Citrus Sinensis ID: 012101
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | 2.2.26 [Sep-21-2011] | |||||||
| Q3ECB8 | 467 | Pentatricopeptide repeat- | yes | no | 0.934 | 0.942 | 0.606 | 1e-165 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.806 | 0.638 | 0.393 | 4e-83 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.849 | 0.573 | 0.363 | 4e-82 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.832 | 0.606 | 0.382 | 4e-82 | |
| Q9SJG6 | 559 | Pentatricopeptide repeat- | no | no | 0.819 | 0.690 | 0.380 | 5e-80 | |
| Q8LK93 | 603 | Pentatricopeptide repeat- | no | no | 0.900 | 0.703 | 0.342 | 2e-77 | |
| Q9SI53 | 630 | Pentatricopeptide repeat- | no | no | 0.785 | 0.587 | 0.389 | 1e-76 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.715 | 0.454 | 0.397 | 3e-76 | |
| P0C8Q2 | 654 | Pentatricopeptide repeat- | no | no | 0.883 | 0.636 | 0.375 | 8e-76 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.804 | 0.709 | 0.368 | 1e-75 |
| >sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 580 bits (1495), Expect = e-165, Method: Compositional matrix adjust.
Identities = 267/440 (60%), Positives = 344/440 (78%)
Query: 29 HTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFH 88
H VT S++S + +D K++AT LS CT+L ++ +I+ I R+ +L Y AF
Sbjct: 25 HRLNHFVTTSSSSVTPLSPQDRNKLLATLLSNCTSLARVRRIHGDIFRSRILDQYPIAFL 84
Query: 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAV 148
WNNI+R Y R E+P A+ +Y+ M R+ VLPD Y+LPIV+KA+ Q+ +G++LHS+AV
Sbjct: 85 WNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAV 144
Query: 149 RLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAID 208
RLG +EFCESGFI+LY KAG+FE ARKVFDENPERKLGSWNAII GL+ GRA EA++
Sbjct: 145 RLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVE 204
Query: 209 MFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDM 268
MF+ +K+ G EPDD TMVSVT++CG LGDL LA Q+HK V Q K+++KSD +MLNSLIDM
Sbjct: 205 MFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDM 264
Query: 269 YGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTF 328
YGKCGRMDLA +F E+ Q NV SW+SMIVGYAANG EAL+CF MRE G+RPN +TF
Sbjct: 265 YGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITF 324
Query: 329 VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMP 388
VGVLSACVHGG V+EGK +F MMK+ +++EP +HYGC+VDLL R G L+EA+ +VE MP
Sbjct: 325 VGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMP 384
Query: 389 MKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448
MK NV++WGCLMG CEKFG+V+M EWVA ++ ELEPW+DG YVVL+N+YA RG+W++VER
Sbjct: 385 MKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVLANVYALRGMWKDVER 444
Query: 449 IRAVMKHRNLAKIPAYSLAT 468
+R +MK + +AKIPAYS A+
Sbjct: 445 VRKLMKTKKVAKIPAYSYAS 464
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 309 bits (791), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 151/384 (39%), Positives = 233/384 (60%), Gaps = 4/384 (1%)
Query: 86 AFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVL-PDCYTLPIVLKASCQLFALEIGRQLH 144
F WN +IR Y + A +Y M +G++ PD +T P ++KA + + +G +H
Sbjct: 85 VFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIH 144
Query: 145 SLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAK 204
S+ +R G S + ++ + LY+ GD A KVFD+ PE+ L +WN++I G +++G+ +
Sbjct: 145 SVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPE 204
Query: 205 EAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNS 264
EA+ ++ + G +PD T+VS+ SAC +G L L +VH Y+ +V + + N
Sbjct: 205 EALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS--NV 262
Query: 265 LIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRES-GIRP 323
L+D+Y +CGR++ A +F E+ N SWTS+IVG A NG EA++ F YM + G+ P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322
Query: 324 NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAM 383
+TFVG+L AC H G V+EG +F M+ Y+IEPR H+GCMVDLL RAG +++A
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382
Query: 384 VEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443
++ MPM+ NVVIW L+GAC G+ + E+ + +LEP G YV+LSN+YAS W
Sbjct: 383 IKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRW 442
Query: 444 EEVERIRAVMKHRNLAKIPAYSLA 467
+V++IR M + K+P +SL
Sbjct: 443 SDVQKIRKQMLRDGVKKVPGHSLV 466
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (781), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 161/443 (36%), Positives = 252/443 (56%), Gaps = 43/443 (9%)
Query: 59 SKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVL 118
SKC N+ +++ + +++ WN++I + + +ALD++ M + V
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVS-------WNSLITCFEQNGPAVEALDVFQMMLESRVE 250
Query: 119 PDCYTLPIVLKASCQLFALEIGRQLHSLAVRLG-LESNEFCESGFISLYSKAGDFEKARK 177
PD TL V+ A L A+++G+++H V+ L ++ + F+ +Y+K ++AR
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARF 310
Query: 178 VFDENP-------------------------------ERKLGSWNAIIAGLSQDGRAKEA 206
+FD P ER + SWNA+IAG +Q+G +EA
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370
Query: 207 IDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV----FQVKSKQKSDTLML 262
+ +F LK+ P + ++ AC L +L L +Q H +V F+ +S ++ D +
Sbjct: 371 LSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430
Query: 263 NSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIR 322
NSLIDMY KCG ++ Y VF ++ + + SW +MI+G+A NG NEAL+ F M ESG +
Sbjct: 431 NSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEK 490
Query: 323 PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARA 382
P+H+T +GVLSAC H G V+EG+H+F M + + P HY CMVDLLGRAG LEEA++
Sbjct: 491 PDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKS 550
Query: 383 MVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGL 442
M+E MPM+ + VIWG L+ AC+ N+ +G++VA+ L E+EP + G YV+LSN+YA G
Sbjct: 551 MIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGK 610
Query: 443 WEEVERIRAVMKHRNLAKIPAYS 465
WE+V +R M+ + K P S
Sbjct: 611 WEDVMNVRKSMRKEGVTKQPGCS 633
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (781), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 249/444 (56%), Gaps = 52/444 (11%)
Query: 71 YAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIF---MSRAGVLPDCYTLPIV 127
YAH I M F WN IIR ++ + K + I +F MS V P+ +T P V
Sbjct: 77 YAHKIFNQM--PQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 128 LKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYS-------------------- 167
LKA + ++ G+Q+H LA++ G +EF S + +Y
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Query: 168 -------------------------KAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGR 202
+ GD + AR +FD+ +R + SWN +I+G S +G
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 203 AKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLML 262
K+A+++F +KK P+ VT+VSV A LG LEL +H Y S + D ++
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYA--EDSGIRIDDVLG 312
Query: 263 NSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIR 322
++LIDMY KCG ++ A VF + + NV +W++MI G+A +G A +A+DCF MR++G+R
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 372
Query: 323 PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARA 382
P+ V ++ +L+AC HGG V+EG+ +F M +V +EPR HYGCMVDLLGR+GLL+EA
Sbjct: 373 PSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEE 432
Query: 383 MVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGL 442
+ MP+K + VIW L+GAC GNV+MG+ VA L ++ P GAYV LSN+YAS+G
Sbjct: 433 FILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGN 492
Query: 443 WEEVERIRAVMKHRNLAKIPAYSL 466
W EV +R MK +++ K P SL
Sbjct: 493 WSEVSEMRLRMKEKDIRKDPGCSL 516
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (764), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 242/423 (57%), Gaps = 37/423 (8%)
Query: 71 YAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFM--SRAGVLPDCYTLPIVL 128
YA+++ T + H F WN IIR ++R P+ A+ I+I M S V P T P V
Sbjct: 76 YAYLVFTRINHK--NPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVF 133
Query: 129 KASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLY---------------------- 166
KA +L GRQLH + ++ GLE + F + + +Y
Sbjct: 134 KAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVV 193
Query: 167 ---------SKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCG 217
+K G ++A+ +FDE P+R SWN++I+G ++GR K+A+DMF +++
Sbjct: 194 AWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKD 253
Query: 218 FEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDL 277
+PD TMVS+ +AC LG E +H+Y+ V+++ + +++++ +LIDMY KCG ++
Sbjct: 254 VKPDGFTMVSLLNACAYLGASEQGRWIHEYI--VRNRFELNSIVVTALIDMYCKCGCIEE 311
Query: 278 AYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337
VF + +S W SMI+G A NG A+D F + SG+ P+ V+F+GVL+AC H
Sbjct: 312 GLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAH 371
Query: 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWG 397
G+V FF +MK Y IEP HY MV++LG AGLLEEA A+++ MP++ + VIW
Sbjct: 372 SGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWS 431
Query: 398 CLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRN 457
L+ AC K GNV+M + AK L++L+P YV+LSN YAS GL+EE R +MK R
Sbjct: 432 SLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQ 491
Query: 458 LAK 460
+ K
Sbjct: 492 MEK 494
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 259/467 (55%), Gaps = 43/467 (9%)
Query: 30 TFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH-------- 81
TF KH I ++ ++P ++ SKC +L +L QI A+ I++H+
Sbjct: 17 TFTKHSKIDTVNT-----QNPILLI----SKCNSLRELMQIQAYAIKSHIEDVSFVAKLI 67
Query: 82 ----------SYSAAFH------------WNNIIRLYTRLEAPKKALDIYIFMSRAGVLP 119
S S A H +N++ R Y+R P + +++ + G+LP
Sbjct: 68 NFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILP 127
Query: 120 DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVF 179
D YT P +LKA ALE GRQLH L+++LGL+ N + I++Y++ D + AR VF
Sbjct: 128 DNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVF 187
Query: 180 DENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLE 239
D E + +NA+I G ++ R EA+ +F ++ +P+++T++SV S+C LG L+
Sbjct: 188 DRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLD 247
Query: 240 LALQVHKYVFQVKSKQKSDTLMLNS-LIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIV 298
L +HKY K + +N+ LIDM+ KCG +D A +F ++ + +W++MIV
Sbjct: 248 LGKWIHKYA---KKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIV 304
Query: 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIE 358
YA +G A +++ F MR ++P+ +TF+G+L+AC H G+V+EG+ +F M + + I
Sbjct: 305 AYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIV 364
Query: 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKH 418
P HYG MVDLL RAG LE+A ++ +P+ ++W L+ AC N+ + E V++
Sbjct: 365 PSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSER 424
Query: 419 LQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYS 465
+ EL+ G YV+LSN+YA WE V+ +R VMK R K+P S
Sbjct: 425 IFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCS 471
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/377 (38%), Positives = 224/377 (59%), Gaps = 7/377 (1%)
Query: 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAV 148
W +I Y++ + +KAL++ + M R V P+ YT VL+ SC + R LH +
Sbjct: 130 WTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLR-SCN--GMSDVRMLHCGII 186
Query: 149 RLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAID 208
+ GLES+ F S I +++K G+ E A VFDE WN+II G +Q+ R+ A++
Sbjct: 187 KEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALE 246
Query: 209 MFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDM 268
+F +K+ GF + T+ SV AC L LEL +Q H ++ K D ++ N+L+DM
Sbjct: 247 LFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV----KYDQDLILNNALVDM 302
Query: 269 YGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTF 328
Y KCG ++ A +VF ++ + +V +W++MI G A NG + EAL F M+ SG +PN++T
Sbjct: 303 YCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITI 362
Query: 329 VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMP 388
VGVL AC H G +++G ++F MK +Y I+P HYGCM+DLLG+AG L++A ++ M
Sbjct: 363 VGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEME 422
Query: 389 MKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448
+ + V W L+GAC N+ + E+ AK + L+P G Y +LSNIYA+ W+ VE
Sbjct: 423 CEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEE 482
Query: 449 IRAVMKHRNLAKIPAYS 465
IR M+ R + K P S
Sbjct: 483 IRTRMRDRGIKKEPGCS 499
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 230/377 (61%)
Query: 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAV 148
WN +I Y K+AL+++ M + V PD T+ V+ A Q ++E+GRQ+H
Sbjct: 234 WNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWID 293
Query: 149 RLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAID 208
G SN + I LYSK G+ E A +F+ P + + SWN +I G + KEA+
Sbjct: 294 DHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALL 353
Query: 209 MFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDM 268
+F + + G P+DVTM+S+ AC LG +++ +H Y+ + + + + SLIDM
Sbjct: 354 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDM 413
Query: 269 YGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTF 328
Y KCG ++ A++VF I ++SSW +MI G+A +G A+ + D F MR+ GI+P+ +TF
Sbjct: 414 YAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITF 473
Query: 329 VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMP 388
VG+LSAC H G + G+H F M Y++ P+ HYGCM+DLLG +GL +EA M+ M
Sbjct: 474 VGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMME 533
Query: 389 MKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448
M+ + VIW L+ AC+ GNV++GE A++L ++EP + G+YV+LSNIYAS G W EV +
Sbjct: 534 MEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAK 593
Query: 449 IRAVMKHRNLAKIPAYS 465
RA++ + + K+P S
Sbjct: 594 TRALLNDKGMKKVPGCS 610
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 159/424 (37%), Positives = 227/424 (53%), Gaps = 8/424 (1%)
Query: 44 LDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPK 103
+D A + KC +L ++ I R WN++ + Y+
Sbjct: 184 VDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGD-----RTVVSWNSMFKAYSVFGEAF 238
Query: 104 KALDIYIFMSRAGVLPDCYTLPIVLKASCQ-LFALEIGRQLHSLAVRLGLESNEFCESGF 162
A +Y M R PD T I L ASCQ L GR +HS A+ LG + + + F
Sbjct: 239 DAFGLYCLMLREEFKPDLSTF-INLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTF 297
Query: 163 ISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD 222
IS+YSK+ D AR +FD R SW +I+G ++ G EA+ +F + K G +PD
Sbjct: 298 ISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDL 357
Query: 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVF 282
VT++S+ S CG G LE + + ++ + ++ N+LIDMY KCG + A +F
Sbjct: 358 VTLLSLISGCGKFGSLETGKWIDARA-DIYGCKRDNVMICNALIDMYSKCGSIHEARDIF 416
Query: 283 WEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQ 342
+ V +WT+MI GYA NG+ EAL F M + +PNH+TF+ VL AC H G ++
Sbjct: 417 DNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLE 476
Query: 343 EGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGA 402
+G +F +MK VY I P HY CMVDLLGR G LEEA ++ M K + IWG L+ A
Sbjct: 477 KGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNA 536
Query: 403 CEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIP 462
C+ NVK+ E A+ L LEP YV ++NIYA+ G+W+ RIR++MK RN+ K P
Sbjct: 537 CKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYP 596
Query: 463 AYSL 466
S+
Sbjct: 597 GESV 600
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 152/413 (36%), Positives = 235/413 (56%), Gaps = 34/413 (8%)
Query: 86 AFHWNNIIRLYTRLEAPKKALDIYIFMSRAGV-LPDCYTLPIVLKASCQLFALEIGRQLH 144
F +N+IIR YT + IY + R LPD +T P + K+ L + +G+Q+H
Sbjct: 73 VFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVH 132
Query: 145 SLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAK 204
+ G + E+ I +Y K D A KVFDE ER + SWN++++G ++ G+ K
Sbjct: 133 GHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMK 192
Query: 205 -------------------------------EAIDMFIGLKKCGFEPDDVTMVSVTSACG 233
EA+D F ++ G EPD+++++SV +C
Sbjct: 193 KAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCA 252
Query: 234 SLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSW 293
LG LEL +H Y + ++ T + N+LI+MY KCG + A ++F +++ +V SW
Sbjct: 253 QLGSLELGKWIHLYAERRGFLKQ--TGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISW 310
Query: 294 TSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353
++MI GYA +G A+ A++ F+ M+ + ++PN +TF+G+LSAC H G QEG +F+MM+
Sbjct: 311 STMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQ 370
Query: 354 VYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGE 413
YQIEP+ HYGC++D+L RAG LE A + + MPMK + IWG L+ +C GN+ +
Sbjct: 371 DYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVAL 430
Query: 414 WVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSL 466
HL ELEP G YV+L+NIYA G WE+V R+R ++++ N+ K P SL
Sbjct: 431 VAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSL 483
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | ||||||
| 225445120 | 479 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.972 | 0.670 | 0.0 | |
| 449435190 | 609 | PREDICTED: pentatricopeptide repeat-cont | 0.898 | 0.694 | 0.676 | 1e-173 | |
| 357520897 | 447 | Pentatricopeptide repeat-containing prot | 0.908 | 0.957 | 0.672 | 1e-173 | |
| 449506393 | 614 | PREDICTED: pentatricopeptide repeat-cont | 0.898 | 0.688 | 0.673 | 1e-172 | |
| 388518129 | 447 | unknown [Medicago truncatula] | 0.908 | 0.957 | 0.670 | 1e-172 | |
| 15223858 | 467 | pentatricopeptide repeat-containing prot | 0.934 | 0.942 | 0.606 | 1e-163 | |
| 297842491 | 466 | pentatricopeptide repeat-containing prot | 0.893 | 0.903 | 0.617 | 1e-159 | |
| 255546351 | 352 | pentatricopeptide repeat-containing prot | 0.622 | 0.832 | 0.709 | 1e-122 | |
| 224114537 | 254 | predicted protein [Populus trichocarpa] | 0.518 | 0.960 | 0.740 | 1e-109 | |
| 357130868 | 433 | PREDICTED: pentatricopeptide repeat-cont | 0.806 | 0.877 | 0.507 | 1e-108 |
| >gi|225445120|ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Vitis vinifera] gi|297738768|emb|CBI28013.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/473 (67%), Positives = 374/473 (79%), Gaps = 7/473 (1%)
Query: 6 PGISLSSLRMKSSHPLLHRLCK-----THTFRKHVTI--SAASSFLDTHEDPAKIVATQL 58
P + LS +++ + LC TH+ +A D +D A+ +A+ L
Sbjct: 7 PLLRLSIVQIPKPQTISRHLCNYLATTTHSVDAQFNFQPTAHPPSPDPIQDTAQTIASHL 66
Query: 59 SKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVL 118
SKC NL++LNQ+ AHIIRTH L Y A F WNNIIR YTRLEA AL IYI MSRAGV
Sbjct: 67 SKCANLIELNQLLAHIIRTHFLELYPAPFQWNNIIRSYTRLEAHHYALSIYIAMSRAGVS 126
Query: 119 PDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKV 178
PD YT+PIVLKA CQ FA GRQ+HS+A+R GLE NE+CESGFIS+YSKAG+F+ A KV
Sbjct: 127 PDSYTIPIVLKAVCQAFATGFGRQVHSVAIRHGLELNEYCESGFISVYSKAGEFQNAHKV 186
Query: 179 FDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDL 238
F++N RKLGSWNAII GLSQ GRAKEA+ MF+ ++KCGFEPD+VTMVSVTSACGSLG L
Sbjct: 187 FEQNRFRKLGSWNAIIGGLSQGGRAKEAVTMFMEMRKCGFEPDEVTMVSVTSACGSLGHL 246
Query: 239 ELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIV 298
+LALQ+HK V+Q K+ ++SDTL LNSL+DMYGKCGRMDLAY+VF +D+PNVSSWTSMIV
Sbjct: 247 DLALQLHKCVYQAKTSERSDTLTLNSLVDMYGKCGRMDLAYRVFSRMDEPNVSSWTSMIV 306
Query: 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIE 358
GYA +G +AL+CF MRE+G+RPNHVTF+GVLSACVHGG VQEGK++F+MM Y +
Sbjct: 307 GYAMHGQLYDALECFRCMREAGVRPNHVTFIGVLSACVHGGAVQEGKYYFDMMTTAYGLV 366
Query: 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKH 418
PR HYGCMVDLLGRAGLLEEAR MVE MPMKANV++WGCLMGACEK+GNVKMGEWVA+H
Sbjct: 367 PRMQHYGCMVDLLGRAGLLEEARKMVERMPMKANVIVWGCLMGACEKYGNVKMGEWVAEH 426
Query: 419 LQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATRLD 471
L ELEPW+DG +VVLSNIYASRGLW EVER+R VMK R L K+PAYSLAT D
Sbjct: 427 LLELEPWNDGVFVVLSNIYASRGLWREVERVRGVMKERKLDKVPAYSLATNAD 479
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 286/423 (67%), Positives = 348/423 (82%)
Query: 49 DPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDI 108
D A+IVAT L CTN+L+L QI+AH++RT+ML ++ ++F+WN IIR YTRLE P+ AL +
Sbjct: 187 DHARIVATLLMNCTNVLELYQIHAHVLRTNMLENHPSSFYWNIIIRSYTRLEVPRIALFV 246
Query: 109 YIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSK 168
YI M RAG+LPDCYTLPIV KA +A ++G QLHS+A+RLG E +++ ESG ISLYSK
Sbjct: 247 YIDMLRAGILPDCYTLPIVFKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSK 306
Query: 169 AGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSV 228
GD E A KVF++N RKLGSWNAIIAGLSQ GRAKEA++MFI L++ G EPDD T+VSV
Sbjct: 307 IGDLECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSV 366
Query: 229 TSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP 288
TSACGSLG+LEL+LQ+HK+VFQVK KS+ LMLNSLIDMYGKCGRMDLA KVF +
Sbjct: 367 TSACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHR 426
Query: 289 NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFF 348
NVSSWTS+IVGYA +G +AL+ F +MRE+G+ PN VTFVGVLSACVHGG + EGKH+F
Sbjct: 427 NVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLSACVHGGMINEGKHYF 486
Query: 349 EMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGN 408
+MMKNVY +P+ HYGCMVDLL +AGLLEEAR M+E MPMKAN +IWGCL+G CEK GN
Sbjct: 487 DMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMPMKANSIIWGCLIGGCEKHGN 546
Query: 409 VKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLAT 468
