111234688999976 3 4555566675544 222233


Q ss_pred             cccccC--CCcCCcEEEEEeceeccCCCCceEEEeeCCCcE-EEEECCCCe-EEEEecCccccEEEEEecCCCeEEEeec
Q 011978          184 PSGNPL--SGHKKWITGISWEPVHLNAPCRRFVSASKDGDA-RIWDVSLRK-CVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (473)
Q Consensus       184 ~~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i-~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~l~s~~~  259 (473)
                      .-....  ..+...+..+.+.+     +. .++.++.++.+ +-.|  .++ -.....+....+..+.+.+++.++..+.
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~-----~~-~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~  181 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALG-----NG-SAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS  181 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEE-----TT-EEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEET
T ss_pred             CceECccccCCCCCeEEEEEEC-----CC-CEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEEC
Confidence            211111  11223455555432     22 33344445544 2222  122 1222234455788888988887766666


Q ss_pred             CCeEEEEECCCCceeeee-eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          260 DCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      ++.+..-+-..|..-..+ ......+..+.+.++                                     ..++..+.+
T Consensus       182 ~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~-------------------------------------g~~~~~~~~  224 (327)
T 2xbg_A          182 RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPD-------------------------------------GRLWMIVNG  224 (327)
T ss_dssp             TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTT-------------------------------------SCEEEEETT
T ss_pred             CCcEEEEeCCCCCceeECCCCCCCccceeEECCC-------------------------------------CCEEEEeCC
Confidence            666544321112211111 112223334433322                                     123344445


Q ss_pred             ceEEEEeCCCC---CCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee---CCccCEEEEEEec
Q 011978          339 FTMFLWEPAVS---KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR---GHVGPVYQISWSA  412 (473)
Q Consensus       339 ~~i~iwd~~~~---~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~---~h~~~v~~v~~sp  412 (473)
                      +.++..+....   .........+...+.++++.+++.+++.+. ++.+ ++....|+.-..+.   .....+.++.|.+
T Consensus       225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~  302 (327)
T 2xbg_A          225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS  302 (327)
T ss_dssp             TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE
T ss_pred             ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC
Confidence            55555421100   000000001223578899999888777665 6666 44555554333333   1234678899986


Q ss_pred             CCCEEEEEeCCCcEEEEEC
Q 011978          413 DSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       413 ~g~~l~s~s~Dg~i~iwd~  431 (473)
                      +++ ++.++.+|.|.-++-
T Consensus       303 ~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          303 PDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             TTE-EEEECSTTEEEEECC
T ss_pred             CCc-eEEEcCCceEEEEcC
Confidence            655 555667898776653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.56  E-value=0.0052  Score=61.80  Aligned_cols=70  Identities=13%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             EEEECCCCCeEEEEe-CCCeEEEEeCCCCceeE--EEcCCCCCEEEEEECCCCCeEEEEe-cC-----CeEEEeeCCCCc
Q 011978          113 SVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGS-KA-----GELQCWDPQTGK  183 (473)
Q Consensus       113 ~~~~sp~~~~lat~s-~d~~i~iwd~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~s~~-~d-----g~i~iwd~~~~~  183 (473)
                      ++++.++++.++.|+ .+..+.+||..+.+=..  .+.. ...-.+++..++|+.++.|+ .+     ..+.+||+.+.+
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            467788999999988 45689999987653111  1111 12224556667899999988 44     468999987765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.55  E-value=0.059  Score=50.89  Aligned_cols=153  Identities=11%  Similarity=0.069  Sum_probs=80.9

Q ss_pred             cEEEEEECCC--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC-----eEEEeeCCCC
Q 011978          110 AVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQTG  182 (473)
Q Consensus       110 ~V~~~~~sp~--~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg-----~i~iwd~~~~  182 (473)
                      ....++++|+  ...|..+...+.|+.+|..++.... +.........++|+++|+ |+.+...+     .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            4568999995  4455555444899999997765433 333445588999999999 55444321     1333332211


Q ss_pred             ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--cCccccEEEEEecCCCe-EEEe-e
Q 011978          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDGV-IYTG-S  258 (473)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~-l~s~-~  258 (473)
                      ......+. .-....++++.|    ..+..+++-..++.|..+|..++.....+  .+....-..+++++++. |+.+ .
T Consensus       218 ~~~~~~~~-~~~~P~giavd~----~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHP----QNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECT----TTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred             eecccccc-ccCCCCEEEEeC----CCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence            10000000 001111222222    02344455556678888888766542211  11122234688888873 5544 4


Q ss_pred             cCCeEEEEECC
Q 011978          259 QDCTIKVWETT  269 (473)
Q Consensus       259 ~d~~i~~wd~~  269 (473)
                      ..+.|+.++..
T Consensus       293 ~~~~I~~~~~d  303 (433)
T 4hw6_A          293 GKHCIYRVDYN  303 (433)
T ss_dssp             TTTEEEEEEBC
T ss_pred             CCCEEEEEeCC
Confidence            55778877654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.55  E-value=0.05  Score=51.41  Aligned_cols=138  Identities=12%  Similarity=0.161  Sum_probs=79.0

Q ss_pred             EEEecCCceEEEEeCCCCCCCeee-ecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCC--CCce--EEEeeCC----
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGT--TGKF--VAVFRGH----  401 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~--~~~~--~~~~~~h----  401 (473)
                      +++...++.|+.++.......... ..+.......++|+|+|++|..+ ...+.|+.++..  ++..  ...+.+.    
T Consensus       243 yv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~  322 (433)
T 4hw6_A          243 YYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP  322 (433)
T ss_dssp             EECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCC
Confidence            334445667777776533210111 11112233469999999955554 456789998765  3322  1122111    


Q ss_pred             -----------ccCEEEEEE---------ecCCCEEEEEeCCCcEEEEECCCCceeeccccc------------------
Q 011978          402 -----------VGPVYQISW---------SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH------------------  443 (473)
Q Consensus       402 -----------~~~v~~v~~---------sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h------------------  443 (473)
                                 ......+++         .++|.+.++-...+.|+.++. .+... ++.+.                  
T Consensus       323 g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~  400 (433)
T 4hw6_A          323 GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQAL  400 (433)
T ss_dssp             CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCB
T ss_pred             ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccE
Confidence                       124677999         667777666666778999985 34332 11111                  


Q ss_pred             CCCEEEEEEe-eCCCEEEEEeCCCcEEec
Q 011978          444 ADEVFAVDWS-PDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       444 ~~~i~~l~~s-~d~~~l~s~~~D~~i~~w  471 (473)
                      -..-..|+++ ++|..+++=...++|+..
T Consensus       401 ~~~P~giavd~~~g~lyVaD~~n~rIr~i  429 (433)
T 4hw6_A          401 FNHPTSIAYDMKRKCFYIGDCDNHRVRKI  429 (433)
T ss_dssp             CSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             eCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            1236789999 677666666667777764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.50  E-value=0.05  Score=48.92  Aligned_cols=215  Identities=11%  Similarity=-0.026  Sum_probs=113.8

Q ss_pred             CCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEe-ecCCeEEEEECCCC---ceeeee-eccCceEEEEEecc
Q 011978          218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTG-SQDCTIKVWETTQG---KLIREL-KGHGHWVNSLALST  291 (473)
Q Consensus       218 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~-~~d~~i~~wd~~~~---~~~~~~-~~~~~~v~~~~~~~  291 (473)
                      ....|+..|+........... ......+.|+++ +.|+.+ ...+.|..++....   .....+ .........+++.+
T Consensus         8 ~~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~   86 (316)
T 1ijq_A            8 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW   86 (316)
T ss_dssp             CBSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             CCCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence            345688888877655444332 345678888864 455544 45688888887641   111111 11101112222221


Q ss_pred             cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC
Q 011978          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD  371 (473)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~  371 (473)
                      .                                   ....+++-...+.|.+.++.... ..............++++|.
T Consensus        87 ~-----------------------------------~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~  130 (316)
T 1ijq_A           87 I-----------------------------------HSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPV  130 (316)
T ss_dssp             T-----------------------------------TTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETT
T ss_pred             c-----------------------------------CCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCC
Confidence            0                                   11223444556677777754321 12222223346789999996


Q ss_pred             CcEEEEEECC--CcEEEEeCCCCceEEEe-eCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeeccc--ccCC
Q 011978          372 GQWVASASFD--KSIKLWNGTTGKFVAVF-RGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLP--GHAD  445 (473)
Q Consensus       372 g~~lasgs~d--~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~--~h~~  445 (473)
                      +..|......  +.|...+.. |.....+ .......+.++++|++..|+.+. ..+.|..+|+..........  +...
T Consensus       131 ~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~  209 (316)
T 1ijq_A          131 HGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA  209 (316)
T ss_dssp             TTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTS
T ss_pred             CCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccC
Confidence            6655554432  678888875 3333333 23345688999999877766654 45689999987533221111  1123


Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          446 EVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       446 ~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      ...++++. .+..+++-...+.|..+
T Consensus       210 ~P~giav~-~~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          210 HPFSLAVF-EDKVFWTDIINEAIFSA  234 (316)
T ss_dssp             SEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             CcEEEEEE-CCEEEEEECCCCeEEEE
Confidence            35677774 34444555455555543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.42  E-value=0.05  Score=46.92  Aligned_cols=116  Identities=15%  Similarity=0.153  Sum_probs=69.5

Q ss_pred             EcCCCCCEEEEEECCCCCeEEE-EecCCeEEEeeCCCCcccccc-CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEE
Q 011978          146 CTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (473)
Q Consensus       146 ~~~~~~~v~~l~~s~dg~~l~s-~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~  223 (473)
                      +.+-...+..++|+|+++.|++ ...++.|...|.+ ++..... +.+ .....++++.+     ++..+++.-.++.+.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~-----~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIG-----DNQFVISDERDYAIY   94 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECS-----TTEEEEEETTTTEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeC-----CCEEEEEECCCCcEE
Confidence            3455567999999998776665 6667889999987 6544332 222 23456666543     333445545667788


Q ss_pred             EEECCCCeE---EEEe------cCccccEEEEEecCCC-eEEEeecCCeEEEEEC
Q 011978          224 IWDVSLRKC---VICL------SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWET  268 (473)
Q Consensus       224 iwd~~~~~~---~~~~------~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~  268 (473)
                      ++++.....   +...      ...+.....++|++++ .|+++.......+|.+
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            887654331   1111      1234456889998876 5666655444445544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.31  E-value=0.088  Score=47.34  Aligned_cols=137  Identities=7%  Similarity=-0.031  Sum_probs=77.2

Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC--CCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~--d~~v~lwd~~~~~~~~~~~~h~~~v~~v~  409 (473)
                      +++-...+.|.+.++.... ..............++++|.+.+|.....  .+.|...+.................+.++
T Consensus        94 y~~d~~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngla  172 (318)
T 3sov_A           94 YWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT  172 (318)
T ss_dssp             EEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEECCCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence            3444455677777764322 22222233456789999997666655542  56788888764332222333345678999


Q ss_pred             EecCCCEEEEEe-CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978          410 WSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  470 (473)
Q Consensus       410 ~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~  470 (473)
                      |+|++..|..+. ..+.|..+|+........+.+......++++.. +..+.+-...+.|..
T Consensus       173 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~  233 (318)
T 3sov_A          173 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILA  233 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence            999777666654 567899999875333222222233456666643 233344334445543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.31  E-value=0.081  Score=49.91  Aligned_cols=139  Identities=6%  Similarity=0.067  Sum_probs=74.7

Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCCC--Cce--EEEeeCC-----
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTT--GKF--VAVFRGH-----  401 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~--~~~--~~~~~~h-----  401 (473)
                      +++-..++.|..++............+.....+.++|+|+|++|... ...+.|..++...  ++.  ...+.+.     
T Consensus       241 yv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g  320 (430)
T 3tc9_A          241 YFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKD  320 (430)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBC
T ss_pred             EEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCC
Confidence            44555567788887653321111111222457789999999955554 4567899887652  222  1222111     


Q ss_pred             ----------ccCEE-EEEEe--------cCCCEEEEEeCCCcEEEEECCCCceeecc-------cc----------cCC
Q 011978          402 ----------VGPVY-QISWS--------ADSRLLLSGSKDSTLKVWDIRTQKLKQDL-------PG----------HAD  445 (473)
Q Consensus       402 ----------~~~v~-~v~~s--------p~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-------~~----------h~~  445 (473)
                                ..... .++..        ++|.+.++-...+.|+.++. .++.....       .+          .-.
T Consensus       321 ~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~  399 (430)
T 3tc9_A          321 WVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFN  399 (430)
T ss_dssp             CBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCS
T ss_pred             CCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeC
Confidence                      11223 45553        33555555555677888874 34332211       11          012


Q ss_pred             CEEEEEEeeC-CCEEEEEeCCCcEEec
Q 011978          446 EVFAVDWSPD-GEKVASGGKDRVLKLW  471 (473)
Q Consensus       446 ~i~~l~~s~d-~~~l~s~~~D~~i~~w  471 (473)
                      .-..++++|+ +..+++-...++|+..
T Consensus       400 ~P~giavd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          400 HPEGIVYDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             SEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             CCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            4678999995 5555555566777654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.29  E-value=0.093  Score=47.14  Aligned_cols=228  Identities=12%  Similarity=0.032  Sum_probs=121.3

Q ss_pred             CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCC---ccccccCCCcCCcEEEEEecee
Q 011978          129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPV  204 (473)
Q Consensus       129 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~  204 (473)
                      ...|+..|+.+........ .......++|++++..|+.+. ..+.|+.+++...   ......+...-....++++.+.
T Consensus         9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            3568888888765443333 334578999998766666554 5689999998751   1111111111122345554321


Q ss_pred             ccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeecC--CeEEEEECCCCceeeee-ecc
Q 011978          205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQD--CTIKVWETTQGKLIREL-KGH  280 (473)
Q Consensus       205 ~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d--~~i~~wd~~~~~~~~~~-~~~  280 (473)
                          ....+++-...+.|.+.|...................+++++ ++.++.+...  +.|...+.. |.....+ ...
T Consensus        88 ----~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~  162 (316)
T 1ijq_A           88 ----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTEN  162 (316)
T ss_dssp             ----TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSS
T ss_pred             ----CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECC
Confidence                223455556678888888875443333333334567888886 5666655543  577777754 3322222 112


Q ss_pred             CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeec--C
Q 011978          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--G  358 (473)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~  358 (473)
                      -..-+.++++++.                                   ...+++-+..+.|..+|...... .....  .
T Consensus       163 ~~~P~gla~d~~~-----------------------------------~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~  206 (316)
T 1ijq_A          163 IQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGNR-KTILEDEK  206 (316)
T ss_dssp             CSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCSC-EEEEECTT
T ss_pred             CCCceEEEEeccC-----------------------------------CEEEEEECCCCeEEEEecCCCce-EEEeecCC
Confidence            2233445544321                                   11234444556777777653221 11111  1


Q ss_pred             cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee
Q 011978          359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (473)
Q Consensus       359 ~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~  399 (473)
                      .......+++. .+.+..+-...+.|..+|..+|+.+..+.
T Consensus       207 ~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          207 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             ccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            12345677775 35555555566788888887776655554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.25  E-value=0.006  Score=61.59  Aligned_cols=79  Identities=10%  Similarity=0.001  Sum_probs=47.8

Q ss_pred             ceeEEEECCCCcEEEEE-ECCCcEEEEeCCCCceEEEee--CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978          362 LVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFR--GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ  438 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~  438 (473)
                      ..+.|+|+|++..|..+ +..+.|..+|+........+.  ........|++..+ .++++....+.|..+|..+++...
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence            45678999876555544 456789999986433322222  11223345555443 444555567789999988777666


Q ss_pred             ccc
Q 011978          439 DLP  441 (473)
Q Consensus       439 ~~~  441 (473)
                      .+.
T Consensus       620 ~i~  622 (699)
T 1n7d_A          620 LLA  622 (699)
T ss_dssp             CCC
T ss_pred             Eee
Confidence            554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.17  E-value=0.13  Score=46.41  Aligned_cols=79  Identities=16%  Similarity=0.239  Sum_probs=51.9

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCC-----CCceEEEee-CCc-cCEEEEEE--ecCCC-EEEEEe-CCCcEEEEE
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGT-----TGKFVAVFR-GHV-GPVYQISW--SADSR-LLLSGS-KDSTLKVWD  430 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~-----~~~~~~~~~-~h~-~~v~~v~~--sp~g~-~l~s~s-~Dg~i~iwd  430 (473)
                      .+..+.+.+....|..+-.|..|..++.+     +++.+..+. ++. .-+..+++  .++++ +|+++| .+++..+||
T Consensus       181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            35567778888888999888766666744     344555542 222 35777877  45665 566555 577899999


Q ss_pred             CC-CCceeecc
Q 011978          431 IR-TQKLKQDL  440 (473)
Q Consensus       431 ~~-~~~~~~~~  440 (473)
                      .. +.+.+..+
T Consensus       261 r~~~~~~vg~f  271 (355)
T 3amr_A          261 RQGKNKYVADF  271 (355)
T ss_dssp             SSTTCCEEEEE
T ss_pred             CCCCCcEEEEE
Confidence            96 55555444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.15  E-value=0.12  Score=46.02  Aligned_cols=70  Identities=17%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             eeEEEECCCCcEEEEEECC-CcEEEEeCCCCceEEEee------CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          363 VNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFR------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       363 v~~v~~sp~g~~lasgs~d-~~v~lwd~~~~~~~~~~~------~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      .+.+++.++|+.-++++.- +.|...+.... .+..+.      ......+.++++|+|+.|++...+|.+..+|+..
T Consensus       139 ~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          139 VVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            6678888888888888877 77777776533 222221      1122367899999999888887799999999874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.08  E-value=0.19  Score=46.84  Aligned_cols=221  Identities=10%  Similarity=-0.024  Sum_probs=118.1

Q ss_pred             EEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEe-ecCCeEEEEECCCCc----eeeeeeccCceEEE
Q 011978          213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGK----LIRELKGHGHWVNS  286 (473)
Q Consensus       213 ~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~-~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~  286 (473)
                      ++.-+....|+..|+.......... ....+..++|++ ++.|+.+ ...+.|+.+++....    ....+.........
T Consensus        85 ~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            3334445778888887655443333 345677888886 4555554 456778888765421    11111111112233


Q ss_pred             EEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEE
Q 011978          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV  366 (473)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v  366 (473)
                      +++.+.                                   ....+++-...+.|.+.++.... ..............|
T Consensus       164 lavD~~-----------------------------------~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~i  207 (400)
T 3p5b_L          164 LAVDWI-----------------------------------HSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAI  207 (400)
T ss_dssp             EEEETT-----------------------------------TTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEE
T ss_pred             EEEEec-----------------------------------CCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceE
Confidence            333221                                   11223444455666666654322 222222233457899


Q ss_pred             EECCCCcEEEEEEC--CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccc-
Q 011978          367 YFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPG-  442 (473)
Q Consensus       367 ~~sp~g~~lasgs~--d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~-  442 (473)
                      +++|.+.+|.....  .+.|...++................+.|+++|++..|+.+. ..+.|..+|+........+.. 
T Consensus       208 avdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~  287 (400)
T 3p5b_L          208 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE  287 (400)
T ss_dssp             EEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS
T ss_pred             EEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC
Confidence            99997666655542  36788888764443333343445789999999887777664 456899999875433222221 


Q ss_pred             -cCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          443 -HADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       443 -h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                       ....-.+++.. .+..+.+-...+.|..+
T Consensus       288 ~~l~~P~gl~v~-~~~lywtd~~~~~V~~~  316 (400)
T 3p5b_L          288 KRLAHPFSLAVF-EDKVFWTDIINEAIFSA  316 (400)
T ss_dssp             STTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred             CCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence             22334566663 23344444444555543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.07  E-value=0.44  Score=50.85  Aligned_cols=72  Identities=18%  Similarity=0.164  Sum_probs=47.4

Q ss_pred             cccEEEEEECCC------CCeEEEEeC-CCeEEEEeCCCCceeEEEc-CCCCCEEEEEEC--CCCCeEEEEecCCeEEEe
Q 011978          108 TEAVLSVAFSPD------GRQLASGSG-DTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWS--ADGKHLVSGSKAGELQCW  177 (473)
Q Consensus       108 ~~~V~~~~~sp~------~~~lat~s~-d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s--~dg~~l~s~~~dg~i~iw  177 (473)
                      .+.|.|+++.|.      ++++|.|.. |++|+|+++.+-.++.... +-+....++.+.  ....+|..|-.||.+..+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999864      368999996 9999999998765543321 111233343332  233578888899997655


Q ss_pred             eC
Q 011978          178 DP  179 (473)
Q Consensus       178 d~  179 (473)
                      .+
T Consensus       633 ~~  634 (1158)
T 3ei3_A          633 GL  634 (1158)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.06  E-value=0.29  Score=48.54  Aligned_cols=343  Identities=11%  Similarity=0.028  Sum_probs=169.9

Q ss_pred             cEEEEEECCCCCeEEEE-eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec--CCeEEEeeCCCCcccc
Q 011978          110 AVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPSG  186 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~-s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~--dg~i~iwd~~~~~~~~  186 (473)
                      ....+++.+.+..|..+ ...+.|.+.++.+..........-..-..+++.|....|+....  .+.|...++...... 
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-  159 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-  159 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-
Confidence            45678898877766554 45688999998765433223233345689999986666665542  467877777543321 


Q ss_pred             ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEE
Q 011978          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW  266 (473)
Q Consensus       187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w  266 (473)
                      ... ..-...+++++.+.    ....+++-...+.|...|+...... .+.........+++..+.++++-...+.|...
T Consensus       160 ~l~-~~~~~P~GlalD~~----~~~LY~aD~~~~~I~~~d~dG~~~~-v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~  233 (628)
T 4a0p_A          160 TLV-PNVGRANGLTIDYA----KRRLYWTDLDTNLIESSNMLGLNRE-VIADDLPHPFGLTQYQDYIYWTDWSRRSIERA  233 (628)
T ss_dssp             EEE-CSCSSEEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCE-EEEECCSCEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             EEE-CCCCCcceEEEccc----cCEEEEEECCCCEEEEEcCCCCceE-EeeccCCCceEEEEECCEEEEecCCCCEEEEE
Confidence            111 22345567766542    1234445456677888887653321 22222223446666654444455567889999


Q ss_pred             ECCCCceeeeeeccCceEEEEEe-ccccee--eecccc-CCCcccC--CHHHHHH-HHHhhh----hcccCCC-CceEEE
Q 011978          267 ETTQGKLIRELKGHGHWVNSLAL-STEYAL--RTGAFD-HTGKQYS--SPEEMKK-AALERY----NKIKGNA-PERLVS  334 (473)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~~-~~~~~~~--~~~~~~~-~~~~~~----~~~~~~~-~~~l~~  334 (473)
                      |..+|+....+.........+.+ ++....  ..+... +....+.  .+..... .....+    ....... ...++.
T Consensus       234 dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~  313 (628)
T 4a0p_A          234 NKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLF  313 (628)
T ss_dssp             ETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEE
T ss_pred             ECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeee
Confidence            98777655544432222222221 111000  000000 0000000  0000000 000000    0000000 112222


Q ss_pred             ecCCceEEEEeCCCCCCCeeeec-CcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeC------CccCEE
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRG------HVGPVY  406 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~------h~~~v~  406 (473)
                      + ....|+-..+.........+. ..-..+..++|++....|..+. ..+.|+.++.........+..      ....+.
T Consensus       314 s-~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~  392 (628)
T 4a0p_A          314 S-QKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY  392 (628)
T ss_dssp             E-ETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEE
T ss_pred             e-ccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcc
Confidence            2 223344333322211111111 1224577899999766666554 457788888764433333322      234688


Q ss_pred             EEEEecCCCEEE-EEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEE
Q 011978          407 QISWSADSRLLL-SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA  460 (473)
Q Consensus       407 ~v~~sp~g~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~  460 (473)
                      .+++...++.|. +-+..+.|.+.++........+........++++.|...+|.
T Consensus       393 glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly  447 (628)
T 4a0p_A          393 DLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMY  447 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             eEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEE
Confidence            999998866555 555677899998864322222222335678888888433443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.93  E-value=0.44  Score=48.55  Aligned_cols=216  Identities=12%  Similarity=-0.010  Sum_probs=112.1

Q ss_pred             EeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEE-EeecCCeEEEEECCCCc----eeeeeeccCceEEEEE
Q 011978          215 SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIY-TGSQDCTIKVWETTQGK----LIRELKGHGHWVNSLA  288 (473)
Q Consensus       215 s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~-s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~  288 (473)
                      ..+....|+..++..........+ ...+..++|+. ++.|+ +-...+.|+.+++....    ....+.........++
T Consensus       399 l~an~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA  477 (791)
T 3m0c_C          399 FFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  477 (791)
T ss_dssp             EEECBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             ccccccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence            334456677777765544333332 34566778875 45554 44455677777765321    1111110111112222


Q ss_pred             ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEE
Q 011978          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF  368 (473)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~  368 (473)
                      +...                                   ....+++-...+.|.+.++.... ..............|++
T Consensus       478 vD~~-----------------------------------~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaV  521 (791)
T 3m0c_C          478 VDWI-----------------------------------HSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVV  521 (791)
T ss_dssp             EETT-----------------------------------TTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEE
T ss_pred             eeec-----------------------------------CCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEE
Confidence            2211                                   11234455556677777764322 12222223345789999


Q ss_pred             CCCCcEEEEEEC-C-CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccc--c
Q 011978          369 SPDGQWVASASF-D-KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPG--H  443 (473)
Q Consensus       369 sp~g~~lasgs~-d-~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~--h  443 (473)
                      +|.+.+|..... . +.|...++........+.......+.|++++.+..|+.+. ..+.|...++........+.+  .
T Consensus       522 Dp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~  601 (791)
T 3m0c_C          522 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR  601 (791)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred             ecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCc
Confidence            997666655543 2 6788888865444344444446789999998777776664 456799999875443332222  1


Q ss_pred             CCCEEEEEEeeCCCEEEEEe-CCCcEE
Q 011978          444 ADEVFAVDWSPDGEKVASGG-KDRVLK  469 (473)
Q Consensus       444 ~~~i~~l~~s~d~~~l~s~~-~D~~i~  469 (473)
                      -....+|++.  +.+|..+. ..+.|.
T Consensus       602 l~~P~glav~--~~~lYwtD~~~~~I~  626 (791)
T 3m0c_C          602 LAHPFSLAVF--EDKVFWTDIINEAIF  626 (791)
T ss_dssp             TSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             cCCCCEEEEe--CCEEEEEECCCCEEE
Confidence            2234566653  33444443 334443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.92  E-value=0.24  Score=45.25  Aligned_cols=59  Identities=14%  Similarity=0.182  Sum_probs=37.6

Q ss_pred             CEEEEEEecCCCEEEEEeCCCcEEEEECCCCce------eecccccCCCEEEEEEeeCCCEEEEEe
Q 011978          404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL------KQDLPGHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       404 ~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~------~~~~~~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      ....++| .+|.++++.-..+.|...++.....      ...+-.....+..+++.|||..+++..
T Consensus       269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            4567787 5676666655666777777654321      122212235789999999998777654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.89  E-value=0.28  Score=45.66  Aligned_cols=246  Identities=11%  Similarity=0.007  Sum_probs=131.4

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCCc---cccccCCCcCCcEE
Q 011978          122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGK---PSGNPLSGHKKWIT  197 (473)
Q Consensus       122 ~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~~---~~~~~~~~~~~~v~  197 (473)
                      +|+.+ ....|+..++.+........ ....+..|+|++.+..|+... ..+.|+.+++....   ..............
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            44443 34688988987664433333 345688999998766666554 46789989886521   11111222223445


Q ss_pred             EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeec--CCeEEEEECCCCcee
Q 011978          198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLI  274 (473)
Q Consensus       198 ~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~--d~~i~~wd~~~~~~~  274 (473)
                      ++++.+.    ....+++-...+.|.+.++........+.........+++++ ++.|+....  .+.|...++......
T Consensus       163 glavD~~----~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          163 GLAVDWI----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             EEEEETT----TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             cEEEEec----CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            5555431    223455556677888888876544443433344567888886 456665543  367777776532222


Q ss_pred             eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978          275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (473)
Q Consensus       275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  354 (473)
                      ..+...-..-+.+++++..                                   ....++-.....|...|...... ..
T Consensus       239 ~~~~~~l~~P~glavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~dG~~~-~~  282 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGNR-KT  282 (400)
T ss_dssp             EEECSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCCC-EE
T ss_pred             EEEECCCCceEEEEEEeCC-----------------------------------CEEEEEECCCCEEEEEeCCCCcc-EE
Confidence            2122222334455554321                                   11233334455666666543222 12


Q ss_pred             eecC--cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978          355 RMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW  410 (473)
Q Consensus       355 ~~~~--~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~  410 (473)
                      ....  .......+++. .+.++.+-...+.|..+|..+|+.+..+........+++.
T Consensus       283 ~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v  339 (400)
T 3p5b_L          283 ILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL  339 (400)
T ss_dssp             EEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred             EEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence            1111  12334566663 3445555556678998998788776666544444555543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.89  E-value=0.082  Score=48.73  Aligned_cols=107  Identities=13%  Similarity=0.135  Sum_probs=74.5

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCc------------eEEEeeC------CccCEEEEEEecC---CCEEEEE
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------------FVAVFRG------HVGPVYQISWSAD---SRLLLSG  420 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~------------~~~~~~~------h~~~v~~v~~sp~---g~~l~s~  420 (473)
                      .+..+..+|+|++||..+. ..|.|-.+..+.            ....+.-      ...+|..+.|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            5788999999999999865 578888776321            1223322      2467999999995   4589999


Q ss_pred             eCCCcEEEEECCCCc--ee--------ecccccCCCEEEEEEeeCCCEEEEE--eCCCcEE
Q 011978          421 SKDSTLKVWDIRTQK--LK--------QDLPGHADEVFAVDWSPDGEKVASG--GKDRVLK  469 (473)
Q Consensus       421 s~Dg~i~iwd~~~~~--~~--------~~~~~h~~~i~~l~~s~d~~~l~s~--~~D~~i~  469 (473)
                      ..|+.|++||+....  ..        ..+......|.+++|.+++-.|...  +.+|-|.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence            999999999997521  11        0112233678899999988766554  4666654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.88  E-value=0.066  Score=47.77  Aligned_cols=140  Identities=13%  Similarity=0.080  Sum_probs=92.2

Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecC-----c-ccceeEEEE---CCCCcEEEEEE-------------CCCcEEEEeC
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTG-----H-QQLVNHVYF---SPDGQWVASAS-------------FDKSIKLWNG  389 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~-~~~v~~v~~---sp~g~~lasgs-------------~d~~v~lwd~  389 (473)
                      +++.-..++|..|++.........+.+     . ...+..|.+   .|+++++++..             .++.|..+|+
T Consensus        28 ~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl  107 (334)
T 2p9w_A           28 YQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNL  107 (334)
T ss_dssp             EEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEES
T ss_pred             EEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcC
Confidence            445557899999987533222222221     1 124578999   68988888644             2677999999


Q ss_pred             C---CCceEEEee--CC-----------ccCEEEEEEecCCCEEEEEeCC-CcEEEEECCCCceeec---c--cccCCCE
Q 011978          390 T---TGKFVAVFR--GH-----------VGPVYQISWSADSRLLLSGSKD-STLKVWDIRTQKLKQD---L--PGHADEV  447 (473)
Q Consensus       390 ~---~~~~~~~~~--~h-----------~~~v~~v~~sp~g~~l~s~s~D-g~i~iwd~~~~~~~~~---~--~~h~~~i  447 (473)
                      .   +++.+....  ..           ....++++..++|+..++++.- +.|...+........-   .  .......
T Consensus       108 ~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~  187 (334)
T 2p9w_A          108 PLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGY  187 (334)
T ss_dssp             SCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSC
T ss_pred             CcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCc
Confidence            8   777654433  11           1358899999999999988887 8777777654322110   0  1111235


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEec
Q 011978          448 FAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       448 ~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      +.++++|||+.|+....++.|.-+
T Consensus       188 nGIv~~pdg~~Liv~~~~g~L~~f  211 (334)
T 2p9w_A          188 SGITFDPHSNKLIAFGGPRALTAF  211 (334)
T ss_dssp             SEEEEETTTTEEEEESSSSSEEEE
T ss_pred             ceEEEeCCCCEEEEEcCCCeEEEE
Confidence            689999999999888778877654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.74  E-value=0.62  Score=47.47  Aligned_cols=158  Identities=11%  Similarity=0.034  Sum_probs=85.6

Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE-ecCCeEEEeeCCCCcc---ccccCCCcCCcEEEEEece
Q 011978          128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKP---SGNPLSGHKKWITGISWEP  203 (473)
Q Consensus       128 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~-~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~  203 (473)
                      ....|+..++.......... ....+..|+|.+.+..|+.. ...+.|+.+++.....   ....+........++++.+
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            34568888877654333333 34567889999865556544 4557898888864211   1111221222334555443


Q ss_pred             eccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEeec--CCeEEEEECCCCceeeeeecc
Q 011978          204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ--DCTIKVWETTQGKLIRELKGH  280 (473)
Q Consensus       204 ~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~  280 (473)
                      .    ....+++-...+.|.+.++........+.........|++++. +.|+....  .+.|...++........+...
T Consensus       481 ~----~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~  556 (791)
T 3m0c_C          481 I----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  556 (791)
T ss_dssp             T----TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred             c----CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC
Confidence            2    1245566667788999988765443333334445778888875 66666543  267777776533222222222


Q ss_pred             CceEEEEEec
Q 011978          281 GHWVNSLALS  290 (473)
Q Consensus       281 ~~~v~~~~~~  290 (473)
                      -.+-..+++.
T Consensus       557 l~~P~GLavD  566 (791)
T 3m0c_C          557 IQWPNGITLD  566 (791)
T ss_dssp             CSCEEEEEEE
T ss_pred             CCCceEEEEe
Confidence            2344455544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.64  E-value=0.5  Score=45.02  Aligned_cols=153  Identities=13%  Similarity=0.133  Sum_probs=86.3

Q ss_pred             cEEEEEECC-CCCeEEEEe-CCCeEEEEeCCCCceeEEEcCC---CCCEEEEEE-------CCCCCeEEEEecCC-----
Q 011978          110 AVLSVAFSP-DGRQLASGS-GDTTVRLWDLNTQTPMFKCTGH---KNWVLCIAW-------SADGKHLVSGSKAG-----  172 (473)
Q Consensus       110 ~V~~~~~sp-~~~~lat~s-~d~~i~iwd~~~~~~~~~~~~~---~~~v~~l~~-------s~dg~~l~s~~~dg-----  172 (473)
                      ....|+|+| +...|+.+. ..+.|++.|.+++.........   -.....++|       +++|+.|+.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899999 455555554 4467999998887654433322   234789999       99999777776554     


Q ss_pred             --eEEEeeCCC-Ccccc----ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC-------CCeE------
Q 011978          173 --ELQCWDPQT-GKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LRKC------  232 (473)
Q Consensus       173 --~i~iwd~~~-~~~~~----~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~-------~~~~------  232 (473)
                        .|.+.+... +....    ..+... ....+++..|    .....+++-..++.|..+|+.       ++..      
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp----~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHP----INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECT----TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcC----CCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence              266665433 22110    001000 0112222222    123455566677889999986       4432      


Q ss_pred             --------EEEecCccccEEEEEecCCCe-EEEe-ecCCeEEEEEC
Q 011978          233 --------VICLSGHTLAVTCVKWGGDGV-IYTG-SQDCTIKVWET  268 (473)
Q Consensus       233 --------~~~~~~h~~~v~~~~~~~~~~-l~s~-~~d~~i~~wd~  268 (473)
                              +... +....-..++|++++. |+.+ ...+.|+.++.
T Consensus       295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence                    1222 2223456789998874 4544 45567777553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.63  E-value=0.012  Score=59.40  Aligned_cols=137  Identities=13%  Similarity=-0.029  Sum_probs=70.4

Q ss_pred             EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-C-CcEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-D-KSIKLWNGTTGKFVAVFRGHVGPVYQISW  410 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d-~~v~lwd~~~~~~~~~~~~h~~~v~~v~~  410 (473)
                      ++-...+.|.+.++.... ..............|+++|.+.+|+.... . +.|..+++................+.|+|
T Consensus       469 ~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlav  547 (699)
T 1n7d_A          469 WTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL  547 (699)
T ss_dssp             ECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEE
T ss_pred             EEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEE
Confidence            333445667777654321 11112222234677899997665554432 2 67877776533222222222345678999


Q ss_pred             ecCCCEEEEE-eCCCcEEEEECCCCceeeccc--ccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          411 SADSRLLLSG-SKDSTLKVWDIRTQKLKQDLP--GHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       411 sp~g~~l~s~-s~Dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      +|++..|+.+ +..+.|..+|+........+.  +......+|++..+ ..+++....+.|..+
T Consensus       548 d~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~  610 (699)
T 1n7d_A          548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA  610 (699)
T ss_dssp             CTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred             eccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence            9976655544 456789999987533222221  11122234455433 344444445566554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.60  E-value=0.31  Score=44.97  Aligned_cols=143  Identities=17%  Similarity=0.211  Sum_probs=89.5

Q ss_pred             CCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCC----CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc------
Q 011978          117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH----KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG------  186 (473)
Q Consensus       117 sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~----~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~------  186 (473)
                      ..+|..++.+. ++.||.-++........+...    -..|..+..||+|++|+..+. ..|.+-.+-.+....      
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            45666666654 478888888754433333221    225778999999999888754 577776655221100      


Q ss_pred             -------ccC----CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC--eEEEEec---------CccccEE
Q 011978          187 -------NPL----SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLS---------GHTLAVT  244 (473)
Q Consensus       187 -------~~~----~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~--~~~~~~~---------~h~~~v~  244 (473)
                             ..+    ......|..+.|+|...+  +..+++-..|+.|++||+...  +.. .+.         .....|.
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~--ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~  183 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR--DSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT  183 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGG--GCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCC--CCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence                   000    012467999999997764  457899999999999999752  111 222         2335678


Q ss_pred             EEEecCCCe-EEEee--cCCeEE
Q 011978          245 CVKWGGDGV-IYTGS--QDCTIK  264 (473)
Q Consensus       245 ~~~~~~~~~-l~s~~--~d~~i~  264 (473)
                      +++|.+++. |+..+  ..|.|+
T Consensus       184 S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          184 DLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             EEEECTTSSCEEEEECTTSCEEE
T ss_pred             EEEEcCCCcEEEEEecCCCCCEE
Confidence            888888763 55533  556654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.39  E-value=0.55  Score=42.65  Aligned_cols=101  Identities=13%  Similarity=0.119  Sum_probs=62.8

Q ss_pred             cceeEEEECCCCcEEEEEEC-----------------CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe-C
Q 011978          361 QLVNHVYFSPDGQWVASASF-----------------DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-K  422 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs~-----------------d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~  422 (473)
                      ...+.+++.++|++.++...                 .|.|.-+|.  ++.. .+...-..-+.++||||++.|+.+. .
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~  241 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELL  241 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCC
Confidence            45788999999998887641                 234555554  3322 2222334678999999998877665 5


Q ss_pred             CCcEEEEECCC-Cce--eecccccCCCEEEEEEee-CCCEEEEEeCC
Q 011978          423 DSTLKVWDIRT-QKL--KQDLPGHADEVFAVDWSP-DGEKVASGGKD  465 (473)
Q Consensus       423 Dg~i~iwd~~~-~~~--~~~~~~h~~~i~~l~~s~-d~~~l~s~~~D  465 (473)
                      .+.|+.|++.. ++.  ...+. .....-.++..+ +|++.+++..+
T Consensus       242 ~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          242 AHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred             CCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence            67899999863 322  11221 123345677787 48776665533

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.18  E-value=1.1  Score=44.23  Aligned_cols=102  Identities=8%  Similarity=0.011  Sum_probs=59.5

Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC--CCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~--d~~v~lwd~~~~~~~~~~~~h~~~v~~v~  409 (473)
                      .++-+..+.|.+.++.... ........-...+.|++.|...+|.....  ...|...++................+.|+
T Consensus       407 Y~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~Gla  485 (619)
T 3s94_A          407 YWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLA  485 (619)
T ss_dssp             EEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeE
Confidence            3444455666666654332 11222223356789999997444444432  35676666653322223333456788999


Q ss_pred             EecCCCEEEEEeC-CCcEEEEECCCC
Q 011978          410 WSADSRLLLSGSK-DSTLKVWDIRTQ  434 (473)
Q Consensus       410 ~sp~g~~l~s~s~-Dg~i~iwd~~~~  434 (473)
                      +++++..|+.+.. .+.|..+++...
T Consensus       486 lD~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          486 LDYDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEESSSC
T ss_pred             EcccCCEEEEEECCCCEEEEEecCCC
Confidence            9997777776654 467888888654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.84  E-value=1.3  Score=42.11  Aligned_cols=236  Identities=7%  Similarity=0.052  Sum_probs=123.7

Q ss_pred             cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC---ccccEEEEEe-------cCCCe-EEEeecCC--
Q 011978          195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKW-------GGDGV-IYTGSQDC--  261 (473)
Q Consensus       195 ~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~-------~~~~~-l~s~~~d~--  261 (473)
                      ....+++.|..   ....+++....+.|++.|+..+........   .......++|       ++++. |+.+...+  
T Consensus       140 ~p~~la~dp~~---~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLN---KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTE---EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CCCEEEEccCC---CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            34566666520   123455544456788899888766554432   2235788999       88774 66665443  


Q ss_pred             -----eEEEEECCC-Ccee-----eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978          262 -----TIKVWETTQ-GKLI-----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (473)
Q Consensus       262 -----~i~~wd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (473)
                           .+.+.+... +...     ..+..- .....+++++.                                   ...
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-----------------------------------~g~  260 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-----------------------------------NGE  260 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-----------------------------------TCC
T ss_pred             cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-----------------------------------CCe
Confidence                 255555332 2221     011000 00011111110                                   123


Q ss_pred             eEEEecCCceEEEEeCC-------CCCC-----C-----eee--ecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeC-
Q 011978          331 RLVSGSDDFTMFLWEPA-------VSKQ-----P-----KTR--MTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNG-  389 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~-------~~~~-----~-----~~~--~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~-  389 (473)
                      .+++...++.+..+|+.       ....     +     ...  ..+.......++|+|+|++|..+ +..+.|+.++. 
T Consensus       261 LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          261 LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            45566677788888875       2222     0     111  11223456789999999965554 45678888654 


Q ss_pred             -CCCce--EEEeeCC---c------------cCEE-EEEEe-------cCCCEEEEEeCCCcEEEEECCCCceeeccccc
Q 011978          390 -TTGKF--VAVFRGH---V------------GPVY-QISWS-------ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH  443 (473)
Q Consensus       390 -~~~~~--~~~~~~h---~------------~~v~-~v~~s-------p~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h  443 (473)
                       ..+..  ...+.+.   .            .... .++..       ++|.+.++-.....|+.++. .+.. .++.|.
T Consensus       341 g~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-~TiaG~  418 (496)
T 3kya_A          341 EIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-STYAGR  418 (496)
T ss_dssp             TTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-EEEEES
T ss_pred             CCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-EEEecc
Confidence             33322  1222221   1            1234 45554       45666666566778999884 4432 222211


Q ss_pred             ------------------------CCCEEEEEEeeC-CCEEEEEeCCCcEEec
Q 011978          444 ------------------------ADEVFAVDWSPD-GEKVASGGKDRVLKLW  471 (473)
Q Consensus       444 ------------------------~~~i~~l~~s~d-~~~l~s~~~D~~i~~w  471 (473)
                                              -..-..|+++++ |..+++=...++|+.+
T Consensus       419 g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki  471 (496)
T 3kya_A          419 GASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI  471 (496)
T ss_dssp             CTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence                                    123568999997 6666666667788765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.23  Score=44.78  Aligned_cols=115  Identities=19%  Similarity=0.183  Sum_probs=68.9

Q ss_pred             CeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe-eCCCcEEEEECCCCeEEEEecC---
Q 011978          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSG---  238 (473)
Q Consensus       163 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~-s~dg~i~iwd~~~~~~~~~~~~---  238 (473)
                      ..++.++.||.|.-.|..+|+...........++.... .+. ...++..++.. +.||.+..+|..++.....+.-   
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-~~~-~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-EPS-RLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-CSC-TTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-CCc-cccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            47889999999999999998865433222111111110 000 00122233333 6899999999888755433321   


Q ss_pred             -ccccEEE-----E----EecCCCeEEEeecCCeEEEEECCCCceeeeeec
Q 011978          239 -HTLAVTC-----V----KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       239 -h~~~v~~-----~----~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  279 (473)
                       ...++..     +    ..+.++.+++|+.++.+...|..+|+.+..+..
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence             1111111     0    001467899999999999999999999887753

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.71  E-value=0.087  Score=43.84  Aligned_cols=101  Identities=12%  Similarity=0.111  Sum_probs=62.8

Q ss_pred             cceeEEEECCCCcEEEEEECCCcEEEEeCCCCce------EEEee--CCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF------VAVFR--GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~------~~~~~--~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      ..+..++|+|+|.+.+.  .+|.++-.+..+.+.      -..+-  +-.. -.++.|.|+|.+.++  .||.|+-++-.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            46789999999997777  667777666654221      01110  1111 367889999998887  56988878753