V++GEW KHLQELEPW+DG YVVLSNIYA+ G+W+E +++R VMK R LAK+P YSLAT
Sbjct: 547 VEIGEWAGKHLQELEPWNDGVYVVLSNIYATNGMWKEAQKMRDVMKQRQLAKVPGYSLAT 606
Query: 469 RLD 471
RLD
Sbjct: 607 RLD 609
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 288/428 (67%), Positives = 348/428 (81%)
Query: 44 LDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPK 103
+ + DP ++AT LS T + LNQIYAHI+ T L S A+F+WNNIIR YTRLE+P+
Sbjct: 20 ITSGNDPVTVIATLLSNTTRIRDLNQIYAHILLTRFLESNPASFNWNNIIRSYTRLESPQ 79
Query: 104 KALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163
AL IY+ M RAGVLPD YTLPIVLKA Q FA+++G+Q+HS ++LGL+SNE+CESGFI
Sbjct: 80 NALRIYVSMLRAGVLPDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFI 139
Query: 164 SLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDV 223
+LY KAGDF+ A KVFDEN E KLGSWNA+I+GLSQ G A +AI +F+ +K+ GFEPD +
Sbjct: 140 NLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDGI 199
Query: 224 TMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFW 283
TMVSV SACGS+GDL LALQ+HKYVFQ K+ + + LM NSLIDMYGKCGRMDLAY+VF
Sbjct: 200 TMVSVMSACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFA 259
Query: 284 EIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQE 343
++ NVSSWTSMIVGYA +G A EAL CFH MRESG++PN+VTF+GVLSACVHGG VQE
Sbjct: 260 TMEDRNVSSWTSMIVGYAMHGHAKEALGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQE 319
Query: 344 GKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGAC 403
G+ +F+MMKN+Y I P+ HYGCMVDLLGRAGL ++AR MVE MPMK N V+WGCLMGAC
Sbjct: 320 GRFYFDMMKNIYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGAC 379
Query: 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPA 463
EK GNV M EWVA++LQ LEPW++G YVVLSNIYA++GLW+EVERIR+ MK LAKIPA
Sbjct: 380 EKHGNVDMAEWVAENLQALEPWNEGVYVVLSNIYANKGLWKEVERIRSFMKEGRLAKIPA 439
Query: 464 YSLATRLD 471
YS+ T D
Sbjct: 440 YSITTNSD 447
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 285/423 (67%), Positives = 348/423 (82%)
Query: 49 DPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDI 108
D A+IVAT L CTN+L+L QI+AH++RT+ML ++ ++F+WN IIR YTRLE P+ AL +
Sbjct: 192 DHARIVATLLMNCTNVLELYQIHAHVLRTNMLENHPSSFYWNIIIRSYTRLEVPRIALFV 251
Query: 109 YIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSK 168
YI M +AG+LPDCYTLPIV KA +A ++G QLHS+A+RLG E +++ ESG ISLYSK
Sbjct: 252 YIAMLQAGILPDCYTLPIVFKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSK 311
Query: 169 AGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSV 228
GD E A KVF++N RKLGSWNAIIAGLSQ GRAKEA++MFI L++ G EPDD T+VSV
Sbjct: 312 IGDLECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSV 371
Query: 229 TSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP 288
TSACGSLG+LEL+LQ+HK+VFQVK KS+ LMLNSLIDMYGKCGRMDLA KVF +
Sbjct: 372 TSACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHR 431
Query: 289 NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFF 348
NVSSWTS+IVGYA +G +AL+ F +MRE+G+ PN VTFVGVLSACVHGG + EGKH+F
Sbjct: 432 NVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLSACVHGGMINEGKHYF 491
Query: 349 EMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGN 408
+MMKNVY +P+ HYGCMVDLL +AGLLEEAR M+E MPMKAN +IWGCL+G CEK GN
Sbjct: 492 DMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMPMKANSIIWGCLIGGCEKHGN 551
Query: 409 VKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLAT 468
V++GEW KHLQELEPW+DG YVVLSNIYA+ G+W+E +++R VMK R LAK+P YSLAT
Sbjct: 552 VEIGEWAGKHLQELEPWNDGVYVVLSNIYATNGMWKEAQKMRDVMKQRQLAKVPGYSLAT 611
Query: 469 RLD 471
RLD
Sbjct: 612 RLD 614
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 287/428 (67%), Positives = 347/428 (81%)
Query: 44 LDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPK 103
+ + DP ++AT LS T + LNQIYAHI+ T L S A+F+WNNIIR YTRLE+P+
Sbjct: 20 ITSGNDPVTVIATLLSNTTRIRDLNQIYAHILLTRFLESNPASFNWNNIIRSYTRLESPQ 79
Query: 104 KALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163
AL IY+ M RAGVLPD YTLPIVLKA Q FA+++G+Q+HS ++LGL+SNE+CESGFI
Sbjct: 80 NALRIYVSMLRAGVLPDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFI 139
Query: 164 SLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDV 223
+LY KAGDF+ A KVFDEN E KLGSWNA+I+GLSQ G A +AI +F+ +K+ GFEPD +
Sbjct: 140 NLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDGI 199
Query: 224 TMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFW 283
TMVSV ACGS+GDL LALQ+HKYVFQ K+ + + LM NSLIDMYGKCGRMDLAY+VF
Sbjct: 200 TMVSVMCACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFA 259
Query: 284 EIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQE 343
++ NVSSWTSMIVGYA +G A EAL CFH MRESG++PN+VTF+GVLSACVHGG VQE
Sbjct: 260 TMEDRNVSSWTSMIVGYAMHGHAKEALGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQE 319
Query: 344 GKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGAC 403
G+ +F+MMKN+Y I P+ HYGCMVDLLGRAGL ++AR MVE MPMK N V+WGCLMGAC
Sbjct: 320 GRFYFDMMKNIYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGAC 379
Query: 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPA 463
EK GNV M EWVA++LQ LEPW++G YVVLSNIYA++GLW+EVERIR+ MK LAKIPA
Sbjct: 380 EKHGNVDMAEWVAENLQALEPWNEGVYVVLSNIYANKGLWKEVERIRSFMKEGRLAKIPA 439
Query: 464 YSLATRLD 471
YS+ T D
Sbjct: 440 YSITTNSD 447
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223858|ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77170 gi|332197823|gb|AEE35944.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 267/440 (60%), Positives = 344/440 (78%)
Query: 29 HTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFH 88
H VT S++S + +D K++AT LS CT+L ++ +I+ I R+ +L Y AF
Sbjct: 25 HRLNHFVTTSSSSVTPLSPQDRNKLLATLLSNCTSLARVRRIHGDIFRSRILDQYPIAFL 84
Query: 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAV 148
WNNI+R Y R E+P A+ +Y+ M R+ VLPD Y+LPIV+KA+ Q+ +G++LHS+AV
Sbjct: 85 WNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAV 144
Query: 149 RLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAID 208
RLG +EFCESGFI+LY KAG+FE ARKVFDENPERKLGSWNAII GL+ GRA EA++
Sbjct: 145 RLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVE 204
Query: 209 MFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDM 268
MF+ +K+ G EPDD TMVSVT++CG LGDL LA Q+HK V Q K+++KSD +MLNSLIDM
Sbjct: 205 MFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDM 264
Query: 269 YGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTF 328
YGKCGRMDLA +F E+ Q NV SW+SMIVGYAANG EAL+CF MRE G+RPN +TF
Sbjct: 265 YGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITF 324
Query: 329 VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMP 388
VGVLSACVHGG V+EGK +F MMK+ +++EP +HYGC+VDLL R G L+EA+ +VE MP
Sbjct: 325 VGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMP 384
Query: 389 MKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448
MK NV++WGCLMG CEKFG+V+M EWVA ++ ELEPW+DG YVVL+N+YA RG+W++VER
Sbjct: 385 MKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVLANVYALRGMWKDVER 444
Query: 449 IRAVMKHRNLAKIPAYSLAT 468
+R +MK + +AKIPAYS A+
Sbjct: 445 VRKLMKTKKVAKIPAYSYAS 464
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 260/421 (61%), Positives = 333/421 (79%)
Query: 48 EDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALD 107
+D K++AT LS CT+L ++ +I+ I R+ +L Y AF WNNI+R Y R ++P ++
Sbjct: 43 QDRNKLLATLLSNCTSLARVRRIHGDIFRSCILDQYPIAFLWNNIMRSYIRHDSPLDSVQ 102
Query: 108 IYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYS 167
+Y+ M R+ VLPD YTLPIV+KA+ Q+ +G+QLHS+AVRLG +EFCESGFI+LY
Sbjct: 103 VYLGMVRSNVLPDRYTLPIVIKAAVQIHDFPLGKQLHSVAVRLGFVGDEFCESGFITLYC 162
Query: 168 KAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVS 227
KAG+ E AR VFDENPERKLGSWNAII GL+ GRA EA++MF+ +++ GFEPDD TMVS
Sbjct: 163 KAGELENARNVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFMEMRRSGFEPDDFTMVS 222
Query: 228 VTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ 287
VTSACG LGDL LA Q+HK V Q K+++KSD +M+NSLIDMYGKCGRMD A +VF E+ Q
Sbjct: 223 VTSACGGLGDLNLAFQLHKCVLQAKTEEKSDVMMMNSLIDMYGKCGRMDFAIQVFEEMPQ 282
Query: 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHF 347
NV SW+SMI GYAANG EAL+CF MRE G+RPN +TFVGVLSACVHGG V+EGK +
Sbjct: 283 RNVVSWSSMITGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKAY 342
Query: 348 FEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFG 407
F MMK+ + +EP +HYGC+VDLL R G L+EA+ +VE MPMK NV++WGCLMG CEKFG
Sbjct: 343 FAMMKSEFNLEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFG 402
Query: 408 NVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLA 467
+V+M EWVA ++ ELEPW+DG YVVL+N+YA +G+W++VER+R VMK + +AKIPAYS A
Sbjct: 403 DVEMAEWVAPYMVELEPWNDGVYVVLANVYALKGMWKDVERVRKVMKEKKVAKIPAYSYA 462
Query: 468 T 468
+
Sbjct: 463 S 463
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546351|ref|XP_002514235.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223546691|gb|EEF48189.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 208/293 (70%), Positives = 245/293 (83%)
Query: 48 EDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALD 107
+D AK ATQ S CT L LNQIYAHII + +LH YSA FHWNNIIR YTRL+AP KAL
Sbjct: 50 QDIAKWAATQSSNCTTLRDLNQIYAHIICSDLLHFYSAPFHWNNIIRSYTRLDAPVKALQ 109
Query: 108 IYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYS 167
+YI MSRAGVLPD YTLPIVLKA+CQ+F++EIG+QL S+A+RLGLESNE+CESGFIS YS
Sbjct: 110 VYISMSRAGVLPDSYTLPIVLKAACQIFSIEIGKQLQSVAIRLGLESNEYCESGFISFYS 169
Query: 168 KAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVS 227
K+GD + A K+F+ENPERKLGSWNAII GLSQ G AKEAI++FI ++KCGF PDDVTMVS
Sbjct: 170 KSGDIKNAYKMFEENPERKLGSWNAIIGGLSQGGHAKEAIEIFIEMRKCGFVPDDVTMVS 229
Query: 228 VTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ 287
V SACGSLGDL LA+Q+HKYVF +++ L++NSLIDMYGKCGRMDLA +VF + +
Sbjct: 230 VISACGSLGDLNLAIQLHKYVFHANVFGRTNILVMNSLIDMYGKCGRMDLARRVFCTMGE 289
Query: 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK 340
NVSSWTSMIVGY +G NEA++ FH MRE+G+RPNHVTF+GVLS CVHGGK
Sbjct: 290 KNVSSWTSMIVGYGMHGHVNEAIEYFHCMREAGVRPNHVTFIGVLSVCVHGGK 342
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114537|ref|XP_002332354.1| predicted protein [Populus trichocarpa] gi|222832075|gb|EEE70552.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/254 (74%), Positives = 216/254 (85%)
Query: 46 THEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKA 105
+++DP+K +ATQLS CT+L +LNQ YAH+IRTH+L Y+A FHWNN+IR YTRL AP KA
Sbjct: 1 SNQDPSKTIATQLSNCTSLQELNQTYAHVIRTHVLDVYTAPFHWNNLIRCYTRLGAPNKA 60
Query: 106 LDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISL 165
L IY+ MS AG+ PD YTLPIVLKA+CQ F++E+GRQLHS+A+RLGLE NE+CESGFISL
Sbjct: 61 LQIYVSMSHAGISPDNYTLPIVLKAACQCFSMELGRQLHSIAIRLGLELNEYCESGFISL 120
Query: 166 YSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTM 225
YSK+GDF A KVF+EN ERKLGSWNAII GL Q GRAKE I+MFI ++ CGF+PDDVTM
Sbjct: 121 YSKSGDFGDAYKVFEENLERKLGSWNAIIGGLCQGGRAKEVIEMFIEMRSCGFKPDDVTM 180
Query: 226 VSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEI 285
VSVTSACG LGDL LALQ+HKYVFQ KS K D LMLNSLIDMYGKCGRMDLAY VF +
Sbjct: 181 VSVTSACGILGDLHLALQLHKYVFQAKSFVKPDMLMLNSLIDMYGKCGRMDLAYMVFSRM 240
Query: 286 DQPNVSSWTSMIVG 299
DQ NVSSWTSMIVG
Sbjct: 241 DQRNVSSWTSMIVG 254
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357130868|ref|XP_003567066.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/384 (50%), Positives = 255/384 (66%), Gaps = 4/384 (1%)
Query: 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFAL--EIGRQLH 144
FHWN + R Y R + + AL + M R PD YT P+ LKA+ Q + RQ H
Sbjct: 50 FHWNALTRAYLRHGSSRSALCVAAHMFRCAAHPDRYTFPLALKAAAQGEPPISSLRRQFH 109
Query: 145 SLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAK 204
+ A + GL + F ES IS YSKAGD + AR+VFDENP R LGSWNAII+GLSQ G +K
Sbjct: 110 AAAAKRGLARHPFTESALISCYSKAGDLDAARRVFDENPHRGLGSWNAIISGLSQAGESK 169
Query: 205 EAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNS 264
E + +F+ +++CG PDD+TMVS+ S+C ++GD+ L Q+HK + Q K + D + N+
Sbjct: 170 EPLALFVKMRRCGVVPDDLTMVSLVSSCCAVGDIGLVEQLHKCMLQCKHSSRLDVTLSNA 229
Query: 265 LIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN 324
LIDMY KCGR DLA +VF + +VSSWT+MI G A +G AL F M+ G+ PN
Sbjct: 230 LIDMYAKCGRTDLAGRVFERMPLRDVSSWTTMITGLATHGEEQRALKKFDEMKSEGVPPN 289
Query: 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKN-VYQIEPRFAHYGCMVDLLGRAGLLEEARAM 383
VT + VLSAC H G V G + M++ ++ P HYGC+VDLLGR G +++ARA+
Sbjct: 290 RVTMLAVLSACAHRGLVDTGMGLLKQMEDGEIKVAPTVEHYGCLVDLLGRVGWVDDARAL 349
Query: 384 VE-GMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGL 442
VE MPM+ANVVIWG L+GACEK GNV +GEW A+ LQE EPW+DG YVVLSN+YA+ G+
Sbjct: 350 VEHRMPMEANVVIWGTLLGACEKHGNVSVGEWAAERLQEAEPWNDGVYVVLSNVYAAAGM 409
Query: 443 WEEVERIRAVMKHRNLAKIPAYSL 466
W EVER+R +M R + K P SL
Sbjct: 410 WGEVERVRKMMSGRKVTKFPGCSL 433
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 471 | ||||||
| TAIR|locus:2195980 | 467 | AT1G77170 "AT1G77170" [Arabido | 0.934 | 0.942 | 0.606 | 2.7e-148 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.834 | 0.660 | 0.386 | 7.4e-80 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.798 | 0.507 | 0.402 | 3.1e-74 | |
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.940 | 0.734 | 0.342 | 1.8e-71 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.785 | 0.587 | 0.395 | 2.9e-71 | |
| TAIR|locus:4515103421 | 654 | AT4G19191 "AT4G19191" [Arabido | 0.798 | 0.574 | 0.401 | 4.8e-71 | |
| TAIR|locus:2025946 | 638 | CRR28 "CHLORORESPIRATORY REDUC | 0.963 | 0.711 | 0.364 | 3.3e-70 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.734 | 0.479 | 0.401 | 3.7e-70 | |
| TAIR|locus:2011892 | 596 | AT1G50270 "AT1G50270" [Arabido | 0.796 | 0.629 | 0.378 | 7e-70 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.660 | 0.446 | 0.438 | 1.4e-69 |
| TAIR|locus:2195980 AT1G77170 "AT1G77170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
Identities = 267/440 (60%), Positives = 344/440 (78%)
Query: 29 HTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFH 88
H VT S++S + +D K++AT LS CT+L ++ +I+ I R+ +L Y AF
Sbjct: 25 HRLNHFVTTSSSSVTPLSPQDRNKLLATLLSNCTSLARVRRIHGDIFRSRILDQYPIAFL 84
Query: 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAV 148
WNNI+R Y R E+P A+ +Y+ M R+ VLPD Y+LPIV+KA+ Q+ +G++LHS+AV
Sbjct: 85 WNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAV 144
Query: 149 RLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAID 208
RLG +EFCESGFI+LY KAG+FE ARKVFDENPERKLGSWNAII GL+ GRA EA++
Sbjct: 145 RLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVE 204
Query: 209 MFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDM 268
MF+ +K+ G EPDD TMVSVT++CG LGDL LA Q+HK V Q K+++KSD +MLNSLIDM
Sbjct: 205 MFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDM 264
Query: 269 YGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTF 328
YGKCGRMDLA +F E+ Q NV SW+SMIVGYAANG EAL+CF MRE G+RPN +TF
Sbjct: 265 YGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITF 324
Query: 329 VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMP 388
VGVLSACVHGG V+EGK +F MMK+ +++EP +HYGC+VDLL R G L+EA+ +VE MP
Sbjct: 325 VGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMP 384
Query: 389 MKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448
MK NV++WGCLMG CEKFG+V+M EWVA ++ ELEPW+DG YVVL+N+YA RG+W++VER
Sbjct: 385 MKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVLANVYALRGMWKDVER 444
Query: 449 IRAVMKHRNLAKIPAYSLAT 468
+R +MK + +AKIPAYS A+
Sbjct: 445 VRKLMKTKKVAKIPAYSYAS 464
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 776 (278.2 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
Identities = 154/398 (38%), Positives = 240/398 (60%)
Query: 71 YAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVL-PDCYTLPIVLK 129
YAH + + + + F WN +IR Y + A +Y M +G++ PD +T P ++K
Sbjct: 71 YAHKVFSKIEKPINV-FIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIK 129
Query: 130 ASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGS 189
A + + +G +HS+ +R G S + ++ + LY+ GD A KVFD+ PE+ L +
Sbjct: 130 AVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189
Query: 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVF 249
WN++I G +++G+ +EA+ ++ + G +PD T+VS+ SAC +G L L +VH Y+
Sbjct: 190 WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI 249
Query: 250 QVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEA 309
+V + + N L+D+Y +CGR++ A +F E+ N SWTS+IVG A NG EA
Sbjct: 250 KVGLTRNLHSS--NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307
Query: 310 LDCFHYMRES-GIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV 368
++ F YM + G+ P +TFVG+L AC H G V+EG +F M+ Y+IEPR H+GCMV
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMV 367
Query: 369 DLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428
DLL RAG +++A ++ MPM+ NVVIW L+GAC G+ + E+ + +LEP G
Sbjct: 368 DLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSG 427
Query: 429 AYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSL 466
YV+LSN+YAS W +V++IR M + K+P +SL
Sbjct: 428 DYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSL 465
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 152/378 (40%), Positives = 232/378 (61%)
Query: 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAV 148
WN +I Y K+AL+++ M + V PD T+ V+ A Q ++E+GRQ+H
Sbjct: 234 WNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWID 293
Query: 149 RLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAID 208
G SN + I LYSK G+ E A +F+ P + + SWN +I G + KEA+
Sbjct: 294 DHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALL 353
Query: 209 MFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQ-VKSKQKSDTLMLNSLID 267
+F + + G P+DVTM+S+ AC LG +++ +H Y+ + +K + +L SLID
Sbjct: 354 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR-TSLID 412
Query: 268 MYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327
MY KCG ++ A++VF I ++SSW +MI G+A +G A+ + D F MR+ GI+P+ +T
Sbjct: 413 MYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDIT 472
Query: 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387
FVG+LSAC H G + G+H F M Y++ P+ HYGCM+DLLG +GL +EA M+ M
Sbjct: 473 FVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMM 532
Query: 388 PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVE 447
M+ + VIW L+ AC+ GNV++GE A++L ++EP + G+YV+LSNIYAS G W EV
Sbjct: 533 EMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVA 592
Query: 448 RIRAVMKHRNLAKIPAYS 465
+ RA++ + + K+P S
Sbjct: 593 KTRALLNDKGMKKVPGCS 610
|
|
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 155/453 (34%), Positives = 259/453 (57%)
Query: 15 MKSSHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNL-LQLNQIYAH 73
+ + +P+L + K ++ R+ + I A + + +H + VA ++ CT + + YA
Sbjct: 27 VNTQNPIL-LISKCNSLRELMQIQAYA--IKSHIEDVSFVAKLINFCTESPTESSMSYAR 83
Query: 74 IIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQ 133
+ M F N++ R Y+R P + +++ + G+LPD YT P +LKA
Sbjct: 84 HLFEAMSEPDIVIF--NSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 134 LFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAI 193
ALE GRQLH L+++LGL+ N + I++Y++ D + AR VFD E + +NA+
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 194 IAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKS 253
I G ++ R EA+ +F ++ +P+++T++SV S+C LG L+L +HKY K
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYA---KK 258
Query: 254 KQKSDTLMLNS-LIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDC 312
+ +N+ LIDM+ KCG +D A +F ++ + +W++MIV YA +G A +++
Sbjct: 259 HSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLM 318
Query: 313 FHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLG 372
F MR ++P+ +TF+G+L+AC H G+V+EG+ +F M + + I P HYG MVDLL
Sbjct: 319 FERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLS 378
Query: 373 RAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVV 432
RAG LE+A ++ +P+ ++W L+ AC N+ + E V++ + EL+ G YV+
Sbjct: 379 RAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVI 438
Query: 433 LSNIYASRGLWEEVERIRAVMKHRNLAKIPAYS 465
LSN+YA WE V+ +R VMK R K+P S
Sbjct: 439 LSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCS 471
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 149/377 (39%), Positives = 226/377 (59%)
Query: 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAV 148
W +I Y++ + +KAL++ + M R V P+ YT VL+ SC + R LH +
Sbjct: 130 WTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLR-SCN--GMSDVRMLHCGII 186
Query: 149 RLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAID 208
+ GLES+ F S I +++K G+ E A VFDE WN+II G +Q+ R+ A++
Sbjct: 187 KEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALE 246
Query: 209 MFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDM 268
+F +K+ GF + T+ SV AC L LEL +Q H ++ VK Q D ++ N+L+DM
Sbjct: 247 LFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI--VKYDQ--DLILNNALVDM 302
Query: 269 YGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTF 328
Y KCG ++ A +VF ++ + +V +W++MI G A NG + EAL F M+ SG +PN++T
Sbjct: 303 YCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITI 362
Query: 329 VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMP 388
VGVL AC H G +++G ++F MK +Y I+P HYGCM+DLLG+AG L++A ++ M
Sbjct: 363 VGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEME 422
Query: 389 MKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448