Q ss_pred             CCcee------ecc-cccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978          433 TQKLK------QDL-PGHADEVFAVDWSPDGEKVASGGKDRVL  468 (473)
Q Consensus       433 ~~~~~------~~~-~~h~~~i~~l~~s~d~~~l~s~~~D~~i  468 (473)
                      +....      ..+ .+-=..+..|.|.|+|...+..  |+.+
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            31110      011 1111467899999999877666  6654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.64  E-value=2.9  Score=44.63  Aligned_cols=111  Identities=10%  Similarity=0.028  Sum_probs=62.7

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-EEEcCCCCCEEEEEECCC------CCeEEEEec-CCeEEEeeCCC
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSAD------GKHLVSGSK-AGELQCWDPQT  181 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~d------g~~l~s~~~-dg~i~iwd~~~  181 (473)
                      .|...+.+.  .+++.++ ++.+.++++..+... ..-..-...|.|+++.|.      ++.++.|.. |++++++++.+
T Consensus       515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            455555432  3555554 567777777654211 111123567999999863      368899986 99999999976


Q ss_pred             Cccccc-cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978          182 GKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (473)
Q Consensus       182 ~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~  227 (473)
                      .+.... .+. ......++.....   ....++..|-.||.+.-+.+
T Consensus       592 l~~~~~~~L~-~~~~p~si~l~~~---~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          592 FELLHKEMLG-GEIIPRSILMTTF---ESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             CCEEEEEECC-SSCCEEEEEEEEE---TTEEEEEEEETTSEEEEEEE
T ss_pred             CCeEEEEECC-CCCCCcEEEEEEe---CCCcEEEEEeCCCeEEEEEE
Confidence            543321 111 1122333332221   12245677888888765544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.52  E-value=0.23  Score=45.30  Aligned_cols=99  Identities=13%  Similarity=0.205  Sum_probs=61.1

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCce--EEEee---CCccCEEEEEEecC---CCEEEEEeC-C-----CcEE
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFR---GHVGPVYQISWSAD---SRLLLSGSK-D-----STLK  427 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~--~~~~~---~h~~~v~~v~~sp~---g~~l~s~s~-D-----g~i~  427 (473)
                      ....++|.|+|+++++ ..++.|++++  .++.  +..+.   ........++|+|+   +..|..+.. +     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4678999999996555 5669999998  4442  22111   12356889999998   554444432 2     5688


Q ss_pred             EEECCCCc------eeeccc---ccCCCEEEEEEeeCCCEEEEEe
Q 011978          428 VWDIRTQK------LKQDLP---GHADEVFAVDWSPDGEKVASGG  463 (473)
Q Consensus       428 iwd~~~~~------~~~~~~---~h~~~i~~l~~s~d~~~l~s~~  463 (473)
                      .|+....+      ....++   +.......+.|.|||..+++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            88876431      112233   1111235789999997777654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.42  E-value=1.3  Score=39.05  Aligned_cols=92  Identities=20%  Similarity=0.237  Sum_probs=51.0

Q ss_pred             CCcEEEEEECC-----CcEEEEeCCCCceEEEe--eCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce--
Q 011978          371 DGQWVASASFD-----KSIKLWNGTTGKFVAVF--RGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQKL--  436 (473)
Q Consensus       371 ~g~~lasgs~d-----~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~~--  436 (473)
                      ++++++.|+.+     ..+.+||..+.+....-  .........+.  .++++++.|+.+     ..+.+||+.+.+-  
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            67788887754     45889998877654331  11111112222  266777777654     4689999987543  


Q ss_pred             eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          437 KQDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       437 ~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      +..++.....-..+  .-+++.++.||.++
T Consensus       237 ~~~~p~~r~~~~~~--~~~~~i~v~GG~~~  264 (301)
T 2vpj_A          237 VTSMTTPRCYVGAT--VLRGRLYAIAGYDG  264 (301)
T ss_dssp             ECCCSSCCBSCEEE--EETTEEEEECCBCS
T ss_pred             CCCCCCcccceeEE--EECCEEEEEcCcCC
Confidence            22232211111222  23677778887653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.41  E-value=0.51  Score=42.89  Aligned_cols=132  Identities=10%  Similarity=0.103  Sum_probs=75.1

Q ss_pred             CCceEEEEeCCCCCCCe--eeecC-----cccceeEEEECC--CCc--EEEEEEC--CCcEEEEeCCCC--c--eEEEee
Q 011978          337 DDFTMFLWEPAVSKQPK--TRMTG-----HQQLVNHVYFSP--DGQ--WVASASF--DKSIKLWNGTTG--K--FVAVFR  399 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~--~~~~~-----~~~~v~~v~~sp--~g~--~lasgs~--d~~v~lwd~~~~--~--~~~~~~  399 (473)
                      .+|.|.++|+.......  ..+.+     ..-....+.+.+  ++.  ++++-..  +.+|.+|++...  .  .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            58889999976332211  12222     122455666655  453  4444333  467888876543  2  233444


Q ss_pred             CC-ccCEEEEEEecCCCEEEEEeC-----------------CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEE
Q 011978          400 GH-VGPVYQISWSADSRLLLSGSK-----------------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS  461 (473)
Q Consensus       400 ~h-~~~v~~v~~sp~g~~l~s~s~-----------------Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s  461 (473)
                      +. ....+++.+.++|.+.++...                 .|.|+-+|.  ++.. .+...-..-+.++||||++.|..
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEE
Confidence            32 246899999999998887641                 244555554  3222 22222345689999999988766


Q ss_pred             Ee-CCCcEEec
Q 011978          462 GG-KDRVLKLW  471 (473)
Q Consensus       462 ~~-~D~~i~~w  471 (473)
                      +. ..++|..|
T Consensus       238 adt~~~~I~~~  248 (355)
T 3sre_A          238 AELLAHKIHVY  248 (355)
T ss_dssp             EEGGGTEEEEE
T ss_pred             EeCCCCeEEEE
Confidence            55 45666655

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.34  E-value=1.4  Score=38.89  Aligned_cols=63  Identities=19%  Similarity=0.186  Sum_probs=37.7

Q ss_pred             CCcEEEEEECC-----CcEEEEeCCCCceEEEeeC--CccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCc
Q 011978          371 DGQWVASASFD-----KSIKLWNGTTGKFVAVFRG--HVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQK  435 (473)
Q Consensus       371 ~g~~lasgs~d-----~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~  435 (473)
                      ++++++.|+.+     ..+.+||..+.+....-..  .......+.  -++++++.|+.+     ..+.+||+.+.+
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            67788888764     4689999988765433211  111112222  267777777655     357888887643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.17  E-value=0.72  Score=38.40  Aligned_cols=86  Identities=12%  Similarity=0.099  Sum_probs=48.3

Q ss_pred             CCceEEEEeCCCCCCCee----ee--cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc------eEEEe-eCCcc
Q 011978          337 DDFTMFLWEPAVSKQPKT----RM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------FVAVF-RGHVG  403 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~----~~--~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~------~~~~~-~~h~~  403 (473)
                      .|+.|+-++........-    ..  ..--..+..|.|.|+|.+-|..  |+.++-+...++.      ....+ +....
T Consensus       105 ~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~  182 (236)
T 1tl2_A          105 SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWD  182 (236)
T ss_dssp             ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGG
T ss_pred             CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcc
Confidence            568888887643222110    11  1112467899999999988877  7776544433221      01111 12233


Q ss_pred             CEEEEEEecCCCEEEEEeCCCcE
Q 011978          404 PVYQISWSADSRLLLSGSKDSTL  426 (473)
Q Consensus       404 ~v~~v~~sp~g~~l~s~s~Dg~i  426 (473)
                      .-.-+.|+++|.+.+..  +|.+
T Consensus       183 ~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          183 TFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             GEEEEEECTTSCEEEEE--TTEE
T ss_pred             eEEEEEECCCCcEEEEe--CCeE
Confidence            34457789998877665  6633

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.72  E-value=0.54  Score=42.54  Aligned_cols=102  Identities=17%  Similarity=0.177  Sum_probs=64.0

Q ss_pred             cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE--EEe----eCCccCEEEEEEecC---CCEEEEE---eCCCcEEE
Q 011978          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AVF----RGHVGPVYQISWSAD---SRLLLSG---SKDSTLKV  428 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~--~~~----~~h~~~v~~v~~sp~---g~~l~s~---s~Dg~i~i  428 (473)
                      ...+.++|.|||+++++--..|.|++++...++..  ..+    ....+....++|+|+   +..|...   ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            35678999999998877665899999987666532  212    123457899999995   3344332   23455666


Q ss_pred             EECCCC----------ce-eeccc---ccCCCEEEEEEeeCCCEEEEEeC
Q 011978          429 WDIRTQ----------KL-KQDLP---GHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       429 wd~~~~----------~~-~~~~~---~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      |.....          +. ...++   .|.  -..|.|.|||.++++.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBC
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECC
Confidence            665431          11 11122   232  356899999988787653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.70  E-value=4.3  Score=41.29  Aligned_cols=258  Identities=12%  Similarity=0.099  Sum_probs=130.8

Q ss_pred             CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC
Q 011978          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (473)
Q Consensus       150 ~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~  229 (473)
                      ...|.++.-..+|. |-.|+.+| +..||-.+-+............|.++....      ...+-.++.+| +..+|..+
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~------~g~lWigT~~G-l~~yd~~~   91 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIID------NTYLYMGTDNG-ILVYNYRA   91 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEET------TTEEEEEETTE-EEEEETTT
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcC------CCcEEEEeCCC-eEEEeCCC
Confidence            45688888877774 55566665 556664321111000011233466654221      23455555554 77889877


Q ss_pred             CeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeee----ccCceEEEEEecccceeeeccccCCCc
Q 011978          230 RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK----GHGHWVNSLALSTEYALRTGAFDHTGK  305 (473)
Q Consensus       230 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (473)
                      .+...........|.++.. .++.|..++.+ .+..+|..+++......    .....|.++....              
T Consensus        92 ~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--------------  155 (758)
T 3ott_A           92 DRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK--------------  155 (758)
T ss_dssp             TEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT--------------
T ss_pred             CEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC--------------
Confidence            6432211112234666654 46677777665 67888876654322100    0112233332221              


Q ss_pred             ccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC----cccceeEEEECCCCcEEEEEECC
Q 011978          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG----HQQLVNHVYFSPDGQWVASASFD  381 (473)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~v~~sp~g~~lasgs~d  381 (473)
                                             ...+..++.+| +..++.............    ....|.++...+++..|-.|+. 
T Consensus       156 -----------------------~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-  210 (758)
T 3ott_A          156 -----------------------DNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-  210 (758)
T ss_dssp             -----------------------TCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred             -----------------------CCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence                                   12344444443 555664322110000010    1234788888877664444543 


Q ss_pred             CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc-------ccCCCEEEEEEee
Q 011978          382 KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-------GHADEVFAVDWSP  454 (473)
Q Consensus       382 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-------~h~~~i~~l~~s~  454 (473)
                      +-+..+|..+++...........|.++...++|.+.+. +.+ -+.+++..+++...-..       -....|.++.-..
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~  288 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ  288 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred             CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence            35888898776543221112345888888778876554 344 58888887654321110       0124588887776


Q ss_pred             CCCEE
Q 011978          455 DGEKV  459 (473)
Q Consensus       455 d~~~l  459 (473)
                      +|..-
T Consensus       289 ~g~lW  293 (758)
T 3ott_A          289 EHNIW  293 (758)
T ss_dssp             TCCEE
T ss_pred             CCCEE
Confidence            66543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.66  E-value=0.26  Score=45.02  Aligned_cols=101  Identities=14%  Similarity=0.184  Sum_probs=60.8

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCc-eEEEe---eCCccCEEEEEEecC---CCEEEEEeC----C----CcE
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVF---RGHVGPVYQISWSAD---SRLLLSGSK----D----STL  426 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~-~~~~~---~~h~~~v~~v~~sp~---g~~l~s~s~----D----g~i  426 (473)
                      ....++|.|+|+++++ ..++.|+++| ..++ .+..+   .........++|+|+   +..|..+..    +    +.|
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4678999999985555 5569999997 3454 22221   112356889999998   444444332    3    567


Q ss_pred             EEEECCCC-------ce-eecccc-cCCCEEEEEEeeCCCEEEEEeC
Q 011978          427 KVWDIRTQ-------KL-KQDLPG-HADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       427 ~iwd~~~~-------~~-~~~~~~-h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      ..|+....       +. ...+.. ....-..+.|.|||..+++.+.
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~  154 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD  154 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence            77776543       11 111221 1112357899999987777543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.48  E-value=2.3  Score=37.35  Aligned_cols=63  Identities=19%  Similarity=0.249  Sum_probs=35.7

Q ss_pred             CCcEEEEEECC-----CcEEEEeCCCCceEEEeeC--CccCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCc
Q 011978          371 DGQWVASASFD-----KSIKLWNGTTGKFVAVFRG--HVGPVYQISWSADSRLLLSGSKDS-----TLKVWDIRTQK  435 (473)
Q Consensus       371 ~g~~lasgs~d-----~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~Dg-----~i~iwd~~~~~  435 (473)
                      ++++++.|+.+     ..+.+||..+.+....-..  .......+  ..++++++.|+.++     .+.+||+.+.+
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE--EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            45666666553     3688899887654332111  11111112  23677777777553     48999987654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.18  E-value=0.86  Score=43.12  Aligned_cols=103  Identities=12%  Similarity=0.112  Sum_probs=62.2

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE--EEeeC------CccCEEEEEEecC---CCEEEEEe-C-------
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AVFRG------HVGPVYQISWSAD---SRLLLSGS-K-------  422 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~--~~~~~------h~~~v~~v~~sp~---g~~l~s~s-~-------  422 (473)
                      ..+.++|.|+|+++++-...+.|++++..+++..  ..+..      ..+....|+|+||   +..|..+. .       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            4678999999998877554457888886655432  22221      2456789999995   44444433 2       


Q ss_pred             -----CCcEEEEECCCC-------ce-eecccc-cCCCEEEEEEeeCCCEEEEEeC
Q 011978          423 -----DSTLKVWDIRTQ-------KL-KQDLPG-HADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       423 -----Dg~i~iwd~~~~-------~~-~~~~~~-h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                           ...|.-|+....       +. ...+.. .......+.|.|||+++++.+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                 134555654321       11 111221 1124688999999998777654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.15  E-value=1.3  Score=39.86  Aligned_cols=149  Identities=8%  Similarity=-0.009  Sum_probs=81.3

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCC-CCCEEEEEE--CCCCCeEEEE--ecCCeEEEeeCCCCcccccc-CC--Cc
Q 011978          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNWVLCIAW--SADGKHLVSG--SKAGELQCWDPQTGKPSGNP-LS--GH  192 (473)
Q Consensus       121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~--s~dg~~l~s~--~~dg~i~iwd~~~~~~~~~~-~~--~~  192 (473)
                      ..++.++.||.|.-.|.++++....+... ..++....-  .+.+..++.+  +.||.|+.++..+|...... ..  ..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46788899999999999999888877543 122222110  0112234433  58999999998877432100 00  00


Q ss_pred             CCcEEEEEeceecc----CCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc-------cEEEEEe------cCCCeEE
Q 011978          193 KKWITGISWEPVHL----NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-------AVTCVKW------GGDGVIY  255 (473)
Q Consensus       193 ~~~v~~i~~~~~~~----~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~~~~------~~~~~l~  255 (473)
                      ..++.. .-.|.-.    ......+++|+.+|.+.-.|+.+|+.+..+.....       ...|...      ..++.++
T Consensus        91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence            111111 1111110    00345788999999999999999999988753211       1112221      1234566


Q ss_pred             EeecCCeEEEEECCCC
Q 011978          256 TGSQDCTIKVWETTQG  271 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~  271 (473)
                      .+..+..+.+.+ ++|
T Consensus       170 ig~~~y~v~~~~-~sG  184 (339)
T 2be1_A          170 IGKTIFELGIHS-YDG  184 (339)
T ss_dssp             EEEEEEECEECC-TTS
T ss_pred             EecceEEEEEEC-CCC
Confidence            677666666655 344

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.07  E-value=3.7  Score=38.08  Aligned_cols=243  Identities=10%  Similarity=0.148  Sum_probs=132.9

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK  193 (473)
Q Consensus       114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  193 (473)
                      .-.+|..+.+|--. ..++.|+|++++.++..+.-.+. |.-=.|-.+ +.|+-.+ +..|+-|++.........+..|.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~  146 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecch
Confidence            34678777777654 67999999999888776654443 333344333 3444333 56899999865322211222221


Q ss_pred             ----CcEEEEEeceeccCCCCceEEEee-------CCCcEEEEECCCCeEEEEecCccccEEEEEecCCC---eEEE-ee
Q 011978          194 ----KWITGISWEPVHLNAPCRRFVSAS-------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYT-GS  258 (473)
Q Consensus       194 ----~~v~~i~~~~~~~~~~~~~~~s~s-------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s-~~  258 (473)
                          ..|..  +.   .+.+..+++..|       -.|.+.+|..+.+. -..+.||...-..+...++.   .+++ +.
T Consensus       147 ~L~~~QIIn--Y~---~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~  220 (494)
T 1bpo_A          147 SLAGCQIIN--YR---TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAV  220 (494)
T ss_dssp             GGTTCEEEE--EE---ECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred             hcccceEEE--EE---ECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEE
Confidence                11211  11   122334444221       34678888876543 34567887655555444321   2222 22


Q ss_pred             c---CCeEEEEECCCCc-eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          259 Q---DCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       259 ~---d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      .   .+.+.+-++.... -...+   ......+.+.|                                           
T Consensus       221 r~~~g~kLhi~Ei~~~~~~~~~f---~kk~vdv~fpp-------------------------------------------  254 (494)
T 1bpo_A          221 RGQAGGKLHIIEVGTPPTGNQPF---PKKAVDVFFPP-------------------------------------------  254 (494)
T ss_dssp             CSTTCCEEEEEECSCCCTTCCCC---CCEEEECCCCT-------------------------------------------
T ss_pred             ecCCCcEEEEEEcCCCccCCCCc---cceeeeeeCCc-------------------------------------------
Confidence            2   1445444442110 00000   00000000000                                           


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS  414 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g  414 (473)
                                            ....+-.-++.+|+....+..-..-|.+++||++++.++..-+-...+|..-+-+...
T Consensus       255 ----------------------e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~  312 (494)
T 1bpo_A          255 ----------------------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT  312 (494)
T ss_dssp             ----------------------TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT
T ss_pred             ----------------------ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCC
Confidence                                  0112234567788888888888999999999999999988877667777766666555


Q ss_pred             CEEEEEeCCCcEEEEECCCC
Q 011978          415 RLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd~~~~  434 (473)
                      .-++.....|.|.--.+...
T Consensus       313 ~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          313 AGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             TEEEEEETTCEEEEEEECTT
T ss_pred             CcEEEEccCceEEEEEEccc
Confidence            55666667777766666543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.01  E-value=3  Score=36.69  Aligned_cols=92  Identities=18%  Similarity=0.254  Sum_probs=49.7

Q ss_pred             CCcEEEEEECC-------CcEEEEeCCCCceEEE--eeCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce
Q 011978          371 DGQWVASASFD-------KSIKLWNGTTGKFVAV--FRGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQKL  436 (473)
Q Consensus       371 ~g~~lasgs~d-------~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~~  436 (473)
                      ++++++.|+.+       ..+.+||..+.+....  +.........+.  -++++++.|+.+     ..+.+||+.+.+-
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence            66777777643       3588999887754432  111111112222  267777777654     3689999987543


Q ss_pred             --eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          437 --KQDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       437 --~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                        +..++.....-..+  .-+++.++.||.++
T Consensus       233 ~~~~~~~~~r~~~~~~--~~~~~i~v~GG~~~  262 (302)
T 2xn4_A          233 RQVADMNMCRRNAGVC--AVNGLLYVVGGDDG  262 (302)
T ss_dssp             EEECCCSSCCBSCEEE--EETTEEEEECCBCS
T ss_pred             eeCCCCCCccccCeEE--EECCEEEEECCcCC
Confidence              22222111111122  23677888887664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.85  E-value=3.7  Score=37.25  Aligned_cols=61  Identities=15%  Similarity=0.133  Sum_probs=40.0

Q ss_pred             cceeEEEEC-------CCCcEEEEEECCCcEEEEeCCCC-ceE--EE-eeCCccCEEEEEEecCCCEEEEEe
Q 011978          361 QLVNHVYFS-------PDGQWVASASFDKSIKLWNGTTG-KFV--AV-FRGHVGPVYQISWSADSRLLLSGS  421 (473)
Q Consensus       361 ~~v~~v~~s-------p~g~~lasgs~d~~v~lwd~~~~-~~~--~~-~~~h~~~v~~v~~sp~g~~l~s~s  421 (473)
                      .....++|.       .+|.++++.-..+.|...++... +..  .. +.+-...+..+++.|||.+.++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            356778883       57777777666778888887643 322  22 223345788999999997666553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.84  E-value=3.2  Score=36.52  Aligned_cols=92  Identities=10%  Similarity=0.124  Sum_probs=49.5

Q ss_pred             CCcEEEEEEC---------CCcEEEEeCCCCceEEEee--CCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCC
Q 011978          371 DGQWVASASF---------DKSIKLWNGTTGKFVAVFR--GHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQ  434 (473)
Q Consensus       371 ~g~~lasgs~---------d~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~  434 (473)
                      ++++++.|+.         -..+.+||..+.+....-.  .....-..+.  -++++++.|+.+     ..+.+||+.+.
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            6677777763         3458899998875433311  1111112222  266777776653     35889998875


Q ss_pred             ce--eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          435 KL--KQDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       435 ~~--~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      +-  +..++........+.+  +++.++.||.++
T Consensus       227 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  258 (306)
T 3ii7_A          227 EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQG  258 (306)
T ss_dssp             EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCS
T ss_pred             cEEECCCCCCCccceeEEEE--CCEEEEEeCcCC
Confidence            32  2233322222222323  677888888653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.45  E-value=3.8  Score=36.07  Aligned_cols=103  Identities=10%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             eEEEEeC--CCeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEecC----CeEEEeeCCCCcccccc-CCCc
Q 011978          122 QLASGSG--DTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDPQTGKPSGNP-LSGH  192 (473)
Q Consensus       122 ~lat~s~--d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~d----g~i~iwd~~~~~~~~~~-~~~~  192 (473)
                      .++.|+.  ...+.+||..+.+=  +.........-.++.+  ++..++.|+.+    ..+.+||+.+.+..... +...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            3455543  35788899876541  1111111111222222  56677777755    67888998876532111 1111


Q ss_pred             CCcEEEEEeceeccCCCCceEEEeeCC------CcEEEEECCCCeEE
Q 011978          193 KKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRKCV  233 (473)
Q Consensus       193 ~~~v~~i~~~~~~~~~~~~~~~s~s~d------g~i~iwd~~~~~~~  233 (473)
                      ......+..       ++..++.|+.+      ..+.+||..+.+-.
T Consensus        92 r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           92 RDSLAACAA-------EGKIYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             CBSCEEEEE-------TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             ccceeEEEE-------CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            111111111       23456666654      46888898876543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.45  E-value=3.9  Score=36.21  Aligned_cols=92  Identities=12%  Similarity=0.121  Sum_probs=49.6

Q ss_pred             CCCcEEEEEEC-C-----CcEEEEeCCCCceEEEe--eCCccCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCce
Q 011978          370 PDGQWVASASF-D-----KSIKLWNGTTGKFVAVF--RGHVGPVYQISWSADSRLLLSGSKDS-----TLKVWDIRTQKL  436 (473)
Q Consensus       370 p~g~~lasgs~-d-----~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~Dg-----~i~iwd~~~~~~  436 (473)
                      .++++++.|+. +     ..+.+||..+.+....-  ......-..+.  -++++++.|+.++     .+.+||+.+.+-
T Consensus       147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKW  224 (315)
T ss_dssp             ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred             ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeE
Confidence            46777788876 2     46889998876543321  11111112222  2677777777654     488899877532


Q ss_pred             --eecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978          437 --KQDLPGHADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       437 --~~~~~~h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                        +..++.....-..+.  -+++.++.||.+
T Consensus       225 ~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~  253 (315)
T 4asc_A          225 APFEAFPQERSSLSLVS--LVGTLYAIGGFA  253 (315)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEEEEEE
T ss_pred             EECCCCCCcccceeEEE--ECCEEEEECCcc
Confidence              222222111112222  356777877764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=93.39  E-value=6.7  Score=38.79  Aligned_cols=121  Identities=7%  Similarity=-0.049  Sum_probs=66.5

Q ss_pred             EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCC--cEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIS  409 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~--~v~lwd~~~~~~~~~~~~h~~~v~~v~  409 (473)
                      ++.+..+.|.+.+.... .............+.|+++| .|.++.+-....  .|...++................+.++
T Consensus       405 ~td~~~~~I~v~~~~G~-~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla  483 (628)
T 4a0p_A          405 WTCEATNVINVTRLDGR-SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALA  483 (628)
T ss_dssp             EEETTTTEEEEEETTSC-EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEcCCCCEEEEEECCCC-eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEE
Confidence            34444555555554321 11111222345688999999 565555543333  466666653333333333445679999


Q ss_pred             EecCCCEEEEEeC-CCcEEEEECCCCceeecccccCCCEEEEEEee
Q 011978          410 WSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       410 ~sp~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~  454 (473)
                      +.+++..|+.+.. .+.|...|+..........+......+++...
T Consensus       484 ~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~  529 (628)
T 4a0p_A          484 LDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFE  529 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred             EeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEEC
Confidence            9998777776654 57899999865432222212233456666543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.39  E-value=7.4  Score=36.68  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=21.9

Q ss_pred             cEEEEEecCCCeEEEeecCC-eEEEEECCCC
Q 011978          242 AVTCVKWGGDGVIYTGSQDC-TIKVWETTQG  271 (473)
Q Consensus       242 ~v~~~~~~~~~~l~s~~~d~-~i~~wd~~~~  271 (473)
                      ..+.++|.++|.++.+...+ .|++++..++
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence            45688999999887777775 6777765443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.36  E-value=5.5  Score=35.09  Aligned_cols=92  Identities=13%  Similarity=0.175  Sum_probs=50.3

Q ss_pred             CCcEEEEEECC-----CcEEEEeCCCCceEEE--eeCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcee-
Q 011978          371 DGQWVASASFD-----KSIKLWNGTTGKFVAV--FRGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQKLK-  437 (473)
Q Consensus       371 ~g~~lasgs~d-----~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~~~-  437 (473)
                      ++++++.|+.+     ..+.+||..+.+....  +.........+.+  ++++++.|+.+     ..+.+||+.+.+-. 
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence            67777887764     4588999887654322  1111111122222  67777777654     46899999875432 


Q ss_pred             -ecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          438 -QDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       438 -~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                       ..++.....-..+.  -+++.++.||.++
T Consensus       246 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~  273 (308)
T 1zgk_A          246 VAPMKHRRSALGITV--HQGRIYVLGGYDG  273 (308)
T ss_dssp             CCCCSSCCBSCEEEE--ETTEEEEECCBCS
T ss_pred             CCCCCCCccceEEEE--ECCEEEEEcCcCC
Confidence             22222111112222  2677778887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.28  E-value=0.56  Score=42.76  Aligned_cols=99  Identities=15%  Similarity=0.212  Sum_probs=57.6

Q ss_pred             ceeEEEECCCCc-EEEEEECCCcEEEEeCCCCceEEE-------eeCCccCEEEEEEecC---CCEEEEE-eC-------
Q 011978          362 LVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKFVAV-------FRGHVGPVYQISWSAD---SRLLLSG-SK-------  422 (473)
Q Consensus       362 ~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~~~~~~~-------~~~h~~~v~~v~~sp~---g~~l~s~-s~-------  422 (473)
                      ....|+|.|+|+ +++ +...|.|++++.. ++....       +....+....++|+|+   +..|..+ +.       
T Consensus        19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            467899999999 554 4567899999853 332111       1112346789999996   4444433 22       


Q ss_pred             CCcEEEEECCCC--c------eeeccc-----ccCCCEEEEEEeeCCCEEEEEeC
Q 011978          423 DSTLKVWDIRTQ--K------LKQDLP-----GHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       423 Dg~i~iwd~~~~--~------~~~~~~-----~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      ...|..|+....  +      ....++     .|.  -..+.|.|||.++++.+.
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECC
Confidence            234666665432  1      111222     132  357999999976666543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.22  E-value=6.5  Score=35.60  Aligned_cols=60  Identities=13%  Similarity=0.089  Sum_probs=40.0

Q ss_pred             cceeEEEECC-------CCcEEEEEECCCcEEEEeCCCCceEEE---eeCCccCEEEEEEecCCCEEEEE
Q 011978          361 QLVNHVYFSP-------DGQWVASASFDKSIKLWNGTTGKFVAV---FRGHVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       361 ~~v~~v~~sp-------~g~~lasgs~d~~v~lwd~~~~~~~~~---~~~h~~~v~~v~~sp~g~~l~s~  420 (473)
                      ..+..++|..       +|.++++.-..+.|...++..++....   +......+..+++.|||.++++.
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            3566777753       577777766777888877776544322   22233578999999999866543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.79  E-value=8.2  Score=34.03  Aligned_cols=55  Identities=7%  Similarity=-0.020  Sum_probs=30.6

Q ss_pred             CeEEEEeCCCCcee-EEEcCCCCCEEEEEECCCCCeEEEEec----C-------CeEEEeeCCCCcc
Q 011978          130 TTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSK----A-------GELQCWDPQTGKP  184 (473)
Q Consensus       130 ~~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~s~~~----d-------g~i~iwd~~~~~~  184 (473)
                      ..+.+||..+++=. .................+++.++.|+.    +       ..+..||+.+.+.
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   79 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW   79 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence            57888998876521 122222122233333457777788874    1       1277888877653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=90.69  E-value=8.4  Score=34.01  Aligned_cols=93  Identities=15%  Similarity=0.262  Sum_probs=49.3

Q ss_pred             CCCcEEEEEECC------CcEEEEeCCCCceEEEe--eCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce
Q 011978          370 PDGQWVASASFD------KSIKLWNGTTGKFVAVF--RGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQKL  436 (473)
Q Consensus       370 p~g~~lasgs~d------~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~~  436 (473)
                      .++++++.|+.+      ..+.+||..+.+....-  .........+.  -++++++.|+.+     ..+.+||+.+.+-
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence            467777777642      35899999887643321  11111112222  266777777643     2477899876542


Q ss_pred             --eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          437 --KQDLPGHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       437 --~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                        +..++.....-..+  .-+++.++.||.+.
T Consensus       235 ~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~  264 (318)
T 2woz_A          235 EVMTEFPQERSSISLV--SLAGSLYAIGGFAM  264 (318)
T ss_dssp             EECCCCSSCCBSCEEE--EETTEEEEECCBCC
T ss_pred             EECCCCCCcccceEEE--EECCEEEEECCeec
Confidence              22333222111222  23567778877653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.68  E-value=9.2  Score=34.44  Aligned_cols=53  Identities=25%  Similarity=0.243  Sum_probs=37.3

Q ss_pred             ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce--eEEE----cCCCCCEEEEEECCC
Q 011978          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKC----TGHKNWVLCIAWSAD  161 (473)
Q Consensus       109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~--~~~~----~~~~~~v~~l~~s~d  161 (473)
                      ..-+.++|.|||+.+++--..|.|++++..++..  +..+    .........|+|+||
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence            3567899999999777765589999998665443  2112    123456889999996

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.92  E-value=18  Score=36.61  Aligned_cols=306  Identities=11%  Similarity=0.021  Sum_probs=155.0

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~  189 (473)
                      .|.++...+++..|-.|.. +-+..+|..+++......-....|.++...++|... .|+. +-+.+++..+++......
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~  268 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIH  268 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECC
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEc
Confidence            4888888877764433443 457788877654221111112458888888777654 4454 457888876654211100


Q ss_pred             ------CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-----CccccEEEEEecCCCeEEEee
Q 011978          190 ------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-----GHTLAVTCVKWGGDGVIYTGS  258 (473)
Q Consensus       190 ------~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~l~s~~  258 (473)
                            .-....|.++....     . ..+=.|+..| +.+.............     .....|.++.-+.+|.|..|+
T Consensus       269 ~~~~~~~l~~~~i~~i~~D~-----~-g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt  341 (758)
T 3ott_A          269 DSRNIQSLTNNIIWNIFADQ-----E-HNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG  341 (758)
T ss_dssp             CTTCTTSCSCSCEEEEEECT-----T-CCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE
T ss_pred             CCCCcCcCCcCeEEEEEEcC-----C-CCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee
Confidence                  01123355553221     1 2233444445 4433322111111110     112458888888888888887


Q ss_pred             cCCeEEEEECCCCce--eeeeec-------cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          259 QDCTIKVWETTQGKL--IRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~--~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                      .+ -+..++..+++.  ...+..       ....|.++...                                     ..
T Consensus       342 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d-------------------------------------~~  383 (758)
T 3ott_A          342 AN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYED-------------------------------------KE  383 (758)
T ss_dssp             TT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEEC-------------------------------------TT
T ss_pred             CC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEEC-------------------------------------CC
Confidence            55 466666554321  111110       01122332211                                     12


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecC-----cccceeEEEECCCCcEEEEEECCCcEEEEeCCC-----CceE---E
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTG-----HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-----GKFV---A  396 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~-----~~~~---~  396 (473)
                      ..+..|+. +-+..++.............     ....|.++...++|++.+ |+..+-+..+|..+     +...   .
T Consensus       384 g~lWigt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~  461 (758)
T 3ott_A          384 QQLWIATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQ  461 (758)
T ss_dssp             SCEEEEET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSE
T ss_pred             CCEEEEeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceeccc
Confidence            23555553 46777776433211111101     224578888888877544 56555688888542     1111   1


Q ss_pred             EeeC----CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc-c--cCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          397 VFRG----HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-G--HADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       397 ~~~~----h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~--h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      .+..    ....|.++...++|++-+.++..+-+..+|..+++...... +  ....+.++....+|+.-+. +.+|
T Consensus       462 ~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G  537 (758)
T 3ott_A          462 NYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG  537 (758)
T ss_dssp             EECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE
T ss_pred             ccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc
Confidence            2211    12358899988889877644444558889988765433211 1  1245777777777765543 3445

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.36  E-value=2  Score=41.22  Aligned_cols=100  Identities=15%  Similarity=0.105  Sum_probs=65.2

Q ss_pred             ceeEEEECCCCcEEEEEE-CCCcEEEEeCCCC------ce-------EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEE
Q 011978          362 LVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG------KF-------VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK  427 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~------~~-------~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~  427 (473)
                      ....+.++|||++++.++ .+.++.++|.+..      +.       ....+.- -.....+|.++|+-..|.--|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEeeeeecceEE
Confidence            445688999999988776 4779999998741      11       2222222 2456789999996555666899999


Q ss_pred             EEECCCC----------ceeecccccCCCEEEEEE------eeCCCEEEEEe
Q 011978          428 VWDIRTQ----------KLKQDLPGHADEVFAVDW------SPDGEKVASGG  463 (473)
Q Consensus       428 iwd~~~~----------~~~~~~~~h~~~i~~l~~------s~d~~~l~s~~  463 (473)
                      -|++...          ..+..+.-|-. +-.+.-      .|||++|++..
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence            9998642          23334433322 222222      58899999874

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.07  E-value=7.2  Score=36.82  Aligned_cols=105  Identities=10%  Similarity=0.091  Sum_probs=59.6

Q ss_pred             ceeEEEECCCCc-EEEEEECCCcEEEEeCCCC---ceEEEee---------CCccCEEEEEEecC----CCEEEEEeC--
Q 011978          362 LVNHVYFSPDGQ-WVASASFDKSIKLWNGTTG---KFVAVFR---------GHVGPVYQISWSAD----SRLLLSGSK--  422 (473)
Q Consensus       362 ~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~~---~~~~~~~---------~h~~~v~~v~~sp~----g~~l~s~s~--  422 (473)
                      ..+.|+|.|||. .|..+...|.|++++....   ..+..+.         ...+....|+|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            457899999996 3444567899999975422   1122111         11456889999996    444443332  


Q ss_pred             C----------CcEEEEECCC----------Cceeeccc--ccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978          423 D----------STLKVWDIRT----------QKLKQDLP--GHADEVFAVDWSPDGEKVASGGKDR  466 (473)
Q Consensus       423 D----------g~i~iwd~~~----------~~~~~~~~--~h~~~i~~l~~s~d~~~l~s~~~D~  466 (473)
                      +          ..|.-|.+..          .+.+..+.  .....-..|.|.|||++.++.+..+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1          1344455532          11222221  1112357899999998877776543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=88.05  E-value=13  Score=32.57  Aligned_cols=63  Identities=16%  Similarity=0.258  Sum_probs=36.8

Q ss_pred             CCcEEEEEECC-----CcEEEEeCCCCceEEEe--eCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCc
Q 011978          371 DGQWVASASFD-----KSIKLWNGTTGKFVAVF--RGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQK  435 (473)
Q Consensus       371 ~g~~lasgs~d-----~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~  435 (473)
                      ++++++.|+.+     ..+.+||+.+.+....-  .........+.  -++++++.|+.+     ..+.+||+.+.+
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            67788888764     46899999877543321  11111112222  266777777654     347788887643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=87.88  E-value=34  Score=37.21  Aligned_cols=257  Identities=11%  Similarity=0.107  Sum_probs=123.9

Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccC
Q 011978          128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (473)
Q Consensus       128 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  207 (473)
                      +..+|.|-|+..+.......   -..-+.-.+|..+.|+-- ...+++++|+++........  ....|.-..|...   
T Consensus        46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~--~~e~VvfWkWis~---  116 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL---  116 (1630)
T ss_pred             CCceEEEEECCCCCCccccc---ccchhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccc--cCCCceEEEecCC---
Confidence            34478888887654332111   111123346666555443 36789999998765433211  1234666666432   


Q ss_pred             CCCceEEEeeCCCcEEEEECCCC-eEEEEecCc----cccEEEEEecCCC--eEEEee------cCCeEEEEECCCCcee
Q 011978          208 APCRRFVSASKDGDARIWDVSLR-KCVICLSGH----TLAVTCVKWGGDG--VIYTGS------QDCTIKVWETTQGKLI  274 (473)
Q Consensus       208 ~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h----~~~v~~~~~~~~~--~l~s~~------~d~~i~~wd~~~~~~~  274 (473)
                         ..++.. .+..|..|++... .....+..|    ...|..-..+++.  .+++|-      -.|.+.+|..+.+. .
T Consensus       117 ---~~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-s  191 (1630)
T 1xi4_A          117 ---NTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-S  191 (1630)
T ss_pred             ---CeeEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-c
Confidence               223322 3467999998642 222222222    2334444445554  233332      34666777665432 1


Q ss_pred             eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE----ecCCceEEEEeCCCC-
Q 011978          275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS----GSDDFTMFLWEPAVS-  349 (473)
Q Consensus       275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~d~~i~iwd~~~~-  349 (473)
                      +.+.+|...-..+.+..                                  ...+..+++    ....+.+++-++... 
T Consensus       192 Q~iegha~~F~~~~~~~----------------------------------~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~  237 (1630)
T 1xi4_A          192 QPIEGHAASFAQFKMEG----------------------------------NAEESTLFCFAVRGQAGGKLHIIEVGTPP  237 (1630)
T ss_pred             hhhhHhHhhhheeccCC----------------------------------CCCCceEEEEEEecCCCceEEEEecCCCc
Confidence            22333321111100000                                  000111211    112356777765332 


Q ss_pred             --CCCe-e----eec---CcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEE
Q 011978          350 --KQPK-T----RMT---GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS  419 (473)
Q Consensus       350 --~~~~-~----~~~---~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s  419 (473)
                        ..+. +    ...   ...+-..++..|+....+..-+.-|.+.++|+.+|.++..-+-...+|...+-+....-++.
T Consensus       238 ~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~  317 (1630)
T 1xi4_A          238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIG  317 (1630)
T ss_pred             cCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEE
Confidence              1110 0    000   01223456777877778888888999999999999887655444445544443333223333


Q ss_pred             EeCCCcEEEEECC
Q 011978          420 GSKDSTLKVWDIR  432 (473)
Q Consensus       420 ~s~Dg~i~iwd~~  432 (473)
                      ....|.|.--.+.
T Consensus       318 vnr~G~vl~v~v~  330 (1630)
T 1xi4_A          318 VNRKGQVLSVCVE  330 (1630)
T ss_pred             EcCCceEEEEEEc
Confidence            3355555444443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=87.68  E-value=15  Score=32.92  Aligned_cols=54  Identities=15%  Similarity=0.142  Sum_probs=26.9

Q ss_pred             cEEEEeCCCCceE--EEeeCCccCEEEEEEecCCCEEEEEeCCC------cEEEEECCCCceee
Q 011978          383 SIKLWNGTTGKFV--AVFRGHVGPVYQISWSADSRLLLSGSKDS------TLKVWDIRTQKLKQ  438 (473)
Q Consensus       383 ~v~lwd~~~~~~~--~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg------~i~iwd~~~~~~~~  438 (473)
                      .+.+||+.+.+..  ..+......-.  +...++++++.|+.++      .|.++++++++...
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence            4678888765433  22222222112  2234677777787543      35566887766544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.51  E-value=28  Score=34.82  Aligned_cols=71  Identities=13%  Similarity=0.125  Sum_probs=40.5

Q ss_pred             EEEECCC-CcEEEEEEC--C-----CcEEEEeCCCCc------eEEEee---CCccCEEEEEEecCCCEEEEEeC-----
Q 011978          365 HVYFSPD-GQWVASASF--D-----KSIKLWNGTTGK------FVAVFR---GHVGPVYQISWSADSRLLLSGSK-----  422 (473)
Q Consensus       365 ~v~~sp~-g~~lasgs~--d-----~~v~lwd~~~~~------~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~-----  422 (473)
                      ++.+..+ +++++.|+.  +     ..+..||+.+.+      ....-.   ........+ ...++++++.|+.     
T Consensus       543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGL  621 (695)
T ss_dssp             EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCC
T ss_pred             EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCC
Confidence            3555555 777888876  2     358899988776      222211   011111222 2333677777764     


Q ss_pred             ---CCcEEEEECCCCce
Q 011978          423 ---DSTLKVWDIRTQKL  436 (473)
Q Consensus       423 ---Dg~i~iwd~~~~~~  436 (473)
                         ...+.+||+.+.+-
T Consensus       622 ~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          622 FDRTNSIISLDPLSETL  638 (695)
T ss_dssp             CCTTTSEEEEETTTTEE
T ss_pred             CCCCCeEEEEECCCCeE
Confidence               34589999987543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=84.90  E-value=49  Score=36.09  Aligned_cols=220  Identities=12%  Similarity=0.108  Sum_probs=108.9

Q ss_pred             EEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCC-ceeeeeecc----CceEEEE
Q 011978          213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGH----GHWVNSL  287 (473)
Q Consensus       213 ~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~----~~~v~~~  287 (473)
                      +++--...++.|+|+.+...+..+.- ...|.--.|-.+..|.-. .+..|..|++... ...+.+..|    +..|...
T Consensus        79 iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY  156 (1630)
T 1xi4_A           79 VIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY  156 (1630)
T ss_pred             eEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEe
Confidence            44444578999999988766554332 235666677666543222 3468999998632 233323222    2223333


Q ss_pred             Eecccceee--eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeE
Q 011978          288 ALSTEYALR--TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (473)
Q Consensus       288 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  365 (473)
                      ..+++..+.  .|....                               .+.-.|.+.+|....  .....+.||......
T Consensus       157 ~~d~~~kW~~l~gi~~~-------------------------------~~~v~G~mQLyS~er--~~sQ~iegha~~F~~  203 (1630)
T 1xi4_A          157 RTDAKQKWLLLTGISAQ-------------------------------QNRVVGAMQLYSVDR--KVSQPIEGHAASFAQ  203 (1630)
T ss_pred             eeCCCCCeEEEEeeccC-------------------------------CCcccceeeeeeccc--ccchhhhHhHhhhhe
Confidence            333322111  110000                               012346677776432  222334455444433


Q ss_pred             EEEC--C-CCcEEEEEEC---CCcEEEEeCCCC---ce------EEEee---CCccCEEEEEEecCCCEEEEEeCCCcEE
Q 011978          366 VYFS--P-DGQWVASASF---DKSIKLWNGTTG---KF------VAVFR---GHVGPVYQISWSADSRLLLSGSKDSTLK  427 (473)
Q Consensus       366 v~~s--p-~g~~lasgs~---d~~v~lwd~~~~---~~------~~~~~---~h~~~v~~v~~sp~g~~l~s~s~Dg~i~  427 (473)
                      +.+.  + ...+++.+..   .+.++|-++...   ..      +..+-   ...+...++..|+.-..+...+.-|.|.
T Consensus       204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~  283 (1630)
T 1xi4_A          204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH  283 (1630)
T ss_pred             eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEE
Confidence            3322  1 1223333322   257777776432   11      11111   1123345666777666777888899999