+ + V W L+GAC N+ + E+ AK + L+P G Y +LSNIYA+ W+ VE
Sbjct: 423 CEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEE 482
Query: 449 IRAVMKHRNLAKIPAYS 465
IR M+ R + K P S
Sbjct: 483 IRTRMRDRGIKKEPGCS 499
|
|
| TAIR|locus:4515103421 AT4G19191 "AT4G19191" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 152/379 (40%), Positives = 215/379 (56%)
Query: 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQL-FALEIGRQLHSLA 147
WN++ + Y+ A +Y M R PD T I L ASCQ L GR +HS A
Sbjct: 224 WNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTF-INLAASCQNPETLTQGRLIHSHA 282
Query: 148 VRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAI 207
+ LG + + + FIS+YSK+ D AR +FD R SW +I+G ++ G EA+
Sbjct: 283 IHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEAL 342
Query: 208 DMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLID 267
+F + K G +PD VT++S+ S CG G LE + + ++ + ++ N+LID
Sbjct: 343 ALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARA-DIYGCKRDNVMICNALID 401
Query: 268 MYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327
MY KCG + A +F + V +WT+MI GYA NG+ EAL F M + +PNH+T
Sbjct: 402 MYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHIT 461
Query: 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387
F+ VL AC H G +++G +F +MK VY I P HY CMVDLLGR G LEEA ++ M
Sbjct: 462 FLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNM 521
Query: 388 PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVE 447
K + IWG L+ AC+ NVK+ E A+ L LEP YV ++NIYA+ G+W+
Sbjct: 522 SAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFA 581
Query: 448 RIRAVMKHRNLAKIPAYSL 466
RIR++MK RN+ K P S+
Sbjct: 582 RIRSIMKQRNIKKYPGESV 600
|
|
| TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 174/477 (36%), Positives = 260/477 (54%)
Query: 6 PGISLSSLRMKSSHPLLHRLCKTHTFRKHVTISAASSFLDTH-EDPAKIVATQLSKCTNL 64
P S S+ + H + L +T + + A + T+ E+PA + K +
Sbjct: 35 PASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFL--YGK---I 89
Query: 65 LQLNQIYAHI---IRTHMLHSYSAAFHWNNIIRLYTR-LEAPKKALDIYIFMSRAGVL-P 119
LQL+ ++ + R ++F WN +IR + ++A +Y M G P
Sbjct: 90 LQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSP 149
Query: 120 DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVF 179
D +T P VLKA +F G+Q+H V+ G + + +G I LY G + ARKVF
Sbjct: 150 DKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 209
Query: 180 DENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLE 239
DE PER L SWN++I L + G A+ +F +++ FEPD TM SV SAC LG L
Sbjct: 210 DEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLS 268
Query: 240 LALQVHKYVFQVKSKQKS-DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIV 298
L H ++ + + D L+ NSLI+MY KCG + +A +VF + + +++SW +MI+
Sbjct: 269 LGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMIL 328
Query: 299 GYAANGLANEALDCFHYM--RESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ 356
G+A +G A EA++ F M + +RPN VTFVG+L AC H G V +G+ +F+MM Y
Sbjct: 329 GFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYC 388
Query: 357 IEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFG-NVKMGEWV 415
IEP HYGC+VDL+ RAG + EA MV MPMK + VIW L+ AC K G +V++ E +
Sbjct: 389 IEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEI 448
Query: 416 AKHL---QELEPWSDG----AYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYS 465
A+++ +E S+G AYV+LS +YAS W +V +R +M + K P S
Sbjct: 449 ARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCS 505
|
|
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 664 (238.8 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 142/354 (40%), Positives = 208/354 (58%)
Query: 108 IYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQL-HSLAVRLGLESNEFCESGFISLY 166
IY F+ V D + L ++ +++ R+ ++VR N F + +S Y
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR-----NLFVSTAMVSGY 288
Query: 167 SKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMV 226
SK G + A+ +FD+ ++ L W +I+ + +EA+ +F + G +PD V+M
Sbjct: 289 SKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMF 348
Query: 227 SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID 286
SV SAC +LG L+ A VH + V + S+ + N+LI+MY KCG +D VF ++
Sbjct: 349 SVISACANLGILDKAKWVHSCI-HVNGLE-SELSINNALINMYAKCGGLDATRDVFEKMP 406
Query: 287 QPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346
+ NV SW+SMI + +G A++AL F M++ + PN VTFVGVL C H G V+EGK
Sbjct: 407 RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKK 466
Query: 347 FFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKF 406
F M + Y I P+ HYGCMVDL GRA LL EA ++E MP+ +NVVIWG LM AC
Sbjct: 467 IFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIH 526
Query: 407 GNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460
G +++G++ AK + ELEP DGA V++SNIYA WE+V IR VM+ +N+ K
Sbjct: 527 GELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFK 580
|
|
| TAIR|locus:2011892 AT1G50270 "AT1G50270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 143/378 (37%), Positives = 226/378 (59%)
Query: 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAV 148
W +I + R + +A+ ++ M + GV + T+ VLKA+ ++ + GR +H L +
Sbjct: 172 WTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYL 231
Query: 149 RLG-LESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAI 207
G ++ + F S + +Y K ++ A+KVFDE P R + +W A+IAG Q + +
Sbjct: 232 ETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGM 291
Query: 208 DMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLID 267
+F + K P++ T+ SV SAC +G L +VH Y+ +K+ + +T +LID
Sbjct: 292 LVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYM--IKNSIEINTTAGTTLID 349
Query: 268 MYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327
+Y KCG ++ A VF + + NV +WT+MI G+AA+G A +A D F+ M S + PN VT
Sbjct: 350 LYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVT 409
Query: 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387
F+ VLSAC HGG V+EG+ F MK + +EP+ HY CMVDL GR GLLEEA+A++E M
Sbjct: 410 FMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERM 469
Query: 388 PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVE 447
PM+ V+WG L G+C + ++G++ A + +L+P G Y +L+N+Y+ W+EV
Sbjct: 470 PMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVA 529
Query: 448 RIRAVMKHRNLAKIPAYS 465
R+R MK + + K P +S
Sbjct: 530 RVRKQMKDQQVVKSPGFS 547
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 138/315 (43%), Positives = 201/315 (63%)
Query: 155 NEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLK 214
N E+ IS Y+ A + AR +F + ER + SWNA+IAG +Q+G +EA+ +F LK
Sbjct: 319 NVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLK 378
Query: 215 KCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV----FQVKSKQKSDTLMLNSLIDMYG 270
+ P + ++ AC L +L L +Q H +V F+ +S ++ D + NSLIDMY
Sbjct: 379 RESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYV 438
Query: 271 KCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVG 330
KCG ++ Y VF ++ + + SW +MI+G+A NG NEAL+ F M ESG +P+H+T +G
Sbjct: 439 KCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIG 498
Query: 331 VLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMK 390
VLSAC H G V+EG+H+F M + + P HY CMVDLLGRAG LEEA++M+E MPM+
Sbjct: 499 VLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQ 558
Query: 391 ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIR 450
+ VIWG L+ AC+ N+ +G++VA+ L E+EP + G YV+LSN+YA G WE+V +R
Sbjct: 559 PDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVR 618
Query: 451 AVMKHRNLAKIPAYS 465
M+ + K P S
Sbjct: 619 KSMRKEGVTKQPGCS 633
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3ECB8 | PP128_ARATH | No assigned EC number | 0.6068 | 0.9341 | 0.9421 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 471 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-89 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-84 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-54 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-33 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 289 bits (742), Expect = 3e-89
Identities = 150/414 (36%), Positives = 226/414 (54%), Gaps = 7/414 (1%)
Query: 55 ATQLSKCTNLLQLNQIYAHIIRTHMLHS---YSAAFHWNNIIRLYTRLEAPKKALDIYIF 111
A +S C +L+Q+ + S A W +I Y + P KAL+ Y
Sbjct: 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 112 MSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD 171
M + V PD T+ VL A L L++G +LH LA R GL S + I +YSK
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 172 FEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSA 231
+KA +VF PE+ + SW +IIAGL + R EA+ +F +P+ VT+++ SA
Sbjct: 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL-IFFRQMLLTLKPNSVTLIAALSA 498
Query: 232 CGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVS 291
C +G L ++H +V +++ D + N+L+D+Y +CGRM+ A+ F + +V
Sbjct: 499 CARIGALMCGKEIHAHV--LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVV 555
Query: 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMM 351
SW ++ GY A+G + A++ F+ M ESG+ P+ VTF+ +L AC G V +G +F M
Sbjct: 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
Query: 352 KNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKM 411
+ Y I P HY C+VDLLGRAG L EA + MP+ + +WG L+ AC +V++
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675
Query: 412 GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYS 465
GE A+H+ EL+P S G Y++L N+YA G W+EV R+R M+ L P S
Sbjct: 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 274 bits (701), Expect = 1e-84
Identities = 127/379 (33%), Positives = 201/379 (53%), Gaps = 2/379 (0%)
Query: 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSL 146
W II ++A ++ M G + T ++L+AS L + G+QLH
Sbjct: 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249
Query: 147 AVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEA 206
++ G+ + F I +YSK GD E AR VFD PE+ +WN+++AG + G ++EA
Sbjct: 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA 309
Query: 207 IDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLI 266
+ ++ ++ G D T + L LE A Q H + +++ D + +L+
Sbjct: 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL--IRTGFPLDIVANTALV 367
Query: 267 DMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV 326
D+Y K GRM+ A VF + + N+ SW ++I GY +G +A++ F M G+ PNHV
Sbjct: 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427
Query: 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEG 386
TF+ VLSAC + G ++G F+ M ++I+PR HY CM++LLGR GLL+EA AM+
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
Query: 387 MPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEV 446
P K V +W L+ AC N+++G A+ L + P YVVL N+Y S G E
Sbjct: 488 APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547
Query: 447 ERIRAVMKHRNLAKIPAYS 465
++ +K + L+ PA +
Sbjct: 548 AKVVETLKRKGLSMHPACT 566
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (496), Expect = 2e-54
Identities = 105/314 (33%), Positives = 163/314 (51%), Gaps = 12/314 (3%)
Query: 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSL 146
F WN ++ Y + +AL +Y M AGV PD YT P VL+ + L GR++H+
Sbjct: 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212
Query: 147 AVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEA 206
VR G E + + I++Y K GD AR VFD P R SWNA+I+G ++G E
Sbjct: 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272
Query: 207 IDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLI 266
+++F +++ +PD +T+ SV SAC LGD L ++H YV VK+ D + NSLI
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV--VKTGFAVDVSVCNSLI 330
Query: 267 DMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV 326
MY G A KVF ++ + SWT+MI GY NGL ++AL+ + M + + P+ +
Sbjct: 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
Query: 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHY----GCMVDLLGRAGLLEEARA 382
T VLSAC G + G E+ + Y ++++ + +++A
Sbjct: 391 TIASVLSACACLGDLDVGVKLHELAERK-----GLISYVVVANALIEMYSKCKCIDKALE 445
Query: 383 MVEGMPMKANVVIW 396
+ +P K +V+ W
Sbjct: 446 VFHNIPEK-DVISW 458
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 1e-33
Identities = 78/273 (28%), Positives = 135/273 (49%), Gaps = 9/273 (3%)
Query: 151 GLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMF 210
G E +++ + + ++ K G AR++FDE PER L SW II GL G +EA +F
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212
Query: 211 IGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYG 270
+ + G + + T V + A LG Q+H +K+ DT + +LIDMY
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH--CCVLKTGVVGDTFVSCALIDMYS 270
Query: 271 KCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVG 330
KCG ++ A VF + + +W SM+ GYA +G + EAL ++ MR+SG+ + TF
Sbjct: 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330
Query: 331 VLSACVHGGKVQEGKHFFE-MMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPM 389
++ ++ K +++ + ++ +VDL + G +E+AR + + MP
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLD--IVANTALVDLYSKWGRMEDARNVFDRMPR 388
Query: 390 KANVVIWGCLMGACEKFGNVKMGEWVAKHLQEL 422
K N++ W L+ +GN G + + +
Sbjct: 389 K-NLISWNALIAG---YGNHGRGTKAVEMFERM 417
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-31
Identities = 81/265 (30%), Positives = 129/265 (48%), Gaps = 16/265 (6%)
Query: 145 SLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAK 204
SL VRLG + +S++ + G+ A VF + PER L SWN ++ G ++ G
Sbjct: 118 SLGVRLG--------NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFD 169
Query: 205 EAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNS 264
EA+ ++ + G PD T V CG + DL +VH +V V+ + D ++N+
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV--VRFGFELDVDVVNA 227
Query: 265 LIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN 324
LI MY KCG + A VF + + + SW +MI GY NG E L+ F MRE + P+
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 325 HVTFVGVLSACVHGGKVQEGK--HFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARA 382
+T V+SAC G + G+ H + ++K + ++ ++ + G EA
Sbjct: 288 LMTITSVISACELLGDERLGREMHGY-VVKTGFAVDVSV--CNSLIQMYLSLGSWGEAEK 344
Query: 383 MVEGMPMKANVVIWGCLMGACEKFG 407
+ M K + V W ++ EK G
Sbjct: 345 VFSRMETK-DAVSWTAMISGYEKNG 368
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 6/227 (2%)
Query: 178 VFDENPERKLG-SWNAIIAGLSQDGRAKEAIDMFIGLK-KCGFEPDDVTMVSVTSACGSL 235
D+ RK G S + I L GR +EA+++F L+ C F T ++ AC +L
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL 136
Query: 236 GDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTS 295
+ V+ +V S + D M+N ++ M+ KCG + A ++F E+ + N++SW +
Sbjct: 137 KSIRCVKAVYWHV--ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGT 194
Query: 296 MIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVY 355
+I G G EA F M E G TFV +L A G + G+ +
Sbjct: 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254
Query: 356 QIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGA 402
+ F ++D+ + G +E+AR + +GMP K V W ++
Sbjct: 255 VVGDTFVSCA-LIDMYSKCGDIEDARCVFDGMPEKT-TVAWNSMLAG 299
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 39/197 (19%)
Query: 230 SACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID--- 286
S C S D++ AL+V + V ++ K+D + +LI K G++D ++VF E+
Sbjct: 445 SVCASSQDIDGALRVLRLV--QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502
Query: 287 -QPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGK 345
+ NV ++ ++I G A G +A + MR ++P+ V F ++SAC G V
Sbjct: 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD--- 559
Query: 346 HFFEMMKNVYQIEPRFAHYGCMVDLLGRA-GLLEEARAMVEGMPMKANVVIWGCLMGACE 404
RA +L E +A E P+ + + G LM AC
Sbjct: 560 ---------------------------RAFDVLAEMKA--ETHPIDPDHITVGALMKACA 590
Query: 405 KFGNVKMGEWVAKHLQE 421
G V + V + + E
Sbjct: 591 NAGQVDRAKEVYQMIHE 607
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 4e-11
Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 54/311 (17%)
Query: 191 NAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQ 250
N+ + L G+ ++A+ + +++ D+ V++ C +E +V
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL- 113
Query: 251 VKSKQKSDTLML-NSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEA 309
S S + L N+++ M+ + G + A+ VF ++ + ++ SW ++ GYA G +EA
Sbjct: 114 --SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA 171
Query: 310 LDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369
L +H M +G+RP+ TF VL C GG + V+ RF + VD
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTC--GGIPD-----LARGREVHAHVVRFG-FELDVD 223
Query: 370 LLG-------RAGLLEEARAMVEGMPMKA----NVVIWG------CLMG----------- 401
++ + G + AR + + MP + N +I G CL G
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 402 -------------ACEKFGNVKMGEWVAKHLQELEPWSDGA-YVVLSNIYASRGLWEEVE 447
ACE G+ ++G + ++ + D + L +Y S G W E E
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 448 RIRAVMKHRNL 458
++ + M+ ++
Sbjct: 344 KVFSRMETKDA 354
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 3e-10
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337
P+V ++ ++I GY G EAL F+ M++ GI+PN T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 70/331 (21%), Positives = 146/331 (44%), Gaps = 36/331 (10%)
Query: 105 ALDIYIFMSRAGVLPDC--YTLPIVLKASC----QLFALEIGRQLHSLAVRLGLESNEFC 158
AL + + AG+ DC YT I A +F E+ H + G+E+N
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF--EV---FHEMVNA-GVEANVHT 509
Query: 159 ESGFISLYSKAGDFEKARKVF------DENPERKLGSWNAIIAGLSQDGRAKEAIDMFIG 212
I ++AG KA + + P+R + +NA+I+ Q G A D+
Sbjct: 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV--FNALISACGQSGAVDRAFDVLAE 567
Query: 213 LK--KCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV--FQVKSKQKSDTLMLNSLIDM 268
+K +PD +T+ ++ AC + G ++ A +V++ + + +K + T+ +NS
Sbjct: 568 MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS---- 623
Query: 269 YGKCGRMDLAYKVFWEIDQPNVSS---WTSMIVGYAAN-GLANEALDCFHYMRESGIRPN 324
+ G D A ++ ++ + V + S +V A + G ++A + R+ GI+
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683
Query: 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMV 384
V++ ++ AC + ++ +E +K++ ++ P + ++ L L +A ++
Sbjct: 684 TVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVL 742
Query: 385 EGMP---MKANVVIWGCLMGACEKFGNVKMG 412
M + N + + L+ A E+ + +G
Sbjct: 743 SEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 55/264 (20%), Positives = 115/264 (43%), Gaps = 26/264 (9%)
Query: 89 WNNIIRLYTRLEAPKKALDIYIFMSRAG--VLPDCYTLPIVLKASCQL----FALEIGRQ 142
+N +I + A +A D+ M + PD T+ ++KA A E+ +
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 143 LHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDE------NPERKLGSWNAIIAG 196
+H ++ E + ++ S+ GD++ A ++D+ P+ S A++
Sbjct: 605 IHEYNIKGTPE----VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS--ALVDV 658
Query: 197 LSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK 256
G +A ++ +K G + V+ S+ AC + + + AL++++ +KS +
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE---DIKSIKL 715
Query: 257 SDTL-MLNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALD 311
T+ +N+LI + ++ A +V E+ + PN +++ ++V A+ LD
Sbjct: 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775
Query: 312 CFHYMRESGIRPNHVTFVGVLSAC 335
+E GI+PN V + C
Sbjct: 776 LLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVT 224
++N +I G + G+ +EA+ +F +KK G +P+ T
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 23/217 (10%)
Query: 199 QDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD 258
Q RAKE M + + + ++C GD + AL ++ + K K D
Sbjct: 594 QVDRAKEVYQM---IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM--KKKGVKPD 648
Query: 259 TLMLNSLIDMYGKCGRMDLAYKVFWEID----QPNVSSWTSMIVGYAAN-GLANEALDCF 313
+ ++L+D+ G G +D A+++ + + S++S++ G +N +AL+ +
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GACSNAKNWKKALELY 707
Query: 314 HYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR 373
++ +RP T +++A G ++ + MK + + P Y ++ R
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASER 766
Query: 374 AG-------LLEEARAMVEGMPMKANVVIWGCLMGAC 403
LL +A+ +G+ K N+V+ C+ G C
Sbjct: 767 KDDADVGLDLLSQAKE--DGI--KPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPN 324
++ ++I G G EAL+ F M+E GI P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 291 SSWTSMIVGYAANGLANEALDCFHYMRESGI 321
++ S+I GY G EAL+ F M+E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQ 133
+N +I Y + ++AL ++ M + G+ P+ YT I++ C+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD 222