Q ss_pred             EEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCc
Q 011978          428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV  467 (473)
Q Consensus       428 iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~  467 (473)
                      +||+.++..+..-+-..+.|+..+-+....-++.....|.
T Consensus       284 ~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~  323 (1630)
T 1xi4_A          284 LYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ  323 (1630)
T ss_pred             EEecccchhhhhccccCCceEEeccCCCCCceEEEcCCce
Confidence            9999998776543333445554444433333444444443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.07  E-value=34  Score=36.57  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=31.3

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~  398 (473)
                      .+.+++..++..++.+-+.|+++|+||+.+++++.+.
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            3445667788899999999999999999999988764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.11  E-value=48  Score=34.61  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=32.6

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~  398 (473)
                      .+.+++..++..++.+-+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4667788888999999999999999999999988764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=82.93  E-value=30  Score=32.20  Aligned_cols=221  Identities=11%  Similarity=0.104  Sum_probs=128.4

Q ss_pred             EEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCC-ceeeeeeccC----ceEEEE
Q 011978          213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGHG----HWVNSL  287 (473)
Q Consensus       213 ~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~----~~v~~~  287 (473)
                      ++.--...++.|+|+++...+..+.-. ..|..-.|-.+..|.- =.+..|+-|++... ...+-+..|.    ..|...
T Consensus        79 iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l~l-VT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY  156 (494)
T 1bpo_A           79 VIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVAL-VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY  156 (494)
T ss_dssp             CEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEEEE-ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEE
T ss_pred             EEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecCCCeEEE-EcCCeeEEecccCCCCchhheecchhcccceEEEE
Confidence            333334789999999998877765432 3466666765554332 23568999998642 3444444332    233333


Q ss_pred             Eecccceee--eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeE
Q 011978          288 ALSTEYALR--TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (473)
Q Consensus       288 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  365 (473)
                      ..+++..+.  .|....                          .     +.-.|.+.+|...  +.....+.||......
T Consensus       157 ~~d~~~kW~~l~GI~~~--------------------------~-----~~v~G~mQLYS~e--r~~sQ~ieGhaa~F~~  203 (494)
T 1bpo_A          157 RTDAKQKWLLLTGISAQ--------------------------Q-----NRVVGAMQLYSVD--RKVSQPIEGHAASFAQ  203 (494)
T ss_dssp             EECTTSSEEEEEEEEEE--------------------------T-----TEEEEEEEEEEST--TCCEEEECCSEEEEEE
T ss_pred             EECCCCCeEEEEeeccc--------------------------C-----CcccceEEEeecc--ccccchheeeeeeeEE
Confidence            333332211  110000                          0     0124677888753  3445567777766655


Q ss_pred             EEECCC---CcEEEEEECC---CcEEEEeCCCC---c------eEEEee---CCccCEEEEEEecCCCEEEEEeCCCcEE
Q 011978          366 VYFSPD---GQWVASASFD---KSIKLWNGTTG---K------FVAVFR---GHVGPVYQISWSADSRLLLSGSKDSTLK  427 (473)
Q Consensus       366 v~~sp~---g~~lasgs~d---~~v~lwd~~~~---~------~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~Dg~i~  427 (473)
                      +.+..+   .++++.+...   +.+++-++...   .      .+..+-   ...+.-.++..|+.-..+..-..-|.|+
T Consensus       204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~  283 (494)
T 1bpo_A          204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH  283 (494)
T ss_dssp             EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEE
Confidence            444322   1355555543   67888887432   1      111111   1234566788888777888889999999


Q ss_pred             EEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978          428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL  468 (473)
Q Consensus       428 iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i  468 (473)
                      +||+.++..+..-+-..+.|...+-.....-++.....|.+
T Consensus       284 lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV  324 (494)
T 1bpo_A          284 LYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (494)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred             EEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence            99999998876554455677766666665666666666655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	473
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-53
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-45
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-23
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-47
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-39
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-40
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-27
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-37
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-37
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-35
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-25
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-23
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-35
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-22
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-33
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-26
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-33
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-32
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-22
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-32
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-30
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-27
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-28
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-21
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-17
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-15
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-28
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-24
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-23
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-26
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-18
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-25
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-18
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-24
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-21
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-23
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-23
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-18
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-22
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-22
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-22
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-15
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-10
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-19
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-17
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-13
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	7e-11
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-09
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	6e-05
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	3e-06
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	4e-05
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	7e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  179 bits (455), Expect = 2e-53
 Identities = 78/336 (23%), Positives = 134/336 (39%), Gaps = 24/336 (7%)

Query: 96  PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
           P       ++GH   V  V F P    + S S D T+++WD  T        GH + V  
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           I++   GK L S                                +   V +       VS
Sbjct: 65  ISFDHSGKLLASC------SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI 274
           AS+D   ++W+V    CV   +GH   V  V+   DG +I + S D T++VW     +  
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
            EL+ H H V  ++ + E +  + +     +   S                G     L+S
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKS----------------GKPGPFLLS 222

Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
           GS D T+ +W+ + +      + GH   V  V F   G+++ S + DK++++W+    + 
Sbjct: 223 GSRDKTIKMWDVS-TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

Query: 395 VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
           +     H   V  + +   +  +++GS D T+KVW+
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  159 bits (402), Expect = 1e-45
 Identities = 78/341 (22%), Positives = 141/341 (41%), Gaps = 27/341 (7%)

Query: 133 RLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH 192
           + W        +  +GH++ V  + +      +VS S+   ++ WD +TG      L GH
Sbjct: 1   KEWIPRPP-EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-LKGH 58

Query: 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG 252
              +  IS++                D   ++WD    +C+  + GH   V+ V    +G
Sbjct: 59  TDSVQDISFDHSGKLLASCSA-----DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113

Query: 253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE-YALRTGAFDHTGKQYSSP 310
             I + S+D TIK+WE   G  ++   GH  WV  +  + +   + + + D T + +   
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173

Query: 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370
            +  KA L  +                      W P  S    +  TG            
Sbjct: 174 TKECKAELREH--------------RHVVECISWAPESSYSSISEATGS----ETKKSGK 215

Query: 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
            G ++ S S DK+IK+W+ +TG  +    GH   V  + + +  + +LS + D TL+VWD
Sbjct: 216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 275

Query: 431 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
            + ++  + L  H   V ++D+      V +G  D+ +K+W
Sbjct: 276 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.3 bits (238), Expect = 8e-23
 Identities = 62/239 (25%), Positives = 90/239 (37%), Gaps = 38/239 (15%)

Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           LSGH   VT V +     V+ + S+D TIKVW+   G   R LKGH   V          
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD-------- 64

Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
                                        I  +   +L++                +   
Sbjct: 65  -----------------------------ISFDHSGKLLASCSADMTIKLWDFQGFECIR 95

Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS 414
            M GH   V+ V   P+G  + SAS DK+IK+W   TG  V  F GH   V  +  + D 
Sbjct: 96  TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 155

Query: 415 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
            L+ S S D T++VW + T++ K +L  H   V  + W+P+    +            G
Sbjct: 156 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.0 bits (219), Expect = 3e-20
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           I      S +         +      G  L SGS D T+++WD++T   +    GH NWV
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             + + + GK ++S +    L+ WD +  +     L+ H+ ++T + +            
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT-LNAHEHFVTSLDFHKT-----APYV 304

Query: 214 VSASKDGDARIWD 226
           V+ S D   ++W+
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.1 bits (201), Expect = 6e-18
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 44/172 (25%)

Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
            W P      K  ++GH+  V  V F P    + SAS D +IK+W+  TG F    +GH 
Sbjct: 2   EWIP--RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

Query: 403 GPVYQI------------------------------------------SWSADSRLLLSG 420
             V  I                                          S   +   ++S 
Sbjct: 60  DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 119

Query: 421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472
           S+D T+K+W+++T    +   GH + V  V  + DG  +AS   D+ +++W+
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  165 bits (417), Expect = 2e-47
 Identities = 69/366 (18%), Positives = 128/366 (34%), Gaps = 45/366 (12%)

Query: 71  LEKHKVSVEKVLSIVYQPQAVFRIRPVNR----CSATIAGHTEAVLSVAFSPDGRQLASG 126
           L+       K  +     Q    I PV R       T+ GH   + ++ +  D R L S 
Sbjct: 14  LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 73

Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186
           S D  + +WD  T   +       +WV+  A++  G ++  G        ++ +T + + 
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133

Query: 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV 246
                       +S      +           D    +WD+   +     +GHT  V  +
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSS---GDTTCALWDIETGQQTTTFTGHTGDVMSL 190

Query: 247 KWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305
               D  ++ +G+ D + K+W+  +G   +   GH   +N++            F   G 
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC-----------FFPNGN 239

Query: 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL-VN 364
                                       +GSDD T  L++    ++  T    +    + 
Sbjct: 240 -------------------------AFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS 424
            V FS  G+ + +   D +  +W+        V  GH   V  +  + D   + +GS DS
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334

Query: 425 TLKVWD 430
            LK+W+
Sbjct: 335 FLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  143 bits (360), Expect = 2e-39
 Identities = 73/327 (22%), Positives = 118/327 (36%), Gaps = 41/327 (12%)

Query: 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
            GH   +  + W  D + LVS S+ G+L  WD  T       +     W+   ++ P   
Sbjct: 52  RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-IPLRSSWVMTCAYAPSGN 110

Query: 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266
              C    +     + +  + +  +    L+GHT  ++C ++  D  I T S D T  +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
           +   G+      GH   V                                     +    
Sbjct: 170 DIETGQQTTTFTGHTGDVM------------------------------------SLSLA 193

Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
                 VSG+ D +  LW+       +   TGH+  +N + F P+G   A+ S D + +L
Sbjct: 194 PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252

Query: 387 --WNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
                            +  +  +S+S   RLLL+G  D    VWD         L GH 
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312

Query: 445 DEVFAVDWSPDGEKVASGGKDRVLKLW 471
           + V  +  + DG  VA+G  D  LK+W
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.9 bits (216), Expect = 1e-19
 Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 35/243 (14%)

Query: 231 KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL 289
           +    L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A 
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349
           +                                              +  +++  +    
Sbjct: 106 APSGNYVACGGLD----------------------------------NICSIYNLKTREG 131

Query: 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409
               +R               D   + ++S D +  LW+  TG+    F GH G V  +S
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191

Query: 410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK 469
            + D+RL +SG+ D++ K+WD+R    +Q   GH  ++ A+ + P+G   A+G  D   +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251

Query: 470 LWM 472
           L+ 
Sbjct: 252 LFD 254

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 8e-10
 Identities = 18/125 (14%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 311 EEMKKAALERYNKIK-GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS 369
           +++++ A +  N+I+         + S           +  + +  + GH   +  +++ 
Sbjct: 5   DQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG 64

Query: 370 PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVW 429
            D + + SAS D  + +W+  T   V         V   +++     +  G  D+   ++
Sbjct: 65  TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124

Query: 430 DIRTQ 434
           +++T+
Sbjct: 125 NLKTR 129

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 5e-40
 Identities = 76/344 (22%), Positives = 139/344 (40%), Gaps = 25/344 (7%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
           +    + GH + V++      G ++ SGS D T+++W   T   +    GH   V     
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

Query: 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218
             +                  +T K            + G +     ++   +R VS S+
Sbjct: 66  RDNIII----------SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115

Query: 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK 278
           D   R+WD+   +C+  L GH  AV CV++ G  V+   + D  +KVW+      +  L+
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG-AYDFMVKVWDPETETCLHTLQ 174

Query: 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA---PERLVSG 335
           GH + V SL     + + +G+ D + + +          L  +  +          LVSG
Sbjct: 175 GHTNRVYSLQFDGIHVV-SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSG 233

Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
           + D T+ +W+    +  +T    ++          +  +V ++S D ++KLW+  TG+F+
Sbjct: 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293

Query: 396 AVFR-----GHVGPVYQISWSADSRLLLSGSKDST----LKVWD 430
                    G  G V++I  S    +   GS++ T    L V D
Sbjct: 294 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (271), Expect = 5e-27
 Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 11/250 (4%)

Query: 225 WDVSLRKCVICLSGHTLAV-TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283
           W     K    L GH   V TC+++ G+  I +GS D T+KVW    GK +R L GH   
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI--KGNAPERLVSGSDDFTM 341
           V S  +     +            +   E         + +       +R+VSGS D T+
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401
            +W+    +     M     +    Y     + V S ++D  +K+W+  T   +   +GH
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDG---RRVVSGAYDFMVKVWDPETETCLHTLQGH 176

Query: 402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS 461
                  S   D   ++SGS D++++VWD+ T      L GH      ++   +   + S
Sbjct: 177 --TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVS 232

Query: 462 GGKDRVLKLW 471
           G  D  +K+W
Sbjct: 233 GNADSTVKIW 242

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 7e-10
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 16/138 (11%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV-LCI 156
             C  T+ GH      +    +   L SG+ D+TV++WD+ T   +    G         
Sbjct: 207 GNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 264

Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKP----SGNPLSGHKKWITGISWEPVHLNAPCRR 212
               +   +++ S  G ++ WD +TG+           G    +  I             
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-----TKLV 319

Query: 213 FVSASKDGDA----RIWD 226
               S++G       + D
Sbjct: 320 CAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--- 147
           ++ I+           +           +   + + S D TV+LWDL T   +       
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

Query: 148 --GHKNWVLCIAWSADGKHLVSGSKAG----ELQCWD 178
             G    V  I  S        GS+ G    +L   D
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTT----VRLWDLN 138
           G    V  +  S      A GS + T    + + D +
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score =  137 bits (344), Expect = 5e-37
 Identities = 33/346 (9%), Positives = 85/346 (24%), Gaps = 31/346 (8%)

Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHL-VSGSKA 171
            A       +   +    + + D+ + T    C    K        + D +   V  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231
           G++   D  T K + +          G S     ++   +   +             ++ 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 232 CVICL--------------SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL 277
             + +                    V  ++   DG +Y    D      +   GK    L
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI--YKMDVKTGKYTVAL 179

Query: 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337
               +W      +                +       + ++        +  +   +   
Sbjct: 180 PLR-NWNRKGYSA----------PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228

Query: 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397
            +     +    K          +L      SP          +  +  ++    K +  
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKA 287

Query: 398 FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH 443
                   Y +++      L  G   + L V++  T +  +++   
Sbjct: 288 A-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 6/66 (9%), Positives = 17/66 (25%), Gaps = 2/66 (3%)

Query: 408 ISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-GHADEVFAVDWSPDGEKV-ASGGKD 465
            +  A    ++  +  + L V D+ +  + +               +PD           
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 466 RVLKLW 471
             +   
Sbjct: 62  GDIYGI 67

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP 142
                  VAF   G +L  G     + +++ +T   
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  138 bits (346), Expect = 5e-37
 Identities = 71/360 (19%), Positives = 133/360 (36%), Gaps = 66/360 (18%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK------------------CT 147
            HT  V  V FS DG  LA+G  + T +++ ++  + + +                    
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
               ++  + +S DGK L +G++   ++ WD +  K                    +   
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV------MILQGHEQDIYSLDYF 172

Query: 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
               + VS S D   RIWD+   +C + LS      T     GDG  I  GS D  ++VW
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232

Query: 267 ETTQGKLIRELK-------GHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEEMKKAAL 318
           ++  G L+  L        GH   V S+  +    ++ +G+ D + K ++      K+  
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD- 291

Query: 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378
                                     +   S   +    GH+  V  V  + + +++ S 
Sbjct: 292 -------------------------SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326

Query: 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQI------SWSADSRLLLSGSKDSTLKVWDIR 432
           S D+ +  W+  +G  + + +GH   V  +      S   +  +  +GS D   ++W  +
Sbjct: 327 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  133 bits (334), Expect = 3e-35
 Identities = 73/407 (17%), Positives = 127/407 (31%), Gaps = 69/407 (16%)

Query: 103 TIAGHTEAVLSVAFSPDGRQ---LASGSGDTTVRLWDLNTQ----TPMFKCTGHKNWVLC 155
             A H++ +       D +          +    L++          + K   H + V C
Sbjct: 8   QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 67

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           + +S DG++L +G      Q +    G      LS                         
Sbjct: 68  VKFSNDGEYLATGCN-KTTQVYRVSDGSLVAR-LSDDSAANKDPENLNTS---------- 115

Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLI 274
                                    L +  V +  DG    TG++D  I++W+    K++
Sbjct: 116 -------------------SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 156

Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHT------GKQYSSPEEMKKAALERYNKIKGNA 328
             L+GH   + SL                       +       +          +    
Sbjct: 157 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 216

Query: 329 PERLVSGSDDFTMFLW------EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
            + + +GS D  + +W                  TGH+  V  V F+ DGQ V S S D+
Sbjct: 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276

Query: 383 SIKLWNGTTGKFVAVFRGHV------------GPVYQISWSADSRLLLSGSKDSTLKVWD 430
           S+KLWN       +  +                 V  ++ + +   +LSGSKD  +  WD
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 336

Query: 431 IRTQKLKQDLPGHADEVFAVD------WSPDGEKVASGGKDRVLKLW 471
            ++      L GH + V +V         P+    A+G  D   ++W
Sbjct: 337 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (257), Expect = 8e-25
 Identities = 65/307 (21%), Positives = 109/307 (35%), Gaps = 45/307 (14%)

Query: 96  PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
           P N  +++       + SV FSPDG+ LA+G+ D  +R+WD+  +  +    GH+  +  
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           + +   G  LVSGS    ++ WD +TG+ S          I              +   +
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCS------LTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 216 ASKDGDARIWDV-------SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267
            S D   R+WD         L       +GH  +V  V +  DG  + +GS D ++K+W 
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327
                   + K        +                  +Y                    
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-------------------- 322

Query: 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY------FSPDGQWVASASFD 381
               ++SGS D  +  W+   S  P   + GH+  V  V         P+    A+ S D
Sbjct: 323 ----ILSGSKDRGVLFWDKK-SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 382 KSIKLWN 388
              ++W 
Sbjct: 378 CKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.3 bits (243), Expect = 6e-23
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 14/156 (8%)

Query: 85  VYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----- 139
           V+  +  F +  ++  + +  GH ++V SV F+ DG+ + SGS D +V+LW+L       
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290

Query: 140 -------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH 192
                   T      GHK++VL +A + + ++++SGSK   +  WD ++G P    L GH
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM-LQGH 349

Query: 193 KKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDV 227
           +  +  ++        P    F + S D  ARIW  
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.1 bits (206), Expect = 3e-18
 Identities = 59/297 (19%), Positives = 112/297 (37%), Gaps = 32/297 (10%)

Query: 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----VICLSGHTLA 242
           N  + H K I     +    + P    +    +    +++ +L +     +     HT  
Sbjct: 7   NQRANHSKPIPPFLLDLDSQSVP--DALKKQTNDYYILYNPALPREIDVELHKSLDHTSV 64

Query: 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           V CVK+  DG       + T +V+  + G L+  L                +  +     
Sbjct: 65  VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
               +S   +                     +G++D  +       +++    + GH+Q 
Sbjct: 125 RSVCFSPDGKFL------------------ATGAEDRLIR-IWDIENRKIVMILQGHEQD 165

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK 422
           +  + + P G  + S S D+++++W+  TG+         G         D + + +GS 
Sbjct: 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225

Query: 423 DSTLKVWDIRTQKLKQDLP-------GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472
           D  ++VWD  T  L + L        GH D V++V ++ DG+ V SG  DR +KLW 
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  130 bits (327), Expect = 9e-35
 Identities = 42/352 (11%), Positives = 95/352 (26%), Gaps = 29/352 (8%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC---TGHKNWVLCIAWSAD- 161
              + +  +   P    L   S D ++ ++  + Q           +K+ +LC  +  + 
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
              +  G+  GE+   D           +           +          +    +  D
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 222 AR--IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG 279
            R     V   K +   +                +  G  +  ++ +     +       
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188

Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
                                    + Y+      + A+E ++              DD+
Sbjct: 189 ESGLKY-------QIRDVALLPKEQEGYACSSIDGRVAVEFFD-----------DQGDDY 230

Query: 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399
                      +   + T     VN + FSP  +++ +A  D  I  WN  T K +  F 
Sbjct: 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290

Query: 400 GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVD 451
                   +  +    +L   + D T K        + Q +  +A  ++ + 
Sbjct: 291 KF-NEDSVVKIACSDNILCLATSDDTFKTNA----AIDQTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.7 bits (236), Expect = 2e-22
 Identities = 32/341 (9%), Positives = 81/341 (23%), Gaps = 47/341 (13%)

Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS--GHKKWITGISWEPVH 205
             K+++  I        L+  S  G L  +       + + L    +K  +   ++    
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF---- 64

Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265
                        + D +I+  +++  ++ +              +  +           
Sbjct: 65  -----------IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD 113

Query: 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
                              +   L      R         +  +    K           
Sbjct: 114 KL--------------IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159

Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
            +     ++ S      L                 Q+ +      + +  A +S D  + 
Sbjct: 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219

Query: 386 LWNGTTG---------------KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
           +                     +          PV  I +S   + L +   D  +  W+
Sbjct: 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279

Query: 431 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           ++T+K  ++     +E   V  +     +     D   K  
Sbjct: 280 LQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 22/277 (7%), Positives = 61/277 (22%), Gaps = 36/277 (12%)

Query: 231 KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK---GHGHWVNS 286
           + V         ++ +K      ++   S D ++ V++        +L     + H +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 287 LALS-------------TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333
                             E          + +  ++ E                      
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393
              +      +   V           +          +   +     +  ++ +     +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181

Query: 394 FVAVFRGHVG----PVYQISWSADSRLLLSGSKDSTLKVWDIRT---------------Q 434
                    G             +       S D  + V                     
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241

Query: 435 KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           +L       A  V ++++SP  + + + G D ++  W
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 6/99 (6%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
           +R +         V S+ FSP  + L +   D  +  W+L T+  +       N    + 
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVK 299

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
            +     L   +     +             +  +   I
Sbjct: 300 IACSDNILCLATSDDTFKTN-----AAIDQTIELNASSI 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (318), Expect = 1e-33
 Identities = 55/331 (16%), Positives = 99/331 (29%), Gaps = 49/331 (14%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSA 160
            H E V +V  S   R + +G     V++WD++            C    N++       
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
           DG  L+ G +A  L  WD     P                +           F   S   
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKA---ELTSSAPACYALAISPDSKVCFSCCSDGN 164

Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH 280
            A     +             A           ++TG  D T++ W+  +G+ +++    
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDF 223

Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340
              + SL            +  TG+  +   E                            
Sbjct: 224 TSQIFSLG-----------YCPTGEWLAVGMES--------------------------- 245

Query: 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400
             +    V+K  K ++  H+  V  + F+  G+W  S   D  +  W    G  +     
Sbjct: 246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-K 304

Query: 401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431
               V     S D + +++GS D    V+++
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 3e-26
 Identities = 45/369 (12%), Positives = 96/369 (26%), Gaps = 47/369 (12%)

Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV 166
            ++   S   + DG+          +    +           H   V  +  S   +H+ 
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVY 67

Query: 167 SGSKAGELQCWDPQTGKP----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
           +G K G ++ WD          S         +I      P          +   +    
Sbjct: 68  TGGK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-----DGCTLIVGGEASTL 121

Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
            IWD++     I     + A  C               C+              ++    
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181

Query: 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342
             +                                         N   +L +G  D T+ 
Sbjct: 182 HTD---------------------------------GASCIDISNDGTKLWTGGLDNTVR 208

Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
            W+    +  + +       +  + + P G+W+A      +++               H 
Sbjct: 209 SWDL--REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE-VLHVNKPDKYQLHLHE 265

Query: 403 GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462
             V  + ++   +  +S  KD+ L  W              +  V + D S D + + +G
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTG 324

Query: 463 GKDRVLKLW 471
             D+   ++
Sbjct: 325 SGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (186), Expect = 7e-16
 Identities = 42/289 (14%), Positives = 72/289 (24%), Gaps = 43/289 (14%)

Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
                      + S    PDG  L  G   +T+ +WDL   TP  K     +   C A +
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148

Query: 160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
                 V  S                 N     +          + ++    +  +   D
Sbjct: 149 ISPDSKVCFSC----CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204

Query: 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG 279
              R WD+   + +      T  +  + +   G       + +             +L  
Sbjct: 205 NTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL 263

Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
           H   V SL            F + GK                           VS   D 
Sbjct: 264 HESCVLSL-----------KFAYCGK-------------------------WFVSTGKDN 287

Query: 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            +  W            +     V     S D +++ + S DK   ++ 
Sbjct: 288 LLNAWR--TPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 366 VYFSPDGQWVA-SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS 424
            + + DGQ        D  I        + +     H   V  ++ S  +R + +G    
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KG 72

Query: 425 TLKVWDIRTQKLKQ-----DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472
            +KVWDI     K      D     + + +    PDG  +  GG+   L +W 
Sbjct: 73  CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 397 VFRGHVG--PVYQISWSADSRLL-LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS 453
            F+G +G  P Y    +AD ++  +    D+ +     R  +    L  H + V AV  S
Sbjct: 2   YFQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTIS 60

Query: 454 PDGEKVASGGKDRVLKLW 471
                V +GGK  V K+W
Sbjct: 61  NPTRHVYTGGKGCV-KVW 77

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  127 bits (319), Expect = 2e-33
 Identities = 53/355 (14%), Positives = 123/355 (34%), Gaps = 33/355 (9%)

Query: 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
            T+ GH  +V++     +   + +G+ D  +R++D   +  + + +GH   V  + ++  
Sbjct: 6   TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
           G  LVSGS    ++ WD + G  +       +   + +    +      +  V+ S+D  
Sbjct: 65  G-ILVSGSTDRTVRVWDIKKGCCTHV----FEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119

Query: 222 ARIWDVSLRKCVICLSG-----------------------HTLAVTCVKWGGDGVIYTGS 258
             +W +     V                            H  +V  V   G+ ++ +GS
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN-IVVSGS 178

Query: 259 QDCTIKVWETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317
            D T+ VW+  Q K +  L GH     +++         + + D T + +          
Sbjct: 179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 238

Query: 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377
           L+ +  + G                      +     + + H   ++ +        +  
Sbjct: 239 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298

Query: 378 ASFDKSIKLWNGTTGKFV-AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431
           +  +    ++N  +GK V A        ++ +++     L+ +  KD    +  +
Sbjct: 299 SGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 7e-11
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 396 AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 455
              RGH+  V       +   +++G+ D  ++V+D   +K    L GH   V+A+ ++  
Sbjct: 6   TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64

Query: 456 GEKVASGGKDRVLKLWM 472
           G  V+      V    +
Sbjct: 65  GILVSGSTDRTVRVWDI 81

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 3e-08
 Identities = 10/102 (9%), Positives = 31/102 (30%), Gaps = 6/102 (5%)

Query: 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187
                 +   +      K + H   +  I       +++      +   ++ ++GK    
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318

Query: 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
            +      I  ++++   L        +  KDG + +  +  
Sbjct: 319 NILKDADQIWSVNFKGKTL------VAAVEKDGQSFLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN 138
           ++ +R      A I    + + SV F      +A+   D    L  L+
Sbjct: 307 IYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  124 bits (312), Expect = 2e-32
 Identities = 42/372 (11%), Positives = 92/372 (24%), Gaps = 28/372 (7%)

Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKH 164
             E +   A++ D  Q+A    +  V +++ +    +       H   V  + W+ D   
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 165 LVSGSKAGELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
           +V+         W  +        +     +    + W P                    
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283
             +       I     +  ++        ++  GS D   +++     ++          
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343
                                       E   +    +         R+   S D T+ L
Sbjct: 186 ------------------SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 227

Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
            +        T  +     +  V F  +   VA+   D    L+   +      F G + 
Sbjct: 228 ADADKKMAVATLASETLP-LLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLD 285

Query: 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE----KV 459
              Q S    +      + D                   H + V  +     G+    + 
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 344

Query: 460 ASGGKDRVLKLW 471
            + G D  + +W
Sbjct: 345 CTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.7 bits (236), Expect = 3e-22
 Identities = 47/350 (13%), Positives = 93/350 (26%), Gaps = 42/350 (12%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCI 156
                +  H   V  V ++PD  ++ +   D    +W L  +   P            C+
Sbjct: 42  VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV 101

Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
            W+ + K    GS +  +     +            K   + +     H         + 
Sbjct: 102 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH--PNSVLLAAG 159

Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE 276
           S D   RI+   +++                              T    +   G+L+ E
Sbjct: 160 SCDFKCRIFSAYIKEVEER-----------------------PAPTPWGSKMPFGELMFE 196

Query: 277 LKGHGHWVNSLALSTEYALRTGAFDH------TGKQYSSPEEMKKAALERYNKIKGNAPE 330
                 WV+ +  S   +                 +  +   +    L            
Sbjct: 197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS 256

Query: 331 RLVSGSDDFTM-FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
            + +G D F + F ++   S   K    G   +                + DK      G
Sbjct: 257 LVAAGHDCFPVLFTYD---SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE-G 312

Query: 390 TTGKFVAVFRGHVGPVYQISWSADS----RLLLSGSKDSTLKVWDIRTQK 435
           +      +   H   V QIS  +          +   D  + +WD+R+ +
Sbjct: 313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.4 bits (186), Expect = 1e-15
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 396 AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWS 453
           A     V P+   +W+ D   +     +  + +++    K  Q  +L  H  +V  VDW+
Sbjct: 1   AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 454 PDGEKVASGGKDRVLKLWM 472
           PD  ++ + G DR   +W 
Sbjct: 61  PDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.3 bits (183), Expect = 2e-15
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 359 HQQLVNHVY---FSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQISWSAD 413
           H  LV  +    ++ D   +A    +  + ++  +  K+  V   + H G V  + W+ D
Sbjct: 3   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 414 SRLLLSGSKDSTLKVWDIRTQKLKQ 438
           S  +++   D    VW ++ +  K 
Sbjct: 63  SNRIVTCGTDRNAYVWTLKGRTWKP 87

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 16/206 (7%)

Query: 80  KVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT 139
           K +     P       P        +     V  V FS +G ++A  S D+TV L D + 
Sbjct: 173 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 232

Query: 140 QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE-LQCWDPQTGKPSGNPLSGHKKWITG 198
           +  +         +L + +  +   + +G      L  +D   GK S     G       
Sbjct: 233 KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS---FGGRLDVPKQ 289

Query: 199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-----V 253
            S   +       R    + D  A     S        S H  +V+ +     G      
Sbjct: 290 SSQRGLT-----ARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ 343

Query: 254 IYTGSQDCTIKVWE-TTQGKLIRELK 278
             T   D  + +W+  +    +++LK
Sbjct: 344 FCTTGMDGGMSIWDVRSLESALKDLK 369

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 34/307 (11%), Positives = 69/307 (22%), Gaps = 72/307 (23%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK 150
             +      C          VLS+ + P+   LA+GS D   R++    +    +     
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210
                       +                          S    W+ G+ +         
Sbjct: 184 WGSKMPFGELMFE-------------------------SSSSCGWVHGVCFSA-----NG 213

Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270
            R    S D    + D   +  V  L+  TL +  V +  +  +     DC   ++    
Sbjct: 214 SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 273

Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
                   G        +     A                                    
Sbjct: 274 AAGKLSFGGRLDVPKQSSQRGLTARER--------------------------------- 300

Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW----VASASFDKSIKL 386
                + D        A         + H+  V+ +     G+       +   D  + +
Sbjct: 301 ---FQNLDKKASSEGSA--AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 355

Query: 387 WNGTTGK 393
           W+  + +
Sbjct: 356 WDVRSLE 362

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  124 bits (311), Expect = 4e-32
 Identities = 58/416 (13%), Positives = 118/416 (28%), Gaps = 88/416 (21%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAW- 158
            H   + SV+         S SGD  +++WD                  HK+ +  +   
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 159 ------SADGKHLVSGSKAGELQCWDPQTGKPSGNPL---------SGHKKWITGISWEP 203
                 + +   + + S +G+L  +       +   +            K     + W  
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 204 VHLNAPCRRFVSASKDGDARIWDV------------------SLRKCVICLSGHTLAVTC 245
            +      R V+    G   IW                     L+  V      +   T 
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 246 VKWGGDGVIYTGSQDCTIKVWE------TTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
           V     G+I TG  + T+++ E          +    +  + + + S+  S + +L   A
Sbjct: 190 VDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249

Query: 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359
            D       +  E +                       +    L  P  S Q       H
Sbjct: 250 HDSNSFGCITLYETEF---------------------GERIGSLSVPTHSSQASLGEFAH 288

Query: 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ----ISWSADSR 415
              V  + F+  G+ + SA +D  ++ W+  T + +     H   +      ++      
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

Query: 416 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
            L          V+D++  K             +   +   E +     DR ++ +
Sbjct: 349 SLAEPG------VFDVKFLK---------KGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 2e-11
 Identities = 38/313 (12%), Positives = 83/313 (26%), Gaps = 75/313 (23%)

Query: 232 CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK----LIRELKGHGHWVNSL 287
                  H   +  V       + + S D  +KVW+           +      H     
Sbjct: 6   TANAGKAHDADIFSVSACNSFTV-SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 288 ALSTEYA----------LRTGAFDHTGK--QYSSPEEMKKAALERYNKIKGNA------- 328
            +    A          + T +F       + +  +E KK   E+ + +  +        
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 329 -----------PERLVSGSDDFTMFLWEPAVSKQPKTRMT-----------------GHQ 360
                        RLV+     T ++W+          +T                    
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 361 QLVNHVYFSPDGQWVASASFDKSIKL------WNGTTGKFVAVFRGHVGPVYQISWSADS 414
           Q    V  S  G  +A+   + ++++            +       +   +  + +S   
Sbjct: 185 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243

Query: 415 RLLLSGSKDSTLKVWDI----------------RTQKLKQDLPGHADEVFAVDWSPDGEK 458
            LL      ++     +                 + +       H+  V ++ ++  GE 
Sbjct: 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 303

Query: 459 VASGGKDRVLKLW 471
           + S G D  L+ W
Sbjct: 304 LCSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 6e-11
 Identities = 32/210 (15%), Positives = 62/210 (29%), Gaps = 31/210 (14%)

Query: 97  VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM------FKCTGHK 150
           +     +    ++   SV  S  G  +A+G  + TV++ +L+T  P+           + 
Sbjct: 173 LQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231

Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCW---------------DPQTGKPSGNPLSGHKKW 195
           N +  + +S  G  L     +    C                 P     +      H  W
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV----TCVKWGGD 251
           +  +S+             SA  DG  R WDV  ++ +  L+ H   +      +     
Sbjct: 292 VMSLSFND-----SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 346

Query: 252 GVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
           G          +K  +      +       
Sbjct: 347 GDSLAEPGVFDVKFLKKGWRSGMGADLNES 376

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  118 bits (295), Expect = 3e-30
 Identities = 25/362 (6%), Positives = 73/362 (20%), Gaps = 50/362 (13%)

Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD--TTVRLWDLNTQTPMFKCTGHK 150
            I+ V+            +  V    D +            + ++D  T     K   + 
Sbjct: 27  FIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL 85

Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP-----VH 205
             V  +    +       +                       +  IT  +         +
Sbjct: 86  GNVFAMGVDRN-GKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY 144

Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265
                             ++D+  RK     + ++             +Y  S       
Sbjct: 145 GFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS 204

Query: 266 WETTQGKL-------IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318
            +                +       N   L              G+             
Sbjct: 205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR-----SMTSEAGEYD----------- 248

Query: 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378
                         ++     +  +       +    +     + +         +   A
Sbjct: 249 --------------LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA 294

Query: 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438
                +  ++  T K           +  +  SAD + ++    D  +  + +   + ++
Sbjct: 295 PEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

Query: 439 DL 440
            +
Sbjct: 351 TV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  109 bits (272), Expect = 5e-27
 Identities = 37/375 (9%), Positives = 86/375 (22%), Gaps = 56/375 (14%)

Query: 113 SVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA 171
           +  FSP DG  +A  S      + D++              +  +    D K        
Sbjct: 7   AEDFSPLDGDLIAFVSRGQ-AFIQDVSGTYV--LKVPEPLRIRYVRRGGDTKVAFIHGTR 63

Query: 172 G--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
               L  +D +TGK        +   +  +  +     A            D      ++
Sbjct: 64  EGDFLGIYDYRTGKA--EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121

Query: 230 RKCVICLSGHTLAVTCVKW------GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283
            +           ++                  G     I V++    K+      + H 
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181

Query: 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343
                 +    L   ++                                     D  +  
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSP------------------------------DRVVLN 211

Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-------TGKFVA 396
           +   V  +P   +       N     P      +  +D +      +         + + 
Sbjct: 212 FSFEVVSKPFV-IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 270

Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
                +           +       +   L  +D++T+K+        + +  +  S D 
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADR 326

Query: 457 EKVASGGKDRVLKLW 471
           + V     D  +  +
Sbjct: 327 KTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 65.7 bits (158), Expect = 3e-12
 Identities = 14/142 (9%), Positives = 31/142 (21%), Gaps = 17/142 (11%)

Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW-------DLNTQTPMFKCTGHKNWVLC 155
            I     +       P      +G  D             D      +            
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
                   +     + G L  +D +T K     ++  K  +T +           +  + 
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRK-----VTEVKNNLTDLRLSA-----DRKTVMV 331

Query: 216 ASKDGDARIWDVSLRKCVICLS 237
              DG    + +   +    + 
Sbjct: 332 RKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 6/70 (8%)

Query: 405 VYQISWS-ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 463
            +   +S  D  L+   S+     + D+    + +        +  V    D +     G
Sbjct: 5   KFAEDFSPLDGDLIAFVSRG-QAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHG 61

Query: 464 KD--RVLKLW 471
                 L ++
Sbjct: 62  TREGDFLGIY 71

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score =  112 bits (280), Expect = 4e-28
 Identities = 39/368 (10%), Positives = 94/368 (25%), Gaps = 34/368 (9%)

Query: 109 EAVLSVAFSPDGRQL-----ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           E  +  A +PD R++     A  +  T   + D      +    G   ++     + DG 
Sbjct: 2   EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGS 59

Query: 164 HL----------VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
            +            G +   ++ +DP T  P+ +            ++  +    P  + 
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119

Query: 214 V---SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270
           +     S      + D+  +     L         +        +   +D ++       
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGT 177

Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
                             L    A            + +                     
Sbjct: 178 EGTPEITHTEVFHPEDEFLINHPAYSQ---KAGRLVWPTYTGKIHQIDLSSGDA------ 228

Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
           + +   +  T              ++  H+ L                +  + + + +  
Sbjct: 229 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK 288

Query: 391 TGKFVAVFRGHVGPVYQISWSAD--SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448
           TG+ +A F      +  I+ S D    L    + D TL + D  + +  + +        
Sbjct: 289 TGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 347

Query: 449 AVDWSPDG 456
            +  +  G
Sbjct: 348 VITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 93.7 bits (231), Expect = 1e-21
 Identities = 36/336 (10%), Positives = 82/336 (24%), Gaps = 38/336 (11%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLA----------SGSGDTTVRLWDLNTQTPMFKCT 147
            R    I G    + +   + DG  +A           G     V ++D  T  P     
Sbjct: 38  GRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE 95

Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
                   +        L    K      + P       +      K +  +        
Sbjct: 96  LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP 155

Query: 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW-------GGDGVIYTGSQD 260
                F    +DG                                      G +   +  
Sbjct: 156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT 215

Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
             I   + + G                         T A    G +    +++       
Sbjct: 216 GKIHQIDLSSGDAKFLPAVEAL--------------TEAERADGWRPGGWQQVAYHRALD 261

Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW--VASA 378
              +  +  +     +    + + +    ++      GH+  ++ +  S D +    A +
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE--IDSINVSQDEKPLLYALS 319

Query: 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS 414
           + DK++ + +  +G+ +      +G   Q+  +AD 
Sbjct: 320 TGDKTLYIHDAESGEELRSVNQ-LGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 79.4 bits (194), Expect = 8e-17
 Identities = 34/361 (9%), Positives = 88/361 (24%), Gaps = 86/361 (23%)

Query: 157 AWSADGKHL-----VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
           A + D + +        +   +    D + G+  G    G   ++               
Sbjct: 8   APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG---FLPNPVVAD-------- 56

Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG 271
                                     G  +A           I  G +   ++V++    
Sbjct: 57  -------------------------DGSFIAHAS---TVFSRIARGERTDYVEVFDPVTL 88

Query: 272 KLIRELKGH-------GHWVNSLALSTE-----YALRTGAFDHTGKQYSSPEEMKKAALE 319
               +++         G +    +L+ +     +   + A              +   + 
Sbjct: 89  LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 148

Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----PKTRMTGHQQLVNHVYFSPDGQW 374
               I   AP+       D ++                +      + L+NH  +S     
Sbjct: 149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 208

Query: 375 VASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQISWSADSRLLLSGSKDS-------- 424
           +   ++   I   + ++G   F+              W       ++  +          
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268

Query: 425 ------------TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKL 470
                        + V D +T +         + + +++ S D +    A    D+ L +
Sbjct: 269 QRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYI 327

Query: 471 W 471
            
Sbjct: 328 H 328

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 73.7 bits (179), Expect = 7e-15
 Identities = 24/217 (11%), Positives = 54/217 (24%), Gaps = 26/217 (11%)

Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGHKNW 152
            R ++         T          DG         + T  +       P       +  
Sbjct: 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFL 196

Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVH------ 205
           +   A+S     LV  +  G++   D  +G       +    +      W P        
Sbjct: 197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256

Query: 206 ---------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---V 253
                    L      +   +      + D    + +         +  +    D    +
Sbjct: 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLL 315

Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290
               + D T+ + +   G+ +R +   GH    +  +
Sbjct: 316 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQL--ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
               A        + S+  S D + L  A  +GD T+ + D  +   +       +    
Sbjct: 290 GERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQV 348

Query: 156 IAWSADG 162
           I  +  G
Sbjct: 349 ITTADMG 355

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 6e-28
 Identities = 71/341 (20%), Positives = 114/341 (33%), Gaps = 67/341 (19%)

Query: 103 TIAGHTEAVLSV-AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
            I   +E    V     D +++ SG  D T+++WD NT       TGH   VLC+ +   
Sbjct: 7   RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
                       +      T +            +       +HL       V+ SKD  
Sbjct: 67  VI----------ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116

Query: 222 ARIWDVSLRKCV---ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK 278
             +WD++    +     L GH  AV  V +     I + S D TIKVW T+  + +R L 
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY-IVSASGDRTIKVWNTSTCEFVRTLN 175

Query: 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338
           GH   +  L                                            +VSGS D
Sbjct: 176 GHKRGIACLQYR--------------------------------------DRLVVSGSSD 197

Query: 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG------ 392
            T+ LW+    +                    D + + S ++D  IK+W+          
Sbjct: 198 NTIRLWDI---ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254

Query: 393 ---KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
                +     H G V+++ +  D   ++S S D T+ +WD
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (246), Expect = 5e-24
 Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 7/243 (2%)

Query: 231 KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290
           + + C S  +  V C+++     I +G +D TIK+W+    +  R L GH   V  L   
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 291 TEYALRTGAFDHTGKQY--SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
               +   +          +                       +V+ S D ++ +W+ A 
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
                 R               D +++ SAS D++IK+WN +T +FV    GH   +  +
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 184

Query: 409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 468
            +    RL++SGS D+T+++WDI      + L GH + V       D +++ SG  D  +
Sbjct: 185 QY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 240

Query: 469 KLW 471
           K+W
Sbjct: 241 KVW 243

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (242), Expect = 2e-23
 Identities = 59/296 (19%), Positives = 112/296 (37%), Gaps = 27/296 (9%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
            S   K +  + ++        ++ VS  +D   +IWD +  +C   L+GHT +V C+++
Sbjct: 11  RSETSKGVYCLQYDD-------QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 249 GGDGVIYTGSQDCTIKVW----ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304
               +I   S            E     +           N+  + T    R+ A     
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
                              +     + +VS S D T+ +W  + + +    + GH++ + 
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS-TCEFVRTLNGHKRGIA 182

Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS 424
                   + V S S D +I+LW+   G  + V  GH   V  I +  D++ ++SG+ D 
Sbjct: 183 C--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG 238

Query: 425 TLKVWDIRT---------QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
            +KVWD+               + L  H+  VF + +  D  ++ S   D  + +W
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 11/95 (11%)

Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT---------QTPM 143
           R+  +   +          L      D +++ SG+ D  +++WDL              +
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
                H   V  + +  D   +VS S    +  WD
Sbjct: 261 RTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score =  107 bits (266), Expect = 2e-26
 Identities = 25/346 (7%), Positives = 71/346 (20%), Gaps = 34/346 (9%)

Query: 123 LASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDP 179
           + + +    + + D        +          +    +  G+    + +K+  L   D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI------------WDV 227
            TG+  G             S     L+   +            +            +D 
Sbjct: 64  VTGETLGRI-DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL 287
                                     +Y   +D  +   E   G L+ +           
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA--GTLVEDKPIQSWEA--- 177

Query: 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347
                       +          +      +           +     +    +   +  
Sbjct: 178 ----------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227

Query: 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407
             +     +            +P             ++ ++      +          Y 
Sbjct: 228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNASIKRV-PLPHSYYS 284

Query: 408 ISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS 453
           ++ S D   +  G     L  +D  T + K  +    +   ++   
Sbjct: 285 VNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 84.1 bits (206), Expect = 2e-18
 Identities = 30/316 (9%), Positives = 78/316 (24%), Gaps = 18/316 (5%)

Query: 163 KHLVSGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
            ++++ ++  +L   D +         ++            P    A    + + +K   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIA----YATVNKSES 57

Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGG------DGVIYTGSQDCTIKVWETTQGKLIR 275
               D+   + +  +   T         G         +        +++          
Sbjct: 58  LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117

Query: 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335
            L          A      +   A+   G +                 +  + P      
Sbjct: 118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKP-----I 172

Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
                    +P V        +             D       ++   +   +  TG+  
Sbjct: 173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232

Query: 396 AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 455
                 +   +  S + +     +    + L+ +D+      + +P      ++V+ S D
Sbjct: 233 MREVRIMDV-FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTD 290

Query: 456 GEKVASGGKDRVLKLW 471
           G  V  GG    L  +
Sbjct: 291 GSTVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 10/54 (18%), Positives = 17/54 (31%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
               +  SV  S DG  +  G     +  +D  T     +     N  + +A  
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (252), Expect = 7e-25
 Identities = 36/335 (10%), Positives = 81/335 (24%), Gaps = 52/335 (15%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
           +    TI+GH + + ++  +P    L SGS D  +  W  ++         H N ++ + 
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLD 53

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
            S   ++                                   S   V            +
Sbjct: 54  NSKAQEYSSISWDDTLKVNGIT---------------KHEFGSQPKVASANNDGFTAVLT 98

Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL 277
            D D  I        +  +  ++             +     +       +         
Sbjct: 99  NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK 158

Query: 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337
                  + +++S                    +  +                       
Sbjct: 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE----------------------- 195

Query: 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN-GTTGKFVA 396
              +     A        ++             +   VA+ S D +I +++     K + 
Sbjct: 196 ---VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252

Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431
               H   V  + W   S  L+S   D+ +K W++
Sbjct: 253 ALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.2 bits (206), Expect = 1e-18
 Identities = 44/295 (14%), Positives = 95/295 (32%), Gaps = 31/295 (10%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           +SGH K IT ++  P          +S S DG    W  S          H+  +  +  
Sbjct: 9   ISGHNKGITALTVNP---------LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDN 54

Query: 249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308
                  + S D T+KV   T+ +            ++        L         + ++
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKHEFGS----QPKVASANNDGFTAVLTNDDDLLILQSFT 110

Query: 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF 368
                        + +  +     V   +  T+ +++ +  +      T  +   +++  
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI 170

Query: 369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW-----------SADSRLL 417
           SP   ++A+      I L++  + +                              +  L+
Sbjct: 171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 230

Query: 418 LSGSKDSTLKVWDIRT-QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
            +GS D+ + ++ ++   K+ + L  H D V  + W      + S G D  +K W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 2e-06
 Identities = 6/46 (13%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
           ++ ++   +    +  H + V ++ +      L S   D  ++ W+
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  101 bits (251), Expect = 1e-24
 Identities = 50/348 (14%), Positives = 91/348 (26%), Gaps = 42/348 (12%)

Query: 86  YQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK 145
           +   A+F   P      T  G     + +  +P G ++   +G + V    + + T    
Sbjct: 3   FSQTALFPSLP-----RTARGT---AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEI 53

Query: 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPV 204
            T H +       S  G +  SG   G ++ WD           +      +  ISW+  
Sbjct: 54  YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 113

Query: 205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264
                                  +    +   +    +V         +I     +    
Sbjct: 114 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 173

Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324
                        +      +           +   D T   Y+                
Sbjct: 174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV-------------- 219

Query: 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
                     G+                  +   H   V  + +SPDG  +ASAS DK+I
Sbjct: 220 ---------DGTKTGVFEDDSL--------KNVAHSGSVFGLTWSPDGTKIASASADKTI 262

Query: 385 KLWNGTTGKFVAVFRGHVG-PVYQISWSADSRLLLSGSKDSTLKVWDI 431
           K+WN  T K              Q+      + L+S S +  +   + 
Sbjct: 263 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 93.0 bits (229), Expect = 1e-21
 Identities = 47/280 (16%), Positives = 89/280 (31%), Gaps = 20/280 (7%)

Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETT 269
            +    +         V         + H+   T  K    G    +G     +++W+TT
Sbjct: 30  DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 88

Query: 270 QGKLIRELKGHGHW----------VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
           Q   I +                  +    +                 +S   +   A  
Sbjct: 89  QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA 148

Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
             +     +    +    D            + K+    H + V+ V ++PDG   AS  
Sbjct: 149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 208

Query: 380 FDKSIKLWNGTTGKFVAV-------FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432
            D +I L+NG  G    V          H G V+ ++WS D   + S S D T+K+W++ 
Sbjct: 209 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 268

Query: 433 TQKLKQDLPGHAD-EVFAVDWSPDGEKVASGGKDRVLKLW 471
           T K+++ +P     E   +      + + S   +  +   
Sbjct: 269 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.4 bits (139), Expect = 5e-10
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 3/94 (3%)

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK 422
              +  +P G  +   +   S+      +     ++  H         S       SG  
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 423 DSTLKVW--DIRTQKLKQDLPGHADEVFAVDWSP 454
              +++W     T  LK  +P  +  V  + W  
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (132), Expect = 3e-09
 Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 403 GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462
           G    +  +     +   +  +++    + +    +    H+ +      SP G   ASG
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 463 GKDRVLKLWM 472
                +++W 
Sbjct: 77  DVHGNVRIWD 86

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.4 bits (243), Expect = 2e-23
 Identities = 42/330 (12%), Positives = 84/330 (25%), Gaps = 33/330 (10%)

Query: 111 VLSVAFSPDGRQLASGSGD-TTVRLWDLNTQT--PMFKCTGH-KNWVLCIAWS--ADGKH 164
              +++ P    +A   G    VR  D       P+ + TGH  + V  + +S     ++
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
           L SG ++G++  W     K S +     K     ++             +S   +G    
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG--------PISDISWDFEGRRLC 131

Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
                R                      V     +     + ++   + +          
Sbjct: 132 VVGEGRDNFGVFISW-----DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 186

Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344
                    A                                             + F  
Sbjct: 187 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD-----------RKISCFDG 235

Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
           +     +         Q         D Q  A+   D +I++W+ TT K V  +      
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295

Query: 405 VYQISWS---ADSRLLLSGSKDSTLKVWDI 431
           +           +  ++S S D TL  +++
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 4e-12
 Identities = 31/304 (10%), Positives = 61/304 (20%), Gaps = 44/304 (14%)

Query: 98  NRCSATIAGH-TEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQTPMFK--------C 146
                   GH +  V +V FSP    + L SG     V +W                   
Sbjct: 52  VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF 111

Query: 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
                 +  I+W  +G+ L    +  +           +                     
Sbjct: 112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171

Query: 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266
                           +                   V  V++  D   +  +     K+ 
Sbjct: 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 231

Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
                                                                    +  
Sbjct: 232 CFDGKSGEFLKYIEDDQEPV-------------------------------QGGIFALSW 260

Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQ-WVASASFDKSI 384
              ++  +   D T+ +W+   SK  +   +   Q     V     G   + S S D ++
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320

Query: 385 KLWN 388
             + 
Sbjct: 321 NFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 6/76 (7%)

Query: 403 GPVYQISWSADSRLLLSGSKDST-LKVWDIRTQKLK--QDLPGH-ADEVFAVDWSP--DG 456
                +S+   +  +      S  ++  D    K+       GH +  V  V +SP    
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 457 EKVASGGKDRVLKLWM 472
           + + SG +   + +W 
Sbjct: 78  QYLCSGDESGKVIVWG 93

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 97.0 bits (239), Expect = 4e-23
 Identities = 47/288 (16%), Positives = 79/288 (27%), Gaps = 4/288 (1%)

Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
           GH   +  ++ SADGK L S    G +  WD  TG  +      H   ITGI        
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 208 APC--RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265
                   +     G + +         +      LAV+          Y      +   
Sbjct: 70  FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129

Query: 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
                           +    +A+  + +                  +  A +       
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189

Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
             A       S     +              T H   V  V +SPD   +A+ S D S+ 
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 386 LWNGTTGKFVAV--FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431
           +WN        +     H           +   ++S  +DS +K W++
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 84.3 bits (206), Expect = 1e-18
 Identities = 49/293 (16%), Positives = 87/293 (29%), Gaps = 15/293 (5%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVK 247
             GH K IT +S          +   SA  +G    WD+S           H   +T +K
Sbjct: 8   RYGHNKAITALSSSA-----DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 248 WGGDGVIYTGSQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEYALRTGAFDHTG 304
               G ++T S D  +KV       +                LA+S +  +   A     
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK----TRMTGHQ 360
             YS  +  +       + +  +  ++ V+     +                        
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG 420
             V              +       + N         +  H   V  +SWS D+  L +G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 421 SKDSTLKVWDIRTQKLKQDL--PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
           S D+++ VW++        +    HA          +   + S G+D  +K W
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.8 bits (145), Expect = 8e-11
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-GHADEVFAV 450
           G    V  GH   +  +S SAD + L S   +  +  WDI T    +  P  HA  +  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 451 DWSPDGEKVASGGKDRVLKLWMG 473
             +  G+       D +  +  G
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAG 84

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 5/43 (11%), Positives = 17/43 (39%)

Query: 95  RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL 137
           +P +        H  + ++     +   + S   D+ ++ W++
Sbjct: 255 KPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 9e-05
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 135 WDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK--PSGNPLSGH 192
            +          T H   V C++WS D   L +GS    +  W+       P     +  
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
              +  + W            VSA +D + + W+V 
Sbjct: 269 MSSVNSVIW------LNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 14/141 (9%), Positives = 35/141 (24%), Gaps = 36/141 (25%)

Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
           G + +   GH   + +L           +    GK                         
Sbjct: 2   GSIDQVRYGHNKAITAL-----------SSSADGK------------------------- 25

Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
            L S   +  +  W+ +     +     H  ++  +  +  G     +  D    +  G 
Sbjct: 26  TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 85

Query: 391 TGKFVAVFRGHVGPVYQISWS 411
           +G   +    +      +  +
Sbjct: 86  SGVDSSKAVANKLSSQPLGLA 106

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 96.2 bits (238), Expect = 2e-22
 Identities = 28/334 (8%), Positives = 67/334 (20%), Gaps = 57/334 (17%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLA----------SGSGDTTVRLWDLNTQTPMFKCT 147
                   G   ++        G   A           G     V ++D  T  P+    
Sbjct: 56  GVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE 113

Query: 148 GHKNWVLC-------IAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199
                          I   A    L      +                      K  +  
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-----DQLTKSASCF 168

Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC------LSGHTLAVTCVKWGGDG- 252
              P             S        D++                   +    +    G 
Sbjct: 169 HIHP----GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM 224

Query: 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312
           +++  +              +   + G+     +    +          +T        E
Sbjct: 225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284

Query: 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
             ++ L                            +V +       GH    + +  + DG
Sbjct: 285 HSRSCLAAAENTS-----------------SVTASVGQTSGPISNGHD--SDAIIAAQDG 325

Query: 373 QW--VASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
                A+++  + + +++  + +  +      GP
Sbjct: 326 ASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 94.7 bits (234), Expect = 6e-22
 Identities = 30/368 (8%), Positives = 78/368 (21%), Gaps = 34/368 (9%)

Query: 101 SATIAGHTEAVLSVAFSPDGRQL---ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
           SA  A    +          R+           T   W       +        ++    
Sbjct: 13  SAAAA-SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAV 71

Query: 158 WSADGKHL----------VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW-EPVHL 206
               G               G +   ++ +DP T  P  +         +       +  
Sbjct: 72  AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131

Query: 207 NAPCRR-FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265
            A              A    V            +     +  G     Y GS   ++  
Sbjct: 132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--IHPGAAATHYLGSCPASLAA 189

Query: 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
            +             G        +   + +    ++ G    +                
Sbjct: 190 SDLAAAP-----AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGAT 244

Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
                  +  + D      +    +    +M    +  + +         +  +  ++  
Sbjct: 245 -------MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297

Query: 386 LWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL--SGSKDSTLKVWDIRTQKLKQDLP-G 442
               + G+       +      I  + D       + +    L ++D  + + +  +   
Sbjct: 298 SVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356

Query: 443 HADEVFAV 450
              E  +V
Sbjct: 357 KGPESLSV 364

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.1 bits (108), Expect = 6e-06
 Identities = 13/122 (10%), Positives = 25/122 (20%), Gaps = 13/122 (10%)

Query: 356 MTGHQQLVNHVYFSPDGQ---WVASASFDKSIKLW--NGTTGKFVAVFRGHVGPVYQISW 410
                            +       A F  + + W      G  +    G    +     
Sbjct: 15  AAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGH 74

Query: 411 --------SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462
                   S        G +   ++V+D  T     D+       F+V          + 
Sbjct: 75  SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134

Query: 463 GK 464
             
Sbjct: 135 SA 136

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 96.4 bits (239), Expect = 3e-22
 Identities = 51/373 (13%), Positives = 100/373 (26%), Gaps = 40/373 (10%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNW 152
                 +     AV     S  GR L     D  V + DL  + P         +  ++ 
Sbjct: 52  YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110

Query: 153 VLCIAWSADGKHL-VSGSKAGELQCWDPQTGKP-----SGNPLSGHKKWITGISWEPVHL 206
                   + K+         +    D +T +P     +       +++        +  
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 170

Query: 207 NAPCRRFVSASKD-GDARIWDVSLRKCVICLSGHTLAVT-CVKWGGDG--VIYTGSQDCT 262
           +     F+   K+ G   + D +    +                 G     I   +    
Sbjct: 171 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230

Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG---AFDHTGKQYSS-----PEEMK 314
           + V +T +GKL+      G   +    +       G   A  H G    +     PE   
Sbjct: 231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 290

Query: 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374
             A +  +         L   +   + +L+           +    ++   V    D + 
Sbjct: 291 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVD-------ATLNPEAEISGSVAV-FDIKA 342

Query: 375 VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL-----SGSKDSTLKVW 429
           +     D   K          A        V Q  ++ D   +         ++S L V 
Sbjct: 343 MTGDGSDPEFKTLPIAEW---AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVV 399

Query: 430 DIRTQKLKQDLPG 442
           D +T +LK  +  
Sbjct: 400 DDKTLELKHVIKD 412

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 75.6 bits (185), Expect = 2e-15
 Identities = 39/329 (11%), Positives = 89/329 (27%), Gaps = 43/329 (13%)

Query: 156 IAWSADGKHL--VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
                D ++L  V+   AG++   D  T +             TG +     L+A  R  
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIK-------TVLDTGYAVHISRLSASGRYL 76

Query: 214 VSASKDGDARIWDVSLRKC-----VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVW 266
               +DG   + D+ +++      +   S      T    G +    I          + 
Sbjct: 77  FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
           +    +  +     G   +      E  +      H                        
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR---------------------- 174

Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
             PE +V+  +   + L +       KT     ++ ++        ++  +A+  ++  +
Sbjct: 175 --PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV 232

Query: 387 WNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR---TQKLKQDLPGH 443
              T    +       G        A+      G   +T  + D          +  P +
Sbjct: 233 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN 292

Query: 444 ADEVFAVDWSPDGEKVASGGKDRVLKLWM 472
           A ++     +  G  +          L++
Sbjct: 293 AWKILDSFPALGGGSLFIKTHPNSQYLYV 321

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.7 bits (141), Expect = 6e-10
 Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 8/109 (7%)

Query: 364 NHVYFSPDGQW--VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS 421
                  D +     +      I L +G+T +   V        +    SA  R L    
Sbjct: 22  TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVIG 80

Query: 422 KDSTLKVWDIRTQKLKQDLP-----GHADEVFAVDWSPDGEKVASGGKD 465
           +D  + + D+  ++                  +     + +   +G   
Sbjct: 81  RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW 129

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 86.9 bits (214), Expect = 4e-19
 Identities = 42/367 (11%), Positives = 93/367 (25%), Gaps = 35/367 (9%)

Query: 114 VAFSPDGRQLA--SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA 171
                D   L   +      + L D +++  +         V     SA G++L+   + 
Sbjct: 24  QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRD 82

Query: 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR- 230
             +   D    +P+             +                A       I D     
Sbjct: 83  ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142

Query: 231 -KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA- 288
            K ++   G T+                S +    +    +   +  +        ++  
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 202

Query: 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
           +     L  G +D + + + +            +K                 + + +   
Sbjct: 203 IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK----------DRRLSALVDVGKTPH 252

Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             +    +      V       DG      +  K+   +     K VA  +G  G    I
Sbjct: 253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFI 309

Query: 409 SWS-------ADSRLLLSGSKDSTLKVWDIRTQKLKQ---------DLPGHADEVFAVDW 452
                      D+          ++ V+D++    K          DL   A  V   ++
Sbjct: 310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369

Query: 453 SPDGEKV 459
           +  G++V
Sbjct: 370 NKRGDEV 376

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 81.5 bits (200), Expect = 2e-17
 Identities = 50/379 (13%), Positives = 98/379 (25%), Gaps = 56/379 (14%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNW 152
            +    I     AV     S  GR L     D  + + DL  + P            ++ 
Sbjct: 52  KKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110

Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
                   + ++ ++G+                   +S     +   ++ P     P   
Sbjct: 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP----EPRVA 166

Query: 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVT-CVKWGGDGVIYTGSQDCTIKVWETTQG 271
            + AS +    I +V     V+ ++   +        G    +  G  D + + + T   
Sbjct: 167 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAA- 225

Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
                     +  N +A+      R  A    GK                       P  
Sbjct: 226 ----------NNSNKVAVIDSKDRRLSALVDVGKTPHP-------GRGANFVHPKYGPVW 268

Query: 332 LVSGSDDFTMFLWE------PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA-------SA 378
             S   D ++ L        P  + +    + G       +   P    +         A
Sbjct: 269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 328

Query: 379 SFDKSIKLWNGTTGKFV---------AVFRGHVGPVYQISWSADSRLLL-----SGSKDS 424
              +S+ +++                A        V Q  ++     +        +  S
Sbjct: 329 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 388

Query: 425 TLKVWDIRTQKLKQDLPGH 443
            L V D +T KLK  +   
Sbjct: 389 ALVVVDDKTLKLKAVVKDP 407

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 60.0 bits (144), Expect = 2e-10
 Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 365 HVYFSPDGQW--VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK 422
                 D       +      I L +G + K V V        +    SA  R LL   +
Sbjct: 23  KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGR 81

Query: 423 DSTLKVWDIRTQKLK-----QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472
           D+ + + D+  ++       +          +     +     +G         M
Sbjct: 82  DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 68.7 bits (166), Expect = 2e-13
 Identities = 35/289 (12%), Positives = 76/289 (26%), Gaps = 16/289 (5%)

Query: 125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGK 183
           + S    + + D+ +           N  +    S DG  + V+ + + ++   D  T  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243
                 +G       +S +   +        + S             K      G     
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL---- 121

Query: 244 TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGH-------WVNSLALSTEYALR 296
             +   G  +  T + D T+ V  T    +I  +               +      +   
Sbjct: 122 -ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSM 180

Query: 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM 356
           + +   T           +AA              + +    F         + +   R+
Sbjct: 181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240

Query: 357 TGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
                    +  +PDG+ V  + SF  ++ + +  T    A       P
Sbjct: 241 PVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 52.6 bits (124), Expect = 3e-08
 Identities = 28/286 (9%), Positives = 75/286 (26%), Gaps = 18/286 (6%)

Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR-FVSASKDGDARI 224
           ++ S++  +   D  + K +            G +     ++    + +V+ +   D  I
Sbjct: 6   IANSESDNISVIDVTSNKVT-------ATIPVGSNPMGAVISPDGTKVYVANAHSNDVSI 58

Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
            D +    +  +   +             +Y  +   +      T    +      G   
Sbjct: 59  IDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP 118

Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKK--------AALERYNKIKGNAPERLVSGS 336
             LALS +        +            K          + +            + +  
Sbjct: 119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFD 178

Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
                 +     S     ++      +                +  ++ + +  T K  A
Sbjct: 179 SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238

Query: 397 VFRGHVGPVYQISWSAD-SRLLLSGSKDSTLKVWDIRTQKLKQDLP 441
                  P   I+ + D  ++ ++ S  +T+ V D  T  +   + 
Sbjct: 239 RIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 30/269 (11%), Positives = 74/269 (27%), Gaps = 12/269 (4%)

Query: 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ 270
           +++ S+  +  + DV+  K    +   +          DG  V    +    + + +T  
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY----NKIKG 326
             +I  +                 +       +            A   +       +  
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123

Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
           +   + +  +++    +       +         +    +  +PDG  V  A+FD     
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183

Query: 387 WNGTTGKFVAVFRGHVGPVY---QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH 443
              T    V                     + +       +T+ + D  T K+   +P  
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243

Query: 444 ADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
            D    +  +PDG+KV  +      + + 
Sbjct: 244 PD-PAGIAVTPDGKKVYVALSFCNTVSVI 271

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 61.0 bits (146), Expect = 7e-11
 Identities = 31/306 (10%), Positives = 64/306 (20%), Gaps = 24/306 (7%)

Query: 106 GHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNW---VLCIAWSAD 161
                V  +  SPD R L      +  V  + +                  +  I+    
Sbjct: 34  DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ 93

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
           G+             +       + +          G+      L+       + S D  
Sbjct: 94  GQF-----------VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGC--HSANISPDNR 140

Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
                   +  +   +         +   +     G+    +      Q           
Sbjct: 141 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS 200

Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
             V  L             D   + +S         +    +            +   T+
Sbjct: 201 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH----LYACDRTASLITV 256

Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLW--NGTTGKFVAVF 398
           F      S   K      +           G+++ +A      I ++   G  G      
Sbjct: 257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 316

Query: 399 RGHVGP 404
           R  VG 
Sbjct: 317 RYAVGQ 322

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 26/347 (7%), Positives = 61/347 (17%), Gaps = 65/347 (18%)

Query: 125 SGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQT 181
           +      + +W+LN +  +   +       V  +  S D ++L V       +  +    
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL 241
              +           + +     H        +S    G            V        
Sbjct: 69  DDGAL-----TFAAESALPGSLTH--------ISTDHQGQFVFVGSYNAGNVSVTRLEDG 115

Query: 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
               V    +                                 +S               
Sbjct: 116 LPVGVVDVVE----------------------------GLDGCHSAN------------I 135

Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
               +      +K+  +  +                          +          ++Q
Sbjct: 136 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM------VFHPNEQ 189

Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS 421
               V        V              T       F                 L     
Sbjct: 190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 249

Query: 422 KDSTLKVWDIRTQKLKQDLPGHA---DEVFAVDWSPDGEKVASGGKD 465
             S + V+ +          G      +    +    G+ + + G+ 
Sbjct: 250 TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK 296

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 9/86 (10%), Positives = 22/86 (25%), Gaps = 5/86 (5%)

Query: 333 VSGSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGT 390
           ++  +   + +W                   V  +  SPD +++      +  +  +   
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 391 TGKFVAVFRG---HVGPVYQISWSAD 413
                  F       G +  IS    
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQ 93

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 49/371 (13%), Positives = 92/371 (24%), Gaps = 75/371 (20%)

Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTP--------- 142
            I   ++       H   +       DG+ L  +   +T V    L+             
Sbjct: 56  EILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV 115

Query: 143 ------MFKCTGHKNWVLC-----IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG 191
                   +     N+V C     I    DG      +        D +T   +   +  
Sbjct: 116 QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD 175

Query: 192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWG 249
               +     +     A      +      A     ++R     + +         VK G
Sbjct: 176 GN--LDNTDADYTGKYA----TSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG 229

Query: 250 GDGVIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYS 308
                  G       V    + +  R +         + +   +Y +  G    T    +
Sbjct: 230 --NFKTIGDSK-VPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIA 286

Query: 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF 368
             +++        +KI+                      +  +P+  +        H  F
Sbjct: 287 I-DKLDDLF---EDKIE------------------LRDTIVAEPELGL-----GPLHTTF 319

Query: 369 SPDGQ---------WVASASFDKSIKLWNGTTGKF------VAVFRGHVGPVYQISWSAD 413
              G           V   +   +IK +NG    +      V    GH       S  AD
Sbjct: 320 DGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDAD 379

Query: 414 SRLLLSGSKDS 424
            + L+  SK S
Sbjct: 380 GKWLVVLSKFS 390

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 36/320 (11%), Positives = 75/320 (23%), Gaps = 61/320 (19%)

Query: 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
             SG   GE++        PS   L      I   +                  +    I
Sbjct: 14  FWSGGHQGEVRVLGV----PSMREL----MRIPVFN--------VDSATGWGITNESKEI 57

Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELK-GHG 281
                +   +    H   ++      DG  +      +  +        K  +     + 
Sbjct: 58  LGGDQQ--YLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV 115

Query: 282 HWVNSLALS----TEYAL----RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333
             ++ L L     T Y            + G  +S                         
Sbjct: 116 QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM-----------------F 158

Query: 334 SGSDDFTMF-LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392
           +  D  TM   W+  V               ++      G++  S  ++    +    T 
Sbjct: 159 TAIDAETMDVAWQVIVDGNL-----------DNTDADYTGKYATSTCYNSERAVDLAGTM 207

Query: 393 KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW 452
           +    +          +          G       V      +  + +P        ++ 
Sbjct: 208 RNDRDWVVVFNVERIAAAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVP-KNPHGLNT 265

Query: 453 SPDGEK-VASGGKDRVLKLW 471
           SPDG+  +A+G     + + 
Sbjct: 266 SPDGKYFIANGKLSPTVSVI 285

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 34/383 (8%), Positives = 95/383 (24%), Gaps = 36/383 (9%)

Query: 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTV---------RLWDLNTQTPMFKCTGHKN 151
           ++T      ++   + SPDG+ +                   ++DLN +  + +     N
Sbjct: 54  NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-ERIPN 112

Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
               + WS  G   ++     ++               +G +  I     + V+      
Sbjct: 113 NTQWVTWSPVGHK-LAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171

Query: 212 RFVSA--SKDGDARIWDVSLRKCV-----ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264
            + +   S +G    +       V        S  +L                +      
Sbjct: 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF 231

Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324
           V  T     +           +  L  ++ L    +    +         +         
Sbjct: 232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDIC- 290

Query: 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ--WVASASFDK 382
                      S  +   +    +       +   +    H     +     +++    +
Sbjct: 291 ------DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR 344

Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI---------RT 433
            I  +         + +G    +   + ++D    +S          ++         + 
Sbjct: 345 HICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKV 404

Query: 434 QKLKQDLPGHADEVFAVDWSPDG 456
             L  +L     + ++V +S + 
Sbjct: 405 TCLSCELNPERCQYYSVSFSKEA 427

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 5/172 (2%)

Query: 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG 172
           ++A +PDG    +      +     +    +      +  V  +A++++G  + +G  A 
Sbjct: 32  NLASAPDGTIFVTNHEVGEIVSITPDGNQQIH--ATVEGKVSGLAFTSNGDLVATGWNAD 89

Query: 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
            +          +             I    +   +  +   + S  G   + DV     
Sbjct: 90  SIPVVSLVKSDGTVET---LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 146

Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
            I L    LA +  +               + V  T +  L+R         
Sbjct: 147 SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKP 198

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 34/247 (13%), Positives = 65/247 (26%), Gaps = 15/247 (6%)

Query: 103 TIAGHTEAVLSVAFSPDGRQLA--SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA 160
            +    + ++S A+SPDG +LA  +     +  +        + +           A+S 
Sbjct: 33  VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 92

Query: 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
           DG  L                     +            + EP           ++ + G
Sbjct: 93  DGSKLAFALSKTGSLNLYVMDLA---SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG 149

Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH 280
             +++ V++                   G        S D    V  ++ G      K  
Sbjct: 150 RPQVYKVNINGGAPQR--------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 201

Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQ-YSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
                   LS+ +   T +    G     S  +   + L   +   G    RL +     
Sbjct: 202 LATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS-TDGRFKARLPATDGQV 260

Query: 340 TMFLWEP 346
               W P
Sbjct: 261 KFPAWSP 267

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	473
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.66
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.6
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.59
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.14
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.12
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.11
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.02
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.95
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.92
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.9
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.89
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.88
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.88
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.76
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.6
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.54
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.51
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.35
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.18
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.1
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.02
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.77
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.73
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.7
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.65
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.49
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.22
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.2
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.15
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.03
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.98
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.59
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.57
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.24
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.43
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.41
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.92
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	92.73
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.36
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	90.91
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.52
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	90.24
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	89.72
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.19
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.34
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	88.18
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	83.89
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.04
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	81.87

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-45  Score=336.99  Aligned_cols=308  Identities=28%  Similarity=0.444  Sum_probs=269.7

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      ....|.||.++|++++|+|++++||||+.||+|+|||+.+++.+..+.+|...|.+++|+|++..++++..++.+..|+.
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~  258 (473)
                      ...+.. ..+.+|...+..+.+.|     +...+++++.|+.+++||+++++.+..+.+|...+.+++|++++ .+++++
T Consensus        89 ~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  162 (317)
T d1vyhc1          89 QGFECI-RTMHGHDHNVSSVSIMP-----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS  162 (317)
T ss_dssp             TSSCEE-ECCCCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccc-cccccccccceeeeccC-----CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEe
Confidence            776543 34677888898888876     45689999999999999999999999999999999999999987 588999


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|+.|++|+..+++....+..+...+..+.+.+........                                       
T Consensus       163 ~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------------------------------  203 (317)
T d1vyhc1         163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS---------------------------------------  203 (317)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGG---------------------------------------
T ss_pred             CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceee---------------------------------------
Confidence            99999999999999999999998888888877653210000                                       


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEE
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL  418 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~  418 (473)
                                          .........+..++.++++|+.|+.|++||..+++++..+.+|...|.+++|+|++++|+
T Consensus       204 --------------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  263 (317)
T d1vyhc1         204 --------------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL  263 (317)
T ss_dssp             --------------------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE
T ss_pred             --------------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEE
Confidence                                000111223445688999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       419 s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +|+.||.|++||+.+++.+..+.+|...|++++|+|++++|++|+.|++|+||+
T Consensus       264 s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999999999999999999999999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-43  Score=329.04  Aligned_cols=279  Identities=21%  Similarity=0.416  Sum_probs=242.7

Q ss_pred             CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce-----eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-----MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      +|...|.+++|+|+|++||+|+ ||.|+|||+.+...     .....+|.+.|.+++|+|||++|++|+.||.|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            6999999999999999999987 89999999975431     22345799999999999999999999999999999987


Q ss_pred             CCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978          181 TGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (473)
Q Consensus       181 ~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~  258 (473)
                      .... ....+..|...+..+.|+|     +...+++++.|+.+++||+.++++.....+|...|.+++|++++ .+++++
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~  202 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5432 2334567888899988876     45689999999999999999999999999999999999999887 688899


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|+.+++||+++++.+..+                                                             
T Consensus       203 ~d~~v~i~d~~~~~~~~~~-------------------------------------------------------------  221 (337)
T d1gxra_         203 LDNTVRSWDLREGRQLQQH-------------------------------------------------------------  221 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEE-------------------------------------------------------------
T ss_pred             ccccccccccccceeeccc-------------------------------------------------------------
Confidence            9999999999877654321                                                             


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEE
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL  418 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~  418 (473)
                                         .|...|.+++|+|++++|++|+.|+.+++||..+++.. ....|.+.|++++|+|+|++|+
T Consensus       222 -------------------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~  281 (337)
T d1gxra_         222 -------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFV  281 (337)
T ss_dssp             -------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEE
T ss_pred             -------------------ccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEE
Confidence                               12345888999999999999999999999999988765 4567999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       419 s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +++.||.|++||+.+++.+..+ +|...|++++|+||+++|++|+.|++|+||+
T Consensus       282 s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            9999999999999998887765 4778999999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-43  Score=329.51  Aligned_cols=289  Identities=31%  Similarity=0.522  Sum_probs=241.7

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc------------------CCCCCEEEEEECCCCCeEE
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------------------GHKNWVLCIAWSADGKHLV  166 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~------------------~~~~~v~~l~~s~dg~~l~  166 (473)
                      .+|++.|+|++|+|||++||+|+ |++|+|||+.++..+..+.                  .|...|.+++|+|+|++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            36999999999999999999986 8999999998876554432                  4667799999999999999


Q ss_pred             EEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEE
Q 011978          167 SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (473)
Q Consensus       167 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  246 (473)
                      +|+.||.|++||...++... ...+|...|.++.+.+     ....+++++.++.+++||..+.........+...+...
T Consensus       138 s~~~dg~v~i~~~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  211 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFP-----SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  211 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             eccccccccccccccccccc-cccccccccccccccc-----ccccccccccceeeeeeecccccccccccccccccccc
Confidence            99999999999998887654 4678999999998876     45688999999999999999998888777766655555


Q ss_pred             EecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978          247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (473)
Q Consensus       247 ~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
                      .+..++ .+++++.|+.|++||..++.....+..                                              
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~----------------------------------------------  245 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS----------------------------------------------  245 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------------------
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCccceeecc----------------------------------------------
Confidence            555555 688999999999999988766544321                                              


Q ss_pred             CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc------------
Q 011978          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------------  393 (473)
Q Consensus       326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~------------  393 (473)
                                                ......+|...|.+++|+|++++|++|+.|+.|++||+.++.            
T Consensus       246 --------------------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  299 (388)
T d1erja_         246 --------------------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  299 (388)
T ss_dssp             -------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred             --------------------------ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccc
Confidence                                      011233577889999999999999999999999999987643            


Q ss_pred             eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEE------eeCCCEEEEEeCCCc
Q 011978          394 FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW------SPDGEKVASGGKDRV  467 (473)
Q Consensus       394 ~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~------s~d~~~l~s~~~D~~  467 (473)
                      .......|...|.+++|+|++++|++|+.||.|++||+.+++.+.++.+|.+.|+++++      +||+++||||+.|++
T Consensus       300 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~  379 (388)
T d1erja_         300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  379 (388)
T ss_dssp             EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             eeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCE
Confidence            34455678999999999999999999999999999999999999999999999999875      678999999999999


Q ss_pred             EEecc
Q 011978          468 LKLWM  472 (473)
Q Consensus       468 i~~w~  472 (473)
                      |+||+
T Consensus       380 I~iW~  384 (388)
T d1erja_         380 ARIWK  384 (388)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.1e-42  Score=315.65  Aligned_cols=287  Identities=25%  Similarity=0.457  Sum_probs=247.4

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~  180 (473)
                      ..+|.||.+.|++++|+|++++||+|+.||+|+|||+.++..+..+..|..+|.+++|+|+++++++|+.|+.+++|+..
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             CCccc---cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEE
Q 011978          181 TGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT  256 (473)
Q Consensus       181 ~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s  256 (473)
                      .....   ...+.+|...........      ...+.....+.....++............+...+.+..+.+.+ .+++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         128 TREGNVRVSRELAGHTGYLSCCRFLD------DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             SSCSCCCEEEEECCCSSCEEEEEEEE------TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccceeccccccccccccccc------ccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            54322   123455665555444332      2467788889999999998888877777788888888887765 5788


Q ss_pred             eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (473)
Q Consensus       257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (473)
                      ++.|+.|++||+++++.+..+                                                           
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~~-----------------------------------------------------------  222 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQTF-----------------------------------------------------------  222 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEE-----------------------------------------------------------
T ss_pred             eecCceEEEEECCCCcEEEEE-----------------------------------------------------------
Confidence            999999999998876654433                                                           


Q ss_pred             CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee--CCccCEEEEEEecCC
Q 011978          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQISWSADS  414 (473)
Q Consensus       337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~sp~g  414 (473)
                                          .+|...|++++|+|++++|++|+.|+.|++||....+.+..+.  .|...|.+++|+|++
T Consensus       223 --------------------~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
T d1tbga_         223 --------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             --------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS
T ss_pred             --------------------eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCC
Confidence                                2455678899999999999999999999999999988776653  466789999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          415 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++|++|+.||.|++||+.+++.+..+.+|...|++++|+||+++|+|||.||+|+||+
T Consensus       283 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999995

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.6e-42  Score=312.11  Aligned_cols=279  Identities=22%  Similarity=0.381  Sum_probs=238.0

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc-
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS-  185 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~-  185 (473)
                      +.+.+..++++|+|+.||.++ ++.|.+||+.+......+.+|...|.+++|+|+|++|++|+.||+|++||+.++... 
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            344566789999999999986 567999999998888888999999999999999999999999999999999887643 


Q ss_pred             cccCCCcCCcEEEEEeceeccCCCCceEEEeeC--CCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEEEeecCC
Q 011978          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDC  261 (473)
Q Consensus       186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~  261 (473)
                      ...+.+|...|.++.|+|     ++.++++++.  ++.+++|++.+++....+.+|...|++++|++++  .+++|+.|+
T Consensus        95 ~~~~~~~~~~v~~v~~s~-----d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~  169 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDS-----ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN  169 (311)
T ss_dssp             EEEEECSSSCEEEEEECT-----TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred             ccccccccCccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            234678999999999987     4567888875  4569999999999888899999999999999876  478899999


Q ss_pred             eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (473)
Q Consensus       262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  341 (473)
                      .|++||+++++....+                                                                
T Consensus       170 ~i~i~d~~~~~~~~~~----------------------------------------------------------------  185 (311)
T d1nr0a1         170 TVAIFEGPPFKFKSTF----------------------------------------------------------------  185 (311)
T ss_dssp             CEEEEETTTBEEEEEE----------------------------------------------------------------
T ss_pred             cccccccccccccccc----------------------------------------------------------------
Confidence            9999999876543322                                                                


Q ss_pred             EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee-------CCccCEEEEEEecCC
Q 011978          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-------GHVGPVYQISWSADS  414 (473)
Q Consensus       342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~-------~h~~~v~~v~~sp~g  414 (473)
                                     .+|...|++++|+|++++|++|+.|+.|++||..++..+..++       +|.+.|++++|+|++
T Consensus       186 ---------------~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         186 ---------------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             ---------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             ---------------ccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence                           2355678999999999999999999999999999988777654       588999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeecccccCC---CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          415 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD---EVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       415 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~---~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++|++|+.||+|+|||+++++.++++..|..   .+.++.|  ++++|++++.||.|++|+
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVN  309 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEe
Confidence            9999999999999999999998888876643   4444544  567899999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4e-40  Score=309.18  Aligned_cols=298  Identities=16%  Similarity=0.253  Sum_probs=235.6

Q ss_pred             CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc
Q 011978          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~  184 (473)
                      +.++|+|++|+|||++||+|+.|+.|+|||+.+++  ....+.+|.++|.+++|+|++++|++|+.|++|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            34689999999999999999999999999998775  4566789999999999999999999999999999999987653


Q ss_pred             c-cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe----EEEEecCccccEEEEEecCCC-eEEEee
Q 011978          185 S-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (473)
Q Consensus       185 ~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~l~s~~  258 (473)
                      . ...+.+|...|.++.|+|     ++..|++++.|+++++|++....    ......+|...|.+++|+|++ .|++|+
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p-----~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s  160 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAP-----NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  160 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECT-----TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccccc-----ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccc
Confidence            3 234567889999999987     45789999999999999876543    334456789999999999987 588999


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|+++++||..............                                                         
T Consensus       161 ~D~~v~v~~~~~~~~~~~~~~~~---------------------------------------------------------  183 (371)
T d1k8kc_         161 CDFKCRIFSAYIKEVEERPAPTP---------------------------------------------------------  183 (371)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBT---------------------------------------------------------
T ss_pred             cCcEEEEEeeccCcccccccccc---------------------------------------------------------
Confidence            99999999986543221110000                                                         


Q ss_pred             ceEEEEeCCC-CCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978          339 FTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL  417 (473)
Q Consensus       339 ~~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l  417 (473)
                           |+... .........+|...|.+++|+|+|++|++++.|+.|++||..+++.+..+..|..+|.+++|+||+++|
T Consensus       184 -----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~l  258 (371)
T d1k8kc_         184 -----WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV  258 (371)
T ss_dssp             -----TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE
T ss_pred             -----ccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEE
Confidence                 00000 011223345678889999999999999999999999999999999999999999999999999999888


Q ss_pred             EEEeCCCcEEEEECC--CCceee---------------------------------------cccccCCCEEEEEEeeCC
Q 011978          418 LSGSKDSTLKVWDIR--TQKLKQ---------------------------------------DLPGHADEVFAVDWSPDG  456 (473)
Q Consensus       418 ~s~s~Dg~i~iwd~~--~~~~~~---------------------------------------~~~~h~~~i~~l~~s~d~  456 (473)
                      ++|+ |+.+++|...  .++...                                       ....|...|+++++.+++
T Consensus       259 a~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~  337 (371)
T d1k8kc_         259 AAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG  337 (371)
T ss_dssp             EEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEEST
T ss_pred             EEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCC
Confidence            8765 6766666432  211100                                       001388889999998865


Q ss_pred             ----CEEEEEeCCCcEEecc
Q 011978          457 ----EKVASGGKDRVLKLWM  472 (473)
Q Consensus       457 ----~~l~s~~~D~~i~~w~  472 (473)
                          ..|+|+|.||.|+||+
T Consensus       338 ~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         338 KAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             TTSCSEEEEEETTSEEEEEE
T ss_pred             CcceEEEEEEcCCCeEEEEe
Confidence                3589999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-39  Score=300.17  Aligned_cols=320  Identities=25%  Similarity=0.392  Sum_probs=246.7

Q ss_pred             cccccCCcccE-EEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          101 SATIAGHTEAV-LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       101 ~~~~~gh~~~V-~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      ..+|+||.+.| .|++|  ++++||||+.||+|+|||+.+++++..+.+|.++|.+++|+|+ .+|++|+.|+.|++|+.
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            34688999986 55555  6889999999999999999999999999999999999999986 58999999999999999


Q ss_pred             CCCccccccCCC-cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-----------------------
Q 011978          180 QTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-----------------------  235 (473)
Q Consensus       180 ~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-----------------------  235 (473)
                      ...+........ +........+.     .+...+++++.|+.+++||+........                       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEY-----KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEE-----TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             cccccccccccccccccccccccc-----cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence            887654322222 22222222222     2456789999999999999987544322                       


Q ss_pred             ecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978          236 LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (473)
Q Consensus       236 ~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (473)
                      ...|...+.+...+ ...++++..|+.+++||+.+++.+....++...+.++.+++.                       
T Consensus       157 ~~~~~~~v~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  212 (355)
T d1nexb2         157 LRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE-----------------------  212 (355)
T ss_dssp             EECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-----------------------
T ss_pred             eeeccccccccccc-cceeeeecccceeeeeecccccceeeeecccccccccccccc-----------------------
Confidence            22334444444333 237889999999999999999988888887777777766653                       


Q ss_pred             HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE
Q 011978          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (473)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~  395 (473)
                                   ...+++++.|+.+++||.... .....+.+|...|.++++++  ++|++|+.||.|++||.+++...
T Consensus       213 -------------~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         213 -------------RKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             -------------TTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE
T ss_pred             -------------ceeeecccccceEEeeecccc-cccccccccccccccccccc--ceeeeeeccccccccccccccee
Confidence                         346889999999999998654 44566788999999999874  69999999999999999887654


Q ss_pred             EEeeCCccCEEEE-EEecCCCEEEEEeCCCcEEEEECCCCceee-cccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          396 AVFRGHVGPVYQI-SWSADSRLLLSGSKDSTLKVWDIRTQKLKQ-DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       396 ~~~~~h~~~v~~v-~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                        +..|...+.++ .+++++++|++|+ ||.|++||+++++.+. .+.+|.+.|++++|+|+ ..+++++.||+++||.
T Consensus       277 --~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         277 --FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             --EEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             --cccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence              44566666665 4577887777665 8999999999998774 57789999999999987 5788899999988773

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3e-39  Score=293.79  Aligned_cols=283  Identities=19%  Similarity=0.284  Sum_probs=208.4

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      ....+.||.++|++++|+|++++||+|+.||+|++||++++++...+ .+|...|.+++|+|+|+ +++++.|+.+++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence            34567899999999999999999999999999999999998877666 47899999999999986 66777899999999


Q ss_pred             CCCCccc--cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEE
Q 011978          179 PQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY  255 (473)
Q Consensus       179 ~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~  255 (473)
                      .......  ......+...+..+.+.|     ++ .+++++.++.+++|+...  ......  ...+.+++|++++ .++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~g-~~~~~~~~~~i~~~~~~~--~~~~~~--~~~~~~~~~s~~~~~l~  152 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSA-----DG-DIAVAACYKHIAIYSHGK--LTEVPI--SYNSSCVALSNDKQFVA  152 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECT-----TS-SCEEEEESSEEEEEETTE--EEEEEC--SSCEEEEEECTTSCEEE
T ss_pred             cCCcccccccccccccccccccccccc-----cc-cccccccccccccccccc--cccccc--ccccccccccccccccc
Confidence            7654321  111223445556666554     22 234444556677776432  222222  2345666666665 355


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +|+.|+.|++||+++++.                                                              
T Consensus       153 ~g~~dg~i~~~d~~~~~~--------------------------------------------------------------  170 (299)
T d1nr0a2         153 VGGQDSKVHVYKLSGASV--------------------------------------------------------------  170 (299)
T ss_dssp             EEETTSEEEEEEEETTEE--------------------------------------------------------------
T ss_pred             cccccccccccccccccc--------------------------------------------------------------
Confidence            666777777776544321                                                              