++N +I GL + GR +EA+++F +K+ G EPD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.71 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.52 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.52 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.41 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.23 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.22 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.17 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.12 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.11 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.1 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.09 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.07 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.02 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.01 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.99 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.98 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.92 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.92 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.9 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.78 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.74 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.74 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.71 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.59 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.58 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.55 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.55 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.45 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.42 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.41 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.41 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.4 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.36 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.33 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.31 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.28 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.27 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.26 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.21 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.19 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.15 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.13 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.1 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.1 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.1 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.05 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.03 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.02 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.02 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.0 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.0 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.99 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.94 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.91 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.9 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.84 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.8 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.8 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.79 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.74 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.72 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.72 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.72 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.66 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.65 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.64 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.62 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.62 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.6 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.57 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.57 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.56 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.56 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.54 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.53 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.52 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.52 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.51 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.5 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.47 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.46 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.45 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.42 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.4 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.4 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.37 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.33 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.33 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.29 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.22 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.19 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.19 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.19 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.19 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.17 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.14 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.1 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.08 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.05 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.89 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.88 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.85 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.84 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.83 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.74 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.73 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.69 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.67 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.6 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.6 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.56 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.53 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.45 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.45 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.43 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.42 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.36 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.3 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.25 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.23 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.14 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.09 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.93 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.92 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.92 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.92 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.91 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.86 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.83 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.75 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.75 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.58 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.5 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.12 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.96 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.92 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.91 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.84 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.69 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.62 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.61 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.58 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.37 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.34 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.33 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.28 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.07 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.92 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.9 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.69 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.58 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.58 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.56 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.49 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.22 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.17 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.12 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.97 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.94 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.92 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.85 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.7 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.52 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.5 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.44 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.44 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.34 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.2 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.2 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.08 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.07 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.75 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.64 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.53 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.46 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.3 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.28 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.28 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.26 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.23 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.1 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.02 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.63 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.61 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.33 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.25 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.22 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 90.13 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.08 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.03 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.33 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.0 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.74 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.58 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.5 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.36 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.23 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.75 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.69 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.62 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.51 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.86 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.74 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.73 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.58 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.58 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.47 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.43 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.11 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.08 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.04 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.92 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.66 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.36 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.85 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.81 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.39 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.35 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 84.03 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.91 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.71 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.46 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 82.23 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 81.77 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 81.7 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-73 Score=571.16 Aligned_cols=447 Identities=29% Similarity=0.480 Sum_probs=437.7
Q ss_pred ccchhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHH
Q 012101 16 KSSHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRL 95 (471)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 95 (471)
..+..++..|++.+..+.+.+++..+...|+.||+. +++.|+.+|++ .|++++|+++|++|+. ||..+||++|.+
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~-~~n~Li~~y~k---~g~~~~A~~lf~~m~~-~~~~t~n~li~~ 198 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY-MMNRVLLMHVK---CGMLIDARRLFDEMPE-RNLASWGTIIGG 198 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHhc---CCCHHHHHHHHhcCCC-CCeeeHHHHHHH
Confidence 348889999999999999999999999999999999 99999999999 7889999999999986 899999999999
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhH
Q 012101 96 YTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 96 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 175 (471)
|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+++|++.|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCC
Q 012101 176 RKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQ 255 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 255 (471)
.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.| .+.|+
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m--~~~g~ 356 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL--IRTGF 356 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH--HHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 256 KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 256 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
.||..+|++|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++++.+|...|+++.|..+
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceeec
Q 012101 416 AKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATR 469 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 469 (471)
++++.+.+|.+..+|..|+++|++.|+|++|.++++.|++.|+.+.||+||++-
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~ 570 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEE
Confidence 999999999888999999999999999999999999999999999999999973
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-69 Score=556.65 Aligned_cols=442 Identities=33% Similarity=0.580 Sum_probs=432.7
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYT 97 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 97 (471)
+..++.+|++..+.+.+.+++......|+.||.. +||+|+.+|++ .|++++|.++|++|+. ||..+||++|.+|+
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~-~~n~Li~~y~k---~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~ 365 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVS-VCNSLIQMYLS---LGSWGEAEKVFSRMET-KDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH-HHHHHHHHHHh---cCCHHHHHHHHhhCCC-CCeeeHHHHHHHHH
Confidence 7789999999999999999999999999999999 99999999999 7889999999999985 79999999999999
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHH
Q 012101 98 RLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARK 177 (471)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 177 (471)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+++|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC
Q 012101 178 VFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS 257 (471)
Q Consensus 178 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (471)
+|++|.++|+++||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+ .+.|+.+
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~--~~~g~~~ 522 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV--LRTGIGF 522 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH--HHhCCCc
Confidence 99999999999999999999999999999999999986 58999999999999999999999999999999 9999999
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
+..++++|+++|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAK 417 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 417 (471)
.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.+|...|+.+.++...+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999877899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceee
Q 012101 418 HLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLAT 468 (471)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~ 468 (471)
++.++.|.+...|..|.+.|+..|+|++|.++.+.|++.|+++.||+||++
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 999999999999999999999999999999999999999999999999997
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-65 Score=522.48 Aligned_cols=432 Identities=24% Similarity=0.359 Sum_probs=379.1
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYT 97 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 97 (471)
+..+++.|+...++..+.+++......|+.+++. ++|+||.+|++ .|++++|..+|++|+. ||+.+||++|.+|+
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~n~Li~~y~k---~g~~~~A~~lf~~m~~-~d~~s~n~li~~~~ 264 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD-VVNALITMYVK---CGDVVSARLVFDRMPR-RDCISWNAMISGYF 264 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc-hHhHHHHHHhc---CCCHHHHHHHHhcCCC-CCcchhHHHHHHHH
Confidence 6677888888888888888888888888999999 99999999999 7889999999999986 78999999999999
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHH
Q 012101 98 RLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARK 177 (471)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 177 (471)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.+
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC
Q 012101 178 VFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS 257 (471)
Q Consensus 178 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (471)
+|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+ .+.|+.|
T Consensus 345 vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~--~~~g~~~ 422 (857)
T PLN03077 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA--ERKGLIS 422 (857)
T ss_pred HHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH--HHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
+..+|++|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999986 599999999999999999
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAK 417 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 417 (471)
.|+.+.+.+++..+.+. |+.++..++++||++|+++|++++|.++|+.+ .||..+|++++.+|++.|+.++|.++|+
T Consensus 502 ~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 502 IGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999888888888655 77776666666666666666666666666665 5566666666666666666666666666
Q ss_pred HHHhcC-CCCCchHHHHHHHHHcCCChHHHHHHHHHhh-cCCCcc
Q 012101 418 HLQELE-PWSDGAYVVLSNIYASRGLWEEVERIRAVMK-HRNLAK 460 (471)
Q Consensus 418 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~ 460 (471)
+|.+.+ .++..+|..++.+|.+.|++++|.++|+.|. +.|+.+
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 666555 2244566666666666666666666666665 344443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=497.55 Aligned_cols=438 Identities=14% Similarity=0.222 Sum_probs=409.2
Q ss_pred cchhHHHHHHhhhchhhhhHHHHhhhccCC-CCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHH
Q 012101 17 SSHPLLHRLCKTHTFRKHVTISAASSFLDT-HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRL 95 (471)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 95 (471)
.+..++.++++..+++.+..+++.+..-+. .++.. +++.++..|.+ .|.+.+|..+|+.|+. ||..+||.+|.+
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v-~~~~li~~~~~---~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a 446 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI-YHAKFFKACKK---QRAVKEAFRFAKLIRN-PTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH-HHHHHHHHHHH---CCCHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 367788889998999999999998887775 45666 88889999999 7889999999999987 999999999999
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhH
Q 012101 96 YTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 96 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 175 (471)
|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCC----CCCcchHHHHHHHHHcCCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHH
Q 012101 176 RKVFDENP----ERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKK--CGFEPDDVTMVSVTSACGSLGDLELALQVHKYVF 249 (471)
Q Consensus 176 ~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 249 (471)
.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M- 605 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI- 605 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 99999986 47888999999999999999999999999986 679999999999999999999999999999999
Q ss_pred HhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 250 QVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
.+.++.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.+++++|.+.|+.||.
T Consensus 606 -~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 -HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred -HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 8999999999999999999999999999999999985 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM---PMKANVVIWGCLMGA 402 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~l~~~ 402 (471)
.+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.||.+|++.|++++|.++|++| ++.||..||+.++.+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999765 99999999999999999999999999999999 899999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CCCchHHHHHHHHH----cCC-------------------ChHHHHHHHHHhhcCCC
Q 012101 403 CEKFGNVKMGEWVAKHLQELEP-WSDGAYVVLSNIYA----SRG-------------------LWEEVERIRAVMKHRNL 458 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~m~~~~~ 458 (471)
|++.|+++.|.+++++|.+.+. ++..+|+.++.+|. +++ ..++|..+|++|.+.|+
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 9999999999999999999884 34568888876643 221 23679999999999999
Q ss_pred ccCC
Q 012101 459 AKIP 462 (471)
Q Consensus 459 ~~~~ 462 (471)
.|..
T Consensus 844 ~Pd~ 847 (1060)
T PLN03218 844 LPTM 847 (1060)
T ss_pred CCCH
Confidence 7653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=495.80 Aligned_cols=438 Identities=16% Similarity=0.210 Sum_probs=407.4
Q ss_pred ccchhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC---CCchhhHHHH
Q 012101 16 KSSHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS---YSAAFHWNNI 92 (471)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~l 92 (471)
..|..++..|++..+.+.+..++..+...|+.||.. +|++||.+|++ .|+++.|.++|++|.. .||..+||.+
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~-tynsLI~~y~k---~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK-LYTTLISTCAK---SGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHh---CcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 347889999999999999999999999999999999 99999999999 7889999999999974 5899999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH--hCCCCCcchHHHHHHHHHhcC
Q 012101 93 IRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVR--LGLESNEFCESGFISLYSKAG 170 (471)
Q Consensus 93 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g 170 (471)
|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 578999999999999999999
Q ss_pred ChhhHHHHhccCCCC----CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHH
Q 012101 171 DFEKARKVFDENPER----KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHK 246 (471)
Q Consensus 171 ~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 246 (471)
++++|.++|+.|.+. +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999765 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC----CCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 012101 247 YVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID----QPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIR 322 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 322 (471)
.| .+.|+.|+..+|++++.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|.++|++|.+.|+.
T Consensus 674 eM--~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 674 DA--RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HH--HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99 899999999999999999999999999999999995 499999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----c-------------------CCHHH
Q 012101 323 PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR----A-------------------GLLEE 379 (471)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~ 379 (471)
||..||+.++.+|++.|+++.|.++|++|.+. |+.||..+|+.++..|.+ + +..++
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 99999999999999999999999999999766 999999999999876432 2 22467
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 380 ARAMVEGM---PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELE-PWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 380 A~~~~~~m---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
|..+|++| |+.||..||+.++.++++.+....+..+++.+...+ +++..+|+.+++++.+. .++|..++++|..
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999 999999999999988888999999999998876554 45567999999998432 3689999999999
Q ss_pred CCCccCC
Q 012101 456 RNLAKIP 462 (471)
Q Consensus 456 ~~~~~~~ 462 (471)
.|+.+..
T Consensus 909 ~Gi~p~~ 915 (1060)
T PLN03218 909 LGVVPSV 915 (1060)
T ss_pred cCCCCCc
Confidence 9997655
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-57 Score=454.53 Aligned_cols=382 Identities=23% Similarity=0.346 Sum_probs=361.4
Q ss_pred HhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCC
Q 012101 76 RTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAG-VLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLES 154 (471)
Q Consensus 76 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 154 (471)
.+...+.+++..+|+.+|.++.+.|++++|+++|++|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred hcccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc
Confidence 34444555677899999999999999999999999998765 78999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 155 NEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
|..+|+.|+.+|++.|++++|.++|++|+++|+++||+++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHH
Q 012101 235 LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFH 314 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 314 (471)
.|+.+.+.+++..+ .+.|+.+|..+|++|+++|+++|++++|.++|++|.++|+.+||++|.+|++.|++++|.++|+
T Consensus 237 ~~~~~~~~~l~~~~--~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 237 LGSARAGQQLHCCV--LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred CCcHHHHHHHHHHH--HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH
Q 012101 315 YMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVV 394 (471)
Q Consensus 315 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 394 (471)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|+.||++|+++|++++|.++|++|. .||..
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~ 392 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLI 392 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCee
Confidence 9999999999999999999999999999999999999776 999999999999999999999999999999995 47999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHcCCChHHHHHHHHHhhc-CCCccC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELE-PWSDGAYVVLSNIYASRGLWEEVERIRAVMKH-RNLAKI 461 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~ 461 (471)
+|+++|.+|++.|+.++|.++|++|.+.+ .++..+|..++.+|.+.|++++|.++|+.|.+ .|+.+.
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999887 34567899999999999999999999999976 466543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-27 Score=244.88 Aligned_cols=420 Identities=11% Similarity=0.042 Sum_probs=206.3
Q ss_pred HHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhC
Q 012101 22 LHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRL 99 (471)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~ 99 (471)
........+++.+..+...... ...+++. ++..+...|.+ .|++++|...|++... +.+...+..+...+...
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~-~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEK-KQPDNAS-LHNLLGAIYLG---KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH-hCCCCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 3334444445544444432211 1222334 56666666665 5556666666655421 23344555555666666
Q ss_pred CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHh
Q 012101 100 EAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVF 179 (471)
Q Consensus 100 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 179 (471)
|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..+...|.+.|++++|.+++
T Consensus 513 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666665543 2244455555555555666666666666555443 333444555555555556666655555
Q ss_pred ccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC
Q 012101 180 DENPE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK 256 (471)
Q Consensus 180 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 256 (471)
+.+.. .+...|..+...+...|++++|+..|+++.+.. +.+...+..+..++.+.|++++|...++.+ .+.. +
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~-~ 666 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA--LELK-P 666 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcC-C
Confidence 55432 233355555555555555555555555555432 233444555555555555555555555555 3221 2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
.+...+..+...+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+++...+ |+..++..+..
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 2344455555555555555555555555443 233444444455555555555555555554432 22234444444
Q ss_pred HhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMK-ANVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~~~~~~ 411 (471)
++.+.|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.|+++ ... ++..+++.+...+...|+ ++
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 455555555555555554432 1233344444444555555555555555544 222 233344444444444444 44
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 412 GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.+
T Consensus 822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4444444444444444444444444444444444444444444433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-25 Score=236.64 Aligned_cols=415 Identities=11% Similarity=-0.028 Sum_probs=282.6
Q ss_pred HHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCc
Q 012101 25 LCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAP 102 (471)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 102 (471)
+....+.+.+..... +.+...|+....+..+...+.. .|++++|...|+++.. +.+..++..+...+.+.|++
T Consensus 475 ~~~~~~~~~A~~~~~--~a~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 475 YLGKGDLAKAREAFE--KALSIEPDFFPAAANLARIDIQ---EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHhCCCHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCH
Confidence 333444444444433 3333444444366667777776 6667777777776532 34566777777777777777
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccC
Q 012101 103 KKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDEN 182 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 182 (471)
++|...++++.+.+ +.+...+..+...+.+.|++++|..+++.+.+.. +.+..+|..+...|.+.|++++|.+.|+++
T Consensus 550 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 550 EEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777776654 3355566667777777777777777777776543 455667777777777777777777777765
Q ss_pred CC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCCh
Q 012101 183 PE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDT 259 (471)
Q Consensus 183 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 259 (471)
.+ .+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+...|+++.|.++++.+ .... +.+.
T Consensus 628 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~ 703 (899)
T TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL--QKQH-PKAA 703 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhhC-cCCh
Confidence 42 234467777777777777777777777776653 445667777777777777777777777777 4433 3455
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
..+..+...+.+.|++++|...|+.+.+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|..
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 6667777777777777777777777654 555666667777777777777777777777653 4456666777777777
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
.|+.++|.++|+++.+.. +.+...+..+...+...|+ ++|...++++ ...| +..++..+..++...|++++|...
T Consensus 783 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776542 3455667777777777777 6677777776 4344 344666677777777777777777
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 416 AKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
++++.+.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 860 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 860 LRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-20 Score=176.42 Aligned_cols=292 Identities=15% Similarity=0.070 Sum_probs=168.7
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh
Q 012101 95 LYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK 174 (471)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 174 (471)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------------- 105 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------------- 105 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------------
Confidence 4456677777777777777653 2234456666666677777777777776666532111100
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcC
Q 012101 175 ARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSK 254 (471)
Q Consensus 175 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 254 (471)
....+..+...|.+.|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+ .+.+
T Consensus 106 -----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~--~~~~ 171 (389)
T PRK11788 106 -----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL--EKLG 171 (389)
T ss_pred -----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH--HHhc
Confidence 00123444445555555555555555554431 233445555555555555555555555555 3322
Q ss_pred CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 255 QKSD----TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 255 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
..+. ...+..+...+.+.|++++|...|+++.+ .+...+..+...+.+.|++++|.++++++.+.+......+
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 2111 11233444555556666666666655543 2234555566667777777777777777765532222345
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEK- 405 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~- 405 (471)
+..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|.++++++ ...|+..+++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 666677777777777777777777543 455555666777777777777777777766 556777777766666553
Q ss_pred --cCCHHHHHHHHHHHHh
Q 012101 406 --FGNVKMGEWVAKHLQE 421 (471)
Q Consensus 406 --~~~~~~a~~~~~~~~~ 421 (471)
.|+.+++..+++++.+
T Consensus 329 ~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVG 346 (389)
T ss_pred cCCccchhHHHHHHHHHH
Confidence 4467777777777765
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-18 Score=184.76 Aligned_cols=347 Identities=11% Similarity=0.024 Sum_probs=239.4
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh
Q 012101 95 LYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK 174 (471)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 174 (471)
.+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|. .++.++
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHH
Confidence 3445566666666666655542 1233444445555555666666666666655532 223334444444443 344555
Q ss_pred HHHHhccCCCCC------------cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHH
Q 012101 175 ARKVFDENPERK------------LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELAL 242 (471)
Q Consensus 175 a~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 242 (471)
|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 655555443221 1123345566777889999999998888763 334566777888888899999999
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CH---------hhHHHHHHHHHhCCChhHH
Q 012101 243 QVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP----NV---------SSWTSMIVGYAANGLANEA 309 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~~a 309 (471)
..++.+ .+.. +.+...+..+...+...++.++|...++.+... +. ..+..+...+...|+.++|
T Consensus 516 ~~l~~a--l~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 516 ALMRRL--AQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHH--HHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999888 5433 223444445555667788899999988887641 11 1122345677888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 012101 310 LDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-P 388 (471)
Q Consensus 310 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 388 (471)
..+++. .+++...+..+...+.+.|++++|...|+.+.+.. +.+...+..++..|...|++++|.+.++.. .
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 998872 24455667778888999999999999999998652 335678889999999999999999999988 5
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 389 MKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG------AYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 389 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
..| +..++..+..++...|++++|.++++++.+..+.++. .+..++..+...|++++|++.|+....
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555 4556777888999999999999999999987654432 455678889999999999999998864
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=177.44 Aligned_cols=292 Identities=12% Similarity=0.039 Sum_probs=236.0
Q ss_pred HHHHhcCChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHcCcCC
Q 012101 164 SLYSKAGDFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD---DVTMVSVTSACGSLGD 237 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~ 237 (471)
..+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455667777777777776543 334678888888889999999999988887542222 2467788899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC------HhhHHHHHHHHHhCCChhHH
Q 012101 238 LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN------VSSWTSMIVGYAANGLANEA 309 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a 309 (471)
++.|..+|+.+ .+. .+.+..++..++..+.+.|++++|.+.++.+.+ |+ ...+..+...+.+.|++++|
T Consensus 123 ~~~A~~~~~~~--l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 123 LDRAEELFLQL--VDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred HHHHHHHHHHH--HcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999 544 345677899999999999999999999999865 22 12456677788999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 310 LDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR--FAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 310 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
...++++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|...|++++|.+.++++
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998763 334567778889999999999999999999764 343 456788999999999999999999998
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc---CCChHHHHHHHHHhhcCCCccCCC
Q 012101 388 -PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS---RGLWEEVERIRAVMKHRNLAKIPA 463 (471)
Q Consensus 388 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 463 (471)
...|+...+..++..+.+.|++++|..+++++.+..|.+. .+..++..+.. .|+.+++..++++|.++++.+.|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6678877788899999999999999999999999887554 56666665553 569999999999999998888875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=165.64 Aligned_cols=377 Identities=13% Similarity=0.091 Sum_probs=306.3
Q ss_pred CCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc
Q 012101 45 DTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY 122 (471)
Q Consensus 45 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 122 (471)
...|.....|+.+.+.+-. .|++++|+..++.+-. +..+.+|..+..++...|+.+.|.+.|.+..+. .|+..
T Consensus 110 r~~~q~ae~ysn~aN~~ke---rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ 184 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILKE---RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLY 184 (966)
T ss_pred hccchHHHHHHHHHHHHHH---hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchh
Confidence 3345544577888888877 7889999998887653 346788999999999999999999999888774 46554
Q ss_pred hHHHHHH-HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcc---hHHHHHHHHH
Q 012101 123 TLPIVLK-ASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLG---SWNAIIAGLS 198 (471)
Q Consensus 123 ~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~ 198 (471)
...+-+. ..-..|..++|...|.+.++.. +-=...|+.|...+-..|++..|+..|++..+-|.. +|-.|...|.
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYK 263 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHH
Confidence 4433333 3345688899999988888753 233467888999999999999999999987765543 7899999999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 012101 199 QDGRAKEAIDMFIGLKKCGFEPD-DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDL 277 (471)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 277 (471)
..+.+++|+..|.+.... .|+ ...+..+...|...|.++.|...|++. +..... -...|+.|..++-..|++.+
T Consensus 264 e~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykra--l~~~P~-F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRA--LELQPN-FPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred HHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHH--HhcCCC-chHHHhHHHHHHHhccchHH
Confidence 999999999999888765 454 567778888889999999999999988 433221 25689999999999999999
Q ss_pred HHHHHHhcCC--C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 278 AYKVFWEIDQ--P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 278 A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
|++.|++... | ...+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++..