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE---EEeeCCccCEEEEEEec
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV---AVFRGHVGPVYQISWSA  412 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~---~~~~~h~~~v~~v~~sp  412 (473)
                                      .......|...|++++|+|++++|++++.|+.|++||..++...   ..+.+|..+|++++|+|
T Consensus       171 ----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         171 ----------------SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             ----------------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred             ----------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                            11123346678999999999999999999999999999877654   34667999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcee--eccccc-CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          413 DSRLLLSGSKDSTLKVWDIRTQKLK--QDLPGH-ADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       413 ~g~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~h-~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++++|++|+.||.|++||++++...  .....| ...|..+.| +++++|++++.|++|++|+
T Consensus       235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence            9999999999999999999875432  223333 456666655 5578999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-38  Score=292.31  Aligned_cols=319  Identities=27%  Similarity=0.503  Sum_probs=255.8

Q ss_pred             cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      ++...|+||++.|.+ +++++|++||||+.||+|+|||+.+++++..+.+|...|.+++|+|+  +|++|+.|+.+++|+
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN   83 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccc
Confidence            345678999999875 36778999999999999999999999999999999999999999874  999999999999999


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEee
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS  258 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~  258 (473)
                      ........ ....+...+......       ...+..+..|+.+.+|+..+++....+..+........ .....++.++
T Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  154 (342)
T d2ovrb2          84 AETGECIH-TLYGHTSTVRCMHLH-------EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ-YDGRRVVSGA  154 (342)
T ss_dssp             TTTTEEEE-EECCCSSCEEEEEEE-------TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE-ECSSCEEEEE
T ss_pred             ccccccee-cccccceeEeeeecc-------cccccccccceeEEEeecccccceeeeecccccceeec-cccceeeeec
Confidence            87665432 222333344433322       24677889999999999999888777665554444333 3345788999


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .|+.+++||....+.+..+.+|...+......                                      +..+++++.|
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~l~s~~~d  196 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--------------------------------------GIHVVSGSLD  196 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--------------------------------------SSEEEEEETT
T ss_pred             CCCeEEEeecccceeeEEEcCcccccccccCC--------------------------------------CCEEEEEeCC
Confidence            99999999999998888888877666555432                                      2368999999


Q ss_pred             ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC---CccCEEEEEEecCCC
Q 011978          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQISWSADSR  415 (473)
Q Consensus       339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~---h~~~v~~v~~sp~g~  415 (473)
                      +.+++||.... .......+|...+.+++++  +++|++|+.|+.|++||....+....+..   |...+.++.++  ++
T Consensus       197 g~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  271 (342)
T d2ovrb2         197 TSIRVWDVETG-NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN  271 (342)
T ss_dssp             SCEEEEETTTC-CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS
T ss_pred             CeEEEeecccc-eeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CC
Confidence            99999998654 3455677888888887775  46999999999999999999888777765   55667777665  56


Q ss_pred             EEEEEeCCCcEEEEECCCCceeecc-----cccCCCEEEEEEeeCCCEEEEEeCCCc----EEecc
Q 011978          416 LLLSGSKDSTLKVWDIRTQKLKQDL-----PGHADEVFAVDWSPDGEKVASGGKDRV----LKLWM  472 (473)
Q Consensus       416 ~l~s~s~Dg~i~iwd~~~~~~~~~~-----~~h~~~i~~l~~s~d~~~l~s~~~D~~----i~~w~  472 (473)
                      ++++|+.||+|++||+++++.++++     .+|...|++++|+|++.+|++|+.||+    |++|+
T Consensus       272 ~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             eeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence            9999999999999999998877654     367788999999999999999999985    88885

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.1e-38  Score=285.24  Aligned_cols=254  Identities=24%  Similarity=0.304  Sum_probs=214.8

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee--EEEcCCCCCEEEEEECCCCCeEEEEec--CCeEE
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQ  175 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~--~~~~~~~~~v~~l~~s~dg~~l~s~~~--dg~i~  175 (473)
                      ....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++...  ..+..|..+|.+++|+|++++|++++.  +..++
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~  129 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH  129 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccc
Confidence            44567899999999999999999999999999999999887644  456789999999999999999999875  45699


Q ss_pred             EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eE
Q 011978          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (473)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l  254 (473)
                      +|++++++... .+.+|...|.++.|+|..    ...+++|+.|+.|++||+++++....+.+|...|+++.|++++ .+
T Consensus       130 v~~~~~~~~~~-~l~~h~~~v~~v~~~~~~----~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l  204 (311)
T d1nr0a1         130 VFLFDTGTSNG-NLTGQARAMNSVDFKPSR----PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF  204 (311)
T ss_dssp             EEETTTCCBCB-CCCCCSSCEEEEEECSSS----SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccc-cccccccccccccccccc----eeeecccccccccccccccccccccccccccccccccccCcccccc
Confidence            99999887554 578899999999998732    2358899999999999999999999999999999999999987 58


Q ss_pred             EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (473)
Q Consensus       255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (473)
                      ++++.|+.+++||..++.....+..                                                       
T Consensus       205 ~~~~~d~~v~~~d~~~~~~~~~~~~-------------------------------------------------------  229 (311)
T d1nr0a1         205 ASTGGDGTIVLYNGVDGTKTGVFED-------------------------------------------------------  229 (311)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBC-------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccc-------------------------------------------------------
Confidence            8899999999999988765543321                                                       


Q ss_pred             ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc---CEEEEEEe
Q 011978          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG---PVYQISWS  411 (473)
Q Consensus       335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~---~v~~v~~s  411 (473)
                                       ......+|...|.+++|+|++++|++|+.||.|+|||+++++++..+..|..   .+.++.  
T Consensus       230 -----------------~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~--  290 (311)
T d1nr0a1         230 -----------------DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII--  290 (311)
T ss_dssp             -----------------TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE--
T ss_pred             -----------------cccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEE--
Confidence                             0112346888899999999999999999999999999999999999887643   444444  


Q ss_pred             cCCCEEEEEeCCCcEEEEECC
Q 011978          412 ADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       412 p~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      +++.+|++++.||.|++||.+
T Consensus       291 ~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         291 WTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ECSSCEEEEETTCCEEEEETT
T ss_pred             ecCCEEEEEECCCEEEEEeCC
Confidence            456689999999999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-36  Score=282.16  Aligned_cols=295  Identities=21%  Similarity=0.302  Sum_probs=219.8

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce------eEEEcCCCCCEEEEEE------CC-CCCeEEEEe
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP------MFKCTGHKNWVLCIAW------SA-DGKHLVSGS  169 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~------~~~~~~~~~~v~~l~~------s~-dg~~l~s~~  169 (473)
                      ..+||.+.|.++++++  ++++|||.|++|+|||..+...      ......|...+..+..      +. ++..+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            3478999999999875  6899999999999999765431      2233345555443332      11 234678999


Q ss_pred             cCCeEEEeeCCCCccccc---------cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe---------
Q 011978          170 KAGELQCWDPQTGKPSGN---------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---------  231 (473)
Q Consensus       170 ~dg~i~iwd~~~~~~~~~---------~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~---------  231 (473)
                      .||.|++|+.........         ....+...+..+.|.+......+.++++++.||++++||+....         
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            999999998754432110         11234455667777665544556789999999999999974210         


Q ss_pred             ---------EEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978          232 ---------CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       232 ---------~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                               .......+...+.+++|++++.+++|+.|++|++||+.+++.+..+..                       
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~-----------------------  223 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFES-----------------------  223 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEEC-----------------------
T ss_pred             eccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccccccccc-----------------------
Confidence                     111123455668899999999999999999999999998876554321                       


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~  382 (473)
                                                                        ...+.+|...|++++|+|+|++|++|+.|+
T Consensus       224 --------------------------------------------------~~~l~~h~~~V~~l~~spdg~~l~sgs~D~  253 (393)
T d1sq9a_         224 --------------------------------------------------QHSMINNSNSIRSVKFSPQGSLLAIAHDSN  253 (393)
T ss_dssp             --------------------------------------------------CC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred             --------------------------------------------------ccccccccceEEEcccccccceeeeecCCC
Confidence                                                              112346888999999999999999999997


Q ss_pred             c---EEEEeCCCCceEEEee-------------CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC
Q 011978          383 S---IKLWNGTTGKFVAVFR-------------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE  446 (473)
Q Consensus       383 ~---v~lwd~~~~~~~~~~~-------------~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~  446 (473)
                      +   |++||+++++++..+.             +|.+.|++++|+||+++|+|+|.|++|++||+.+++.+.++.+|.+.
T Consensus       254 t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~  333 (393)
T d1sq9a_         254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD  333 (393)
T ss_dssp             TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG
T ss_pred             CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCc
Confidence            5   8999999998877664             79999999999999999999999999999999999999988888643


Q ss_pred             ---------------------EEEEEEeeCC----------CEEEEEeCCCcEEecc
Q 011978          447 ---------------------VFAVDWSPDG----------EKVASGGKDRVLKLWM  472 (473)
Q Consensus       447 ---------------------i~~l~~s~d~----------~~l~s~~~D~~i~~w~  472 (473)
                                           +.++.|.+++          +.|++++.|+.|++|.
T Consensus       334 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         334 IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             CSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             ccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence                                 4556665543          4588899999999885

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=273.21  Aligned_cols=281  Identities=22%  Similarity=0.326  Sum_probs=223.6

Q ss_pred             cEEEEEECCCCCeEEEEeCCC-eEEEEeCCCC--ceeEEEcCCC-CCEEEEEECC--CCCeEEEEecCCeEEEeeCCCCc
Q 011978          110 AVLSVAFSPDGRQLASGSGDT-TVRLWDLNTQ--TPMFKCTGHK-NWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~-~i~iwd~~~~--~~~~~~~~~~-~~v~~l~~s~--dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      .+.+++|+|+++.||.++.+. .|+.||....  .....+.+|. ..|++++|+|  +|.+|++|+.||+|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            356889999999999887664 4677775433  3455677774 6799999998  57899999999999999987654


Q ss_pred             ccc-------ccCCCcCCcEEEEEeceeccCCCCceEEEee--CCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--
Q 011978          184 PSG-------NPLSGHKKWITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--  252 (473)
Q Consensus       184 ~~~-------~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--  252 (473)
                      ...       .....|...|.++.|++     ++.++++++  .++.+++|+..+++++..+.+|...|.+++|++++  
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDF-----EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECT-----TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             ceeeeecccccccccccCcEEEEEECC-----CCCccceeeccccceEEEEeecccccceeeeecccccccccccccccc
Confidence            322       12346778899999876     445666655  46789999999999999999999999999999876  


Q ss_pred             eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                      .+++++.|+.+++||...++......                                                      
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~------------------------------------------------------  199 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDR------------------------------------------------------  199 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEEC------------------------------------------------------
T ss_pred             eEEEeecccccccccccccccceecc------------------------------------------------------
Confidence            47789999999999987654332211                                                      


Q ss_pred             EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS  411 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s  411 (473)
                                            ...+|...|.+++|+|+ +.+|++|+.|+.|++||.++++.+..+++|..++.++.|+
T Consensus       200 ----------------------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s  257 (325)
T d1pgua1         200 ----------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA  257 (325)
T ss_dssp             ----------------------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred             ----------------------cccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceee
Confidence                                  11245567899999996 6899999999999999999999999999998887776666


Q ss_pred             ---cCCCEEEEEeCCCcEEEEECCCCceeecccccCCC----EEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          412 ---ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE----VFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       412 ---p~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~----i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                         |||++|++++.|+.|+|||+++++.+..+..|...    ..++.|.++ .+|+++|.|++|++|+
T Consensus       258 ~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEE
T ss_pred             eeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEE
Confidence               78999999999999999999999887766555432    335555554 4789999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-35  Score=270.36  Aligned_cols=240  Identities=20%  Similarity=0.321  Sum_probs=209.5

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~  181 (473)
                      ..+|.+.|.+++|+|++++|++|+.|++|++||+....  ....+..|...+.+++|+|++.++++++.|+.|++|++.+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46899999999999999999999999999999987543  3456678999999999999999999999999999999998


Q ss_pred             CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecC
Q 011978          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (473)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d  260 (473)
                      ++... ...+|...+.++.|++     ++..+++++.|+.+++||+++++.+..+ .|...|.+++|++++ .+++++.|
T Consensus       173 ~~~~~-~~~~~~~~v~~l~~s~-----~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d  245 (337)
T d1gxra_         173 QTLVR-QFQGHTDGASCIDISN-----DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             TEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccc-cccccccccccccccc-----cccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccc
Confidence            87543 4667889999999876     4568999999999999999999887765 477899999999887 58889999


Q ss_pred             CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      +.+++||+.+++...                                                                 
T Consensus       246 ~~i~i~d~~~~~~~~-----------------------------------------------------------------  260 (337)
T d1gxra_         246 SNVEVLHVNKPDKYQ-----------------------------------------------------------------  260 (337)
T ss_dssp             SCEEEEETTSSCEEE-----------------------------------------------------------------
T ss_pred             ccccccccccccccc-----------------------------------------------------------------
Confidence            999999987654321                                                                 


Q ss_pred             EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~  420 (473)
                                     ...|...|++++|+|++++|++|+.|+.|++||..+++.+..+. |.+.|.+++|+|++++|++|
T Consensus       261 ---------------~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~  324 (337)
T d1gxra_         261 ---------------LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             ---------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEE
T ss_pred             ---------------ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEE
Confidence                           12355678999999999999999999999999999999887765 77899999999999999999


Q ss_pred             eCCCcEEEEEC
Q 011978          421 SKDSTLKVWDI  431 (473)
Q Consensus       421 s~Dg~i~iwd~  431 (473)
                      +.||+|+|||+
T Consensus       325 s~D~~I~vWdl  335 (337)
T d1gxra_         325 SGDKKATVYEV  335 (337)
T ss_dssp             ETTSCEEEEEE
T ss_pred             eCCCeEEEEEE
Confidence            99999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.4e-35  Score=275.35  Aligned_cols=241  Identities=20%  Similarity=0.292  Sum_probs=202.1

Q ss_pred             CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (473)
Q Consensus       150 ~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~  228 (473)
                      ..+|+|++|+|||++||+|+.||.|++||..+++. ....+.+|...|.++.|+|     ++.++++++.|++|++||+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-----~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-----DSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-----TTTEEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-----CCCEEEEEECCCeEEEEeec
Confidence            46799999999999999999999999999987753 2345689999999999987     45689999999999999998


Q ss_pred             CCeE--EEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCc
Q 011978          229 LRKC--VICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (473)
Q Consensus       229 ~~~~--~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (473)
                      .+..  ...+.+|...|.+++|++++ .+++++.|+++++|++.........                            
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~----------------------------  133 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC----------------------------  133 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE----------------------------
T ss_pred             ccccccccccccccccccccccccccccceeecccCcceeeeeecccccccc----------------------------
Confidence            7654  45567899999999999987 5889999999999987543221110                            


Q ss_pred             ccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEE
Q 011978          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (473)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~  385 (473)
                                                                     ......|...|.+++|+|++++||+|+.|++|+
T Consensus       134 -----------------------------------------------~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_         134 -----------------------------------------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             -----------------------------------------------EEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             -----------------------------------------------cccccccccccccccccccccceeccccCcEEE
Confidence                                                           011234567799999999999999999999999


Q ss_pred             EEeCCCC------------------ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCE
Q 011978          386 LWNGTTG------------------KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV  447 (473)
Q Consensus       386 lwd~~~~------------------~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i  447 (473)
                      +||....                  +.+....+|.+.|.+++|+|+|++|++++.|+.|++||+..++.+..+.+|..+|
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  246 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL  246 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCE
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccc
Confidence            9997542                  3456677899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEec
Q 011978          448 FAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       448 ~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      .+++|+||+++|++|. |+.+++|
T Consensus       247 ~s~~fs~d~~~la~g~-d~~~~~~  269 (371)
T d1k8kc_         247 LAVTFITESSLVAAGH-DCFPVLF  269 (371)
T ss_dssp             EEEEEEETTEEEEEET-TSSCEEE
T ss_pred             eeeeecCCCCEEEEEc-CCceEEE
Confidence            9999999998877655 6766665

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-34  Score=256.49  Aligned_cols=271  Identities=28%  Similarity=0.517  Sum_probs=216.7

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      ..+|...|+|++|  ||++||||+.||+|+|||+.+++++..+.+|..+|.+++|  ++++|++|+.|+.|++|++..+.
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            3578899999765  7999999999999999999999999999999999999987  57899999999999999998876


Q ss_pred             cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe---EEEEecCccccEEEEEecCCCeEEEeecC
Q 011978          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAVTCVKWGGDGVIYTGSQD  260 (473)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~l~s~~~d  260 (473)
                      ....... +........       .....++++..++.+++||.....   ....+..|...+.+..+..+ .+++++.|
T Consensus        87 ~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d  157 (293)
T d1p22a2          87 MLNTLIH-HCEAVLHLR-------FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGD  157 (293)
T ss_dssp             EEEEECC-CCSCEEEEE-------CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT-EEEEEETT
T ss_pred             ccccccc-ccccccccc-------ccccceeecccccceeEeeccccccccccccccccccccccceeccc-ccccccCC
Confidence            5432222 222222111       133578899999999999987654   34556788888888887654 57788999


Q ss_pred             CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (473)
Q Consensus       261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  340 (473)
                      +.+++||.++++.+..+.++                                                            
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~------------------------------------------------------------  177 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGH------------------------------------------------------------  177 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECC------------------------------------------------------------
T ss_pred             CceeeecCCCCcEEEEEccc------------------------------------------------------------
Confidence            99999999887765544332                                                            


Q ss_pred             EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~  420 (473)
                                         ...+..+.+  ++.++++++.|+.|++||+++++.+..+.+|...+..  +++++.+|+++
T Consensus       178 -------------------~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg  234 (293)
T d1p22a2         178 -------------------KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSG  234 (293)
T ss_dssp             -------------------SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEE
T ss_pred             -------------------ccccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEE
Confidence                               122333334  4678999999999999999999999999999988875  56788999999


Q ss_pred             eCCCcEEEEECCC---------CceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          421 SKDSTLKVWDIRT---------QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       421 s~Dg~i~iwd~~~---------~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +.||.|++||+..         ......+.+|.+.|++++|  |+++|+|+|.|++|+||+
T Consensus       235 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             cCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            9999999999753         2345678899999999988  467899999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-34  Score=271.19  Aligned_cols=256  Identities=25%  Similarity=0.472  Sum_probs=207.2

Q ss_pred             ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (473)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~  183 (473)
                      ..+|...|.+++|+|++++|++|+.||.|++||...++......+|...|.+++|++++..+++++.++.+++||..+..
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  196 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  196 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc
Confidence            35688899999999999999999999999999999999888899999999999999999999999999999999998776


Q ss_pred             cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-------cCccccEEEEEecCCC-eEE
Q 011978          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------SGHTLAVTCVKWGGDG-VIY  255 (473)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~-~l~  255 (473)
                      ....  ..+......+.+.+    .++..+++++.|+.+++||..++.....+       .+|...|.+++|++++ .|+
T Consensus       197 ~~~~--~~~~~~~~~~~~~~----~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  270 (388)
T d1erja_         197 CSLT--LSIEDGVTTVAVSP----GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  270 (388)
T ss_dssp             EEEE--EECSSCEEEEEECS----TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             cccc--cccccccccccccC----CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE
Confidence            4432  22334455555544    24568999999999999999988776554       4688899999999987 588


Q ss_pred             EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                      +++.|+.|++||+.++..........                                                      
T Consensus       271 s~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------------  296 (388)
T d1erja_         271 SGSLDRSVKLWNLQNANNKSDSKTPN------------------------------------------------------  296 (388)
T ss_dssp             EEETTSEEEEEEC-------------------------------------------------------------------
T ss_pred             EEECCCcEEEEeccCCcccccccccc------------------------------------------------------
Confidence            99999999999988765432211000                                                      


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE-----
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW-----  410 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~-----  410 (473)
                                   ..........|...|.+++|+|++++|++|+.||.|++||+++++++..+++|.+.|.++++     
T Consensus       297 -------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~  363 (388)
T d1erja_         297 -------------SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS  363 (388)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCT
T ss_pred             -------------ccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcc
Confidence                         00111223456778999999999999999999999999999999999999999999999975     


Q ss_pred             -ecCCCEEEEEeCCCcEEEEECC
Q 011978          411 -SADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       411 -sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                       +|++++||+|+.||+|+|||++
T Consensus       364 ~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         364 LGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCEEEEEeee
Confidence             5789999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9e-34  Score=258.20  Aligned_cols=275  Identities=25%  Similarity=0.494  Sum_probs=230.5

Q ss_pred             eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE
Q 011978           91 VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG  168 (473)
Q Consensus        91 ~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~  168 (473)
                      .++++..  ..+..++.+|.+.|.+++|+|++.++++++.++.+.+|+.........+.+|...+.++.|+|+++.++++
T Consensus        40 ~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (317)
T d1vyhc1          40 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA  119 (317)
T ss_dssp             CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEee
Confidence            3445532  45667789999999999999999999999999999999998888777788899999999999999999999


Q ss_pred             ecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEe
Q 011978          169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW  248 (473)
Q Consensus       169 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  248 (473)
                      +.|+.+++||+++++... .+.+|...+..+.|.|     ++..+++++.|+.+++|++..++....+.+|...+.++.|
T Consensus       120 ~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  193 (317)
T d1vyhc1         120 SRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQ-----DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW  193 (317)
T ss_dssp             ETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             ccCcceeEeecccceeee-EEccCCCcceeeeccc-----CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEE
Confidence            999999999999887543 4678888999998876     4578999999999999999999999999999999999999


Q ss_pred             cCCCeEEE-eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCC
Q 011978          249 GGDGVIYT-GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (473)
Q Consensus       249 ~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (473)
                      .+++.... ....+....+..                                                          .
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------~  215 (317)
T d1vyhc1         194 APESSYSSISEATGSETKKSG----------------------------------------------------------K  215 (317)
T ss_dssp             CCSCGGGGGGGCCSCC----------------------------------------------------------------
T ss_pred             eeccccceeeccccceeeeec----------------------------------------------------------c
Confidence            87653111 111111100000                                                          0


Q ss_pred             CCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE
Q 011978          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (473)
Q Consensus       328 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~  407 (473)
                      ....+++++.|+.+++|+.... .....+.+|...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.++|++
T Consensus       216 ~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~  294 (317)
T d1vyhc1         216 PGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS  294 (317)
T ss_dssp             -CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred             CCceeEeccCCCEEEEEECCCC-cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence            1235778888999999987644 344566788999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEE
Q 011978          408 ISWSADSRLLLSGSKDSTLKVWD  430 (473)
Q Consensus       408 v~~sp~g~~l~s~s~Dg~i~iwd  430 (473)
                      ++|+|++++|++|+.||+|+|||
T Consensus       295 ~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         295 LDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-34  Score=260.32  Aligned_cols=269  Identities=17%  Similarity=0.284  Sum_probs=216.4

Q ss_pred             ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC
Q 011978          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (473)
Q Consensus       141 ~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg  220 (473)
                      +++..+.+|..+|.+|+|+|    |++|+.||+|++||+.++      ..+|...|.++.+.+      ...+++++.|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~------~~~h~~~V~~~~~~~------~~~~~s~s~D~   67 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM------HQDHSNLIVSLDNSK------AQEYSSISWDD   67 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE------ECCCCSCEEEEECCS------TTCCEEEETTT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC------CCCCCCCEEEEEecC------CCeEEEEeecc
Confidence            56778899999999999987    999999999999998764      357889999998764      34689999999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (473)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (473)
                      ++++|++...+       ....+.++.+.+++.++..+.++.+.+|+..+++.+..+..+.. +.++...          
T Consensus        68 ~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------  129 (287)
T d1pgua2          68 TLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP-GSAVSLS----------  129 (287)
T ss_dssp             EEEETTEEEEE-------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC-EEEEEEC----------
T ss_pred             ccccccccccc-------cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccce-eeeeecc----------
Confidence            99999875432       23456778888899888888888999999999888777654432 2222211          


Q ss_pred             cCCCcccCCHHHHHHHHHhhhhcccCCCCceEE-EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE
Q 011978          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (473)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs  379 (473)
                                                  ...++ ++.+++.+++|+.............|...+++++|+|++.+|++|+
T Consensus       130 ----------------------------~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  181 (287)
T d1pgua2         130 ----------------------------QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD  181 (287)
T ss_dssp             ----------------------------SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ----------------------------CcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc
Confidence                                        12344 4445568999997544333333445777899999999999999999


Q ss_pred             CCCcEEEEeCCCCceEE-EeeCCccCEEEEEEecC----------CCEEEEEeCCCcEEEEECCC-CceeecccccCCCE
Q 011978          380 FDKSIKLWNGTTGKFVA-VFRGHVGPVYQISWSAD----------SRLLLSGSKDSTLKVWDIRT-QKLKQDLPGHADEV  447 (473)
Q Consensus       380 ~d~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp~----------g~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~h~~~i  447 (473)
                      .||.|++||..+++... .+.+|.++|.+++|+|+          +.+|++|+.|++|+|||++. .+....+.+|...|
T Consensus       182 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V  261 (287)
T d1pgua2         182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV  261 (287)
T ss_dssp             TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred             ccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCe
Confidence            99999999999987654 46789999999999875          46899999999999999976 55677788999999


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          448 FAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       448 ~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +++.|+|++ .|+|+|.|++|++|+
T Consensus       262 ~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         262 NNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             EEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             EEEEECCCC-EEEEEECCCeEEEEE
Confidence            999999986 689999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=259.86  Aligned_cols=290  Identities=13%  Similarity=0.113  Sum_probs=205.3

Q ss_pred             cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee---EEEcCCCCCEEEEEECCCC-CeEEEEecCCeEEE
Q 011978          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQC  176 (473)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~---~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~i~i  176 (473)
                      +..+.+|.+.|++|+|+|++++||+|+.||+|+|||+.++.+.   ....+|..+|.+++|+|++ .+|++|+.||.|++
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            3456789999999999999999999999999999999765432   2334799999999999864 57899999999999


Q ss_pred             eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe----EEEEecCccc--cEEEEEecC
Q 011978          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTL--AVTCVKWGG  250 (473)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~----~~~~~~~h~~--~v~~~~~~~  250 (473)
                      |+...+.........+........+.+     ....+++++.++++++||++...    .......+..  ......+..
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKY-----GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEE-----TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             eeccccccccccccccccccccccccc-----ccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence            999877654433333333333332222     34578999999999999986432    2222222221  122233332


Q ss_pred             -CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978          251 -DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (473)
Q Consensus       251 -~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (473)
                       ...+++++.|+.|++||+..++......                                                   
T Consensus       159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---------------------------------------------------  187 (342)
T d1yfqa_         159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTI---------------------------------------------------  187 (342)
T ss_dssp             CSSEEEEEESTTEEEEEESSCCTTCCCEE---------------------------------------------------
T ss_pred             cCCceeeecCCCcEEEEecccCcccceee---------------------------------------------------
Confidence             3367788888888888876543321110                                                   


Q ss_pred             ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEE-CCCCcEEEEEECCCcEEEEeCCCCce---------EE---
Q 011978          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF-SPDGQWVASASFDKSIKLWNGTTGKF---------VA---  396 (473)
Q Consensus       330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~-sp~g~~lasgs~d~~v~lwd~~~~~~---------~~---  396 (473)
                                               ....+...+.+.++ ++++..+++++.||.+.+|+......         ..   
T Consensus       188 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T d1yfqa_         188 -------------------------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             -------------------------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             -------------------------eecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeee
Confidence                                     00111122333333 45678999999999999998754321         11   


Q ss_pred             ---EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          397 ---VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       397 ---~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                         ...+|...|++++|+|++++||+|+.||.|++||+.+++.+..+..+. .+..++|+|+++.|++++.|+.+++|.
T Consensus       243 ~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             eccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence               123567789999999999999999999999999999998888776443 445678899999999999999887775

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.5e-33  Score=250.55  Aligned_cols=269  Identities=18%  Similarity=0.239  Sum_probs=210.4

Q ss_pred             ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (473)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~  179 (473)
                      ..+++.||.++|++++|+|    |+||+.||+|++||+.++     ..+|...|.+++|+++ ..+++++.|+++++|+.
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTE
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeeccccccccc
Confidence            3557899999999999998    999999999999998753     3579999999999876 56899999999999997


Q ss_pred             CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeec
Q 011978          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (473)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~  259 (473)
                      ...+        ....+..+.+.+     + ..++..+.++.+.+|+...++.+..+..+ ..+.++..+++ .++.++.
T Consensus        75 ~~~~--------~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~v~~~  138 (287)
T d1pgua2          75 TKHE--------FGSQPKVASANN-----D-GFTAVLTNDDDLLILQSFTGDIIKSVRLN-SPGSAVSLSQN-YVAVGLE  138 (287)
T ss_dssp             EEEE--------CSSCEEEEEECS-----S-SEEEEEETTSEEEEEETTTCCEEEEEECS-SCEEEEEECSS-EEEEEET
T ss_pred             cccc--------cccceeeeeecc-----C-CceEEEeecccceeeeccceeeeeecccc-ceeeeeeccCc-ceeeecc
Confidence            5432        122344444433     2 34555667778999999998888776544 34455554433 4555555


Q ss_pred             -CCeEEEEECCCCceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          260 -DCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       260 -d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                       ++.+++|++.+.+....+. .+...+.+++++++                                    ...+++++.
T Consensus       139 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------------------------~~~l~~g~~  182 (287)
T d1pgua2         139 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS------------------------------------ETYIAAGDV  182 (287)
T ss_dssp             TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT------------------------------------SSEEEEEET
T ss_pred             ccceeeeeeccccceeeeeeeccCCceeEEEeccC------------------------------------ccccccccc
Confidence             4689999988766555543 36677888888765                                    235899999


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCC----------CcEEEEEECCCcEEEEeCCC-CceEEEeeCCccCEE
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD----------GQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVY  406 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~----------g~~lasgs~d~~v~lwd~~~-~~~~~~~~~h~~~v~  406 (473)
                      |+.+++||..........+.+|...|.+++|+|+          +.+||+|+.|++|++||+++ ++.+..+.+|.+.|+
T Consensus       183 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~  262 (287)
T d1pgua2         183 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN  262 (287)
T ss_dssp             TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEE
T ss_pred             cccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeE
Confidence            9999999987665555567789999999999875          46899999999999999876 567778889999999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEC
Q 011978          407 QISWSADSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       407 ~v~~sp~g~~l~s~s~Dg~i~iwd~  431 (473)
                      +++|+|++ .|++++.|++|++||+
T Consensus       263 ~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         263 NLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EEEECCCC-EEEEEECCCeEEEEEE
Confidence            99999986 5889999999999986

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.6e-32  Score=244.10  Aligned_cols=242  Identities=19%  Similarity=0.228  Sum_probs=183.3

Q ss_pred             eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (473)
Q Consensus       142 ~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~  221 (473)
                      ....+.||...|++++|+|||++|++|+.||+|++||+++++.......                               
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-------------------------------   52 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-------------------------------   52 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC-------------------------------
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-------------------------------
Confidence            4456789999999999999999999999999999999887764332222                               


Q ss_pred             EEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCcee---eeeeccCceEEEEEecccceeeec
Q 011978          222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI---RELKGHGHWVNSLALSTEYALRTG  298 (473)
Q Consensus       222 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~  298 (473)
                                      +|...|++++|++++.+++++.|+.+++|+.......   .....+...+..++++++.     
T Consensus        53 ----------------~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-----  111 (299)
T d1nr0a2          53 ----------------VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-----  111 (299)
T ss_dssp             ----------------SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-----
T ss_pred             ----------------CCCCcEEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccccccccccc-----
Confidence                            3555666777777777777777777777776543211   1122334445555554431     


Q ss_pred             cccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE
Q 011978          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA  378 (473)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg  378 (473)
                                                      .++.++.++.+.+|+...   .....  ....+.+++|+|++++|++|
T Consensus       112 --------------------------------~~~~~~~~~~i~~~~~~~---~~~~~--~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2         112 --------------------------------DIAVAACYKHIAIYSHGK---LTEVP--ISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             --------------------------------SCEEEEESSEEEEEETTE---EEEEE--CSSCEEEEEECTTSCEEEEE
T ss_pred             --------------------------------cccccccccccccccccc---ccccc--cccccccccccccccccccc
Confidence                                            233444567889998431   11122  23457889999999999999


Q ss_pred             ECCCcEEEEeCCCCceEE-EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee---ecccccCCCEEEEEEee
Q 011978          379 SFDKSIKLWNGTTGKFVA-VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK---QDLPGHADEVFAVDWSP  454 (473)
Q Consensus       379 s~d~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~---~~~~~h~~~i~~l~~s~  454 (473)
                      +.|+.|++||+++++... ....|...|++++|+|++++|++++.|+.|++||+.++...   ..+.+|...|++++|+|
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999998877544 34568999999999999999999999999999999876543   45677999999999999


Q ss_pred             CCCEEEEEeCCCcEEecc
Q 011978          455 DGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       455 d~~~l~s~~~D~~i~~w~  472 (473)
                      ++++|++|+.|+.|++|+
T Consensus       235 ~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             TSSEEEEEETTSCEEEEE
T ss_pred             cccceEEEcCCCEEEEEE
Confidence            999999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-32  Score=250.33  Aligned_cols=288  Identities=25%  Similarity=0.385  Sum_probs=224.0

Q ss_pred             EEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCC--CCCEEEEEECCCCCeEEE
Q 011978           92 FRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGKHLVS  167 (473)
Q Consensus        92 ~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~s~dg~~l~s  167 (473)
                      ++++..  .++..++.+|.++|.+++|+|+ .+|++|+.|++|++|++...........+  ........+++++..+++
T Consensus        35 i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (355)
T d1nexb2          35 IRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT  113 (355)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeee
Confidence            444433  3566778999999999999985 58999999999999999988766555433  334556778899999999


Q ss_pred             EecCCeEEEeeCCCCccccccC----------------------CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEE
Q 011978          168 GSKAGELQCWDPQTGKPSGNPL----------------------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (473)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~~----------------------~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iw  225 (473)
                      ++.|+.|++||+.++.......                      ..|...+....       ..+..++++..|+.+++|
T Consensus       114 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~d~~i~~~  186 (355)
T d1nexb2         114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-------GHGNIVVSGSYDNTLIVW  186 (355)
T ss_dssp             EETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEE-------EETTEEEEEETTSCEEEE
T ss_pred             ecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccc-------cccceeeeecccceeeee
Confidence            9999999999987754322111                      01111121111       134678999999999999


Q ss_pred             ECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCC
Q 011978          226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG  304 (473)
Q Consensus       226 d~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  304 (473)
                      |+.+++.+....++...+.++.+++++ .+++++.|++|++||.+++..+..+++|...|.++++++             
T Consensus       187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~-------------  253 (355)
T d1nexb2         187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-------------  253 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS-------------
T ss_pred             ecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc-------------
Confidence            999999999999999999999999876 688999999999999999999999999999888887653             


Q ss_pred             cccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEE-EECCCCcEEEEEECCCc
Q 011978          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKS  383 (473)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v-~~sp~g~~lasgs~d~~  383 (473)
                                               ..+++++.|+.|++||.....   ..+..|...+.++ ++++++++|++|+ |+.
T Consensus       254 -------------------------~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~  304 (355)
T d1nexb2         254 -------------------------KFLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSDNILVSGS-ENQ  304 (355)
T ss_dssp             -------------------------SEEEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECSSEEEEEE-TTE
T ss_pred             -------------------------ceeeeeecccccccccccccc---eecccccCCceEEEEEcCCCCEEEEEe-CCE
Confidence                                     358999999999999986543   3344555555554 5677888777765 889


Q ss_pred             EEEEeCCCCceEE-EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978          384 IKLWNGTTGKFVA-VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD  430 (473)
Q Consensus       384 v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd  430 (473)
                      |++||+++++++. .+.+|.++|.+++|+|+ .++++++.||+++||.
T Consensus       305 i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         305 FNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             EEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            9999999999875 56789999999999987 5788899999977664

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-31  Score=241.65  Aligned_cols=283  Identities=30%  Similarity=0.536  Sum_probs=223.9

Q ss_pred             EeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEE
Q 011978          135 WDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV  214 (473)
Q Consensus       135 wd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~  214 (473)
                      |+..+.++...+++|.+.|.+ +++++|++|+||+.||+|++||+.+++... .+.+|...|.++.|+|       ..++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~-~~~~h~~~V~~v~~~~-------~~l~   71 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR-TLVGHTGGVWSSQMRD-------NIII   71 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE-ECCCCSSCEEEEEEET-------TEEE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE-EEeCCCCCEEEEEeCC-------Cccc
Confidence            444555666778999999865 356679999999999999999999988654 5789999999999875       3799


Q ss_pred             EeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccce
Q 011978          215 SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA  294 (473)
Q Consensus       215 s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  294 (473)
                      +++.|+.+++|+............+...+......+ ..+..+..|+.+.+|+..+++....+............     
T Consensus        72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----  145 (342)
T d2ovrb2          72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-----  145 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-----
T ss_pred             cceecccccccccccccceecccccceeEeeeeccc-ccccccccceeEEEeecccccceeeeecccccceeecc-----
Confidence            999999999999999888877777777776665543 46778999999999999988776655443322221111     


Q ss_pred             eeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcE
Q 011978          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW  374 (473)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~  374 (473)
                                                       ....++.++.|+.+++||.... .....+.+|...+.  .+++++.+
T Consensus       146 ---------------------------------~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~--~~~~~~~~  189 (342)
T d2ovrb2         146 ---------------------------------DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVY--SLQFDGIH  189 (342)
T ss_dssp             ---------------------------------CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEE--EEEECSSE
T ss_pred             ---------------------------------ccceeeeecCCCeEEEeecccc-eeeEEEcCcccccc--cccCCCCE
Confidence                                             1235788999999999997543 23445566665554  45567899


Q ss_pred             EEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc---cCCCEEEEE
Q 011978          375 VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG---HADEVFAVD  451 (473)
Q Consensus       375 lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---h~~~i~~l~  451 (473)
                      |++|+.||.|++||++.++++..+.+|...+.++++++  ++|++++.||.|++||+...+....+.+   |...+.++.
T Consensus       190 l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  267 (342)
T d2ovrb2         190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ  267 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred             EEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecc
Confidence            99999999999999999999999999999999887765  6999999999999999988776655543   556677766


Q ss_pred             EeeCCCEEEEEeCCCcEEecc
Q 011978          452 WSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       452 ~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++  ++++++|+.||+|++|+
T Consensus       268 ~~--~~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         268 FN--KNFVITSSDDGTVKLWD  286 (342)
T ss_dssp             EC--SSEEEEEETTSEEEEEE
T ss_pred             cC--CCeeEEEcCCCEEEEEE
Confidence            65  57999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-32  Score=247.05  Aligned_cols=249  Identities=20%  Similarity=0.267  Sum_probs=194.9

Q ss_pred             cccccCC-cccEEEEEECC--CCCeEEEEeCCCeEEEEeCCCCcee--------EEEcCCCCCEEEEEECCCCCeEEEEe
Q 011978          101 SATIAGH-TEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQTPM--------FKCTGHKNWVLCIAWSADGKHLVSGS  169 (473)
Q Consensus       101 ~~~~~gh-~~~V~~~~~sp--~~~~lat~s~d~~i~iwd~~~~~~~--------~~~~~~~~~v~~l~~s~dg~~l~s~~  169 (473)
                      ...+.|| ...|++++|+|  +|++||+|+.||+|+|||+..+...        .....|.++|.+++|+++|++|++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            3456677 46899999998  5689999999999999998654321        12456889999999999999998776


Q ss_pred             c--CCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe---cCccccEE
Q 011978          170 K--AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVT  244 (473)
Q Consensus       170 ~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~  244 (473)
                      .  ++.+.+|++++++... .+.+|...|.++.|.|..    ...+++++.|+.+++||....+.....   .+|...|.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~----~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~  209 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLG-EVSGHSQRINACHLKQSR----PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR  209 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEE-ECCSCSSCEEEEEECSSS----SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred             ccccceEEEEeecccccce-eeeecccccccccccccc----cceEEEeecccccccccccccccceecccccCCCCccE
Confidence            4  6789999998887554 467899999999998742    235788999999999999887766554   46678899


Q ss_pred             EEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978          245 CVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (473)
Q Consensus       245 ~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (473)
                      +++|+|++  .+++++.|+.|++||.++++.+..+.+|...+                                      
T Consensus       210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v--------------------------------------  251 (325)
T d1pgua1         210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV--------------------------------------  251 (325)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC--------------------------------------
T ss_pred             Eeeeccccceeccccccccceeeeeecccccccccccccccc--------------------------------------
Confidence            99999863  68899999999999999888777665543211                                      


Q ss_pred             cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc
Q 011978          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV  402 (473)
Q Consensus       323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~  402 (473)
                                                           ...+.++++ |+|++|++++.|+.|+|||+++++++..+..|.
T Consensus       252 -------------------------------------~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         252 -------------------------------------QGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             -------------------------------------CSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             -------------------------------------ccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC
Confidence                                                 112333444 578999999999999999999999998887665


Q ss_pred             cC--EE--EEEEecCCCEEEEEeCCCcEEEEEC
Q 011978          403 GP--VY--QISWSADSRLLLSGSKDSTLKVWDI  431 (473)
Q Consensus       403 ~~--v~--~v~~sp~g~~l~s~s~Dg~i~iwd~  431 (473)
                      ..  +.  ++.|.++ .+|+++|.||+|++||+
T Consensus       294 ~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         294 QQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             CcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            43  33  4444443 47899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-30  Score=236.39  Aligned_cols=245  Identities=24%  Similarity=0.431  Sum_probs=204.3

Q ss_pred             eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (473)
Q Consensus       143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i  222 (473)
                      ...+++|.+.|.+|+|+|++++|++|+.||+|++||+.+++... .+..|...|.++.|.|     ++..+++++.|+.+
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~-~~~~~~~~v~~v~~~~-----~~~~l~~~~~d~~i  121 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAP-----SGNYVACGGLDNIC  121 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE-EEECSCSCEEEEEECT-----TSSEEEEEETTCCE
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE-EEecccccEEeeEeec-----cceeeeeeccccee
Confidence            45688999999999999999999999999999999999887654 4678999999999987     45789999999999


Q ss_pred             EEEECCCC----eEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeec
Q 011978          223 RIWDVSLR----KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG  298 (473)
Q Consensus       223 ~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  298 (473)
                      ++|+....    .....+.+|.....+.....+..+.....|.....+..........                      
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  179 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT----------------------  179 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEE----------------------
T ss_pred             ecccccccccccccceeccccccccccccccccccccccccccccccccccccccccc----------------------
Confidence            99997653    3455667777777766666666777777777777776544322111                      


Q ss_pred             cccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE
Q 011978          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA  378 (473)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg  378 (473)
                                                                               ...+...+....+.+.+.++++|
T Consensus       180 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         180 ---------------------------------------------------------FTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             ---------------------------------------------------------EECCSSCEEEEEECTTSSEEEEE
T ss_pred             ---------------------------------------------------------ccccceeEeeeccccccceeEEe
Confidence                                                                     11223456677888999999999


Q ss_pred             ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec--ccccCCCEEEEEEeeCC
Q 011978          379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD--LPGHADEVFAVDWSPDG  456 (473)
Q Consensus       379 s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~--~~~h~~~i~~l~~s~d~  456 (473)
                      +.|+.|++||+++++++..+.+|.+.|++++|+|++++|++|+.||.|++||+...+....  ...|...|.+++|+|++
T Consensus       203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
T d1tbga_         203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS
T ss_pred             ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999999999998766543  34566789999999999


Q ss_pred             CEEEEEeCCCcEEecc
Q 011978          457 EKVASGGKDRVLKLWM  472 (473)
Q Consensus       457 ~~l~s~~~D~~i~~w~  472 (473)
                      ++|++|+.|+.|++|+
T Consensus       283 ~~l~~g~~dg~i~iwd  298 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             CEEEEEETTSCEEEEE
T ss_pred             CEEEEEECCCEEEEEE
Confidence            9999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-29  Score=239.25  Aligned_cols=262  Identities=16%  Similarity=0.184  Sum_probs=181.1

Q ss_pred             EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc-----ccCCCcCCcEEEEEecee-cc-CCCCceEEEeeC
Q 011978          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-----NPLSGHKKWITGISWEPV-HL-NAPCRRFVSASK  218 (473)
Q Consensus       146 ~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~v~~i~~~~~-~~-~~~~~~~~s~s~  218 (473)
                      .++|...|.++++++  ++|++++.|++|++||..+.+...     .....|...+..+..... .. ......+++++.
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            468999999999875  699999999999999976654211     111223333332222111 11 112246778999


Q ss_pred             CCcEEEEECCCCeE---E--EEe-----cCccccEEEEEecCC------CeEEEeecCCeEEEEECCCCceee-eeeccC
Q 011978          219 DGDARIWDVSLRKC---V--ICL-----SGHTLAVTCVKWGGD------GVIYTGSQDCTIKVWETTQGKLIR-ELKGHG  281 (473)
Q Consensus       219 dg~i~iwd~~~~~~---~--~~~-----~~h~~~v~~~~~~~~------~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~  281 (473)
                      ||.+++|++.....   .  ...     ..+...+..++|..+      ..+++++.||++++|++....... ....+.
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            99999998754321   1  111     123445666777543      257889999999999975322100 000000