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal- 415 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL- 415 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-
Confidence 9999998775 3 3467888999999999999999999988774 555 4567888889999999999999999987
Q ss_pred hcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 012101 354 VYQIEPRF-AHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAY 430 (471)
Q Consensus 354 ~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 430 (471)
.+.|+. ..|+.+...|...|+.+.|.+.+.+. .+.|.. ..++.|...|...|++.+|++.++...++.|+.+..|
T Consensus 416 --rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 416 --RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred --hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 567875 57888999999999999999999988 888865 5889999999999999999999999999999988888
Q ss_pred HHHHHHH
Q 012101 431 VVLSNIY 437 (471)
Q Consensus 431 ~~l~~~~ 437 (471)
-.++-++
T Consensus 494 cNllh~l 500 (966)
T KOG4626|consen 494 CNLLHCL 500 (966)
T ss_pred hHHHHHH
Confidence 7776654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-18 Score=171.62 Aligned_cols=390 Identities=12% Similarity=-0.024 Sum_probs=275.8
Q ss_pred HHHHHHhcccccCchHHHHHHhcccC-CCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 012101 56 TQLSKCTNLLQLNQIYAHIIRTHMLH-SYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQL 134 (471)
Q Consensus 56 ~ll~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 134 (471)
.+-+.+.+ .|+++.|+..|++.- ..|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...
T Consensus 132 ~~G~~~~~---~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 132 EKGNKAYR---NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 44455666 677888888887643 34666778888888888888888888888887754 22455677777788888
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC-----------------------------C
Q 012101 135 FALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE-----------------------------R 185 (471)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------------------------~ 185 (471)
|++++|..-+......+-..+. ....++.-+......+.+...++.-+. .
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 8888887777655443211111 111111111111111122222211110 0
Q ss_pred Ccc---hHHHHHHH---HHcCCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC
Q 012101 186 KLG---SWNAIIAG---LSQDGRAKEAIDMFIGLKKCG-FEP-DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS 257 (471)
Q Consensus 186 ~~~---~~~~li~~---~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (471)
+.. .+..+... ....+++++|++.|+...+.+ ..| +...+..+...+...|++++|...++.. +... +.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka--l~l~-P~ 363 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELD-PR 363 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHcC-CC
Confidence 000 11111111 122467999999999998765 233 4456777788888999999999999998 5443 23
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA 334 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 334 (471)
+...|..+...+...|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 456788889999999999999999998765 456788999999999999999999999998863 3346667778888
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHh
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-V-------IWGCLMGACEK 405 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~l~~~~~~ 405 (471)
+.+.|++++|...|+...+.. +.+...++.+...+...|++++|.+.|++. .+.|+. . .++.....+..
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 999999999999999997642 334678888999999999999999999997 444431 1 12222233445
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 406 FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.|++++|.+++++..+..|.+...+..++.++.+.|++++|.+.|++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 699999999999999999988888999999999999999999999998654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-18 Score=185.12 Aligned_cols=390 Identities=11% Similarity=0.039 Sum_probs=299.2
Q ss_pred HHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc-chHH---------
Q 012101 58 LSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDC-YTLP--------- 125 (471)
Q Consensus 58 l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~--------- 125 (471)
-..+.. .|++++|+..|++.-. +.+...+..+...+.+.|++++|+..|++..+....... ..+.
T Consensus 276 G~~~~~---~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 276 GLAAVD---SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 344555 6889999999987643 346788999999999999999999999999876432111 1121
Q ss_pred ---HHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCC---CcchHHHHHHHHHc
Q 012101 126 ---IVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPER---KLGSWNAIIAGLSQ 199 (471)
Q Consensus 126 ---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~ 199 (471)
.....+.+.|++++|...++++.+.. +.+...+..+...+...|++++|++.|++..+. +...+..+...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 12345678999999999999999864 455667778889999999999999999986643 3446666777664
Q ss_pred CCChhHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 012101 200 DGRAKEAIDMFIGLKKCGFE--------PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK 271 (471)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (471)
.++.++|+.+++.+...... .....+..+...+...|++++|.+.+++. ++.. +-+..++..+...|.+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A--l~~~-P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR--LALD-PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHH
Confidence 46789999988776433100 01123455667788899999999999998 5543 2356778889999999
Q ss_pred cCChHHHHHHHHhcCC--C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---------HHHHHHHHhccCC
Q 012101 272 CGRMDLAYKVFWEIDQ--P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV---------TFVGVLSACVHGG 339 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~ll~~~~~~~ 339 (471)
.|++++|...|+++.+ | +...+..+...+...++.++|...++.+......++.. .+......+...|
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999998754 3 44555555556678899999999998865432222221 2234556788899
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012101 340 KVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAK 417 (471)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 417 (471)
+.++|..+++.- +.+...+..+...+.+.|++++|.+.|++. ...| +...+..+...+...|++++|++.++
T Consensus 588 ~~~eA~~~l~~~------p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQQ------PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHhC------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999998721 345556778899999999999999999998 5566 56789999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 418 HLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
.+.+..|.++..+..++.++...|++++|.++++++.......+
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 99998888888888999999999999999999999987654433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-18 Score=172.43 Aligned_cols=349 Identities=9% Similarity=-0.051 Sum_probs=271.8
Q ss_pred CchHHHHHHhcccCCC-----CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHH
Q 012101 68 NQIYAHIIRTHMLHSY-----SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQ 142 (471)
Q Consensus 68 ~~~~~a~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 142 (471)
.+++.---.|...+++ .+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++.|..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~ 97 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQ 97 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHH
Confidence 4444444444444431 23333556788889999999999999999887533 34455556667778999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 012101 143 LHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE--R-KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFE 219 (471)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 219 (471)
.++++.+.. |.+...+..+...+...|++++|.+.+++... | +...+..+...+...|++++|...++.+.....
T Consensus 98 ~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P- 175 (656)
T PRK15174 98 VVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP- 175 (656)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-
Confidence 999999865 55567788888999999999999999988654 3 455788899999999999999999998876632
Q ss_pred CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHH
Q 012101 220 PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSM 296 (471)
Q Consensus 220 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 296 (471)
.+...+..+ ..+...|++++|...++.+ .+....++......+..++.+.|++++|...|++..+ .+...+..+
T Consensus 176 ~~~~a~~~~-~~l~~~g~~~eA~~~~~~~--l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 176 PRGDMIATC-LSFLNKSRLPEDHDLARAL--LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCHHHHHHH-HHHHHcCCHHHHHHHHHHH--HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 233333333 3477889999999999998 6654444455556667889999999999999998765 456778888
Q ss_pred HHHHHhCCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 012101 297 IVGYAANGLANE----ALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLL 371 (471)
Q Consensus 297 i~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 371 (471)
...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..+. .|+ ...+..+..+|
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 999999999986 899999988763 335667888889999999999999999999765 344 45677788999
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 372 GRAGLLEEARAMVEGM-PMKANVVI-WGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
.+.|++++|.+.++++ ...|+... +..+..++...|+.++|...|+++.+..|..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 9999999999999998 56676544 4445678899999999999999999988764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=163.90 Aligned_cols=364 Identities=16% Similarity=0.175 Sum_probs=307.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch-HHHHHH
Q 012101 86 AFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFC-ESGFIS 164 (471)
Q Consensus 86 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~ 164 (471)
..+|..+...+-..|++++|+.+++.+.+... -....|..+..++...|+.+.|.+.|...++. .|+... .+.+-.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 46788999999999999999999999998642 25788999999999999999999999998874 455443 333445
Q ss_pred HHHhcCChhhHHHHhccCCC--CCc-chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcCcCCHHH
Q 012101 165 LYSKAGDFEKARKVFDENPE--RKL-GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD-DVTMVSVTSACGSLGDLEL 240 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~ 240 (471)
..-..|++++|...+.+..+ |.. ++|+.|...+-.+|+...|+..|++..+. .|+ ...|..+...|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 55667999999998877544 332 37999999999999999999999999865 454 5678889999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-HhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 012101 241 ALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN-VSSWTSMIVGYAANGLANEALDCFHYMR 317 (471)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 317 (471)
|...|... .... +-...++..+...|...|.++-|...|++..+ |+ ...|+.|..++-..|++.+|.+.|++..
T Consensus 271 Avs~Y~rA--l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRA--LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHH--HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999887 3322 22356777888889999999999999999876 44 4689999999999999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-
Q 012101 318 ESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVV- 394 (471)
Q Consensus 318 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 394 (471)
... ..-....+.|...+...|.++.|..+|....+. .|. ...++.|...|-..|++++|..-+++. .++|+..
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 752 223567888999999999999999999998754 455 456889999999999999999999998 9999864
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
.|+.+...|-..|+.+.|.+.+.+....+|.-...++.|...|-..|++.+|+.-++...+-.+.-+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 8999999999999999999999999999998778899999999999999999999999988766533
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-17 Score=164.77 Aligned_cols=190 Identities=8% Similarity=-0.031 Sum_probs=145.0
Q ss_pred HHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHH
Q 012101 266 IDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQE 343 (471)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (471)
...+...|++++|...|+++.. |+...+..+...+.+.|+.++|...+++..+.. +++...+..+.......|++++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 3444567778888777776653 444455566667777888888888888877653 2222233333344445688999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 344 GKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 344 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
|...+++..+. .|+...+..+..++.+.|++++|...+++. ...|+ ...++.+..++...|++++|+..+++..+
T Consensus 595 Al~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99888888744 577778888888999999999999999988 66664 55777788889999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 422 LEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 422 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
..|.++..+..++.++...|++++|+..+++..+..+.
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99988889999999999999999999999998776543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-18 Score=170.99 Aligned_cols=393 Identities=9% Similarity=-0.019 Sum_probs=285.5
Q ss_pred HHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 012101 56 TQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQ 133 (471)
Q Consensus 56 ~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 133 (471)
-.+..... .|+.++|+.++.+... +.+...+..+...+.+.|++++|..+|++..+.. +.+...+..+...+..
T Consensus 20 d~~~ia~~---~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 20 DWLQIALW---AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34444555 6778888888887653 2344458889999999999999999999988753 3345566777778889
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHH
Q 012101 134 LFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMF 210 (471)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 210 (471)
.|++++|...++++.+.. +.+.. +..+..++...|+.++|...+++..+. +...+..+...+...+..++|+..+
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999998763 44555 888888899999999999999886543 3345667778888889999999888
Q ss_pred HHHHHCCCCCCH------HHHHHHHHHHc-----CcCCH---HHHHHHHHHHHHhhc-CCCCChh-HHH----HHHHHHH
Q 012101 211 IGLKKCGFEPDD------VTMVSVTSACG-----SLGDL---ELALQVHKYVFQVKS-KQKSDTL-MLN----SLIDMYG 270 (471)
Q Consensus 211 ~~m~~~g~~p~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~ 270 (471)
+.... .|+. .....++.... ..+++ ++|.+.++.+ .+. ...|+.. .+. ..+.++.
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l--l~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL--EALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH--HhhcccCCccchHHHHHHHHHHHHHH
Confidence 76653 2321 11122222222 22234 6778888877 432 1222221 111 1133456
Q ss_pred hcCChHHHHHHHHhcCCCC--Hh--hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHhccCCcHHH
Q 012101 271 KCGRMDLAYKVFWEIDQPN--VS--SWTSMIVGYAANGLANEALDCFHYMRESGIRP---NHVTFVGVLSACVHGGKVQE 343 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~ 343 (471)
..|++++|+..|+.+.+.+ .. .-..+...|...|++++|...|+++.+..... .......+..++...|++++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 7799999999999988632 11 22235678899999999999999987653111 12345666677889999999
Q ss_pred HHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 012101 344 GKHFFEMMKNVYQ----------IEPR---FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGN 408 (471)
Q Consensus 344 a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~ 408 (471)
|.+.++.+..... -.|+ ...+..+...+...|++++|.+.++++ ...| +...+..+...+...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 9999999875421 0122 124456777888999999999999998 4445 56788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 409 VKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 409 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+++|++.++++.+..|.+...+..++..+.+.|++++|+++++++.+..+.
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999998888989999999999999999999999876554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-18 Score=166.90 Aligned_cols=353 Identities=9% Similarity=-0.044 Sum_probs=275.6
Q ss_pred HhCCCchHHHHHHHHHHHCC--CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh
Q 012101 97 TRLEAPKKALDIYIFMSRAG--VLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK 174 (471)
Q Consensus 97 ~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 174 (471)
.+..+++.---.|..-.++- -.-+......++..+.+.|+++.|..+++..+... +-+......++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 34455554444444332221 11234446667788899999999999999998865 3344555666677788999999
Q ss_pred HHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHh
Q 012101 175 ARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQV 251 (471)
Q Consensus 175 a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 251 (471)
|.+.|+++.+. +...+..+...+.+.|++++|+..+++..... +.+...+..+..++...|++++|...++.+ .
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~--~ 171 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ--A 171 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH--H
Confidence 99999997643 44578889999999999999999999998762 445667888899999999999999999987 5
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 252 KSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP----NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
.....+ ...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|...++++.+.. +.+...
T Consensus 172 ~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 444333 3333333 3478899999999999987652 23344556778889999999999999999764 335667
Q ss_pred HHHHHHHhccCCcHHH----HHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 012101 328 FVGVLSACVHGGKVQE----GKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLM 400 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~ 400 (471)
+..+...+...|++++ |...|+++.+. .| +...+..+...+.+.|++++|...+++. ...|+ ...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7778888999999985 89999998754 34 4567889999999999999999999998 55664 55777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 401 GACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.++.+.|++++|...++++.+..|.+...+..++.++...|++++|.+.|++..+..+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999877666666788899999999999999998877654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-16 Score=158.41 Aligned_cols=404 Identities=9% Similarity=-0.061 Sum_probs=297.3
Q ss_pred hhhhccchhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC--CCCchhhH
Q 012101 12 SLRMKSSHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH--SYSAAFHW 89 (471)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~ 89 (471)
+.........++-..-..+.+.+..+.... ....|.+...+..+...+.+ .|++.+|...+++.- .+.+...+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~--~~~~~~~a~~~~~lA~~~~~---~g~~~~A~~~~~~al~~~P~~~~a~ 86 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRY--RVHMQLPARGYAAVAVAYRN---LKQWQNSLTLWQKALSLEPQNDDYQ 86 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 334444566666666667777766555433 33344444368888888888 888999999999853 23456678
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhc
Q 012101 90 NNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKA 169 (471)
Q Consensus 90 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 169 (471)
..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 888999999999999999999998863 33445 7788888999999999999999999865 44556667788888899
Q ss_pred CChhhHHHHhccCCCCCcc--------hHHHHHHHHHc-----CCCh---hHHHHHHHHHHHC-CCCCCHH-HHH----H
Q 012101 170 GDFEKARKVFDENPERKLG--------SWNAIIAGLSQ-----DGRA---KEAIDMFIGLKKC-GFEPDDV-TMV----S 227 (471)
Q Consensus 170 g~~~~a~~~~~~~~~~~~~--------~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~ 227 (471)
|..+.|.+.++.... +.. ....++..... .+++ ++|+..++.+.+. ...|+.. .+. .
T Consensus 164 ~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 164 RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 999999999988775 211 12223332222 2234 7788899888854 2233321 111 1
Q ss_pred HHHHHcCcCCHHHHHHHHHHHHHhhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-----HhhHHHHHHH
Q 012101 228 VTSACGSLGDLELALQVHKYVFQVKSKQK-SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN-----VSSWTSMIVG 299 (471)
Q Consensus 228 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~ 299 (471)
.+.++...|+.++|...|+.+ .+.+.+ |+- ....+..+|...|++++|+..|+++.+ |. ......+..+
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~l--l~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRL--KAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHh--hccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 133445779999999999999 666532 322 223357789999999999999998865 22 2345566778
Q ss_pred HHhCCChhHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 012101 300 YAANGLANEALDCFHYMRESGI-----------RPNH---VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYG 365 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 365 (471)
+...|++++|..+++++.+... .|+. ..+..+...+...|+.++|++.++++... .+.+...+.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~ 397 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRI 397 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 8999999999999999987521 2332 23455667788999999999999999765 244567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA 429 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 429 (471)
.+...+...|++++|++.+++. ...|+ ...+......+...|++++|+.+++++.+..|.++.+
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8999999999999999999998 66776 5577777788999999999999999999999988743
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-15 Score=151.74 Aligned_cols=430 Identities=9% Similarity=-0.044 Sum_probs=278.8
Q ss_pred HHHHHHhhhchhhhhHHHHhhhccCCCCChHH-HHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHH--HHHHH
Q 012101 21 LLHRLCKTHTFRKHVTISAASSFLDTHEDPAK-IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNI--IRLYT 97 (471)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l--i~~~~ 97 (471)
..+.+...+..+...++..+.+.+...|+..+ ++ .++..+.. .|+.++|+..+++...+.+...+..+ ...+.
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~---~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGW---AGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHH---cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 34444444444444555555566666666311 33 66666666 56677777777776533233333333 44666
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHH
Q 012101 98 RLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARK 177 (471)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 177 (471)
..|++++|+++|+++.+... -+...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 67777777777777776542 23455555566677777777777777777654 3444444444444444555555777
Q ss_pred HhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----cCcCCHHH---
Q 012101 178 VFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVT------MVSVTSAC-----GSLGDLEL--- 240 (471)
Q Consensus 178 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------~~~li~~~-----~~~~~~~~--- 240 (471)
.++++.+. +...+..+.....+.|-...|+++.++-.+. +.+...- ....++.- ....++..