Q ss_pred             ceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccc
Q 011978          282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ  361 (473)
Q Consensus       282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  361 (473)
                      .                                                        ....+..      .......+..
T Consensus       168 ~--------------------------------------------------------~~~~~~~------~~~~~~~~~~  185 (393)
T d1sq9a_         168 S--------------------------------------------------------PTLELQG------TVESPMTPSQ  185 (393)
T ss_dssp             C--------------------------------------------------------CEEEEEE------EECCSSSSCC
T ss_pred             c--------------------------------------------------------cceeccc------ceecccCCCC
Confidence            0                                                        0000000      0011123445


Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe------eCCccCEEEEEEecCCCEEEEEeCCCc---EEEEECC
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF------RGHVGPVYQISWSADSRLLLSGSKDST---LKVWDIR  432 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~------~~h~~~v~~v~~sp~g~~l~s~s~Dg~---i~iwd~~  432 (473)
                      .+.+++|+|++ +||+|+.|++|++||+.+++++..+      .+|..+|++++|+|||++|++|+.|++   |++||+.
T Consensus       186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             cEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccc
Confidence            68899999998 8999999999999999999877654      468999999999999999999999975   8999999


Q ss_pred             CCceeecc-------------cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          433 TQKLKQDL-------------PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       433 ~~~~~~~~-------------~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +++.+..+             .+|.+.|++++|+||+++|+|+|.|++|+||+
T Consensus       265 ~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             cceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            88766554             48999999999999999999999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1.6e-30  Score=241.81  Aligned_cols=308  Identities=14%  Similarity=0.077  Sum_probs=231.3

Q ss_pred             EEEECC-CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC--eEEEeeCCCCccccccC
Q 011978          113 SVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSGNPL  189 (473)
Q Consensus       113 ~~~~sp-~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg--~i~iwd~~~~~~~~~~~  189 (473)
                      .-.||| ||+++|+++. |.|++||++++....  ..|...|.+++|+|||++|++++.+.  .|++||.++++..  .+
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~--~~   81 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE--KF   81 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEE--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE--EC
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEE--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE--Ee
Confidence            357999 9999999864 799999998876543  36999999999999999998877653  7999999887654  46


Q ss_pred             CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEE----------ee
Q 011978          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT----------GS  258 (473)
Q Consensus       190 ~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s----------~~  258 (473)
                      ..|...+.++.|+|     ++.++++++.++.+++|+..+++....+..|...+.+++|+++|. |+.          +.
T Consensus        82 ~~~~~~v~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          82 EENLGNVFAMGVDR-----NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             CCCCCSEEEEEECT-----TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             eCCCceEEeeeecc-----cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence            78899999999987     567999999999999999999999999999999999999999985 442          33


Q ss_pred             cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (473)
Q Consensus       259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  338 (473)
                      .++.+++||..+++... +..+...+..+.++++                                    ...|++++.+
T Consensus       157 ~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spd------------------------------------g~~l~~~s~~  199 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDAD------------------------------------SKNLYYLSYR  199 (360)
T ss_dssp             CEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTT------------------------------------SCEEEEEESC
T ss_pred             cccceeeeccccCceee-ecccccccccccccCC------------------------------------CCEEEEEeCC
Confidence            45679999998876544 3344555666666654                                    2357888889


Q ss_pred             ceEEEEeCCCCCCC------eeeecCcccceeEEEECCCCcEEEEEECCCc-----EEEEeCCCCceEEEeeCCccCEEE
Q 011978          339 FTMFLWEPAVSKQP------KTRMTGHQQLVNHVYFSPDGQWVASASFDKS-----IKLWNGTTGKFVAVFRGHVGPVYQ  407 (473)
Q Consensus       339 ~~i~iwd~~~~~~~------~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~-----v~lwd~~~~~~~~~~~~h~~~v~~  407 (473)
                      +.+.+|+.......      ......+...+..+.++|++..++++..+..     +..++...+.. ..+..+.+.+..
T Consensus       200 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  278 (360)
T d1k32a3         200 SLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILI  278 (360)
T ss_dssp             CCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEE
T ss_pred             CceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce-eEeeecCCCceE
Confidence            99999986432210      1112234444555677888887777655432     34444444443 333445555666


Q ss_pred             EEEecCC---CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          408 ISWSADS---RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       408 v~~sp~g---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +.+.+.+   .++++++.++.|++||+.+++..    .|.+.|.+++|||||++|++++.||.|++|.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d  342 (360)
T d1k32a3         279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFP  342 (360)
T ss_dssp             EECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEE
Confidence            6665544   46888999999999999887643    3445689999999999999999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.9e-27  Score=220.65  Aligned_cols=302  Identities=12%  Similarity=0.025  Sum_probs=205.5

Q ss_pred             cCCcccEEEEEECCCCCeEEEEeCC--CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978          105 AGHTEAVLSVAFSPDGRQLASGSGD--TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~s~d--~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~  182 (473)
                      .+|...|.+++|+|||++|++++.+  ..|++||+.++.. ..+..|...|.+++|+|||++|++++.++.+++|+..++
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceecccccccccccccc
Confidence            3799999999999999999887655  3799999988764 456789999999999999999999999999999999887


Q ss_pred             ccccccCCCcCCcEEEEEeceeccCCCCceEEE----------eeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC
Q 011978          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS----------ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG  252 (473)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s----------~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  252 (473)
                      +... .+..|...+.++.|+|     ++.+++.          +..++.+++||+.+++.... ..|...+.++.|+++|
T Consensus       118 ~~~~-~~~~~~~~~~~~~~sp-----dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg  190 (360)
T d1k32a3         118 KPTV-IERSREAMITDFTISD-----NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADS  190 (360)
T ss_dssp             CEEE-EEECSSSCCCCEEECT-----TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTS
T ss_pred             ceee-eeecccccccchhhcc-----ceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCCC
Confidence            7543 4566777788888877     4556664          34456799999998876544 4566778889999998


Q ss_pred             -eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978          253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (473)
Q Consensus       253 -~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (473)
                       .|++++.|+.+++||........   .....+..+........ ...+...+.                         .
T Consensus       191 ~~l~~~s~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~s~~~~-------------------------~  241 (360)
T d1k32a3         191 KNLYYLSYRSLDPSPDRVVLNFSF---EVVSKPFVIPLIPGSPN-PTKLVPRSM-------------------------T  241 (360)
T ss_dssp             CEEEEEESCCCCCEECSSSSCEEC---CSCBEEEEEESSTTCCC-GGGCCCGGG-------------------------S
T ss_pred             CEEEEEeCCCceEcccccccceee---ccccceEEEecccCccc-cceECCCcC-------------------------c
Confidence             58889999999999976543321   12222333333222100 000000000                         0


Q ss_pred             EEEecCC---ceEEEEeCCCCCCCeeeecCcccceeEEEECC---CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCE
Q 011978          332 LVSGSDD---FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV  405 (473)
Q Consensus       332 l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp---~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v  405 (473)
                      +.++..+   ...++|...........+..+...+..+.+.+   ++.++++++.++.+++||+.+++..    .|.+.|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v  317 (360)
T d1k32a3         242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNL  317 (360)
T ss_dssp             CCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEE
T ss_pred             ccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCc
Confidence            0000000   00112221111111222223333344444443   4457888889999999999987643    345679


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCE
Q 011978          406 YQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV  447 (473)
Q Consensus       406 ~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i  447 (473)
                      .+++|||||++|++++.||.|++||+..++...++..+..++
T Consensus       318 ~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         318 TDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             CEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence            999999999999999999999999999988777766554443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-25  Score=199.72  Aligned_cols=232  Identities=31%  Similarity=0.561  Sum_probs=189.9

Q ss_pred             CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEEC
Q 011978          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET  268 (473)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~  268 (473)
                      ...|...|.++.|       ++.++++|+.||+|++||+.+++++..+.+|...|++++|++ ..|++|+.|+.|++|++
T Consensus        11 ~~~~~~~V~c~~~-------d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          11 RSETSKGVYCLQY-------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CCSSCCCEEEEEC-------CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEES
T ss_pred             cCCCCCCEEEEEE-------cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeeccc-ceeeccccccccccccc
Confidence            4567788888765       346899999999999999999999999999999999999964 48999999999999999


Q ss_pred             CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCC
Q 011978          269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (473)
Q Consensus       269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  348 (473)
                      ..+........+.........                                      ....++++..++.+.+|+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~  124 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHLRF--------------------------------------NNGMMVTCSKDRSIAVWDMAS  124 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEEEC--------------------------------------CTTEEEEEETTSCEEEEECSS
T ss_pred             ccccccccccccccccccccc--------------------------------------cccceeecccccceeEeeccc
Confidence            988766555443332222111                                      133578899999999999765


Q ss_pred             CCCC--eeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcE
Q 011978          349 SKQP--KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTL  426 (473)
Q Consensus       349 ~~~~--~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i  426 (473)
                      ....  ......|...+..+.+.  ...+++++.|+.+++||..+++.+..+.+|...+..+.++  +.++++++.||.|
T Consensus       125 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i  200 (293)
T d1p22a2         125 PTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI  200 (293)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             cccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEE
Confidence            5433  23455677777776665  4578899999999999999999999999999999888775  5689999999999


Q ss_pred             EEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          427 KVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       427 ~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ++||+++.+.+....+|...+..  +++++++|++++.|+.|++|+
T Consensus       201 ~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd  244 (293)
T d1p22a2         201 RLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWD  244 (293)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEE
T ss_pred             EEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEE
Confidence            99999999988888888888765  567889999999999999995

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=3.5e-26  Score=217.64  Aligned_cols=310  Identities=14%  Similarity=0.022  Sum_probs=198.9

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc----cCCCcCCcEE
Q 011978          122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----PLSGHKKWIT  197 (473)
Q Consensus       122 ~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~  197 (473)
                      ++++++.||+|+|||+.+++.+..+..|. .+..++|||||++|++++.|+++++||+.+++....    ...+|...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            45778899999999999999988888764 589999999999999999999999999998864321    1223333333


Q ss_pred             EEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCcee
Q 011978          198 GISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLI  274 (473)
Q Consensus       198 ~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~  274 (473)
                      ++.|     ++++.++ +++..++.+++||..++.+.....+|...+....+.+++  ..+.++.|+...++.......+
T Consensus       113 s~~~-----spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         113 SKFK-----GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             CCST-----TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eeee-----cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            3333     3466665 556689999999999999988887776555444444433  2344555555444443322222


Q ss_pred             ee------------eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978          275 RE------------LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (473)
Q Consensus       275 ~~------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  342 (473)
                      ..            ...++..+..+.++++..                                   ..+++...+..+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------------------------------~~~~a~~~~~~~~  232 (426)
T d1hzua2         188 LLVNYKDIDNLTVTSIGAAPFLADGGWDSSHR-----------------------------------YFMTAANNSNKVA  232 (426)
T ss_dssp             EEEECSSSSSCEEEEEECCSSEEEEEECTTSC-----------------------------------EEEEEETTCSEEE
T ss_pred             EEEEeccccceeeEEeccCCccEeeeECCCCc-----------------------------------EEEeeeeccccee
Confidence            11            122333334444433311                                   1244455566677


Q ss_pred             EEeCCCCCCCeeee-cCcccceeEEEECCCCc-EE--EEEECCCcEEEEeCC-------CCceEEEeeCCccCEEEEEEe
Q 011978          343 LWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQ-WV--ASASFDKSIKLWNGT-------TGKFVAVFRGHVGPVYQISWS  411 (473)
Q Consensus       343 iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~g~-~l--asgs~d~~v~lwd~~-------~~~~~~~~~~h~~~v~~v~~s  411 (473)
                      +++........... ..+......+.+.+++. .+  ++.+.|+.+.+|+..       .++....+.+|...+..++|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~s  312 (426)
T d1hzua2         233 VIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH  312 (426)
T ss_dssp             EEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECC
T ss_pred             eeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcC
Confidence            77755432211111 11111112222222221 11  122345666666543       347788899999999999999


Q ss_pred             cCCCEEEE-------EeCCCcEEEEECCCCceeec---------ccccCCCEEEEEEeeCCCEEE-EE----eCCCcEEe
Q 011978          412 ADSRLLLS-------GSKDSTLKVWDIRTQKLKQD---------LPGHADEVFAVDWSPDGEKVA-SG----GKDRVLKL  470 (473)
Q Consensus       412 p~g~~l~s-------~s~Dg~i~iwd~~~~~~~~~---------~~~h~~~i~~l~~s~d~~~l~-s~----~~D~~i~~  470 (473)
                      |||++|++       ++.|++|+|||+.+++...+         +..|...|.++.|||||++++ |+    +.|+.|+|
T Consensus       313 Pdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v  392 (426)
T d1hzua2         313 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV  392 (426)
T ss_dssp             TTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEE
T ss_pred             CCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEE
Confidence            99999994       55688999999998765433         334567899999999999774 32    46888999


Q ss_pred             cc
Q 011978          471 WM  472 (473)
Q Consensus       471 w~  472 (473)
                      |+
T Consensus       393 ~D  394 (426)
T d1hzua2         393 VD  394 (426)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.6e-26  Score=211.88  Aligned_cols=252  Identities=12%  Similarity=0.023  Sum_probs=182.7

Q ss_pred             EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc--cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (473)
Q Consensus       145 ~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i  222 (473)
                      ...+|++.|++|+|+|++++|++|+.||+|++||++++.....  ...+|...|.+++|.|.    ....+++|+.|+.|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~----~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN----TDLQIYVGTVQGEI   81 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES----SSEEEEEEETTSCE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC----CCCEEEEcccccce
Confidence            3568999999999999999999999999999999876543222  23469999999999873    24579999999999


Q ss_pred             EEEECCCCeEEEEecCccccE-EEEE-ecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978          223 RIWDVSLRKCVICLSGHTLAV-TCVK-WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (473)
Q Consensus       223 ~iwd~~~~~~~~~~~~h~~~v-~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (473)
                      ++|++...........+.... .... ...+..+++++.|+++++||++++........+.                   
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~-------------------  142 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-------------------  142 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-------------------
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccc-------------------
Confidence            999998877666655444332 2222 3345578899999999999976543322111000                   


Q ss_pred             cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC
Q 011978          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (473)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~  380 (473)
                                                                    ..        ...........+.+++..+++++.
T Consensus       143 ----------------------------------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~  168 (342)
T d1yfqa_         143 ----------------------------------------------NS--------NNTKVKNKIFTMDTNSSRLIVGMN  168 (342)
T ss_dssp             ----------------------------------------------CS--------SSSSSCCCEEEEEECSSEEEEEES
T ss_pred             ----------------------------------------------cc--------ccccceeeeeeeeccCCceeeecC
Confidence                                                          00        000112334567778899999999


Q ss_pred             CCcEEEEeCCCCceE---EEeeCCccCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCce---------------eeccc
Q 011978          381 DKSIKLWNGTTGKFV---AVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIRTQKL---------------KQDLP  441 (473)
Q Consensus       381 d~~v~lwd~~~~~~~---~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~i~iwd~~~~~~---------------~~~~~  441 (473)
                      |+.|++||+...+..   .....+...+.+..+.+ ++..+++++.||.+.+|+......               .....
T Consensus       169 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
T d1yfqa_         169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT  248 (342)
T ss_dssp             TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred             CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCC
Confidence            999999999876532   22334445566666554 678999999999999999764321               11224


Q ss_pred             ccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978          442 GHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       442 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      +|...|++++|+|++++||||+.||+|++|+.
T Consensus       249 ~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             SSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             cccccceeEEecCCccEEEEECCCCEEEEEEC
Confidence            56678999999999999999999999999963

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=4.8e-26  Score=216.66  Aligned_cols=333  Identities=13%  Similarity=0.077  Sum_probs=213.6

Q ss_pred             EeceeEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE--E---cCCCCCEEEEEEC
Q 011978           87 QPQAVFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--C---TGHKNWVLCIAWS  159 (473)
Q Consensus        87 ~~~~~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~--~---~~~~~~v~~l~~s  159 (473)
                      .....++++..  .++..++.+| ..+..++|||||++|++++.|++|++||+.++++...  +   .+|.+.+.+++|+
T Consensus        39 ~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~s  117 (426)
T d1hzua2          39 RDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG  117 (426)
T ss_dssp             TTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT
T ss_pred             cCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeec
Confidence            33444455443  2345566666 4689999999999999999999999999998865432  2   3566667788899


Q ss_pred             CCCCeEEEE-ecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceec------cCCCCceE-EEeeCCCcEEEEECCCCe
Q 011978          160 ADGKHLVSG-SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH------LNAPCRRF-VSASKDGDARIWDVSLRK  231 (473)
Q Consensus       160 ~dg~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~------~~~~~~~~-~s~s~dg~i~iwd~~~~~  231 (473)
                      |||++|+++ ..++.+.+||..++..... ...|...+....+.+..      ...++..+ .+....+.+.+++.....
T Consensus       118 pDG~~l~v~~~~~~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~  196 (426)
T d1hzua2         118 YEDRYTIAGAYWPPQFAIMDGETLEPKQI-VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  196 (426)
T ss_dssp             CTTTEEEEEEEESSEEEEEETTTCCEEEE-EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS
T ss_pred             CCCCEEEEeecCCCeEEEEcCCccceeEE-eeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc
Confidence            999987654 5789999999988765431 22222222111111100      01111222 222233444444443332


Q ss_pred             E-EEEecCccccEEEEEecCCCe-EE-EeecCCeEEEEECCCCceeeeeeccCce--EEEEEecccceeeeccccCCCcc
Q 011978          232 C-VICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKGHGHW--VNSLALSTEYALRTGAFDHTGKQ  306 (473)
Q Consensus       232 ~-~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~  306 (473)
                      . .....++...+..+.+++++. ++ +...+..+.+++..+++.+.........  .....+...              
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  262 (426)
T d1hzua2         197 NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP--------------  262 (426)
T ss_dssp             SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEET--------------
T ss_pred             ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecC--------------
Confidence            1 122335566778899998873 44 4556778999999998877665432111  000000000              


Q ss_pred             cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCC------CCeeeecCcccceeEEEECCCCcEEEE---
Q 011978          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK------QPKTRMTGHQQLVNHVYFSPDGQWVAS---  377 (473)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~v~~sp~g~~las---  377 (473)
                                         .......+..+.|+.+.+|+.....      .....+.+|...+..++|+||+++|++   
T Consensus       263 -------------------~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~  323 (426)
T d1hzua2         263 -------------------KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT  323 (426)
T ss_dssp             -------------------TTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCT
T ss_pred             -------------------CCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeec
Confidence                               0001123455667888888754332      234567789999999999999999994   


Q ss_pred             ----EECCCcEEEEeCCCCceEEEe---------eCCccCEEEEEEecCCCEEEE-E----eCCCcEEEEECCCCceeec
Q 011978          378 ----ASFDKSIKLWNGTTGKFVAVF---------RGHVGPVYQISWSADSRLLLS-G----SKDSTLKVWDIRTQKLKQD  439 (473)
Q Consensus       378 ----gs~d~~v~lwd~~~~~~~~~~---------~~h~~~v~~v~~sp~g~~l~s-~----s~Dg~i~iwd~~~~~~~~~  439 (473)
                          ++.|++|+|||+.+++....+         ..|...|..++|||||++++. +    +.||.|+|||.++++....
T Consensus       324 ~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~  403 (426)
T d1hzua2         324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV  403 (426)
T ss_dssp             TCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEE
T ss_pred             CCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEE
Confidence                566889999999998766543         245667999999999997643 2    3588899999999999888


Q ss_pred             ccccCCCEEEEEEeeCCCEEE
Q 011978          440 LPGHADEVFAVDWSPDGEKVA  460 (473)
Q Consensus       440 ~~~h~~~i~~l~~s~d~~~l~  460 (473)
                      +.++.      .++|+|++-+
T Consensus       404 i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         404 VKDPR------LITPTGKFNV  418 (426)
T ss_dssp             ECCTT------CCSEEEEEEH
T ss_pred             ECCCC------ccCCCceEeE
Confidence            88764      2378887743

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=9.4e-26  Score=214.28  Aligned_cols=335  Identities=13%  Similarity=-0.023  Sum_probs=222.3

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEe
Q 011978          122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW  201 (473)
Q Consensus       122 ~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  201 (473)
                      ++++.+.||+|.|||..+++.+..+..+. .+..++|||||++|++++.|+.+++||+.+++......-........+.+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            35788899999999999999998887764 69999999999999999999999999998876321110001112233444


Q ss_pred             ceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCcc-----------ccEEEEEecCCC--eEEEeecCCeEEEEE
Q 011978          202 EPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHT-----------LAVTCVKWGGDG--VIYTGSQDCTIKVWE  267 (473)
Q Consensus       202 ~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~~~~--~l~s~~~d~~i~~wd  267 (473)
                      ++ .++++++++ ++++.++++++||..+++.+..+..|.           .....+.+++++  .+++...++.|.+||
T Consensus       113 s~-~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         113 SK-MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             CC-STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             ec-ccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            43 345567765 788899999999999999888776543           334567788877  356777889999999


Q ss_pred             CCCCceeeeee-ccCceEEEEEecccceeeecc-ccCCCcccCCHHHHHHH----------HHhhhhcccCCC--CceEE
Q 011978          268 TTQGKLIRELK-GHGHWVNSLALSTEYALRTGA-FDHTGKQYSSPEEMKKA----------ALERYNKIKGNA--PERLV  333 (473)
Q Consensus       268 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~--~~~l~  333 (473)
                      ..+++...... .++.....++++++......+ .+.....+.........          ............  +....
T Consensus       192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  271 (432)
T d1qksa2         192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT  271 (432)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred             ccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecc
Confidence            98876554333 344566788888876532222 11110000000000000          000000000000  01112


Q ss_pred             EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecC
Q 011978          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD  413 (473)
Q Consensus       334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~  413 (473)
                      ....++.+.+|.....     ....|...+....++|++..+++++.+++.++|+..+..      .|.....++++ ||
T Consensus       272 ~~lg~~~v~~~~~~~~-----~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-pD  339 (432)
T d1qksa2         272 SHMGDDSVALIGTDPE-----GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-FD  339 (432)
T ss_dssp             EBSSSSEEEEEECCTT-----TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-EE
T ss_pred             cccCCceEEecccccc-----cccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-Ee
Confidence            2234677888874332     123456678889999999999999999999999865543      34433444554 99


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe-----CCCcEEeccC
Q 011978          414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG-----KDRVLKLWMG  473 (473)
Q Consensus       414 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~-----~D~~i~~w~~  473 (473)
                      ++.|++++.|+.+++||+.++.   .+..|...+.+++|||||++++.+.     .|+.|+||+.
T Consensus       340 g~~la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         340 IKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             chhhcccccCCceEeccccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence            9999999999999999986543   3445777899999999999885543     4678888863

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=2.5e-25  Score=211.38  Aligned_cols=353  Identities=14%  Similarity=0.037  Sum_probs=221.8

Q ss_pred             EEEEEeceeEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee--EEE---cCCCCCEEE
Q 011978           83 SIVYQPQAVFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKC---TGHKNWVLC  155 (473)
Q Consensus        83 ~~~~~~~~~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~--~~~---~~~~~~v~~  155 (473)
                      .+...+.....++..  .++...+..| ..+..++|||||+++++++.|++|++||+.+++..  ..+   .+|.+.+.+
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            344444444555543  3455666656 46999999999999999999999999999886532  222   345566777


Q ss_pred             EEECCCCCeE-EEEecCCeEEEeeCCCCccccccC----------CCcCCcEEEEEeceeccCCCCc-eEEEeeCCCcEE
Q 011978          156 IAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPL----------SGHKKWITGISWEPVHLNAPCR-RFVSASKDGDAR  223 (473)
Q Consensus       156 l~~s~dg~~l-~s~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~v~~i~~~~~~~~~~~~-~~~s~s~dg~i~  223 (473)
                      ..|+|||++| +++..++.+++||..+++......          ..+.....++.++|     ++. .+++.+.++.+.
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-----dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-----YRPEFIVNVKETGKIL  188 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-----SSSEEEEEETTTTEEE
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-----CCCEEEEEEccCCeEE
Confidence            7889999986 678889999999999887543211          12233445555554     333 456777889999


Q ss_pred             EEECCCCeEEEEec-CccccEEEEEecCCCe-EEEe-ecCCeEEEEECCCCceeeeeecc-----CceEEEEEeccccee
Q 011978          224 IWDVSLRKCVICLS-GHTLAVTCVKWGGDGV-IYTG-SQDCTIKVWETTQGKLIRELKGH-----GHWVNSLALSTEYAL  295 (473)
Q Consensus       224 iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~-~~d~~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~  295 (473)
                      +||..+.+...... .+.....++.|+++|. ++++ ..++.+.++|..+++.+..+...     ...............
T Consensus       189 ~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~  268 (432)
T d1qksa2         189 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV  268 (432)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred             EEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCce
Confidence            99998876544322 3445678899999984 5544 45678999999888776554221     111111111111111


Q ss_pred             eeccccCCCc--ccCCH-HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC
Q 011978          296 RTGAFDHTGK--QYSSP-EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (473)
Q Consensus       296 ~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g  372 (473)
                      ..........  .+... .............+.......+++++.+.+.++|+....       ..|.....++++ ||+
T Consensus       269 ~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~-------~~~~~~~~sv~v-pDg  340 (432)
T d1qksa2         269 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL-------NPEAEISGSVAV-FDI  340 (432)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT-------CSSHHHHTCEEE-EEG
T ss_pred             ecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccC-------CCCCCeeeEEEE-Eec
Confidence            0000000000  00000 000000000011122233456778888889999975432       224444556666 999


Q ss_pred             cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe-----CCCcEEEEECCCCceeecccccCCCE
Q 011978          373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-----KDSTLKVWDIRTQKLKQDLPGHADEV  447 (473)
Q Consensus       373 ~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-----~Dg~i~iwd~~~~~~~~~~~~h~~~i  447 (473)
                      +.+++++.|+.+++||..++..   +..|...|.+++|||||++++.+.     .||.|+|||.+++++...+.+..   
T Consensus       341 ~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~---  414 (432)
T d1qksa2         341 KAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDER---  414 (432)
T ss_dssp             GGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT---
T ss_pred             hhhcccccCCceEecccccccc---cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCCC---
Confidence            9999999999999999765532   235677899999999999885553     46889999999999887776532   


Q ss_pred             EEEEEeeCCCE
Q 011978          448 FAVDWSPDGEK  458 (473)
Q Consensus       448 ~~l~~s~d~~~  458 (473)
                         .++|+|++
T Consensus       415 ---~~tp~G~~  422 (432)
T d1qksa2         415 ---LVTPTGKF  422 (432)
T ss_dssp             ---CCSEEEEE
T ss_pred             ---ccCCCeeE
Confidence               12666654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=9.1e-22  Score=177.19  Aligned_cols=271  Identities=13%  Similarity=0.132  Sum_probs=198.2

Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEE-EEecCCeEEEeeCCCCccccccCCCcCCcEEEEEec
Q 011978          124 ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE  202 (473)
Q Consensus       124 at~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~  202 (473)
                      ++++.|++|.+||+++++.+..+... .....++|+|||++|+ +++.++.|++||+.+++.... +..+. ....+.|.
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-~~~~~-~~~~~~~~   82 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-VPAGS-SPQGVAVS   82 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-EECSS-SEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-eeccc-cccccccc
Confidence            45678999999999999877766543 4578999999999885 667789999999998876543 33333 35667766


Q ss_pred             eeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe--EEEeecCCeEEEEECCCCceeeeeecc
Q 011978          203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV--IYTGSQDCTIKVWETTQGKLIRELKGH  280 (473)
Q Consensus       203 ~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~i~~wd~~~~~~~~~~~~~  280 (473)
                      +.    ....++++..++.+.+|+..+++....+..+. ...++.+++++.  ++++..++.+.+|+..+++.+..+..+
T Consensus        83 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
T d1l0qa2          83 PD----GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (301)
T ss_dssp             TT----SSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             cc----cccccccccccceeeecccccceeeeeccccc-cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC
Confidence            52    22355667788899999999998888776554 567888998873  456778899999999998888776654


Q ss_pred             CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc
Q 011978          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ  360 (473)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  360 (473)
                      .. ...+.++++.                                   ...+++...++.+.+|+.....  ........
T Consensus       158 ~~-~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  199 (301)
T d1l0qa2         158 RS-PKGIAVTPDG-----------------------------------TKVYVANFDSMSISVIDTVTNS--VIDTVKVE  199 (301)
T ss_dssp             SS-EEEEEECTTS-----------------------------------SEEEEEETTTTEEEEEETTTTE--EEEEEECS
T ss_pred             CC-ceEEEeeccc-----------------------------------cceeeeccccccccccccccee--eeeccccc
Confidence            43 3444444431                                   1124444555667777654322  11222233


Q ss_pred             cceeEEEECCCCcEEEEEEC---CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE-EEEeCCCcEEEEECCCCce
Q 011978          361 QLVNHVYFSPDGQWVASASF---DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL-LSGSKDSTLKVWDIRTQKL  436 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs~---d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l-~s~s~Dg~i~iwd~~~~~~  436 (473)
                      ..+..++|+++++.++.+..   ++.|++||..+++.+..+..+ ..+.+++|+|||++| ++++.|++|++||+.+++.
T Consensus       200 ~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            45778999999998876654   468999999999998887754 468999999999986 5777899999999999988


Q ss_pred             eeccc
Q 011978          437 KQDLP  441 (473)
Q Consensus       437 ~~~~~  441 (473)
                      +.+++
T Consensus       279 ~~~~~  283 (301)
T d1l0qa2         279 TATMA  283 (301)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=3.1e-24  Score=197.54  Aligned_cols=310  Identities=10%  Similarity=0.024  Sum_probs=203.4

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEECCCCCeEE-EEecCCeEEEeeCCCCccccccCCC
Q 011978          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSG  191 (473)
Q Consensus       114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~  191 (473)
                      ++|++++++|++++.|++|.+||+.+++.+..++ .|...+.+++|+|||++++ ++..++.|++||+.+++........
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4789999999999999999999999998887776 4566788999999999875 5567899999999998754322111


Q ss_pred             cC-----CcEEEEEeceeccCCCCceEEEee------------CCCcEEEEECCCCeEEEEecCc--cccEEEEEecCCC
Q 011978          192 HK-----KWITGISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDG  252 (473)
Q Consensus       192 ~~-----~~v~~i~~~~~~~~~~~~~~~s~s------------~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~  252 (473)
                      ..     ..+..+.++|     ++.++++++            .+..+.+||..+++....+..+  ...+..+.+++++
T Consensus        82 ~~~~~~~~~~~~v~~s~-----DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISP-----DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             CSTTEEEECSSCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             ccccccCCceEEEEEec-----CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence            11     1222344443     555555443            5778899998776544322211  1234445667777


Q ss_pred             eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (473)
Q Consensus       253 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (473)
                      .++..+  +.+.+|+..+++.+..+..+.. ...+.++++.................          ............+
T Consensus       157 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~  223 (346)
T d1jmxb_         157 SLYVAG--PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSML----------YTIARFKDDKQDP  223 (346)
T ss_dssp             CEEEES--SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEE----------EEEEEC-------
T ss_pred             EEEEeC--CcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEee----------eeeeeeccCceeE
Confidence            666543  5688999998888776654322 11112222211000000000000000          0000000011123


Q ss_pred             EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec
Q 011978          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA  412 (473)
Q Consensus       333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp  412 (473)
                      .++..+..+.+|+.............+...+..+.+++++.+++.+.. +.|++||..+++.+..+. +...+.+++|||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~  301 (346)
T d1jmxb_         224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK  301 (346)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECS
T ss_pred             eeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcC
Confidence            445556778889877665555556677788889999999988887765 579999999999888776 345689999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeccccc
Q 011978          413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH  443 (473)
Q Consensus       413 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h  443 (473)
                      ||++|++++.|+.|++||+.+++.+.++.-.
T Consensus       302 DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            9999999999999999999999988776543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=5.5e-23  Score=188.30  Aligned_cols=301  Identities=10%  Similarity=0.040  Sum_probs=198.4

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcC--CCCCEEEEEECCCCCeEE-EEecCCeEEEeeCCCCccccccCCCcCCcEE
Q 011978          121 RQLASGSGDTTVRLWDLNTQTPMFKCTG--HKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGHKKWIT  197 (473)
Q Consensus       121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~--~~~~v~~l~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  197 (473)
                      +++++++.|++|+|||+.+.+.+..+..  +...+.+++|+|||++++ +++.++.|.+||+.+++.... ...+.....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~-~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR-IDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE-EECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEE-EecCCCccc
Confidence            4789999999999999999988777653  345678999999999875 667889999999999876432 222222221


Q ss_pred             EEEeceeccCCCCceEEEee------------CCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEE
Q 011978          198 GISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIK  264 (473)
Q Consensus       198 ~i~~~~~~~~~~~~~~~s~s------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~  264 (473)
                      ........+++++.+++++.            .+..+.+||..+++....+..+ ..+.+++|++++. +++++  +.+.
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~--~~~~  157 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLG--RDLH  157 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEES--SSEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEc--CCcc
Confidence            11111122233555555443            4678999999999988877654 4577889999984 66665  4477


Q ss_pred             EEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978          265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (473)
Q Consensus       265 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  344 (473)
                      +||..+++....+..+..... ..+.++.....  ........          ....................++.+.+|
T Consensus       158 ~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (337)
T d1pbyb_         158 VMDPEAGTLVEDKPIQSWEAE-TYAQPDVLAVW--NQHESSGV----------MATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             EEETTTTEEEEEECSTTTTTT-TBCCCBCCCCC--CCCTTTTE----------EEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             eeeeecCcEEEEeecCCcccc-ceecCCcceee--ccccccce----------eeeeeeeeeeccceeeecccCccEEEE
Confidence            899998887766544321100 00000000000  00000000          000000000001112233445678888


Q ss_pred             eCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC
Q 011978          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS  424 (473)
Q Consensus       345 d~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg  424 (473)
                      +.............+...+..++++|++.+++.+  ++.+++||..+++.+..+. +...+.+++|+|||++|++++.|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~  301 (337)
T d1pbyb_         225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSS
T ss_pred             EcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCC
Confidence            8776554445555677778889999999998876  4789999999999988875 456789999999999999999999


Q ss_pred             cEEEEECCCCceeeccc
Q 011978          425 TLKVWDIRTQKLKQDLP  441 (473)
Q Consensus       425 ~i~iwd~~~~~~~~~~~  441 (473)
                      +|++||..+++.+.+++
T Consensus       302 ~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         302 DLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEEEETTTCCEEEEEE
T ss_pred             cEEEEECCCCcEEEEEE
Confidence            99999999988776554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=7.4e-20  Score=164.47  Aligned_cols=259  Identities=18%  Similarity=0.195  Sum_probs=193.9

Q ss_pred             EEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccccEE
Q 011978          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVT  244 (473)
Q Consensus       166 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~  244 (473)
                      ++++.|++|.+||+++++.......  .....+++|+|     +++++ ++++.++.|++||+.+++.+..+..+. .+.
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~--g~~p~~va~sp-----dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~   77 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV--GSNPMGAVISP-----DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQ   77 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECT-----TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC--CCCceEEEEeC-----CCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccc
Confidence            4567889999999999986543322  23466777776     55555 677889999999999999998887765 457


Q ss_pred             EEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978          245 CVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (473)
Q Consensus       245 ~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (473)
                      .+.|++++  .++++..++.+.+|+..+++....+..+.. ...+.++++.                             
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg-----------------------------  127 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS-PLGLALSPDG-----------------------------  127 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTS-----------------------------
T ss_pred             ccccccccccccccccccceeeecccccceeeeecccccc-ceEEEeecCC-----------------------------
Confidence            88898887  355677888999999999988877765543 3445555432                             


Q ss_pred             cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-CcEEEEeCCCCceEEEeeCC
Q 011978          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFRGH  401 (473)
Q Consensus       323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-~~v~lwd~~~~~~~~~~~~h  401 (473)
                            ...++++..+..+.+|+.......  ....+...+..++++|+++.+++++.+ +.+.+|+....+....+..+
T Consensus       128 ------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (301)
T d1l0qa2         128 ------KKLYVTNNGDKTVSVINTVTKAVI--NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE  199 (301)
T ss_dssp             ------SEEEEEETTTTEEEEEETTTTEEE--EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             ------Ceeeeeeccccceeeeecccccee--eecccCCCceEEEeeccccceeeecccccccccccccceeeeeccccc
Confidence                  224567778889999987554322  222334457889999999998888766 56778887777776666654


Q ss_pred             ccCEEEEEEecCCCEEEEEeC---CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEE-EEEeCCCcEEecc
Q 011978          402 VGPVYQISWSADSRLLLSGSK---DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLWM  472 (473)
Q Consensus       402 ~~~v~~v~~sp~g~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~~w~  472 (473)
                       ..+..++|++++..++.++.   +++|++||+.+++....+..+ ..+.+++|+|||++| ++++.|++|++|+
T Consensus       200 -~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         200 -AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             -SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             -CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence             45678999999998776543   468999999999888777643 568999999999987 6788899999996

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=1.3e-19  Score=168.42  Aligned_cols=306  Identities=11%  Similarity=-0.009  Sum_probs=200.8

Q ss_pred             cCCcccEEEEEECCCCCeEEEE-----eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------
Q 011978          105 AGHTEAVLSVAFSPDGRQLASG-----SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------  169 (473)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~-----s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------  169 (473)
                      .+|..++.+++++|||++++..     +.++.|.+||..+++.+..+..+...  .++|+|||++|++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            4588889999999999998764     24567999999999988877665543  799999999998875          


Q ss_pred             cCCeEEEeeCCCCccccccCCCcCCcEEEEEecee--ccCCCCceEEE--eeCCCcEEEEECCCCeEEEEecCccccEEE
Q 011978          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV--HLNAPCRRFVS--ASKDGDARIWDVSLRKCVICLSGHTLAVTC  245 (473)
Q Consensus       170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~~~~~~s--~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~  245 (473)
                      .++.|.+||..+++.... ...+..........|.  .+..++..++.  ...++.+.+|+....+.....    ....+
T Consensus        95 ~~~~v~v~D~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  169 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIAD-IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTC  169 (373)
T ss_pred             cceEEEEEECCCCcEEEE-EecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----cccee
Confidence            357899999998876432 2223222222221111  11123333333  244567788887776654433    33556


Q ss_pred             EEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCce------EEEEEecccceeeeccccCCCcccCCHHHHHHHH
Q 011978          246 VKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHW------VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (473)
Q Consensus       246 ~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (473)
                      +.+++++  .+++.+.|+.+.+|+...++.......+...      .......                           
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  222 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN---------------------------  222 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC---------------------------
Confidence            7777776  4678899999999999887766554322111      0001111                           


Q ss_pred             HhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee-----------eecCcccceeEEEECCCCcEE----------E
Q 011978          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT-----------RMTGHQQLVNHVYFSPDGQWV----------A  376 (473)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----------~~~~~~~~v~~v~~sp~g~~l----------a  376 (473)
                                ....++..+.++.+.+|+.........           ...........++++|++..+          +
T Consensus       223 ----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  292 (373)
T d2madh_         223 ----------KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             ----------CCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEE
Confidence                      112345556677777776543221100           000111223345666666544          4


Q ss_pred             EEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCE--EEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEee
Q 011978          377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRL--LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       377 sgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~--l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~  454 (473)
                      +...++.+.+||..+++.+..+. +...+.+++|+|||+.  +++++.|++|++||+.+++.+.++.++....+.|++.+
T Consensus       293 ~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         293 LHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             eecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            45566789999999999888775 5567899999999984  46888999999999999999999988877777777654


Q ss_pred             C
Q 011978          455 D  455 (473)
Q Consensus       455 d  455 (473)
                      +
T Consensus       372 ~  372 (373)
T d2madh_         372 E  372 (373)
T ss_pred             C
Confidence            3

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=8.7e-20  Score=167.32  Aligned_cols=270  Identities=16%  Similarity=0.115  Sum_probs=175.9

Q ss_pred             EEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEE
Q 011978          156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVI  234 (473)
Q Consensus       156 l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~  234 (473)
                      ++|++++++|++++.+++|.+||+.+++........|...+.++.|+|     ++.++ ++++.++.|.+||+.+++.+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-----DG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-----DNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-----TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-----CCCEEEEEECCCCcEEEEeCccCeeee
Confidence            468899999999999999999999999876543334555567788776     55554 667788999999999998887


Q ss_pred             EecCcc------ccEEEEEecCCCe-EEEee------------cCCeEEEEECCCCceeeeeeccC--ceEEEEEecccc
Q 011978          235 CLSGHT------LAVTCVKWGGDGV-IYTGS------------QDCTIKVWETTQGKLIRELKGHG--HWVNSLALSTEY  293 (473)
Q Consensus       235 ~~~~h~------~~v~~~~~~~~~~-l~s~~------------~d~~i~~wd~~~~~~~~~~~~~~--~~v~~~~~~~~~  293 (473)
                      .+....      ..+..++|++||. +++++            .++.+.+||..+++....+..+.  ..+..+..+++ 
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  155 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-  155 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT-
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC-
Confidence            654321      2345688999884 54443            46778888887776554332211  01111111111 


Q ss_pred             eeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEEC----
Q 011978          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS----  369 (473)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s----  369 (473)
                                                          ..++..+  ..+.+|+...... ...+..+ .....+.++    
T Consensus       156 ------------------------------------~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~  195 (346)
T d1jmxb_         156 ------------------------------------GSLYVAG--PDIYKMDVKTGKY-TVALPLR-NWNRKGYSAPDVL  195 (346)
T ss_dssp             ------------------------------------SCEEEES--SSEEEECTTTCCE-EEEECST-TCCCTTBCCCBCC
T ss_pred             ------------------------------------CEEEEeC--CcceEEEccCCCE-EEEEecC-CCccceEEecccc
Confidence                                                1122221  2345555433221 1111111 111112222    


Q ss_pred             ----------------------CCCcEEEEEECCCcEEEEeCCCCceEE-EeeCCccCEEEEEEecCCCEEEEEeCCCcE
Q 011978          370 ----------------------PDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQISWSADSRLLLSGSKDSTL  426 (473)
Q Consensus       370 ----------------------p~g~~lasgs~d~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i  426 (473)
                                            +....++++..+..+.+||..++.... .+..|...+..+.+++++.+++..+ ++.|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v  274 (346)
T d1jmxb_         196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRL  274 (346)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEE
T ss_pred             EEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeE
Confidence                                  233444555666778999998887554 4556888899999999998888776 4579


Q ss_pred             EEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978          427 KVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       427 ~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      ++||..+++.+..+. +...+.+++|||||++|++++.|+.|++|+.
T Consensus       275 ~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         275 AKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             EEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             EEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            999999998877664 3456899999999999999999999999974

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=9.9e-19  Score=161.12  Aligned_cols=300  Identities=12%  Similarity=0.038  Sum_probs=185.1

Q ss_pred             EEECCCCCeEEEEe-----CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE----------ecCCeEEEee
Q 011978          114 VAFSPDGRQLASGS-----GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG----------SKAGELQCWD  178 (473)
Q Consensus       114 ~~~sp~~~~lat~s-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~----------~~dg~i~iwd  178 (473)
                      .+.+|||++++...     .+++|.+||..+++.+..+..+..+  .++|||||++|++.          ..|+.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            35689999987653     4668999999999888777655443  79999999988764          3478999999


Q ss_pred             CCCCccccccC--CCcC----CcEEEEEeceeccCCCCceEEEe--eCCCcEEEEECCCCeEEEEecCccccEEEEEecC
Q 011978          179 PQTGKPSGNPL--SGHK----KWITGISWEPVHLNAPCRRFVSA--SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (473)
Q Consensus       179 ~~~~~~~~~~~--~~~~----~~v~~i~~~~~~~~~~~~~~~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  250 (473)
                      ..+++......  ..+.    .....+.|.|     ++.+++.+  +.+..+.+||..+++.+..+..+.....  ....
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  157 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTP-----DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI--FPTA  157 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECT-----TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE--EEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEec-----CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE--eecC
Confidence            99887543211  1111    1112234433     55555554  4567899999999988877654432211  1111


Q ss_pred             CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978          251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (473)
Q Consensus       251 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (473)
                      ....++.+.|+...++..................     ........                         ......+.
T Consensus       158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------------------------~~~~~~~~  207 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINH-------------------------PAYSQKAG  207 (355)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSC-------------------------CEEETTTT
T ss_pred             CcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeee-------------------------ccccCCCC
Confidence            2234445556655555443332221111000000     00000000                         00011234


Q ss_pred             eEEEecCCceEEEEeCCCCCCCee-eecC----------cccceeEEEECCCCcEEEEEECC----------CcEEEEeC
Q 011978          331 RLVSGSDDFTMFLWEPAVSKQPKT-RMTG----------HQQLVNHVYFSPDGQWVASASFD----------KSIKLWNG  389 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~~~~~~~~-~~~~----------~~~~v~~v~~sp~g~~lasgs~d----------~~v~lwd~  389 (473)
                      .++.++.++.+++|+......... ....          .......++++|++..++..+.+          ..|.+||.
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~  287 (355)
T d2bbkh_         208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  287 (355)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeC
Confidence            677888999999999765432111 1111          11223458899999988876544          36999999