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 77766533 3335666667777777777777665543211 1111110 11111111 01122323
Q ss_pred HHHHHHHHHHhh--cCCCCChhH----HHHHHHHHHhcCChHHHHHHHHhcCCC----CHhhHHHHHHHHHhCCChhHHH
Q 012101 241 ALQVHKYVFQVK--SKQKSDTLM----LNSLIDMYGKCGRMDLAYKVFWEIDQP----NVSSWTSMIVGYAANGLANEAL 310 (471)
Q Consensus 241 a~~~~~~~~~~~--~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~ 310 (471)
|..-++.+ .. ...++.... .--.+-++...|++.++.+.|+.+..+ ...+-..+..+|...+++++|.
T Consensus 270 ala~~~~l--~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 270 ALADYQNL--LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHH--HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 33333443 22 122222122 223455778889999999999999852 2345567889999999999999
Q ss_pred HHHHHHHHcC-----CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCC----------CCCh---hHHHHHHHHHH
Q 012101 311 DCFHYMRESG-----IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQI----------EPRF---AHYGCMVDLLG 372 (471)
Q Consensus 311 ~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~p~~---~~~~~li~~~~ 372 (471)
.+++.+.... ..++......|..++...+++++|..+++.+.+.... .|+. ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999987643 1233444578889999999999999999999763210 1221 23445677888
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 012101 373 RAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
..|++.+|++.++++ ...| |......+...+...|.+.+|++.++......|.+..+....+.++...|+|++|.++.
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999 4455 78889999999999999999999999999999998889999999999999999999999
Q ss_pred HHhhcCCCcc
Q 012101 451 AVMKHRNLAK 460 (471)
Q Consensus 451 ~~m~~~~~~~ 460 (471)
+...+..+..
T Consensus 508 ~~l~~~~Pe~ 517 (822)
T PRK14574 508 DDVISRSPED 517 (822)
T ss_pred HHHHhhCCCc
Confidence 8887665543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-15 Score=149.99 Aligned_cols=377 Identities=14% Similarity=0.038 Sum_probs=269.3
Q ss_pred hHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHH
Q 012101 35 VTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFM 112 (471)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 112 (471)
.++......+...|++. .|..+...|.+ .|++++|+..++..-. +.+..+|..+-.+|...|++++|+.-|...
T Consensus 145 ~Ai~~y~~al~~~p~~~-~~~n~a~~~~~---l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 145 KAIKLYSKAIECKPDPV-YYSNRAACHNA---LGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHhcCCchH-HHHHHHHHHHH---hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555556778889988 99999999999 8889999998887542 346678999999999999999999888776
Q ss_pred HHCCCCCCcchHHHHHHHHhccCCchHHHHHHHH-------------HHH------------hCCCCCcchHHHHHHHH-
Q 012101 113 SRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSL-------------AVR------------LGLESNEFCESGFISLY- 166 (471)
Q Consensus 113 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-------------~~~------------~~~~~~~~~~~~ll~~~- 166 (471)
...+. .+......++...........+...++. ... .....+...-..++..+
T Consensus 221 ~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 221 CIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 54421 1111111111111110000111111100 000 00000000001111111
Q ss_pred -----HhcCChhhHHHHhccCCCC------CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcC
Q 012101 167 -----SKAGDFEKARKVFDENPER------KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD-DVTMVSVTSACGS 234 (471)
Q Consensus 167 -----~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 234 (471)
...+++++|.+.|+...+. ....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+..
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHH
Confidence 1236789999999876532 2346888888999999999999999999876 454 5678888888999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHH
Q 012101 235 LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALD 311 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 311 (471)
.|++++|...++.+ +... +.+..++..+...+...|++++|...|++..+ .+...+..+...+.+.|++++|+.
T Consensus 378 ~g~~~eA~~~~~~a--l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 378 LGDPDKAEEDFDKA--LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred CCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999998 5543 34577889999999999999999999998865 345677788889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh--------hHHHHHHHHHHhcCCHHHHHHH
Q 012101 312 CFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF--------AHYGCMVDLLGRAGLLEEARAM 383 (471)
Q Consensus 312 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~ 383 (471)
.+++..+.. +.+...+..+...+...|++++|.+.|+...+. .|+. ..++.....+...|++++|.++
T Consensus 455 ~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 455 TFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999988752 334678888889999999999999999998754 3321 1122222334457999999999
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 384 VEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 384 ~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
+++. .+.|+. ..+..+...+.+.|++++|...|++..++.+.
T Consensus 531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9997 666644 57889999999999999999999999988764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-14 Score=141.38 Aligned_cols=384 Identities=11% Similarity=0.039 Sum_probs=280.7
Q ss_pred cCchHHHHHHhcccCC-CCchh-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cchHHHH--HHHHhccCCchHHH
Q 012101 67 LNQIYAHIIRTHMLHS-YSAAF-HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPD-CYTLPIV--LKASCQLFALEIGR 141 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l--l~~~~~~~~~~~a~ 141 (471)
.|++..|+..|++... .|+.. .-..++..+...|+.++|+..+++.. .|+ ...+..+ ...+...|++++|.
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5889999999998754 34431 23388888999999999999999987 333 3334444 45788889999999
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHc--CCChhHHHHHHHHHHHCCCC
Q 012101 142 QLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQ--DGRAKEAIDMFIGLKKCGFE 219 (471)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~ 219 (471)
++++++.+.. +.+...+..++..|...++.++|++.++++...+......+..++.. .++..+|++.++++.+.. +
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P 200 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-P 200 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-C
Confidence 9999999875 44567777888999999999999999999887665533334444444 566666999999999884 4
Q ss_pred CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHH------HHHHHHH-----HhcCCh---HHHHHHHHhc
Q 012101 220 PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLML------NSLIDMY-----GKCGRM---DLAYKVFWEI 285 (471)
Q Consensus 220 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~g~~---~~A~~~~~~~ 285 (471)
-+...+..+..+..+.|-...|.++..+- . .-+.+....+ ...++.- ....++ +.|..-++.+
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~--p-~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKEN--P-NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhC--c-cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 45677788888899999988888876543 1 1111111111 0111000 012233 3334333433
Q ss_pred CC-----CCH-h----hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhc
Q 012101 286 DQ-----PNV-S----SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVY 355 (471)
Q Consensus 286 ~~-----~~~-~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 355 (471)
.. |.. . ..--.+-++...|++.++++.|+.|...|.+....+-..+..+|...+++++|..+++.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 32 321 1 2223566788899999999999999998866555678889999999999999999999986542
Q ss_pred C----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-------------C--CHH-HHHHHHHHHHhcCCHHHHHH
Q 012101 356 Q----IEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMK-------------A--NVV-IWGCLMGACEKFGNVKMGEW 414 (471)
Q Consensus 356 ~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-------------p--~~~-~~~~l~~~~~~~~~~~~a~~ 414 (471)
+ ..++......|..+|...+++++|..+++.+ ... | |-. .+..++..+.-.|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2 1233444578899999999999999999998 211 2 222 34456677889999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 415 VAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.++++....|.+......+..++...|...+|++.++......+.
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 999999999999999999999999999999999999887766443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-13 Score=121.58 Aligned_cols=304 Identities=17% Similarity=0.189 Sum_probs=164.5
Q ss_pred HHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHH------------------------HHHHhccc
Q 012101 25 LCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYA------------------------HIIRTHML 80 (471)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~------------------------a~~~~~~~ 80 (471)
+.+++....+--+...++-.+..-++. +.-.|++.-+-..+.+-.-. |.-+|+..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~ 203 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL 203 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc
Confidence 455555666556666665556555555 55555544221111111111 22333333
Q ss_pred CCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHH
Q 012101 81 HSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCES 160 (471)
Q Consensus 81 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (471)
| .+..+|..+|.++++--..++|.+++++-.....+.+..+||.+|.+-+-.. ..+++.+|....+.||..|+|
T Consensus 204 P--KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 204 P--KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred C--CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHH
Confidence 3 2335677777777777777777777777766666777777777776543322 266777777777777777777
Q ss_pred HHHHHHHhcCChhhHHHHh----ccCC----CCCcchHHHHHHHHHcCCChhH-HHHHHHHHHH----CCCCC----CHH
Q 012101 161 GFISLYSKAGDFEKARKVF----DENP----ERKLGSWNAIIAGLSQDGRAKE-AIDMFIGLKK----CGFEP----DDV 223 (471)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~----~~~~----~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~p----~~~ 223 (471)
+++.+.++.|+++.|.+.+ .+|+ +|...+|..+|..+.+.+++.+ |..++.+... +.++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 7777777777776654433 3333 3444466666666666655533 2223333222 11221 334
Q ss_pred HHHHHHHHHcCcCCHHHHHHHHHHHHHhhcC----CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCHhh
Q 012101 224 TMVSVTSACGSLGDLELALQVHKYVFQVKSK----QKSD---TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSS 292 (471)
Q Consensus 224 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 292 (471)
-|...|..|.+..+.+.|.++..-. .... +.|+ ..-|..+..+.|+....+.-...|+.|.. |+..+
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll--~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLL--KTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH--HcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 4555666666666666666655544 1111 1111 12334455555555556666666666554 55555
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
...++++..-.|.++-.-++|..+...|..-+......++..+++
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 555556555566666666666666665544444333333333333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-13 Score=132.16 Aligned_cols=419 Identities=8% Similarity=0.012 Sum_probs=258.7
Q ss_pred hhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC--CCCchhhHHHHHHHHHhCCCchHHHHHHHH
Q 012101 34 HVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH--SYSAAFHWNNIIRLYTRLEAPKKALDIYIF 111 (471)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 111 (471)
-.++.++.+++++.|......-.|--.-....+...+..+...+...- ...|++..+.|..-|...|+++.++.+.+.
T Consensus 216 ~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 346667778888888544222222222233333455666666665442 235677899999999999999999999999
Q ss_pred HHHCCCC--CCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCC---C
Q 012101 112 MSRAGVL--PDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPER---K 186 (471)
Q Consensus 112 m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~ 186 (471)
+...... .-..+|-.+.+++-..|++++|...|.+..+..-..-+..+-.|..+|.+.|+++.+...|+.+.+. +
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN 375 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch
Confidence 9775411 1245688889999999999999999988876542222445567889999999999999999987543 3
Q ss_pred cchHHHHHHHHHcCC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHH--hhcCCCCChh
Q 012101 187 LGSWNAIIAGLSQDG----RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQ--VKSKQKSDTL 260 (471)
Q Consensus 187 ~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ 260 (471)
..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+-...- ..+...|..+.. ...+-.+.+.
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHH
Confidence 446666777777664 4567777777666552 4566777777666654443 333555554310 2344446778
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC-------CCH------hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-H
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ-------PNV------SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH-V 326 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~ 326 (471)
..|.+...+...|++++|...|+.... +|. .+--.+....-..++.+.|.+.|....+. .|.- .
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId 531 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID 531 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH
Confidence 889999999999999999988876542 222 11222333444556777777777777665 3442 2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM----PMKANVVIWGCLMGA 402 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~ 402 (471)
.|..+.......+...+|...++....... .++..++.+...+.+...+..|.+-|+.. ...+|..+.-+|.+.
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDS--SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhccc--CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 333333222334556666666666654322 23333444444555555555555533333 223455555555554
Q ss_pred HHh------------cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 403 CEK------------FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 403 ~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
|.+ .+..++|+++|.++.+..|.|...-+.++.+++..|++++|..+|..+++...
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 431 12345566666666666666555555566666666666666666666665544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-13 Score=138.28 Aligned_cols=384 Identities=11% Similarity=-0.001 Sum_probs=277.3
Q ss_pred HHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHH--hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 012101 55 ATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYT--RLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASC 132 (471)
Q Consensus 55 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 132 (471)
-.++..+.+ .+++..+.++.+--+ .... ..++... ..+...++...+..|.+.. +-+....-.+--...
T Consensus 317 ~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~ 387 (987)
T PRK09782 317 GATLPVLLK---EGQYDAAQKLLATLP---ANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLM 387 (987)
T ss_pred HHHHHHHHh---ccHHHHHHHHhcCCC---cchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 334555666 566666665543222 2121 2333222 2356667777777776542 225555555555677
Q ss_pred ccCCchHHHHHHHHHHHh-C-CCCCcchHHHHHHHHHhcCC---hhhHHHHhc-------------------------cC
Q 012101 133 QLFALEIGRQLHSLAVRL-G-LESNEFCESGFISLYSKAGD---FEKARKVFD-------------------------EN 182 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~-------------------------~~ 182 (471)
+.|+.++|.++++..... + -..+....+.|+..|.+.+. ..++..+-. ..
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 888999999999887762 1 12233445567778877766 333333311 11
Q ss_pred C---CC--CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC
Q 012101 183 P---ER--KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS 257 (471)
Q Consensus 183 ~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (471)
. .. +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...++.+ ... +|
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka--~~~--~p 540 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKI--SLH--DM 540 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHH--hcc--CC
Confidence 1 11 34467777777776 8999999988887766 577655555556667899999999999987 443 33
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHH---HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWT---SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA 334 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 334 (471)
+...+..+..++.+.|++++|...|++..+.++...+ .+.......|++++|...+++..+. .|+...+..+..+
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~ 618 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATI 618 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 3445667788899999999999999988763332222 3333444569999999999999876 5678888899999
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~ 411 (471)
+.+.|++++|...+++.... .|+ ...+..+..++...|++++|.+.+++. ...| +...+..+..++...|++++
T Consensus 619 l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999864 454 557778888999999999999999998 6666 56689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 412 GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
|+..+++..+..|.+..+.....+...+..+++.|.+-+++...-++.
T Consensus 696 A~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 696 TQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999988888889999999999999999988887665544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-13 Score=119.29 Aligned_cols=353 Identities=11% Similarity=0.076 Sum_probs=255.3
Q ss_pred CCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC---CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcch
Q 012101 47 HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS---YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYT 123 (471)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 123 (471)
.|.+..++.++|.+.++ ....+.|+.++++.+. +-+..+||.+|.+-.-.. ..+++.+|....+.||..|
T Consensus 203 ~PKT~et~s~mI~Gl~K---~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCK---FSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred cCCCchhHHHHHHHHHH---HHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHh
Confidence 34444489999999999 6778999999998764 346678999988755432 3789999999999999999
Q ss_pred HHHHHHHHhccCCch----HHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh-HHHHhccC----CC--------CC
Q 012101 124 LPIVLKASCQLFALE----IGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK-ARKVFDEN----PE--------RK 186 (471)
Q Consensus 124 ~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~----~~--------~~ 186 (471)
+|.++.+.++.|+++ .|.+++.+|.+.|+.|...+|.-+|..+.+.++..+ |..++.++ .. .|
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 999999999999875 567889999999999999999999999999888765 33333332 11 13
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCCh
Q 012101 187 LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCG----FEPD---DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDT 259 (471)
Q Consensus 187 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 259 (471)
..-|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.|+....+.-...|+.+ +..-+-|+.
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l--VP~~y~p~~ 433 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL--VPSAYFPHS 433 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccceecCCc
Confidence 3357788888888899888888776554321 3333 234567777888899999999999999 888888999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHhc
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV---TFVGVLSACV 336 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~ 336 (471)
.+..-++++....|.++-..+++..+..-+. .-+-+--++++..|......|+.. -+.....-|+
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh------------t~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGH------------TFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhh------------hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999887764222 112233345555555555555433 2333332221
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-------PMKANVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~l~~~~~~~~~~ 409 (471)
..-.+..+..-.+++.. .......+.+...+.+.|+.++|.++|.-. +..|......-++.+-.+.++.
T Consensus 502 -ad~~e~~e~~~~R~r~~---~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 502 -ADIKEAYESQPIRQRAQ---DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred -HHHHHHHHhhHHHHHhc---cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 11222223333444332 344456777888899999999999998876 3345555555777778888899
Q ss_pred HHHHHHHHHHHhcCC
Q 012101 410 KMGEWVAKHLQELEP 424 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~ 424 (471)
..|...++-+...+.