Q ss_pred             CCCceEEEeeCCccCEEEEEEecCCC--EEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEe
Q 011978          390 TTGKFVAVFRGHVGPVYQISWSADSR--LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS  453 (473)
Q Consensus       390 ~~~~~~~~~~~h~~~v~~v~~sp~g~--~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s  453 (473)
                      .+++.+..+.. ...+.+++|+|||+  ++++++.|++|++||+.+++.+.++.++...-..+.+.
T Consensus       288 ~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~  352 (355)
T d2bbkh_         288 KTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA  352 (355)
T ss_dssp             TTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECC
T ss_pred             CCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeC
Confidence            99998887764 34688999999997  45667789999999999999988887665433344433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.8e-18  Score=157.70  Aligned_cols=263  Identities=11%  Similarity=0.074  Sum_probs=177.1

Q ss_pred             CeEEEEecCCeEEEeeCCCCcccccc-CCCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCcc
Q 011978          163 KHLVSGSKAGELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHT  240 (473)
Q Consensus       163 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~  240 (473)
                      +++++++.|++|++||+++++..... ...+...+.++.|+|     +++++ ++++.++.|.+||+.+++.+..+..+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-----Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-----GGRIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-----TSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC-----CCCEEEEEECCCCeEEEEECCCCcEEEEEecCC
Confidence            47999999999999999998765432 233344566777766     55555 677789999999999999888776543


Q ss_pred             c-----cEEEEEecCCCe-EEEee------------cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978          241 L-----AVTCVKWGGDGV-IYTGS------------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       241 ~-----~v~~~~~~~~~~-l~s~~------------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                      .     .+..++|++++. ++++.            .+..+.+||..+++....+..+. .+..++++++.         
T Consensus        77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg---------  146 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-QITMLAWARDG---------  146 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-SCCCEEECTTS---------
T ss_pred             CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC-CceEEEEcCCC---------
Confidence            3     234678888873 55444            46788899999888777665432 24445555442         


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-----------------------
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-----------------------  359 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------------  359 (473)
                                                 ..+++++.+  ..+||........ .+..+                       
T Consensus       147 ---------------------------~~l~~~~~~--~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (337)
T d1pbyb_         147 ---------------------------SKLYGLGRD--LHVMDPEAGTLVE-DKPIQSWEAETYAQPDVLAVWNQHESSG  196 (337)
T ss_dssp             ---------------------------SCEEEESSS--EEEEETTTTEEEE-EECSTTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred             ---------------------------CEEEEEcCC--cceeeeecCcEEE-EeecCCccccceecCCcceeeccccccc
Confidence                                       234444433  4556654322111 11000                       


Q ss_pred             ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE-EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ  438 (473)
Q Consensus       360 ~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~  438 (473)
                      ...........+......++.++.+.+||..++.... .+..+...+..+.++|++.+++++  ++.|++||+.+++.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~  274 (337)
T d1pbyb_         197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK  274 (337)
T ss_dssp             EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE
T ss_pred             eeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEE
Confidence            0001111111222222223345569999999887654 355677788999999999998766  5889999999998887


Q ss_pred             cccccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978          439 DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  473 (473)
Q Consensus       439 ~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~  473 (473)
                      .+. +...+.+++|+|||++|++++.|++|++|+.
T Consensus       275 ~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         275 RVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             EEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            764 5567899999999999999999999999973

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=7.3e-17  Score=146.86  Aligned_cols=274  Identities=11%  Similarity=0.105  Sum_probs=167.8

Q ss_pred             EEEEeCCCeEEEEeCCCCcee--EEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCCcccccc--CCCcCCcEE
Q 011978          123 LASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNP--LSGHKKWIT  197 (473)
Q Consensus       123 lat~s~d~~i~iwd~~~~~~~--~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~~~~~~~--~~~~~~~v~  197 (473)
                      +++++.|++|++|++++...+  .....|...+.+|+|+|||++|++++ .|+.|++|++.........  ...+...+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            466779999999998765432  33346788899999999999996555 5899999998765422111  112223344


Q ss_pred             EEEeceeccCCCCceEEEee-CCCcEEEEECCCCeEE--EEecCccccEEEEEecCCCe-EEEe-ecCCeEEEEECCCCc
Q 011978          198 GISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV-IYTG-SQDCTIKVWETTQGK  272 (473)
Q Consensus       198 ~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~-l~s~-~~d~~i~~wd~~~~~  272 (473)
                      .+.|+|     +++++++++ .++.+.+|+.......  .....+...+.++.+++++. ++.+ ..+..+.+|+.....
T Consensus        87 ~l~~sp-----Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_          87 HISTDH-----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             EEEECT-----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             EEEEcC-----CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            566665     566777766 4678999987765433  33345666778888998874 4444 466789999976653


Q ss_pred             eeeeee------ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978          273 LIRELK------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (473)
Q Consensus       273 ~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  346 (473)
                      ......      ........++++++..                                   ....+....+...+|+.
T Consensus       162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~-----------------------------------~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQ-----------------------------------YAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSS-----------------------------------EEEEEETTTTEEEEEES
T ss_pred             cceeeeceeeeeecCCCccEEEEeccce-----------------------------------eEEeeccccCceEEEee
Confidence            322111      1122223333333211                                   12334444555555554


Q ss_pred             CCCCCCeee---e------cCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEe---eCCccCEEEEEEecC
Q 011978          347 AVSKQPKTR---M------TGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVF---RGHVGPVYQISWSAD  413 (473)
Q Consensus       347 ~~~~~~~~~---~------~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~---~~h~~~v~~v~~sp~  413 (473)
                      .........   .      .........+++++++++++... .++.+.+|+..........   ..+...+.+++|+||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spD  286 (333)
T d1ri6a_         207 KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS  286 (333)
T ss_dssp             SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT
T ss_pred             cccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCC
Confidence            322211110   0      11234566789999998776654 5678999987654332222   223455778999999


Q ss_pred             CCEEEEEe-CCCcEEEEEC--CCCce
Q 011978          414 SRLLLSGS-KDSTLKVWDI--RTQKL  436 (473)
Q Consensus       414 g~~l~s~s-~Dg~i~iwd~--~~~~~  436 (473)
                      |++|++++ .++.|++|++  .++++
T Consensus       287 Gk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         287 GKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             SSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             CCEEEEEECCCCeEEEEEEECCCCcE
Confidence            99887765 5688999955  55554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=7.2e-16  Score=142.75  Aligned_cols=273  Identities=10%  Similarity=-0.054  Sum_probs=179.7

Q ss_pred             EEEECCCCCeEEEEe----------CCCeEEEEeCCCCceeEEEcCCCCCE-------EEEEECCCCCeEEEEe--cCCe
Q 011978          113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGHKNWV-------LCIAWSADGKHLVSGS--KAGE  173 (473)
Q Consensus       113 ~~~~sp~~~~lat~s----------~d~~i~iwd~~~~~~~~~~~~~~~~v-------~~l~~s~dg~~l~s~~--~dg~  173 (473)
                      .++|+|||++|++++          .++.|++||..++++......+....       ..+.|++|++.++...  .++.
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            689999999998874          46789999999998877665554433       3478889998776654  3567


Q ss_pred             EEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc------cccEEEEE
Q 011978          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH------TLAVTCVK  247 (473)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h------~~~v~~~~  247 (473)
                      +.+|+..+.+...     +.....++.+.|.    ....+++.+.|+.+.+||...+........+      ........
T Consensus       150 ~~~~~~~~~~~~~-----~~~~~~~~~~s~~----g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (373)
T d2madh_         150 VGLVVQGGSSDDQ-----LLSSPTCYHIHPG----APSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQ  220 (373)
T ss_pred             eEEeeccCCeEEE-----EeccceeEEEecC----CCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEE
Confidence            8899887665322     2223445555552    2346788999999999999888776554322      22234456


Q ss_pred             ecCCCeEEEeecCCeEEEEECCCCceee--eeeccCceEEEEEeccccee-eeccccCCCcccCCHHHHHHHHHhhhhcc
Q 011978          248 WGGDGVIYTGSQDCTIKVWETTQGKLIR--ELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (473)
Q Consensus       248 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (473)
                      +.+++.++..+.++.+.+|+...+....  ....+..........+.... .....+... .                ..
T Consensus       221 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~----------------~~  283 (373)
T d2madh_         221 ANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG-I----------------YL  283 (373)
T ss_pred             ECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCe-E----------------EE
Confidence            6777778888899999999988765432  22222222222222221110 000000000 0                00


Q ss_pred             cCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc--EEEEEECCCcEEEEeCCCCceEEEeeCCc
Q 011978          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ--WVASASFDKSIKLWNGTTGKFVAVFRGHV  402 (473)
Q Consensus       325 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~--~lasgs~d~~v~lwd~~~~~~~~~~~~h~  402 (473)
                      .......++....++.+.+||....+...  ...+...+..++|+|||+  ++++++.|++|++||..+++.+..+..+.
T Consensus       284 ~~~~~~~~~~~~~~~~v~~~d~~t~~~~~--~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g  361 (373)
T d2madh_         284 LTSEQSAWKLHAAAKEVTSVTGLVGQTSS--QISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG  361 (373)
T ss_pred             ecCCCceEEeecCCCeEEEEECCCCcEEE--EecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCC
Confidence            11223456777888899999976654332  233556788999999998  45788999999999999999999998887


Q ss_pred             cCEEEEEEecC
Q 011978          403 GPVYQISWSAD  413 (473)
Q Consensus       403 ~~v~~v~~sp~  413 (473)
                      ...+.+++.++
T Consensus       362 ~~P~~l~~~~~  372 (373)
T d2madh_         362 SGPQVLSVMNE  372 (373)
T ss_pred             CCCcEEEEecC
Confidence            77777776553

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=5.1e-16  Score=142.63  Aligned_cols=270  Identities=13%  Similarity=0.061  Sum_probs=173.9

Q ss_pred             EEECCCCCeEEEEe-----cCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe----------eCCC
Q 011978          156 IAWSADGKHLVSGS-----KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA----------SKDG  220 (473)
Q Consensus       156 l~~s~dg~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~----------s~dg  220 (473)
                      .+.+|||+.++...     .++.+.+||..+++..... ..+.  ...++|+|     ++++++..          +.|+
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-~~g~--~~~~a~Sp-----Dg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGF--LPNPVVAD-----DGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EECS--SCEEEECT-----TSSCEEEEEEEEEETTEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-ECCC--CCceEEcC-----CCCEEEEEeCCCccccccCCCC
Confidence            35689999987653     4567999999999865533 2222  23577776     55556543          4578


Q ss_pred             cEEEEECCCCeEEEEecCccc-------cEEEEEecCCCe-EEEe--ecCCeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978          221 DARIWDVSLRKCVICLSGHTL-------AVTCVKWGGDGV-IYTG--SQDCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (473)
Q Consensus       221 ~i~iwd~~~~~~~~~~~~h~~-------~v~~~~~~~~~~-l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  290 (473)
                      .|++||..+++.+..+..+..       ....+.|++++. ++.+  +.+..+.+|+..+++.+..+..+........ .
T Consensus        79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  157 (355)
T d2bbkh_          79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT-A  157 (355)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE-E
T ss_pred             EEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec-C
Confidence            999999999988776543221       223467888873 4433  5667899999999988877655433211100 0


Q ss_pred             ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee-----eecCcccceeE
Q 011978          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT-----RMTGHQQLVNH  365 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~v~~  365 (473)
                                                            ....+..+.|+...++..........     ....+...+..
T Consensus       158 --------------------------------------~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (355)
T d2bbkh_         158 --------------------------------------PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH  199 (355)
T ss_dssp             --------------------------------------TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSC
T ss_pred             --------------------------------------CcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeee
Confidence                                                  11122233344333333221111110     11223344556


Q ss_pred             EEECCCCcEEEEEECCCcEEEEeCCCCceEE--EeeCCc----------cCEEEEEEecCCCEEEEEeCC----------
Q 011978          366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVA--VFRGHV----------GPVYQISWSADSRLLLSGSKD----------  423 (473)
Q Consensus       366 v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~--~~~~h~----------~~v~~v~~sp~g~~l~s~s~D----------  423 (473)
                      .++++++..++.++.++.+++|+...++...  ....+.          .....++++|++..++..+.+          
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  279 (355)
T d2bbkh_         200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  279 (355)
T ss_dssp             CEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             ccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCC
Confidence            6788888899999999999999998775422  222221          123458899999987766543          


Q ss_pred             CcEEEEECCCCceeecccccCCCEEEEEEeeCCC--EEEEEeCCCcEEeccC
Q 011978          424 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE--KVASGGKDRVLKLWMG  473 (473)
Q Consensus       424 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~--~l~s~~~D~~i~~w~~  473 (473)
                      +.|.+||..+++.+..+.. ...+.+++|+|||+  ++++++.|+.|++|+.
T Consensus       280 ~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             CeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence            3699999999988877763 35688999999998  4567788999999963

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.8e-14  Score=130.70  Aligned_cols=269  Identities=12%  Similarity=0.168  Sum_probs=166.6

Q ss_pred             eEEEEecCCeEEEeeCCCCcccc-ccCCCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEe---cC
Q 011978          164 HLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICL---SG  238 (473)
Q Consensus       164 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~---~~  238 (473)
                      .+++++.|++|++|+++...... .....|...+..++|+|     +++++ +++..|+.|++|++........+   ..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-----DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~   80 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-----DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA   80 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-----TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-----CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc
Confidence            34677899999999987543221 12235667788888877     55666 55556899999998765332222   22


Q ss_pred             ccccEEEEEecCCCe-EEEee-cCCeEEEEECCCCceeeee--eccCceEEEEEecccceeeeccccCCCcccCCHHHHH
Q 011978          239 HTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETTQGKLIREL--KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (473)
Q Consensus       239 h~~~v~~~~~~~~~~-l~s~~-~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (473)
                      +...+..++|++||. +++++ .++.+.+|+..........  ..+...+.++.++++.                     
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~---------------------  139 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN---------------------  139 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS---------------------
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc---------------------
Confidence            334566799999984 66665 5778999987665443322  2222223333333321                     


Q ss_pred             HHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee-----eecCcccceeEEEECCCCcEEEEEE-CCCcEEEEe
Q 011978          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT-----RMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWN  388 (473)
Q Consensus       315 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd  388 (473)
                                    ...+.....+..+.+|+.........     ...........++|++++.+++... ..+...+|+
T Consensus       140 --------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~  205 (333)
T d1ri6a_         140 --------------RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE  205 (333)
T ss_dssp             --------------SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             --------------eeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEe
Confidence                          11234445566788888654432221     1122334567899999999887665 455677887


Q ss_pred             CCCCc----eEEEee------CCccCEEEEEEecCCCEEEEE-eCCCcEEEEECCCCceeec---ccccCCCEEEEEEee
Q 011978          389 GTTGK----FVAVFR------GHVGPVYQISWSADSRLLLSG-SKDSTLKVWDIRTQKLKQD---LPGHADEVFAVDWSP  454 (473)
Q Consensus       389 ~~~~~----~~~~~~------~h~~~v~~v~~sp~g~~l~s~-s~Dg~i~iwd~~~~~~~~~---~~~h~~~i~~l~~s~  454 (473)
                      .....    ......      ........+++++|+++++.. ..++.+.+|++........   ...+...+..++|+|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp  285 (333)
T d1ri6a_         206 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH  285 (333)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT
T ss_pred             ecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC
Confidence            64322    111221      123457788999999876655 5677899998865432222   222334567899999


Q ss_pred             CCCEEEEEe-CCCcEEecc
Q 011978          455 DGEKVASGG-KDRVLKLWM  472 (473)
Q Consensus       455 d~~~l~s~~-~D~~i~~w~  472 (473)
                      ||++|++++ .++.|++|.
T Consensus       286 DGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         286 SGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             TSSEEEEECTTTCEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEE
Confidence            999987765 468899983

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=2e-14  Score=132.73  Aligned_cols=299  Identities=8%  Similarity=-0.055  Sum_probs=174.4

Q ss_pred             CcccEEEEEECCCCCeEE---EEeCCC--eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cC
Q 011978          107 HTEAVLSVAFSPDGRQLA---SGSGDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KA  171 (473)
Q Consensus       107 h~~~V~~~~~sp~~~~la---t~s~d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~d  171 (473)
                      +.+....++..++++...   ++..++  .+.+||..+++.+.....+...  .++|+|||+.|++.+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            445555667788888642   233444  4667799998887776665544  589999999998754          46


Q ss_pred             CeEEEeeCCCCccccccC-CC-----cCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCCCeEEEEecCccccEE
Q 011978          172 GELQCWDPQTGKPSGNPL-SG-----HKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVT  244 (473)
Q Consensus       172 g~i~iwd~~~~~~~~~~~-~~-----~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~  244 (473)
                      +.|.+||..+++...... ..     .......+.|+|     ++++++.+. .++.+.+||+.+++.+..+..+.....
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-----DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  170 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-----SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI  170 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-----TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECC-----CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE
Confidence            789999999887543211 00     001112344544     667777665 579999999999998887765443221


Q ss_pred             EEEecCCCeEEEeecCCeEEEEECCCCceeeeeec------cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       245 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                        ...+...+++.+.||++.++++...........      +...+......++.           ..+           
T Consensus       171 --~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~-----------  226 (368)
T d1mdah_         171 --HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG-----------MLV-----------  226 (368)
T ss_dssp             --EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT-----------EEE-----------
T ss_pred             --ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc-----------EEE-----------
Confidence              112334667788899998888765433221110      00000011111000           000           


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeec-CcccceeEEEECCCCcEEEEEECC---------CcEEEEe
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASASFD---------KSIKLWN  388 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~lasgs~d---------~~v~lwd  388 (473)
                            ........+....++.+.+++............ ........++++|++..++....+         ..|.+||
T Consensus       227 ------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D  300 (368)
T d1mdah_         227 ------WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT  300 (368)
T ss_dssp             ------ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred             ------EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence                  000000111111222222222211111100000 011223457899998877665322         2599999


Q ss_pred             CCCCceEEEeeCCccCEEEEEEecCCCE--EEEEeCCCcEEEEECCCCceeeccccc
Q 011978          389 GTTGKFVAVFRGHVGPVYQISWSADSRL--LLSGSKDSTLKVWDIRTQKLKQDLPGH  443 (473)
Q Consensus       389 ~~~~~~~~~~~~h~~~v~~v~~sp~g~~--l~s~s~Dg~i~iwd~~~~~~~~~~~~h  443 (473)
                      ..+++.+..+.. ...+.+++|+|||+.  +++++.|++|++||..+++.+.+++..
T Consensus       301 ~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         301 ASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             SSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             CCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            999998887763 356889999999973  456778999999999999998887743

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=9.6e-14  Score=132.55  Aligned_cols=145  Identities=10%  Similarity=0.091  Sum_probs=105.9

Q ss_pred             EEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-----CCCCCEEEEEECCCCCeEEEEec---------CCeEEEee
Q 011978          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-----GHKNWVLCIAWSADGKHLVSGSK---------AGELQCWD  178 (473)
Q Consensus       113 ~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~s~dg~~l~s~~~---------dg~i~iwd  178 (473)
                      .+.|.++++++..  .|+.+.+||+.+++....+.     .|...|.++.|||||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            3678999987764  57889999999987655443     44578999999999999998753         56789999


Q ss_pred             CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc------------------c
Q 011978          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH------------------T  240 (473)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h------------------~  240 (473)
                      +.+++..  .+..+...+..+.|+|     ++.+++.. .++.+.+|+..+++.......+                  .
T Consensus        99 ~~~~~~~--~l~~~~~~~~~~~~SP-----DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~  170 (470)
T d2bgra1          99 LNKRQLI--TEERIPNNTQWVTWSP-----VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (470)
T ss_dssp             TTTTEEC--CSSCCCTTEEEEEECS-----STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             CCCCccc--ccccCCcccccccccc-----CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeec
Confidence            9988643  4677888899999988     56677764 5789999999888765543222                  1


Q ss_pred             ccEEEEEecCCCe-EEEeecC-CeEEEEE
Q 011978          241 LAVTCVKWGGDGV-IYTGSQD-CTIKVWE  267 (473)
Q Consensus       241 ~~v~~~~~~~~~~-l~s~~~d-~~i~~wd  267 (473)
                      .....+.|+|||. |+....| ..+..|.
T Consensus       171 ~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         171 SAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             CCccccEECCCCCccceeEecCCcCceEE
Confidence            2234577999984 6655544 3355554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.59  E-value=3e-13  Score=129.05  Aligned_cols=82  Identities=16%  Similarity=0.174  Sum_probs=68.6

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeC---------CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSG---------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~  173 (473)
                      .+.+|...|.+++|||||++|+.++.         ++.+.|||+.+++. ..+..|...+..+.|||||+.||.. .++.
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~  133 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNND  133 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-eccc
Confidence            55678889999999999999998753         56789999998764 4567788899999999999999985 5678


Q ss_pred             EEEeeCCCCcccc
Q 011978          174 LQCWDPQTGKPSG  186 (473)
Q Consensus       174 i~iwd~~~~~~~~  186 (473)
                      +++|+..+++...
T Consensus       134 l~~~~~~~g~~~~  146 (470)
T d2bgra1         134 IYVKIEPNLPSYR  146 (470)
T ss_dssp             EEEESSTTSCCEE
T ss_pred             ceEEECCCCceee
Confidence            9999998876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=7.4e-15  Score=135.13  Aligned_cols=299  Identities=12%  Similarity=0.059  Sum_probs=171.0

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcC------------------------------CCCCEEEEEECCCCCeEEEEe-cC
Q 011978          123 LASGSGDTTVRLWDLNTQTPMFKCTG------------------------------HKNWVLCIAWSADGKHLVSGS-KA  171 (473)
Q Consensus       123 lat~s~d~~i~iwd~~~~~~~~~~~~------------------------------~~~~v~~l~~s~dg~~l~s~~-~d  171 (473)
                      +++++.+|.|++|++.+.+.+..+..                              |........++|||++|+... .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            45777899999999988776554321                              223345555679999997665 67


Q ss_pred             CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE------------------EEEECCCCeEE
Q 011978          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA------------------RIWDVSLRKCV  233 (473)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i------------------~iwd~~~~~~~  233 (473)
                      +.|.++|+.+++......-.+.....++.++|...    ..++.+..+..+                  ..+|..+.+..
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~----t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPK----TNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSB----CCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCC----EEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            89999999998765433333455677788776321    123443333333                  44677666655


Q ss_pred             EEecCccccEEEEEecCCCe-EEEeecC-CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978          234 ICLSGHTLAVTCVKWGGDGV-IYTGSQD-CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (473)
Q Consensus       234 ~~~~~h~~~v~~~~~~~~~~-l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (473)
                      .+..-. .....+.++++|. +++.+.+ ..+..++..+.+....+       .....                    +.
T Consensus       170 ~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i-------~v~n~--------------------p~  221 (441)
T d1qnia2         170 WQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWV-------VVFNV--------------------ER  221 (441)
T ss_dssp             EEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEE-------EEEEH--------------------HH
T ss_pred             EEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEE-------EeCCc--------------------cc
Confidence            444322 2355677888874 4444433 23322232222221111       00000                    00


Q ss_pred             HHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEE-EEECCCcEEEEeCC
Q 011978          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA-SASFDKSIKLWNGT  390 (473)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~la-sgs~d~~v~lwd~~  390 (473)
                      ......           .......+.++.+.+++.... .....+... .....++++|||++++ ++..+++|.+||++
T Consensus       222 ~~~~~~-----------dGk~~~v~~~~v~vvd~~~~~-~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         222 IAAAVK-----------AGNFKTIGDSKVPVVDGRGES-EFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             HHHHHH-----------TTCCBCCTTCCCCEEECSSSC-SSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             eEEEec-----------CCCEEEeCCCCcEEEEcccCC-ceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence            000000           001122233555556553322 222233332 3357799999999875 56779999999986


Q ss_pred             CCceE--------EEeeC---CccCEEEEEEecCCCEEEEEeCCCcEEEEECCC----------Cceeecc-----cccC
Q 011978          391 TGKFV--------AVFRG---HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT----------QKLKQDL-----PGHA  444 (473)
Q Consensus       391 ~~~~~--------~~~~~---h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~----------~~~~~~~-----~~h~  444 (473)
                      +....        ..+.+   ..-.....+|.++|+.+.+...|..|..|++..          ......+     .||.
T Consensus       289 k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~  368 (441)
T d1qnia2         289 KLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN  368 (441)
T ss_dssp             GHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE
T ss_pred             hhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCC
Confidence            52210        00111   111245568999999899999999999999742          1122222     5777


Q ss_pred             CCEEEEEEeeCCCEEEEE---eCCC
Q 011978          445 DEVFAVDWSPDGEKVASG---GKDR  466 (473)
Q Consensus       445 ~~i~~l~~s~d~~~l~s~---~~D~  466 (473)
                      ..+.+..++|||+||+++   +.|+
T Consensus       369 ~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         369 HASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             EETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             ccccccccCCCCcEEEecCcccccc
Confidence            777777899999999999   5554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=7.3e-13  Score=122.00  Aligned_cols=272  Identities=10%  Similarity=-0.062  Sum_probs=168.8

Q ss_pred             CCEEEEEECCCCCeEEE---EecCC--eEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe---------
Q 011978          151 NWVLCIAWSADGKHLVS---GSKAG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA---------  216 (473)
Q Consensus       151 ~~v~~l~~s~dg~~l~s---~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~---------  216 (473)
                      +....++..++++....   ...++  .+.+||..+++..... ..+...  .+.|+|     ++..++..         
T Consensus        20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~-~~~~~~--~~a~sp-----Dg~~i~~~~~~~~~~~~   91 (368)
T d1mdah_          20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHS-LGAFLS--LAVAGH-----SGSDFALASTSFARSAK   91 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-EECTTC--EEEECT-----TSSCEEEEEEEETTTTS
T ss_pred             CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEE-eCCCCC--cceECC-----CCCEEEEEcccCccccc
Confidence            33444556677775422   23344  4777798888765432 222222  355555     45555543         


Q ss_pred             -eCCCcEEEEECCCCeEEEEecCccc-------cEEEEEecCCCe-EEEe-ecCCeEEEEECCCCceeeeeeccCceEEE
Q 011978          217 -SKDGDARIWDVSLRKCVICLSGHTL-------AVTCVKWGGDGV-IYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNS  286 (473)
Q Consensus       217 -s~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~~~~~~~~~-l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~  286 (473)
                       +.|+.|++||..+++.+..+..+..       ....++|++||. ++.+ ..++.+.+||+.+++....+..+......
T Consensus        92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  171 (368)
T d1mdah_          92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH  171 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE
T ss_pred             cccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc
Confidence             4577899999999988876643321       123578999984 5544 46799999999999887766543321100


Q ss_pred             EEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee-----eecCccc
Q 011978          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT-----RMTGHQQ  361 (473)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~  361 (473)
                      .                                       .....++..+.|+++..++.........     ....+..
T Consensus       172 ~---------------------------------------~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (368)
T d1mdah_         172 P---------------------------------------GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC  212 (368)
T ss_dssp             E---------------------------------------EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred             c---------------------------------------CCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccc
Confidence            0                                       0122455667788877777544332211     1223334


Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe--eCC----------ccCEEEEEEecCCCEEEEEeCC------
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF--RGH----------VGPVYQISWSADSRLLLSGSKD------  423 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~--~~h----------~~~v~~v~~sp~g~~l~s~s~D------  423 (473)
                      .+..+.+.+++..+.+.  ++.+++++...+......  ..+          .+....++++|++..++....+      
T Consensus       213 ~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~  290 (368)
T d1mdah_         213 SSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             ceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceee
Confidence            45567888888777654  355666666555433221  111          0112347889998876655332      


Q ss_pred             ---CcEEEEECCCCceeecccccCCCEEEEEEeeCCCE--EEEEeCCCcEEecc
Q 011978          424 ---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWM  472 (473)
Q Consensus       424 ---g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~--l~s~~~D~~i~~w~  472 (473)
                         ..|.+||..+++....+.. ...+.+++|||||+.  ++++..|++|++|+
T Consensus       291 ~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D  343 (368)
T d1mdah_         291 AAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             cCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence               2589999999998887763 456889999999973  46778899999997

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.14  E-value=2.3e-08  Score=88.42  Aligned_cols=229  Identities=12%  Similarity=0.083  Sum_probs=139.7

Q ss_pred             cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc-
Q 011978          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-  188 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~-  188 (473)
                      .+..++++|||+++++...+++|..|+......  .+......+.+++|++||+.+++...++.+..|+.......... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            477899999999999998999999998765433  23345567999999999998888888888888876543221111 


Q ss_pred             -CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC----------ccccEEEEEecCCCeEEEe
Q 011978          189 -LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG----------HTLAVTCVKWGGDGVIYTG  257 (473)
Q Consensus       189 -~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~l~s~  257 (473)
                       ........+.+.+.+     ++..+++.+.++.+..+|...+........          .......+.+..+..+++.
T Consensus       107 ~~~~~~~~~n~i~~~~-----~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~  181 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLS-----DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN  181 (302)
T ss_dssp             EECTTCSCEEEEEESS-----SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE
T ss_pred             cccCCccccceeEEcc-----CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeec
Confidence             112234456666554     445666767777888888776653332211          1112333444433334444


Q ss_pred             ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (473)
Q Consensus       258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (473)
                      +..+.|..++.........                                                             
T Consensus       182 ~~~~~i~~~~~~~~~~~~~-------------------------------------------------------------  200 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPGE-------------------------------------------------------------  200 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBCC-------------------------------------------------------------
T ss_pred             CCCCeEEeccccccccccc-------------------------------------------------------------
Confidence            4445554444322111000                                                             


Q ss_pred             CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEE--eeCCccCEEEEEE---ec
Q 011978          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV--FRGHVGPVYQISW---SA  412 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~---sp  412 (473)
                                      ............++++++|++.++...++.|..++.. ++....  ........++++|   ++
T Consensus       201 ----------------~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~  263 (302)
T d2p4oa1         201 ----------------PEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEG  263 (302)
T ss_dssp             ----------------CEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTT
T ss_pred             ----------------cccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCC
Confidence                            0000011123468999999988888888999999875 443222  2333346899999   67


Q ss_pred             CCCEEEEEeCC
Q 011978          413 DSRLLLSGSKD  423 (473)
Q Consensus       413 ~g~~l~s~s~D  423 (473)
                      |++.|+.++..
T Consensus       264 D~~~Lyvtt~~  274 (302)
T d2p4oa1         264 DCTAIYVVTNG  274 (302)
T ss_dssp             TTTEEEEEECT
T ss_pred             CCCEEEEECCC
Confidence            88877766544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=7.1e-08  Score=83.50  Aligned_cols=99  Identities=19%  Similarity=0.180  Sum_probs=68.1

Q ss_pred             eeeecCcccceeEEEECCCCcEEEEEECCC---cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC---CcE
Q 011978          353 KTRMTGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---STL  426 (473)
Q Consensus       353 ~~~~~~~~~~v~~v~~sp~g~~lasgs~d~---~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i  426 (473)
                      ...............++|+++.++..+.++   .+.+.+...+..  ....+.+......|||||+.|+-.+..   ..+
T Consensus       163 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l  240 (269)
T d2hqsa1         163 PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVL  240 (269)
T ss_dssp             CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEE
Confidence            334444555677789999999998876654   344455555543  233345567788999999998765543   468


Q ss_pred             EEEECCCCceeecccccCCCEEEEEEee
Q 011978          427 KVWDIRTQKLKQDLPGHADEVFAVDWSP  454 (473)
Q Consensus       427 ~iwd~~~~~~~~~~~~h~~~i~~l~~s~  454 (473)
                      +++++..+.. ..+......+...+|||
T Consensus       241 ~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         241 NLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             EEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            8999987654 44555566788899998

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.11  E-value=3.8e-09  Score=96.67  Aligned_cols=233  Identities=11%  Similarity=0.094  Sum_probs=138.4

Q ss_pred             eEEEeeCCCcEEEEECCCCeEEEEecC------------------------------ccccEEEEEecCCCe-E-EEeec
Q 011978          212 RFVSASKDGDARIWDVSLRKCVICLSG------------------------------HTLAVTCVKWGGDGV-I-YTGSQ  259 (473)
Q Consensus       212 ~~~s~s~dg~i~iwd~~~~~~~~~~~~------------------------------h~~~v~~~~~~~~~~-l-~s~~~  259 (473)
                      .|++++.+|.|++||+.+++.+..+.-                              |.-...+....+||. + ++...
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            478899999999999999887776421                              112233444456773 4 45567


Q ss_pred             CCeEEEEECCCCceeeeeec-cCceEEEEEecccce--eeeccccC------CCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978          260 DCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYA--LRTGAFDH------TGKQYSSPEEMKKAALERYNKIKGNAPE  330 (473)
Q Consensus       260 d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (473)
                      +++|.++|+.+.+..+.+.. .......++++++..  +.......      .+..+..                   ..
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~-------------------~~  153 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL-------------------DN  153 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG-------------------GG
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc-------------------cc
Confidence            88999999999988776643 355566777765432  11111000      0000000                   00


Q ss_pred             eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-----------------------------
Q 011978          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-----------------------------  381 (473)
Q Consensus       331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-----------------------------  381 (473)
                      .      -..+..+|............+  .....++|+|+|+++++.+.+                             
T Consensus       154 ~------~~~~~~iD~~t~~v~~qI~v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         154 S------YTMFTAIDAETMDVAWQVIVD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             E------EEEEEEEETTTCSEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             c------cceEEeecCccceeeEEEecC--CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence            0      012333444332222111111  235668888888888877643                             


Q ss_pred             ------------CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEE-EEeCCCcEEEEECCCCce--------eecc
Q 011978          382 ------------KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRTQKL--------KQDL  440 (473)
Q Consensus       382 ------------~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~-s~s~Dg~i~iwd~~~~~~--------~~~~  440 (473)
                                  +.+.+++....+.+..+....+ ...+.++|||++++ ++..|++|.+||+.+.+.        ...+
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~  304 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI  304 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred             ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE
Confidence                        2334444444455555555444 36789999999875 456799999999875221        0111


Q ss_pred             cccC---CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          441 PGHA---DEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       441 ~~h~---~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      .++.   -.....+|+++|+.+.|...|.+|..|.
T Consensus       305 ~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         305 VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             EeecccccCcccceecCCceEEEcccccceEEEec
Confidence            1111   1235568999999999999999999996

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.02  E-value=2.5e-07  Score=79.54  Aligned_cols=109  Identities=6%  Similarity=-0.014  Sum_probs=79.8

Q ss_pred             eeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc
Q 011978          363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG  442 (473)
Q Consensus       363 v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  442 (473)
                      ...++++|+|+++++...++.|..+|...................+++.++|+++++....+.|..++............
T Consensus       142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~  221 (260)
T d1rwia_         142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT  221 (260)
T ss_dssp             CCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCC
T ss_pred             cceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccC
Confidence            45789999999888888888899999775544333334556678999999999888887788888887765432222122


Q ss_pred             cCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          443 HADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       443 h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      .-....+++++++|+.+++-..+++|+.+
T Consensus       222 ~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         222 GLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             CCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            23456899999999988887777777654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.95  E-value=9.4e-07  Score=78.09  Aligned_cols=71  Identities=7%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             eeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCE-EEEEeCCCcEEEEECCC
Q 011978          363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRL-LLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       363 v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~-l~s~s~Dg~i~iwd~~~  433 (473)
                      ...+++.++|++.++....+.|.+||.+.++.+..+.......++++|.||++. .++.+.+|.|..+++..
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            456899999998888888899999999888877777766678899999999974 45666778888888753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.92  E-value=6e-07  Score=79.35  Aligned_cols=110  Identities=11%  Similarity=0.174  Sum_probs=76.9

Q ss_pred             ceeEEEECCCCc-----EEEEEECCCcEEEEeCCCCceEE------EeeC-CccCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011978          362 LVNHVYFSPDGQ-----WVASASFDKSIKLWNGTTGKFVA------VFRG-HVGPVYQISWSADSRLLLSGSKDSTLKVW  429 (473)
Q Consensus       362 ~v~~v~~sp~g~-----~lasgs~d~~v~lwd~~~~~~~~------~~~~-h~~~v~~v~~sp~g~~l~s~s~Dg~i~iw  429 (473)
                      ..+.++|+|++.     +.++-+..+.|..||+.....+.      .+.+ +.+....+++.++|++.++....+.|.+|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            346789988764     44455667888888865432221      2222 22345679999999988887788899999


Q ss_pred             ECCCCceeecccccCCCEEEEEEeeCCCEE-EEEeCCCcEEec
Q 011978          430 DIRTQKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW  471 (473)
Q Consensus       430 d~~~~~~~~~~~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~~w  471 (473)
                      |...++....+.......++++|.||++.| ++.+.+++|.-.
T Consensus       253 dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            998877666665555678999999999744 666677766543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.90  E-value=7e-07  Score=80.85  Aligned_cols=112  Identities=13%  Similarity=0.184  Sum_probs=72.0

Q ss_pred             cceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEee-------------------CCccCEEEEEEecCCCEEEEE
Q 011978          361 QLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFR-------------------GHVGPVYQISWSADSRLLLSG  420 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~-------------------~h~~~v~~v~~sp~g~~l~s~  420 (473)
                      ...+.++|+|+++++.... .+++|.+|+...++......                   .+......+.++|||++|+++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            3467899999999886555 57899999987654321110                   112245678999999998876


Q ss_pred             eC-CC-----cEEEEECCCC-cee-----ecccccCCCEEEEEEee-CCCEEEEE-eCCCcEEecc
Q 011978          421 SK-DS-----TLKVWDIRTQ-KLK-----QDLPGHADEVFAVDWSP-DGEKVASG-GKDRVLKLWM  472 (473)
Q Consensus       421 s~-Dg-----~i~iwd~~~~-~~~-----~~~~~h~~~i~~l~~s~-d~~~l~s~-~~D~~i~~w~  472 (473)
                      .. +.     .|..|++... ...     .........-.+++++| +|++|+.+ ..++.|.+|.
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence            42 22     3777776542 211     11111223456788998 89988666 5678999984

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=3.1e-06  Score=73.35  Aligned_cols=138  Identities=16%  Similarity=0.256  Sum_probs=92.7

Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee--CCccCEEEEE
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQIS  409 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~--~h~~~v~~v~  409 (473)
                      +++......+.+++.............+......+++.++++.+++....+.|++||. +|+.+..+.  ++......++
T Consensus       128 ~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~gia  206 (279)
T d1q7fa_         128 IVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVG  206 (279)
T ss_dssp             EEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEE
T ss_pred             EEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccc
Confidence            3344444555555543211111112334556788999999999988888899999996 466666663  3455688999


Q ss_pred             EecCCCEEEEEeC-CCcEEEEECCCCceeecccc--cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          410 WSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPG--HADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       410 ~sp~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      +.++|+.+++-+. ++.|.+|+. .++.+.++..  .......|++.|||+.+ .++.++.|++|.
T Consensus       207 vD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr  270 (279)
T d1q7fa_         207 INSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYR  270 (279)
T ss_dssp             ECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEE-EEETTTEEEEEE
T ss_pred             cccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEE
Confidence            9999997776544 446999985 4666555432  22357889999999754 556899999985

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=2.4e-06  Score=73.42  Aligned_cols=67  Identities=21%  Similarity=0.260  Sum_probs=48.8

Q ss_pred             cccCCcccEEEEEECCCCCeEEEEeCC---CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec
Q 011978          103 TIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK  170 (473)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~s~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~  170 (473)
                      .+..+...+...+|||||++||.....   ..+.+.+..++... .+..+........|+|||+.++....
T Consensus        33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~  102 (269)
T d2hqsa1          33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALS  102 (269)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeee
Confidence            334456778899999999999876543   24666676665543 34456778889999999999887654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.88  E-value=4.8e-06  Score=72.12  Aligned_cols=235  Identities=12%  Similarity=0.183  Sum_probs=135.4

Q ss_pred             EEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC-----CCcCCcEEEEEeceeccCCCCceEE-EeeCCCcEEEEE
Q 011978          153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL-----SGHKKWITGISWEPVHLNAPCRRFV-SASKDGDARIWD  226 (473)
Q Consensus       153 v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~~~~~~~-s~s~dg~i~iwd  226 (473)
                      -..++++++|+.+++-..++.|++||.+ |+.....-     .+.......+.+.+    .....++ ..+.++.|..++
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVR----NSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEET----TTTEEEEEECGGGCEEEEEC
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccc----cccccceeccCCcccccccc
Confidence            5688999999877776777889999865 33221110     01111122222211    1112232 334455676676


Q ss_pred             CCCCeEEEEe-cCccccEEEEEecCCCeEEEe-ecCCeEEEEECCCCceeeeeec--cCceEEEEEecccceeeeccccC
Q 011978          227 VSLRKCVICL-SGHTLAVTCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDH  302 (473)
Q Consensus       227 ~~~~~~~~~~-~~h~~~v~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~  302 (473)
                      .. +.....+ .........+++.+++.++.+ ...+.+.+++. +++.+..+..  +......+++.++          
T Consensus       100 ~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~----------  167 (279)
T d1q7fa_         100 QY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDK----------  167 (279)
T ss_dssp             TT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSS----------
T ss_pred             cc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccc----------
Confidence            54 4444333 234455677888877754443 44556666663 4455444321  1222233333221          


Q ss_pred             CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee--cCcccceeEEEECCCCcEEEEEEC
Q 011978          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASASF  380 (473)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~v~~sp~g~~lasgs~  380 (473)
                                                ...+++....+.+++++....  ....+  .+.......|++.|+|+++++-+.
T Consensus       168 --------------------------g~i~v~d~~~~~V~~~d~~G~--~~~~~g~~g~~~~P~giavD~~G~i~Vad~~  219 (279)
T d1q7fa_         168 --------------------------QEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINSNGEILIADNH  219 (279)
T ss_dssp             --------------------------SEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred             --------------------------eeEEeeeccccceeeeecCCc--eeeeecccccccCCcccccccCCeEEEEECC
Confidence                                      234556666778888875432  11122  234456788999999998777554


Q ss_pred             -CCcEEEEeCCCCceEEEeeC--CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978          381 -DKSIKLWNGTTGKFVAVFRG--HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ  434 (473)
Q Consensus       381 -d~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~  434 (473)
                       ++.|.+|+. +|+.+..+..  .......|++.|||++++ ++.++.|++|.....
T Consensus       220 ~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         220 NNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             SSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             CCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence             457999984 6887776643  234578999999997554 567899999987643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.88  E-value=1.5e-06  Score=76.32  Aligned_cols=234  Identities=9%  Similarity=0.001  Sum_probs=140.5

Q ss_pred             CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-
Q 011978          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-  230 (473)
Q Consensus       152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-  230 (473)
                      ++..++++|||+++++...+++|..|+......   .+......+.++++.+     +++.+++...++.+..|+.... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~---~~~~~~~~~~gla~~~-----dG~l~v~~~~~~~~~~~~~~~~~  100 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ---IHATVEGKVSGLAFTS-----NGDLVATGWNADSIPVVSLVKSD  100 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE---EEEECSSEEEEEEECT-----TSCEEEEEECTTSCEEEEEECTT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE---EEEcCCCCcceEEEcC-----CCCeEEEecCCceEEEEEecccc
Confidence            688999999999999988999999999764432   2333445677887765     5567777777788877775432 


Q ss_pred             -eEE-EEecCccccEEEEEecCCCeEE-EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCccc
Q 011978          231 -KCV-ICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY  307 (473)
Q Consensus       231 -~~~-~~~~~h~~~v~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  307 (473)
                       ... ............+.+.+++.++ +.+.++.+..+|...+........           +.               
T Consensus       101 ~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~-----------~~---------------  154 (302)
T d2p4oa1         101 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH-----------PM---------------  154 (302)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------GG---------------
T ss_pred             cceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecC-----------Cc---------------
Confidence             111 1112234456778888887644 445666777777655432111000           00               


Q ss_pred             CCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEE
Q 011978          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (473)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lw  387 (473)
                                                              .  . .............++++. +.++++.+..+.|..+
T Consensus       155 ----------------------------------------~--~-~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~  190 (302)
T d2p4oa1         155 ----------------------------------------L--A-RSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRI  190 (302)
T ss_dssp             ----------------------------------------G--S-CSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             ----------------------------------------c--c-eeeccCcccccccccccC-CceeeecCCCCeEEec
Confidence                                                    0  0 000001112344555543 3344555667788888


Q ss_pred             eCCCCceE---EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eecccccCCCEEEEEE---eeCCCEEE
Q 011978          388 NGTTGKFV---AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDW---SPDGEKVA  460 (473)
Q Consensus       388 d~~~~~~~---~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~---s~d~~~l~  460 (473)
                      +.......   ..+. .......++|.++|++.++...++.|..++...... .......-...++++|   ++|++.|.
T Consensus       191 ~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         191 PVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             EBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             ccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence            76644321   1111 123356799999999888888899999998765432 3333334456889999   77888776


Q ss_pred             EEeC
Q 011978          461 SGGK  464 (473)
Q Consensus       461 s~~~  464 (473)
                      .++.
T Consensus       270 vtt~  273 (302)
T d2p4oa1         270 VVTN  273 (302)
T ss_dssp             EEEC
T ss_pred             EECC
Confidence            5544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.76  E-value=2.6e-05  Score=68.69  Aligned_cols=102  Identities=9%  Similarity=0.033  Sum_probs=70.1

Q ss_pred             ceeEEEECCCCcEEEE-EECCCcEEEEeCCCC-ceEEE-------eeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978          362 LVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTG-KFVAV-------FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR  432 (473)
Q Consensus       362 ~v~~v~~sp~g~~las-gs~d~~v~lwd~~~~-~~~~~-------~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~  432 (473)
                      ..+.++|+|+++.|.. -+..+.|+.||+... .....       ..........+++.++|++.++....+.|.+||. 
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-  256 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-  256 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-
Confidence            3567999999986654 456788999987532 21111       1111223567999999998888888999999996 


Q ss_pred             CCceeeccc------ccCCCEEEEEEeeCCCEEEEEeC
Q 011978          433 TQKLKQDLP------GHADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       433 ~~~~~~~~~------~h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      .++.+.++.      ++...+++++|.+++..++....
T Consensus       257 ~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         257 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            466654432      34446789999998877766544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.60  E-value=2.5e-06  Score=77.08  Aligned_cols=261  Identities=8%  Similarity=0.004  Sum_probs=137.2

Q ss_pred             cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE--cCCCCCEEEEEECCCCCeEE--EEec-CCeEEEeeCCCC
Q 011978          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLV--SGSK-AGELQCWDPQTG  182 (473)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~--s~~~-dg~i~iwd~~~~  182 (473)
                      ...+.-|+|+|+++.|+++.. +.+..|.+.....+...  .........++++++++.++  ++.. .+.+..+.....
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            334556999999999987765 46777766533222211  11122344577888887443  3322 355554433211


Q ss_pred             -------------cccc---ccCCCcCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCC-CeEEE----EecCcc
Q 011978          183 -------------KPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSL-RKCVI----CLSGHT  240 (473)
Q Consensus       183 -------------~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~-~~~~~----~~~~h~  240 (473)
                                   +...   .........+.++.|.|     ++++++++. ....|.+|+... +....    ......
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-----dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-----TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECC-----CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC
Confidence                         0000   00000111245566655     556555554 345788887543 22211    112234


Q ss_pred             ccEEEEEecCCCe-E-EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          241 LAVTCVKWGGDGV-I-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       241 ~~v~~~~~~~~~~-l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      .....+.|++++. + ++...+++|.+|+...++......     +..+.+.+..                         
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~-------------------------  242 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT-----HHSFPLIPPG-------------------------  242 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-----EEEEESSCTT-------------------------
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEE-----eeeecccccc-------------------------
Confidence            5678899999984 3 456678999999986654322111     0011100000                         


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-C-----CcEEEEeCCCC
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-D-----KSIKLWNGTTG  392 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d-----~~v~lwd~~~~  392 (473)
                                                   .. ........+......+.++|||++|+++.. +     ..|..|+....
T Consensus       243 -----------------------------~~-~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~  292 (365)
T d1jofa_         243 -----------------------------IP-DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             -----------------------------CC-CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred             -----------------------------cc-ccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCC
Confidence                                         00 000001122234567899999999887742 1     23767766543


Q ss_pred             -ceEEE---e--eCCccCEEEEEEec-CCCEEEEE-eCCCcEEEEECCCC
Q 011978          393 -KFVAV---F--RGHVGPVYQISWSA-DSRLLLSG-SKDSTLKVWDIRTQ  434 (473)
Q Consensus       393 -~~~~~---~--~~h~~~v~~v~~sp-~g~~l~s~-s~Dg~i~iwd~~~~  434 (473)
                       .....   .  ........+++++| +|++|+++ ..++.|.+|++...
T Consensus       293 g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         293 GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence             22111   1  11223456799998 89987766 46789999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.6e-05  Score=74.07  Aligned_cols=75  Identities=11%  Similarity=0.038  Sum_probs=53.6

Q ss_pred             cEEEEEECCCCCeEEEEe---------CCCeEEEEeCCCCceeEE--EcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978          110 AVLSVAFSPDGRQLASGS---------GDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (473)
Q Consensus       110 ~V~~~~~sp~~~~lat~s---------~d~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd  178 (473)
                      .+....||||+++++.+.         ..+.+.+||+.++.....  .......+....|||||+.||-.. ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            566778999999987763         357889999988764322  122234455688999999998875 57888888


Q ss_pred             CCCCccc
Q 011978          179 PQTGKPS  185 (473)
Q Consensus       179 ~~~~~~~  185 (473)
                      ..++...
T Consensus       141 ~~~~~~~  147 (465)
T d1xfda1         141 HVGKQAI  147 (465)
T ss_dssp             SSSSCCE
T ss_pred             cCCCceE
Confidence            7665543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=9.9e-06  Score=69.22  Aligned_cols=111  Identities=2%  Similarity=-0.038  Sum_probs=79.7

Q ss_pred             cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc
Q 011978          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL  440 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~  440 (473)
                      .....++++++|+++++-..+..+..++..................+++++|+|+.+++...++.|..+|..........
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~  177 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP  177 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC
T ss_pred             eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeee
Confidence            45789999999998887766777878776554332222222334578999999998888888889999998765443333


Q ss_pred             cccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978          441 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW  471 (473)
Q Consensus       441 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w  471 (473)
                      .........+++.++|+.+++....+.|..+
T Consensus       178 ~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         178 FTDITAPWGIAVDEAGTVYVTEHNTNQVVKL  208 (260)
T ss_dssp             CSSCCSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             ccccCCCccceeeeeeeeeeeecCCCEEEEE
Confidence            3344567899999999988888777777654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=0.00012  Score=67.99  Aligned_cols=294  Identities=13%  Similarity=0.136  Sum_probs=152.8

Q ss_pred             EECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcC---CCCCEEEEEECCCCCeEEEEe---------cCCeEEEeeCCCC
Q 011978          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG---HKNWVLCIAWSADGKHLVSGS---------KAGELQCWDPQTG  182 (473)
Q Consensus       115 ~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~dg~~l~s~~---------~dg~i~iwd~~~~  182 (473)
                      .|.+++.++.. ..+|.|.+||+.++.....+..   ....+....||||+++|+...         ..+.+.++|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            57778776543 4578899999988765433332   223567788999999988764         3567899999887


Q ss_pred             cccccc-CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccE-----------------
Q 011978          183 KPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAV-----------------  243 (473)
Q Consensus       183 ~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v-----------------  243 (473)
                      ...... .......+....|+|     ++..++-.. ++.+.+.+...+..+.... +....|                 
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSP-----DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGP-----KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCS-----STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ceeeccCccCCccccceeeecc-----CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence            643211 112222333345555     566666544 5678888776655443222 221111                 


Q ss_pred             EEEEecCCCe-EEEe-ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978          244 TCVKWGGDGV-IYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (473)
Q Consensus       244 ~~~~~~~~~~-l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
                      ..+-|+|||. |+.. -.+..+..+.+....     ......+..+...                               
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp-------------------------------  219 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYP-------------------------------  219 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECC-------------------------------
T ss_pred             ceEEECCCCCeEEEEEecccccceeeccccc-----ccccceeeeeecc-------------------------------
Confidence            3566888883 4433 234444444322100     0000000000000                               


Q ss_pred             hcccCCCCceEEEecCCceEEEEeCCCCCCCeee-----ecCcccceeEEEECCCCcEEEEEEC-C---CcEEEEeCCCC
Q 011978          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-----MTGHQQLVNHVYFSPDGQWVASASF-D---KSIKLWNGTTG  392 (473)
Q Consensus       322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~v~~v~~sp~g~~lasgs~-d---~~v~lwd~~~~  392 (473)
                        ..+..       .....+.++|+.........     .......+..+.|+|++++++.... +   ..+.++|..+|
T Consensus       220 --~~G~~-------np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg  290 (465)
T d1xfda1         220 --KAGSE-------NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (465)
T ss_dssp             --BTTSC-------CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             --ccCCC-------CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCC
Confidence              00000       00123556665433222111     1122335778999999987766433 2   25888999999


Q ss_pred             ceEEEeeCC-ccCE----EEEEEecCCCEEE--EEe-CCC--cEEEEECC------CCceeecccccCCCEEEE-EEeeC
Q 011978          393 KFVAVFRGH-VGPV----YQISWSADSRLLL--SGS-KDS--TLKVWDIR------TQKLKQDLPGHADEVFAV-DWSPD  455 (473)
Q Consensus       393 ~~~~~~~~h-~~~v----~~v~~sp~g~~l~--s~s-~Dg--~i~iwd~~------~~~~~~~~~~h~~~i~~l-~~s~d  455 (473)
                      ++...+..+ .+.|    ....|+|||+.++  ..+ .+|  .++..++.      .++....+....-.|..+ .|+++
T Consensus       291 ~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~  370 (465)
T d1xfda1         291 VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK  370 (465)
T ss_dssp             CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT
T ss_pred             cEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCC
Confidence            876655432 2222    3467899998543  222 333  34444332      223333444333345554 57777


Q ss_pred             CCEEE
Q 011978          456 GEKVA  460 (473)
Q Consensus       456 ~~~l~  460 (473)
                      ++.+.
T Consensus       371 ~~~vy  375 (465)
T d1xfda1         371 GNKIY  375 (465)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            76654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.18  E-value=0.00011  Score=62.86  Aligned_cols=68  Identities=15%  Similarity=0.243  Sum_probs=49.7

Q ss_pred             EECCC--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec-C-----CeEEEeeCCCCcc
Q 011978          115 AFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-A-----GELQCWDPQTGKP  184 (473)
Q Consensus       115 ~~sp~--~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~-d-----g~i~iwd~~~~~~  184 (473)
                      ..+||  |+++|..+. +.|.+.|+.++... .+..+...+...+|||||+.||.... +     ..|.+++..+++.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            45788  999887654 56888899887754 45667777899999999999986542 2     2477777776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.10  E-value=0.0022  Score=55.13  Aligned_cols=97  Identities=13%  Similarity=0.087  Sum_probs=66.5

Q ss_pred             eeEEEECCCCcEEEEE-ECCCcEEEEeCCCC------ce--EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978          363 VNHVYFSPDGQWVASA-SFDKSIKLWNGTTG------KF--VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT  433 (473)
Q Consensus       363 v~~v~~sp~g~~lasg-s~d~~v~lwd~~~~------~~--~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~  433 (473)
                      .+.++|+++++.+..+ +..+.|..+++...      +.  ...+.+..+....+++..+|++.++.-..+.|..||. .
T Consensus       150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~  228 (295)
T d2ghsa1         150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-D  228 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-T
T ss_pred             cceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-C
Confidence            4678999999865544 55678888876421      11  1222334456788999999998877767788999996 4


Q ss_pred             CceeecccccCCCEEEEEEe-eCCCEEE
Q 011978          434 QKLKQDLPGHADEVFAVDWS-PDGEKVA  460 (473)
Q Consensus       434 ~~~~~~~~~h~~~i~~l~~s-~d~~~l~  460 (473)
                      ++.+..+.--...+++++|- +|.+.|.
T Consensus       229 G~~~~~i~lP~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         229 GNHIARYEVPGKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             CCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             CcEeeEecCCCCceEEEEEeCCCCCEEE
Confidence            66666655444578999996 6766554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.02  E-value=0.0027  Score=55.34  Aligned_cols=108  Identities=10%  Similarity=0.090  Sum_probs=66.7

Q ss_pred             eeEEEECCCCcEEEEEECC------CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEE-EeCCCcEEEEECCCC-
Q 011978          363 VNHVYFSPDGQWVASASFD------KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS-GSKDSTLKVWDIRTQ-  434 (473)
Q Consensus       363 v~~v~~sp~g~~lasgs~d------~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s-~s~Dg~i~iwd~~~~-  434 (473)
                      .+.+++.|+|++.++....      +.+..++...+. +..+.......+.++|+||++.|.. -+..+.|+.||+... 
T Consensus       132 ~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g  210 (319)
T d2dg1a1         132 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG  210 (319)
T ss_dssp             EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCC
Confidence            5667888888866654321      235555544333 2222223345688999999986644 456789999987532 


Q ss_pred             cee--------ecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          435 KLK--------QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       435 ~~~--------~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ...        ....+. ..--.+++.++|+..++....+.|.+|.
T Consensus       211 ~~~~~~~~~~~~~~~~~-~~PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         211 VTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             SSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             ceeccccceeeeccCCc-cceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence            111        111111 2245788899999888888888888764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.77  E-value=0.0019  Score=61.20  Aligned_cols=77  Identities=17%  Similarity=0.103  Sum_probs=44.7

Q ss_pred             CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC-CCEEEEEEeeCCCEE
Q 011978          382 KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGEKV  459 (473)
Q Consensus       382 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~d~~~l  459 (473)
                      |.|.-+|+.+|+.+-....-. +..+=..+-.+.+++.|+.||.++.+|.++++.+-+..-.. ..-.-+.|..||+..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            356667777777664443111 11100112245677789999999999999999874432111 111225667788743

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.73  E-value=0.0054  Score=57.87  Aligned_cols=79  Identities=10%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCC-CEEEEEEeeCCC-EE
Q 011978          382 KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD-EVFAVDWSPDGE-KV  459 (473)
Q Consensus       382 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~-~i~~l~~s~d~~-~l  459 (473)
                      |.+.-||+.+|+.+-.+... .+..+=..+-.|.+++.|+.||.++.+|.++++.+-+..-... .-.-+.|..||+ +|
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            45777888888876554321 1111112233566888899999999999999998754332111 111245667886 44


Q ss_pred             EE
Q 011978          460 AS  461 (473)
Q Consensus       460 ~s  461 (473)
                      +.
T Consensus       517 ~v  518 (560)
T d1kv9a2         517 AI  518 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.70  E-value=0.012  Score=50.40  Aligned_cols=225  Identities=12%  Similarity=0.077  Sum_probs=123.2

Q ss_pred             EEEECCCCCeEEEE-eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCC
Q 011978          113 SVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG  191 (473)
Q Consensus       113 ~~~~sp~~~~lat~-s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  191 (473)
                      ...|++....|.-. -..+.|..||..++.....  .....+.++++.++|.++++ +. ..+.++|..+++........
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~--~~~~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVH--ALPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--ECSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE--ECCCCcEEEEEecCCCEEEE-Ee-CccEEeecccceeeEEeeee
Confidence            35677755555443 3668899999988764322  12446889999999876665 44 46889999888643211111


Q ss_pred             c---CCcEEEEEeceeccCCCCceEEEeeC----CCcEEEEECCCCeEEEEecCccccEEEEEecCCCe--EEEeecCCe
Q 011978          192 H---KKWITGISWEPVHLNAPCRRFVSASK----DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV--IYTGSQDCT  262 (473)
Q Consensus       192 ~---~~~v~~i~~~~~~~~~~~~~~~s~s~----dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~  262 (473)
                      .   ...++.+...|     .+...++...    .+.-.+|.+..++......+ ...-..+.|++++.  +++.+..+.
T Consensus        98 ~~~~~~~~nd~~vd~-----~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~  171 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHP-----SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNR  171 (295)
T ss_dssp             TTCTTEEEEEEEECT-----TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             cCCCcccceeeEECC-----CCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccce
Confidence            1   11234443332     3333332211    12334455444443332222 12234566666552  334444555


Q ss_pred             EEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (473)
Q Consensus       263 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  342 (473)
                      |..+++........                                                            ....+ 
T Consensus       172 I~~~~~d~~~~~~~------------------------------------------------------------~~~~~-  190 (295)
T d2ghsa1         172 LMRVPLDARTGLPT------------------------------------------------------------GKAEV-  190 (295)
T ss_dssp             EEEEEBCTTTCCBS------------------------------------------------------------SCCEE-
T ss_pred             eeEeeecccccccc------------------------------------------------------------cceEE-
Confidence            55555421100000                                                            00000 


Q ss_pred             EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe-cCCCEEEE
Q 011978          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLS  419 (473)
Q Consensus       343 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~g~~l~s  419 (473)
                                .....+.......+++..+|++.++.-..+.|..||. .|+.+..+.-....+++++|- ||.+.|+.
T Consensus       191 ----------~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         191 ----------FIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             ----------EEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             ----------EeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEE
Confidence                      0001122234667889999998888777888999995 688888887655679999996 66665543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.65  E-value=0.0068  Score=57.55  Aligned_cols=76  Identities=20%  Similarity=0.212  Sum_probs=45.7

Q ss_pred             CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCC-CEEEEEEeeCCCE
Q 011978          382 KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD-EVFAVDWSPDGEK  458 (473)
Q Consensus       382 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~-~i~~l~~s~d~~~  458 (473)
                      |.|.-||..+|+.+-.... ..+..+=..+-.|.+++.|+.||.++.+|.++++.+-+..-... .-.-+.|..||+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence            4577778888876544321 11111111233567888899999999999999998754432111 1112456678874

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.49  E-value=0.00038  Score=59.35  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=66.6

Q ss_pred             EECCC--CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeC-CC-----cEEEEECCCCceee
Q 011978          367 YFSPD--GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK-DS-----TLKVWDIRTQKLKQ  438 (473)
Q Consensus       367 ~~sp~--g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-Dg-----~i~iwd~~~~~~~~  438 (473)
                      ..+||  |+.+|..+. +.|.+.|+.+++.. .+..+.+.+...+|||||+.||-.+. ++     .|.+++..+++..+
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  999887654 56888899988764 45556677899999999999886542 22     37777877776543


Q ss_pred             cccc------cCCCEEEEEEeeCCCEEEEEeC
Q 011978          439 DLPG------HADEVFAVDWSPDGEKVASGGK  464 (473)
Q Consensus       439 ~~~~------h~~~i~~l~~s~d~~~l~s~~~  464 (473)
                      .-..      .........|+|||+.|+....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            2111      1123457889999999887543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.47  E-value=0.01  Score=56.10  Aligned_cols=110  Identities=17%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCC----------CCE-EEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc-
Q 011978          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHK----------NWV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-  188 (473)
Q Consensus       121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~----------~~v-~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~-  188 (473)
                      ..|+.++.++.|.-+|.++++.+.++....          ..+ ..+.+.  +..++.++.|+.+.-.|.++|+..... 
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence            456667778888889999998877653110          011 112221  346777888899988899888764321 


Q ss_pred             CC-CcCCcEEEEEeceeccCCCCceEEEee------CCCcEEEEECCCCeEEEEe
Q 011978          189 LS-GHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICL  236 (473)
Q Consensus       189 ~~-~~~~~v~~i~~~~~~~~~~~~~~~s~s------~dg~i~iwd~~~~~~~~~~  236 (473)
                      .. .....+. +.-.|..   ....++.++      ..|.|.-+|..+++.+..+
T Consensus       156 ~~~~~~~~~~-~~~~p~v---~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         156 TFEGQKGSLT-ITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             TTTTCCSSCB-CCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CccCCcceEE-eecceEE---EeccEEEeeccccccccceEEEEecCCccceeee
Confidence            11 1111110 0001111   012344443      2467999999999988764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.22  E-value=0.085  Score=49.63  Aligned_cols=76  Identities=21%  Similarity=0.407  Sum_probs=48.9

Q ss_pred             CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCC-CEEEEEEeeCCCE
Q 011978          382 KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD-EVFAVDWSPDGEK  458 (473)
Q Consensus       382 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~-~i~~l~~s~d~~~  458 (473)
                      |.+.-+|+.+|+.+-.++.+. ++.+=..+..|.+++.|+.||.++.+|.++++.+-+.+-... .-.-+.|..||+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            567778888888776655332 222212345677888899999999999999998754432111 1112567788864

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.20  E-value=0.064  Score=47.33  Aligned_cols=115  Identities=16%  Similarity=0.174  Sum_probs=66.8

Q ss_pred             EEEECCCCCeEEEEeCC-----C------eEEEEeCCCCce--eE-EEcCCCCCEEEEEECCCCCeEEEEecC-CeEEEe
Q 011978          113 SVAFSPDGRQLASGSGD-----T------TVRLWDLNTQTP--MF-KCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCW  177 (473)
Q Consensus       113 ~~~~sp~~~~lat~s~d-----~------~i~iwd~~~~~~--~~-~~~~~~~~v~~l~~s~dg~~l~s~~~d-g~i~iw  177 (473)
                      ......+|+.++.|+.+     +      .+.+||..+++-  .. ....+.......++.+||+.++.|+.+ ..+.+|
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            34455678888887742     1      378999987642  11 122343344566788999999888765 689999


Q ss_pred             eCCCCccccccC-CCcCCcEEEEEeceeccCCCCceEEEeeCC------CcEEEEECCCCeEE
Q 011978          178 DPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRKCV  233 (473)
Q Consensus       178 d~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d------g~i~iwd~~~~~~~  233 (473)
                      |..+........ ........ ..     ...++..++.++.+      ..+.+||..+.+-.
T Consensus       104 d~~~~~w~~~~~~~~~r~~~~-~~-----~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVARGYQS-SA-----TMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             EGGGTEEEECCCCSSCCSSCE-EE-----ECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             cCccCcccccccccccccccc-ee-----eecCCceeeeccccccccccceeeeecCCCCcee
Confidence            987765322111 10111111 11     11244566666542      36899998877543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.15  E-value=0.51  Score=43.97  Aligned_cols=109  Identities=14%  Similarity=0.055  Sum_probs=61.5

Q ss_pred             CeEEEEecCCeEEEeeCCCCccccccCCC------cC---CcEE-EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE
Q 011978          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSG------HK---KWIT-GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC  232 (473)
Q Consensus       163 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~---~~v~-~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~  232 (473)
                      ..|+.++.++.|.-+|.++|+.+-..-..      +.   ..+. .+..       ...+++.++.|+.+.-.|..+++.
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~v~~~t~~g~l~alda~tG~~  150 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-------WKGKVYVGAWDGRLIALDAATGKE  150 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-------ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceE-------ECCcEEEEecccceeeeccccccc
Confidence            35667777888888888888754321100      00   0000 0000       123566778888888889999988


Q ss_pred             EEEecC--cc-ccE--EEEEecCCCeEEEeec------CCeEEEEECCCCceeeeee
Q 011978          233 VICLSG--HT-LAV--TCVKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELK  278 (473)
Q Consensus       233 ~~~~~~--h~-~~v--~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~  278 (473)
                      +.....  +. ..+  +....--++.++.++.      .|.|+-+|..+|+.+..+.
T Consensus       151 ~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         151 VWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             EEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             eecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence            765432  11 111  1100001445555432      4689999999999887653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.31  Score=40.21  Aligned_cols=217  Identities=9%  Similarity=-0.025  Sum_probs=111.6

Q ss_pred             cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEE-EeecCCeEEEEECCCCc
Q 011978          195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIY-TGSQDCTIKVWETTQGK  272 (473)
Q Consensus       195 ~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~-s~~~d~~i~~wd~~~~~  272 (473)
                      .+.+++|.+.    ....+.+-..++.|...++...............+.+++++. .+.|+ +-...+.|.+.++....
T Consensus        37 ~~~~ld~D~~----~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          37 VIIGLAFDCV----DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEETT----TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cEEEEEEEeC----CCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            3455555432    222344445567777777765544433433334567777763 34554 55567789888876543


Q ss_pred             eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC--CceEEEEeCCCCC
Q 011978          273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--DFTMFLWEPAVSK  350 (473)
Q Consensus       273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~  350 (473)
                      ....+.........+++.|....                                   .+.+-..  ...|.--++... 
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~-----------------------------------ly~t~~~~~~~~I~r~~~dG~-  156 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGN-----------------------------------LYWTDWNRDNPKIETSHMDGT-  156 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTE-----------------------------------EEEEECCSSSCEEEEEETTSC-
T ss_pred             EEEEecccccCCcEEEEecccCc-----------------------------------EEEeecCCCCcEEEEecCCCC-
Confidence            22212222233455555543211                                   1111111  111211122111 


Q ss_pred             CCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE-eCCCcEEE
Q 011978          351 QPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG-SKDSTLKV  428 (473)
Q Consensus       351 ~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s~Dg~i~i  428 (473)
                      .........-.....+++++.++.|.... ..+.|...|+........+.+-. ...++++.  +.+|... ...+.|..
T Consensus       157 ~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~  233 (263)
T d1npea_         157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIA  233 (263)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             CceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEE
Confidence            11111222224567899998877776654 56789888887655444455433 23577775  4445444 45678888


Q ss_pred             EECCCCceeeccc-ccCCCEEEEEEee
Q 011978          429 WDIRTQKLKQDLP-GHADEVFAVDWSP  454 (473)
Q Consensus       429 wd~~~~~~~~~~~-~h~~~i~~l~~s~  454 (473)
                      .|..+++....+. ......+++...+
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         234 MDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EECCCCccceEECCCCCCCcceEEEeC
Confidence            8998877665432 3333444555443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.98  E-value=0.5  Score=42.17  Aligned_cols=63  Identities=27%  Similarity=0.421  Sum_probs=41.6

Q ss_pred             CCcccEEEEEECCCCCeEEEE-e----CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe
Q 011978          106 GHTEAVLSVAFSPDGRQLASG-S----GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS  169 (473)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~-s----~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~  169 (473)
                      ++.-.+....+|||++++|.+ +    .-..++++|+.+++.+-.... ......++|++|++.|+-..
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEE
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEE
Confidence            444455667899999998854 2    224799999999875432111 11124578999999887544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.59  E-value=1  Score=37.32  Aligned_cols=182  Identities=8%  Similarity=0.077  Sum_probs=107.4

Q ss_pred             ecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCC
Q 011978          248 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (473)
Q Consensus       248 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (473)
                      .+|...+++--...++.+||+++.+.++.+.-.+.-+.=--+                                      
T Consensus        70 MhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWi--------------------------------------  111 (327)
T d1utca2          70 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--------------------------------------  111 (327)
T ss_dssp             ECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEES--------------------------------------
T ss_pred             cCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEec--------------------------------------
Confidence            456555444434678999999998877765543321110000                                      


Q ss_pred             CCceEEEecCCceEEEEeCCCCCCCeeeecCcc----cceeEEEECCCCcEEEEEE---C----CCcEEEEeCCCCceEE
Q 011978          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ----QLVNHVYFSPDGQWVASAS---F----DKSIKLWNGTTGKFVA  396 (473)
Q Consensus       328 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~v~~v~~sp~g~~lasgs---~----d~~v~lwd~~~~~~~~  396 (473)
                      .++.|+- =.+..++-|++.....|.+.+..|.    ..|..-..+++.++++..+   .    .|.+.||+.+... .+
T Consensus       112 s~~~L~l-VT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ  189 (327)
T d1utca2         112 SLNTVAL-VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQ  189 (327)
T ss_dssp             SSSEEEE-ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EE
T ss_pred             CCCEEEE-EcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cc
Confidence            0112221 1256788998866555655544443    3566677788888876543   1    3678888765431 11


Q ss_pred             EeeCCc------------------------------------------------------------cCEEEEEEecCCCE
Q 011978          397 VFRGHV------------------------------------------------------------GPVYQISWSADSRL  416 (473)
Q Consensus       397 ~~~~h~------------------------------------------------------------~~v~~v~~sp~g~~  416 (473)
                      .++||.                                                            +.-.++..|+.-..
T Consensus       190 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygi  269 (327)
T d1utca2         190 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV  269 (327)
T ss_dssp             EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTE
T ss_pred             cccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCE
Confidence            111111                                                            11233344444446


Q ss_pred             EEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEE
Q 011978          417 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK  469 (473)
Q Consensus       417 l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~  469 (473)
                      +..-+.-|.|++||+.++..+..-+-..+.|...+-..+..-++....+|.+.
T Consensus       270 iyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         270 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            67778889999999999988765544566777666566666777777887664

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.57  E-value=0.24  Score=46.17  Aligned_cols=60  Identities=12%  Similarity=0.216  Sum_probs=41.7

Q ss_pred             CcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeec
Q 011978          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  279 (473)
                      |.+.-||+.+++.+....-........-....++++.|+.||.++-+|..+|+.+.+++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            567888999998876543211111111112467888999999999999999999987654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.24  E-value=0.27  Score=44.08  Aligned_cols=97  Identities=19%  Similarity=0.229  Sum_probs=62.2

Q ss_pred             eeEEEECCCCcEEEEEE-CCC----cEEEEeCCCCceEE-EeeCCccCEEEEEEecCCCEEEEEeCC-------------
Q 011978          363 VNHVYFSPDGQWVASAS-FDK----SIKLWNGTTGKFVA-VFRGHVGPVYQISWSADSRLLLSGSKD-------------  423 (473)
Q Consensus       363 v~~v~~sp~g~~lasgs-~d~----~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp~g~~l~s~s~D-------------  423 (473)
                      +..+++|||++++|.+- .+|    .++++|+.+++.+. .+..  .....++|++|++.|+-...|             
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            44568899999998653 233    69999999998764 2221  112468899999977654332             


Q ss_pred             ---CcEEEEECCCCce----eecccccCCCEEEEEEeeCCCEEEE
Q 011978          424 ---STLKVWDIRTQKL----KQDLPGHADEVFAVDWSPDGEKVAS  461 (473)
Q Consensus       424 ---g~i~iwd~~~~~~----~~~~~~h~~~i~~l~~s~d~~~l~s  461 (473)
                         ..|+.+.+.+...    +.........+..+..++|+++++.
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence               2477777766432    2222222234667788999998863

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.43  E-value=1  Score=41.74  Aligned_cols=60  Identities=18%  Similarity=0.238  Sum_probs=40.5

Q ss_pred             CcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeec
Q 011978          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       220 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  279 (473)
                      |.+.-+|+.+++.+.............-...+++++.|+.|+.++-+|.++|+.+.+++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence            467778888888775543111111111112467888999999999999999999987754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.41  E-value=1.7  Score=35.86  Aligned_cols=237  Identities=11%  Similarity=0.137  Sum_probs=124.4

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK  193 (473)
Q Consensus       114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  193 (473)
                      .-.+|..+.||--+ ..++.|+|++++.++..+.-.+ .|.--.|-.+ +.|+-.+ +..|+-|+++........+..|.
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence            44678888887665 4589999999998877765444 3444556544 3444443 46899999854322211222221


Q ss_pred             ----CcEEEEEeceeccCCCCceEEEe-------eCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC---eEEE-ee
Q 011978          194 ----KWITGISWEPVHLNAPCRRFVSA-------SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYT-GS  258 (473)
Q Consensus       194 ----~~v~~i~~~~~~~~~~~~~~~s~-------s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s-~~  258 (473)
                          ..|..  +.   .+.+..+++..       +-.|.+.+|..+.+. -+.+.||...-..+...++.   .+++ +.
T Consensus       144 ~L~~~QIIn--Y~---~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~  217 (327)
T d1utca2         144 SLAGCQIIN--YR---TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAV  217 (327)
T ss_dssp             GGTTCEEEE--EE---ECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred             cccCceEEE--EE---ECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEE
Confidence                11111  11   11233333321       123677888876543 44577887655555444322   1221 11


Q ss_pred             ---cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978          259 ---QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (473)
Q Consensus       259 ---~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  335 (473)
                         ..+.+.+.++.....-                             ...+                            
T Consensus       218 r~~~~~kLhIiEig~~~~g-----------------------------~~~f----------------------------  240 (327)
T d1utca2         218 RGQAGGKLHIIEVGTPPTG-----------------------------NQPF----------------------------  240 (327)
T ss_dssp             EETTEEEEEEEECSCCCTT-----------------------------CCCC----------------------------
T ss_pred             CCCCCcEEEEEEcCCCccC-----------------------------CCCC----------------------------
Confidence               1123333333211000                             0000                            


Q ss_pred             cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR  415 (473)
Q Consensus       336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~  415 (473)
                          .-+.-|+...      .....+-.-++.+|+....+..-+.-|.+++||++++.++..-+-...+|..-+-..+..
T Consensus       241 ----~kk~vdi~fp------pea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~  310 (327)
T d1utca2         241 ----PKKAVDVFFP------PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA  310 (327)
T ss_dssp             ----CCEEEECCCC------TTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTT
T ss_pred             ----cceeEEEECC------ccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCc
Confidence                0000000000      000112345678888888888889999999999999999887666666666544444444


Q ss_pred             EEEEEeCCCcEE
Q 011978          416 LLLSGSKDSTLK  427 (473)
Q Consensus       416 ~l~s~s~Dg~i~  427 (473)
                      -+++...+|.|.
T Consensus       311 Gi~~VNr~GqVl  322 (327)
T d1utca2         311 GIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEETTSEEE
T ss_pred             eEEEECCCCeEE
Confidence            455555666543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.92  E-value=1.7  Score=37.94  Aligned_cols=91  Identities=9%  Similarity=-0.004  Sum_probs=54.5

Q ss_pred             EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEEC--CCCcEEEEEECCC------------------cEEEEeCCC
Q 011978          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS--PDGQWVASASFDK------------------SIKLWNGTT  391 (473)
Q Consensus       332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s--p~g~~lasgs~d~------------------~v~lwd~~~  391 (473)
                      ++.-..+.++..-|+...+............+..+...  |+-.|++.++.+.                  .+.++|..+
T Consensus       103 FVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~t  182 (459)
T d1fwxa2         103 FMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK  182 (459)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTT
T ss_pred             EEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCC
Confidence            45555666777777654432222222223345555554  4566888777632                  256788888


Q ss_pred             CceEEEeeCCccCEEEEEEecCCCEEEEEeCC
Q 011978          392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKD  423 (473)
Q Consensus       392 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D  423 (473)
                      .+........ +....++++|||+++++.+.+
T Consensus       183 m~V~~QV~V~-g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         183 WEVAWQVLVS-GNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             TEEEEEEEES-SCCCCEEECSSSSEEEEEESC
T ss_pred             ceEEEEeeeC-CChhccccCCCCCEEEEEecc
Confidence            8766544322 235578999999999887743

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.73  E-value=1.7  Score=33.80  Aligned_cols=159  Identities=13%  Similarity=0.203  Sum_probs=90.7

Q ss_pred             ccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978          241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (473)
Q Consensus       241 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (473)
                      ..|.+++.......++|+......+|-++.|++.+...... .-|..+  ..++..-.+.+                   
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI--~~d~I~G~g~~-------------------  162 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI--RGDLIAGLGFF-------------------  162 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE--ETTEEEEEEEE-------------------
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec--cCCeEEEEeee-------------------
Confidence            67889998888889999988888999888776543221110 111111  11111100101                   


Q ss_pred             hhhcccCCCCceEEEecC-CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC----CCcEEEEeCCCCce
Q 011978          320 RYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF----DKSIKLWNGTTGKF  394 (473)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~----d~~v~lwd~~~~~~  394 (473)
                           .+ .+..++++.. .|.++++++.            .+.++...+.++.+. +++-.    ...| -+|+++++.
T Consensus       163 -----~g-~~~sfF~adl~SG~lri~tpk------------eGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~y  222 (313)
T d2hu7a1         163 -----GG-GRVSLFTSNLSSGGLRVFDSG------------EGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSV  222 (313)
T ss_dssp             -----ET-TEEEEEEEETTTEEEEEECCS------------SEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCE
T ss_pred             -----cC-CcceEEEEecccCCEEEecCC------------CCcccceeEccCcee-eeccCCCCceEEE-EEecccCce
Confidence                 11 1222444444 7778877643            345677777777665 44322    2234 458887764


Q ss_pred             EEE-eeC------CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc
Q 011978          395 VAV-FRG------HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG  442 (473)
Q Consensus       395 ~~~-~~~------h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  442 (473)
                      -.. +..      ..-.|+=+-+.|++++++.+-.||.-++|.  .++.+...+|
T Consensus       223 erve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p~G  275 (313)
T d2hu7a1         223 EDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEAPQG  275 (313)
T ss_dssp             EECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECCCSS
T ss_pred             eeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEecCCCC
Confidence            332 111      112355566899999989999999999985  3445444443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.36  E-value=0.62  Score=40.50  Aligned_cols=100  Identities=17%  Similarity=0.227  Sum_probs=63.9

Q ss_pred             EEEECCCCcEEEEEECCC-----------cEEEEeCCCCceEE--E-eeCCccCEEEEEEecCCCEEEEEeCC-CcEEEE
Q 011978          365 HVYFSPDGQWVASASFDK-----------SIKLWNGTTGKFVA--V-FRGHVGPVYQISWSADSRLLLSGSKD-STLKVW  429 (473)
Q Consensus       365 ~v~~sp~g~~lasgs~d~-----------~v~lwd~~~~~~~~--~-~~~h~~~v~~v~~sp~g~~l~s~s~D-g~i~iw  429 (473)
                      ..+...+|++++.|+.+.           .+.+||..+++...  . -..|.......++.++|++++.|+.+ ..+.+|
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            344556888888887531           37789998875422  1 22233334466788999999988765 589999


Q ss_pred             ECCCCceee--cccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978          430 DIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       430 d~~~~~~~~--~~~~h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                      |..+..-..  .+.... .--.++..+||+.++.++.+
T Consensus       104 d~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             EGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCC
T ss_pred             cCccCcccccccccccc-cccceeeecCCceeeecccc
Confidence            998754322  222111 12245667899999988764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.91  E-value=3.4  Score=33.56  Aligned_cols=190  Identities=11%  Similarity=0.018  Sum_probs=100.9

Q ss_pred             ccEEEEEecC-CCeEEEe-ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978          241 LAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (473)
Q Consensus       241 ~~v~~~~~~~-~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (473)
                      ..+..++|+. ++.++.+ ..++.|+..++..+.....+.........+++...                          
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~--------------------------   89 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL--------------------------   89 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT--------------------------
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc--------------------------
Confidence            3466677764 3455544 55677887777654333222222223444444321                          


Q ss_pred             hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-Cc--EEEEeCCCCceE
Q 011978          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-KS--IKLWNGTTGKFV  395 (473)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-~~--v~lwd~~~~~~~  395 (473)
                               .....++-...+.|...++..... ..........+..++++|...+|...... +.  |.--++......
T Consensus        90 ---------~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~  159 (263)
T d1npea_          90 ---------GRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (263)
T ss_dssp             ---------TTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             ---------CCeEEEeccCCCEEEEEecCCceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence                     011223444556666666543322 22222333567899999977777654332 23  433355433333


Q ss_pred             EEeeCCccCEEEEEEecCCCEEEEE-eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe-CCCcEE
Q 011978          396 AVFRGHVGPVYQISWSADSRLLLSG-SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLK  469 (473)
Q Consensus       396 ~~~~~h~~~v~~v~~sp~g~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~  469 (473)
                      ...........++++.+.++.|..+ ...+.|...|+........+.+.. .-.++++.  +.+|...+ ..+.|.
T Consensus       160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~  232 (263)
T d1npea_         160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVI  232 (263)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEE
Confidence            3333334567899999888777665 456789989987654433333322 23567664  44554443 334443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.52  E-value=1.3  Score=39.59  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=39.2

Q ss_pred             cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee--------CCccCEEEEEEecC
Q 011978          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--------GHVGPVYQISWSAD  413 (473)
Q Consensus       361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~--------~h~~~v~~v~~sp~  413 (473)
                      ...++|+|.|||+++++--.+|.|++++..+++......        .-.+....++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            356799999999998887667999999987775432221        12356889999995

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.24  E-value=5.3  Score=34.77  Aligned_cols=67  Identities=13%  Similarity=0.112  Sum_probs=44.8

Q ss_pred             EEEEEecCCCEEEEEe-CCCcEEEEECCCCce--------eeccc---ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978          406 YQISWSADSRLLLSGS-KDSTLKVWDIRTQKL--------KQDLP---GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  472 (473)
Q Consensus       406 ~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~--------~~~~~---~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~  472 (473)
                      ..+..+|||+++++++ .+.++-++|++.-..        ...+.   ...-.-..-+|+.+|....|.=-|.+|--|+
T Consensus       278 HGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEe
Confidence            4588999999988776 588999999864211        00110   1111235678888887666666888888885

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.72  E-value=5.2  Score=33.86  Aligned_cols=33  Identities=12%  Similarity=0.195  Sum_probs=25.8

Q ss_pred             ccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCC
Q 011978          402 VGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQ  434 (473)
Q Consensus       402 ~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~  434 (473)
                      ....+.++++||+++|+.+. ..+.|++|++...
T Consensus       205 l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         205 FDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            45688999999998776654 5778999998653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.19  E-value=8.3  Score=35.50  Aligned_cols=68  Identities=10%  Similarity=0.155  Sum_probs=45.0

Q ss_pred             ceEEEeeCCCcEEEEECCCCeEEEEecCcc----ccEEEEEecCCCeEEEeec------CCeEEEEECCCCceeeeee
Q 011978          211 RRFVSASKDGDARIWDVSLRKCVICLSGHT----LAVTCVKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELK  278 (473)
Q Consensus       211 ~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~  278 (473)
                      .+++.++.|+.+.-.|.++++.+..+....    ..++..-.--++.++.+..      .|.|+-+|+.+|+++.++.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            467788889999999999999887663211    1111100011455665543      4899999999999987754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.34  E-value=3.8  Score=35.28  Aligned_cols=99  Identities=17%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc
Q 011978          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP  441 (473)
Q Consensus       362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~  441 (473)
                      .|..++|+-|  .|+... ++.+..++..+-........-..++.++.++|.  .++....+|.+.++++..++......
T Consensus        88 ~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEEe-CCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            4777899754  455543 456777777664443333334557888888875  45666778999999998765432211


Q ss_pred             c-----cCCCEEEEEEeeCCCEEEEEeCC
Q 011978          442 G-----HADEVFAVDWSPDGEKVASGGKD  465 (473)
Q Consensus       442 ~-----h~~~i~~l~~s~d~~~l~s~~~D  465 (473)
                      +     -...+.+++|++.|+.++.+..+
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence            1     12567889999999888887544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.18  E-value=2.3  Score=39.37  Aligned_cols=61  Identities=21%  Similarity=0.234  Sum_probs=42.9

Q ss_pred             CCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeec
Q 011978          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (473)
Q Consensus       219 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  279 (473)
                      .|.+.-+|+.+++.......+.......--...+++++|+.||.++-+|.++|+.+.+++.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            3678888999998877654322111111112356888999999999999999999987754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=83.89  E-value=4.9  Score=34.02  Aligned_cols=133  Identities=11%  Similarity=0.115  Sum_probs=70.4

Q ss_pred             CceEEEEeCCCCCCCeeeec--Cc-c----cceeEEE--ECCCCc-EEEEEE---CCCcEEEEeCCCCc--e--EEEeeC
Q 011978          338 DFTMFLWEPAVSKQPKTRMT--GH-Q----QLVNHVY--FSPDGQ-WVASAS---FDKSIKLWNGTTGK--F--VAVFRG  400 (473)
Q Consensus       338 d~~i~iwd~~~~~~~~~~~~--~~-~----~~v~~v~--~sp~g~-~lasgs---~d~~v~lwd~~~~~--~--~~~~~~  400 (473)
                      .|.+.++|+.........+.  +. .    -....+.  -.++|+ +|+...   ...+|.+|++....  .  +..+..
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            47788888755433222211  10 0    0112232  245565 344443   34578888765332  2  122221


Q ss_pred             -CccCEEEEEEecCCCEEEEEeC---C------------CcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE-e
Q 011978          401 -HVGPVYQISWSADSRLLLSGSK---D------------STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG-G  463 (473)
Q Consensus       401 -h~~~v~~v~~sp~g~~l~s~s~---D------------g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~-~  463 (473)
                       .....++|++..+|.+++|-..   +            +...+|....++...... .-..-+.++++||+++|..+ +
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEG
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeC
Confidence             2345799999999998888321   1            233444444443322222 23457899999999877544 4


Q ss_pred             CCCcEEec
Q 011978          464 KDRVLKLW  471 (473)
Q Consensus       464 ~D~~i~~w  471 (473)
                      ..++|+.|
T Consensus       226 ~~~~i~~y  233 (340)
T d1v04a_         226 LAHKIHVY  233 (340)
T ss_dssp             GGTEEEEE
T ss_pred             CCCeEEEE
Confidence            55667665

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.04  E-value=16  Score=32.09  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=25.0

Q ss_pred             ccEEEEEecCCCeEEEeec-CCeEEEEECCCCc
Q 011978          241 LAVTCVKWGGDGVIYTGSQ-DCTIKVWETTQGK  272 (473)
Q Consensus       241 ~~v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~  272 (473)
                      ..-++++|.+++.|+.... .|.|++++..+++
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~   59 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence            3567899999998777775 7999998876654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.87  E-value=11  Score=30.25  Aligned_cols=134  Identities=10%  Similarity=0.013  Sum_probs=72.9

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCCcc---ccccCCCcCCcEEEEEeceec
Q 011978          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKP---SGNPLSGHKKWITGISWEPVH  205 (473)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~  205 (473)
                      ..|+..++.+........ ....+..++|.+..+.|+-.. ..+.|+.-++.....   ...........+.++++.+. 
T Consensus        10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~-   87 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-   87 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT-
T ss_pred             CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeec-
Confidence            358888887654333233 445678899998877777654 456676666543211   11111111223344544332 


Q ss_pred             cCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEee--cCCeEEEEEC
Q 011978          206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGS--QDCTIKVWET  268 (473)
Q Consensus       206 ~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~--~d~~i~~wd~  268 (473)
                         ....+.+-...+.|.+.++..................++.++ .|.++...  ..+.|.-.++
T Consensus        88 ---~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~  150 (266)
T d1ijqa1          88 ---HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  150 (266)
T ss_dssp             ---TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ---cceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEecc
Confidence               123455556677889998877665554555555667788776 45665443  2334544444