T Consensus 578 sqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 578 SQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHHHcCc
Confidence 999999988876664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-13 Score=128.86 Aligned_cols=327 Identities=14% Similarity=0.118 Sum_probs=205.4
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhc---cCCCCCcchHHHHHHHHHcCCChhHHHHHHH
Q 012101 135 FALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFD---ENPERKLGSWNAIIAGLSQDGRAKEAIDMFI 211 (471)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 211 (471)
|+++.|.+++.++++.. +.....|.+|...|-..|+.+++...+- .+...|...|-.+.....+.|+++.|.-+|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 56666666666665543 3444555556666666666666555442 2333444555566666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhcCC
Q 012101 212 GLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLN----SLIDMYGKCGRMDLAYKVFWEIDQ 287 (471)
Q Consensus 212 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 287 (471)
+..+.. +++...+---+..|-+.|+...|..-|.++ .....+.|..-+. ..+..+...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l--~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQL--LQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHH--HhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 655542 333333334444555566666666666655 3332222222111 223344444555555555554432
Q ss_pred -----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc---------------------------CCCCCHHHHHHHHHHh
Q 012101 288 -----PNVSSWTSMIVGYAANGLANEALDCFHYMRES---------------------------GIRPNHVTFVGVLSAC 335 (471)
Q Consensus 288 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------~~~p~~~~~~~ll~~~ 335 (471)
-+...++.++..|.+...++.|......+... ++.++...+. +.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hhhhh
Confidence 23345556666666666666666666655541 2233333322 22234
Q ss_pred ccCCcHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHhcCCHH
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQ--IEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-P--MKANVVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~--~~p~~~~~~~l~~~~~~~~~~~ 410 (471)
.+.+..+...-+.....+. . ..-+...|.-+.++|...|++.+|+.+|..+ . ..-+...|-.+..+|...|.++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4445555555555555443 4 3344567888999999999999999999999 2 2235679999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCccee
Q 012101 411 MGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLA 467 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 467 (471)
.|.+.++++....|.+...-..|...|.+.|+.++|.++++.|...+....++++|-
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 999999999999999999999999999999999999999999987666666677664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=140.14 Aligned_cols=256 Identities=16% Similarity=0.148 Sum_probs=106.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVT-MVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK 271 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (471)
+...+.+.|++++|++++++......+|+... +..+...+...++++.|.+.++.+ ...+.. ++..+..++.. ..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l--~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKL--LASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccc-ccccccccccc-cc
Confidence 34556666777777777754433321233333 333444555667777777777777 443322 44456666665 57
Q ss_pred cCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhccCCcHHHHHHHH
Q 012101 272 CGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESG-IRPNHVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
.+++++|.+++...-+ ++...+..++..+.+.++++++.++++++.... ..++...|..+...+.+.|+.++|.+.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777765533 555666777778888888888888888876542 3456667777778888899999999999
Q ss_pred HHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 349 EMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 349 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
++..+. .|+ ......++..+...|+.+++.++++.. ....|...+..+..++...|+.++|...+++..+..|.
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 988765 454 667778888888889988888888777 22345567788899999999999999999999999999
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 426 SDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
++.....++.++...|+.++|.++.++...
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999998876543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-12 Score=126.89 Aligned_cols=399 Identities=13% Similarity=0.081 Sum_probs=234.1
Q ss_pred CCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCC-----CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 012101 47 HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSY-----SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDC 121 (471)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 121 (471)
..+|. +.+.|-+-|.- -|++..++.+.+.+-.. --..+|-.+-++|-..|++++|...|.+..+.. ||.
T Consensus 267 ~~nP~-~l~~LAn~fyf---K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~ 340 (1018)
T KOG2002|consen 267 NENPV-ALNHLANHFYF---KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDN 340 (1018)
T ss_pred CCCcH-HHHHHHHHHhh---cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCC
Confidence 35577 88888888877 57788888877655321 123468889999999999999999998887653 454
Q ss_pred ch--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcC----ChhhHHHHhccCCCC---CcchHHH
Q 012101 122 YT--LPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAG----DFEKARKVFDENPER---KLGSWNA 192 (471)
Q Consensus 122 ~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~ 192 (471)
++ +.-+...+.+.|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..++ |...|-.
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~ 419 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLE 419 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 44 4456778999999999999999998853 556677777888888775 556777777665544 3446666
Q ss_pred HHHHHHcCCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc---CCCCChh-----
Q 012101 193 IIAGLSQDGRAKEAIDMFIGL----KKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKS---KQKSDTL----- 260 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~----- 260 (471)
+...+.+..-+ .++..|... ...+-.+.....+.+.......|+++.|...|... ... ...++..
T Consensus 420 laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A--~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 420 LAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA--LGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH--hhhhhhhcCccccccchh
Confidence 66666554433 336666543 34555577778888888888889998888888877 332 1222221
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhh-HHHHHHHHHhCCChhHHHHHHHHHHHc-CCC-------------
Q 012101 261 -MLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSS-WTSMIVGYAANGLANEALDCFHYMRES-GIR------------- 322 (471)
Q Consensus 261 -~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~------------- 322 (471)
+--.+...+-..++++.|.+.|..+.+ |+-+. |--+.......++..+|...+++.... .-.
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 122234444455666777777766654 32221 111111111224445555555544332 112
Q ss_pred ---------------------CCHHHHHHHHHHhcc------------CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 323 ---------------------PNHVTFVGVLSACVH------------GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 323 ---------------------p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
+|......|-..|.. .+..++|+++|.++... -+.|...-+-+.-
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGI 654 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhh
Confidence 233333333332211 12344555555555432 1233344444555
Q ss_pred HHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHcCCChHH
Q 012101 370 LLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELE-P-WSDGAYVVLSNIYASRGLWEE 445 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~ 445 (471)
.++..|++.+|..+|... ...-+..+|-.+..+|...|++..|+++|+...+.. + .++.+...|+.++.+.|.+.+
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 555566666666666655 112233455556666666666666666666555433 1 223345556666666666666
Q ss_pred HHHHHHHhhcCC
Q 012101 446 VERIRAVMKHRN 457 (471)
Q Consensus 446 A~~~~~~m~~~~ 457 (471)
|.+.+.......
T Consensus 735 ak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 735 AKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHhC
Confidence 666555554433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-12 Score=115.06 Aligned_cols=395 Identities=12% Similarity=0.080 Sum_probs=274.4
Q ss_pred cCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 012101 67 LNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLH 144 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 144 (471)
.+++..|+.+|++.-. ..++..|-.-+..=.++..+..|..++++....=+..|.. |---+..--..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence 4556677777776532 3566667777777777788888888888776543222222 222333344567788888888
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhcc--CCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 012101 145 SLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDE--NPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD 222 (471)
Q Consensus 145 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 222 (471)
+.-.+ ..|+...|++.|+.=.+-..++.|..++++ +..|++.+|--....--+.|+...|..+|+...+. -.|.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 77664 467888888888888888888888888877 34677777777777777778888888888776653 2222
Q ss_pred H----HHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHH--------HhcCC--
Q 012101 223 V----TMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD-TLMLNSLIDMYGKCGRMDLAYKVF--------WEIDQ-- 287 (471)
Q Consensus 223 ~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~-- 287 (471)
. .|.+....=.+...++.|.-+|+.. +..-.... ...|..+...=-+-|+-...+... +++.+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyA--ld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYA--LDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 2 2333333334556677777777766 44322211 334544444444555544443332 22222
Q ss_pred -CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHH---hccCCcHHHHHHHHHHhHHhcC
Q 012101 288 -PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV-------TFVGVLSA---CVHGGKVQEGKHFFEMMKNVYQ 356 (471)
Q Consensus 288 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~ 356 (471)
-|-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=-+ =....+++.+.++++...+ -
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--l 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--L 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--h
Confidence 34467777777777889999999999999876 555321 12111111 1346789999999998875 3
Q ss_pred CCCChhHHHHHHHHH----HhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 012101 357 IEPRFAHYGCMVDLL----GRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 357 ~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
++....||.-+--+| .++.++..|.+++... |..|-..+|...|..-.+.++++....++++..+.+|.+..+|.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 445556666555544 4788999999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceeeccC
Q 012101 432 VLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATRLD 471 (471)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~ 471 (471)
..+..-...|+++.|..+|+-..+++....|..-|-..||
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 9999999999999999999999998887777777766654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-12 Score=115.71 Aligned_cols=346 Identities=14% Similarity=0.131 Sum_probs=234.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--------hHH
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEF--------CES 160 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~ 160 (471)
.|.+--.+.+.|.++.|+.-|+...+. .|+..+-..|+-++..-|+.++..+.|.+|+.....+|.. .-.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 444444677889999999999988775 4776655455555556678899999999888643333222 112
Q ss_pred HHHHHHHhcC-----------ChhhHH----HHhccCCCCCcc---hHH------------------HHHHHHHcCCChh
Q 012101 161 GFISLYSKAG-----------DFEKAR----KVFDENPERKLG---SWN------------------AIIAGLSQDGRAK 204 (471)
Q Consensus 161 ~ll~~~~~~g-----------~~~~a~----~~~~~~~~~~~~---~~~------------------~li~~~~~~~~~~ 204 (471)
.|+.--.+.. +.+++. ++..-...++.. -|. .-...+.+.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2332222221 111211 111112222211 010 1123467889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH------------------------------------HHHcCcCCHHHHHHHHHHH
Q 012101 205 EAIDMFIGLKKCGFEPDDVTMVSVT------------------------------------SACGSLGDLELALQVHKYV 248 (471)
Q Consensus 205 ~a~~~~~~m~~~g~~p~~~~~~~li------------------------------------~~~~~~~~~~~a~~~~~~~ 248 (471)
.|+++++-+.+..-+.-...-+.+. +.....|++++|.+.|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 9999888776543222111111110 1112346778888888777
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 249 FQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
+...-.-....|| +.-.+-..|++++|...|-++.. .+....-.+...|-...+..+|++++.+.... ++.|.
T Consensus 517 --l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 517 --LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred --HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 4433222222333 33346677888888888877653 66677777788888888999999988776654 55677
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGAC- 403 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~- 403 (471)
.....|...|-+.|+-.+|.+.+-+--+ -++-+..+...|...|....-++++...|++. -++|+..-|..++..|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 8888999999999999999998776543 35667888888889999999999999999999 7899999999988655
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGL 442 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 442 (471)
.+.|++.+|..+++...+..|.+......|+..+...|.
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 578999999999999999999998888889988877774
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=123.26 Aligned_cols=284 Identities=10% Similarity=-0.014 Sum_probs=173.7
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcch-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHH--HHHHHHHhcCChhhH
Q 012101 99 LEAPKKALDIYIFMSRAGVLPDCYT-LPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCES--GFISLYSKAGDFEKA 175 (471)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a 175 (471)
.|++++|.+.+....+.+ +++.. |.....+..+.|+++.+.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 477777776666554432 12222 222233446667777777777776653 34433222 224556666666666
Q ss_pred HHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhh
Q 012101 176 RKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVK 252 (471)
Q Consensus 176 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 252 (471)
.+.++++.+. +......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------
Confidence 6666654432 3335556666666666666666666666655432211 111000
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 012101 253 SKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFV 329 (471)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 329 (471)
...|..++.......+.+...++++.+.+ .++.....+...+...|+.++|.+.+++..+. .|+...
T Consensus 229 ------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l-- 298 (398)
T PRK10747 229 ------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL-- 298 (398)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--
Confidence 01222233333333445555566665543 46667777788888888888888888887764 444422
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGN 408 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~ 408 (471)
.++.+....++.+++.+..+...+.+ +-|......+...+.+.|++++|.+.|+.. ...|+..++..+..++.+.|+
T Consensus 299 ~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 299 VLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 22334445588888888888887653 334455667888888888888888888888 778888888888888888888
Q ss_pred HHHHHHHHHHHHhc
Q 012101 409 VKMGEWVAKHLQEL 422 (471)
Q Consensus 409 ~~~a~~~~~~~~~~ 422 (471)
.++|.+++++...+
T Consensus 377 ~~~A~~~~~~~l~~ 390 (398)
T PRK10747 377 PEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888887654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.8e-12 Score=117.64 Aligned_cols=275 Identities=10% Similarity=0.059 Sum_probs=203.2
Q ss_pred cCChhhHHHHhccCCCCC--cc-hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHcCcCCHHHHHH
Q 012101 169 AGDFEKARKVFDENPERK--LG-SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMV--SVTSACGSLGDLELALQ 243 (471)
Q Consensus 169 ~g~~~~a~~~~~~~~~~~--~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~ 243 (471)
.|+++.|++.+....+.. .. .|........+.|+++.|...+.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888887777655431 22 3333344457788888888888888765 55554332 33566778888888888
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CH--------hhHHHHHHHHHhCCChhHHHHH
Q 012101 244 VHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP---NV--------SSWTSMIVGYAANGLANEALDC 312 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~~~~~~a~~~ 312 (471)
.++.+ .+.. +-++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++
T Consensus 175 ~l~~~--~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 175 GVDKL--LEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHH--HhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88887 4444 445677888888888888998888888887751 11 1333444444455566777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 012101 313 FHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA 391 (471)
Q Consensus 313 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 391 (471)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+.. ...|
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 7776543 3456778888899999999999999999998753 455532 2334445669999999999998 6666
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 392 N-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 392 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
+ ...+..+...|.+.+++++|.+.|+++.+..|. ...+..+..++.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 456888999999999999999999999999885 45678999999999999999999997754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-12 Score=117.65 Aligned_cols=143 Identities=8% Similarity=-0.014 Sum_probs=85.2
Q ss_pred HHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH--H-HHHHHHhccCCcHHHHHHHHHH
Q 012101 277 LAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT--F-VGVLSACVHGGKVQEGKHFFEM 350 (471)
Q Consensus 277 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~ll~~~~~~~~~~~a~~~~~~ 350 (471)
...+.++...+ .+...+..+...+...|++++|.+.+++..+. .||... + ..........++.+.+.+.++.
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 33344444432 35666666777777777777777777777765 333321 0 1111122334666677777766
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 351 MKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEG--M-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 351 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
..+..+-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 665432222223445666777777777777777773 2 5567777677777777777777777777776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=128.97 Aligned_cols=256 Identities=16% Similarity=0.123 Sum_probs=84.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhc
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLP-DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKA 169 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 169 (471)
.+...+.+.|++++|++++++......+| |...|..+...+...++++.|.+.++++.+.+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44666777777888887775544333123 33444444555666777777777777777654 2245556666665 577
Q ss_pred CChhhHHHHhccCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHcCcCCHHHHHHHHH
Q 012101 170 GDFEKARKVFDENPE--RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCG-FEPDDVTMVSVTSACGSLGDLELALQVHK 246 (471)
Q Consensus 170 g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 246 (471)
+++++|.++++..-+ ++...+..++..+.+.++++++.++++.+.... .+.+...|......+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777765432 344456666677777777777777777765432 23455566666677777777777777777
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 012101 247 YVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP 323 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 323 (471)
+. ++..+ .|..+.+.++..+...|+.+++..++....+ .|...|..+..++...|+.++|..+|++..+.. +.
T Consensus 171 ~a--l~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KA--LELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HH--HHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HH--HHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 77 44332 2455666677777777777776665555432 455566667777777777777777777766642 33
Q ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 324 NHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
|......+..++...|+.++|.++..++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55666666677777777777777666553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-11 Score=109.51 Aligned_cols=396 Identities=14% Similarity=0.071 Sum_probs=259.9
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCC---Cchh-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSY---SAAF-HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVL 128 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 128 (471)
+...|...|.. ..-..+|+..++-+... ||.- .-..+-..+.+..++.+|++.|.-....-...+..+-.-++
T Consensus 203 vl~nlaqqy~~---ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 203 VLFNLAQQYEA---NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHhhh---hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 55555566655 45567777777655421 2211 12235567888889999999998776653333344443444
Q ss_pred H----HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC----------------CCcc
Q 012101 129 K----ASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE----------------RKLG 188 (471)
Q Consensus 129 ~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------------~~~~ 188 (471)
. .+.+.|.++.|...|+...+. .|+..+--.|+-++..-|+-++..+.|.+|.. |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 3 468999999999999998875 57766655566677778999999999987641 1111
Q ss_pred hHH-----HHHHHHHcCC--ChhHHHHHHHHHHHCCCCCCHHH---H------------------HHHHHHHcCcCCHHH
Q 012101 189 SWN-----AIIAGLSQDG--RAKEAIDMFIGLKKCGFEPDDVT---M------------------VSVTSACGSLGDLEL 240 (471)
Q Consensus 189 ~~~-----~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~---~------------------~~li~~~~~~~~~~~ 240 (471)
..| -.+.-.-+.+ +.++++-.-.++..--+.||-.. | ..-...+.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 122 2222222222 12222222222222112222110 0 011234678999999
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHH------------------------------------HHHhcCChHHHHHHHHh
Q 012101 241 ALQVHKYVFQVKSKQKSDTLMLNSLID------------------------------------MYGKCGRMDLAYKVFWE 284 (471)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~~l~~------------------------------------~~~~~g~~~~A~~~~~~ 284 (471)
|.++++-. .+.....-...-+.|.- ....+|++++|.+.|++
T Consensus 438 aieilkv~--~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVF--EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHH--HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999877 44433221111111111 11135889999999998
Q ss_pred cCCCCHhhHHHHHH---HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh
Q 012101 285 IDQPNVSSWTSMIV---GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF 361 (471)
Q Consensus 285 ~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 361 (471)
....|...-.+|.. .+-..|+.++|++.|-++..- +..+......+...|--..+..+|++++..... -++.|+
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDP 592 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCH
Confidence 88877655444443 356679999999999887653 344677777888888888999999999988753 355567
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH-HHH
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN-IYA 438 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~-~~~ 438 (471)
...+.|.+.|-+.|+-..|.+..-+- ..-| +..+..=|...|....-+++++.+|++..-+.| +.+-|..++- ++.
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp-~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP-NQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHH
Confidence 88999999999999999998875554 4334 777877788888888889999999999988887 4456666554 566
Q ss_pred cCCChHHHHHHHHHhhcCCCc
Q 012101 439 SRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+.|++.+|.++++.+...-++
T Consensus 672 rsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred hcccHHHHHHHHHHHHHhCcc
Confidence 889999999999999876544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-11 Score=105.38 Aligned_cols=315 Identities=12% Similarity=0.057 Sum_probs=229.0
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcc-hHHHHHHHHHcCCChhHHHHH
Q 012101 131 SCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLG-SWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~ 209 (471)
.-+.|....|...|...+.. -+..|.+-+....-..+.+.+..+...++..+.. .--.+..++-...+.++++.-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777665532 1233444443333334455555444444432221 112234556666688889888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC
Q 012101 210 FIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQ--KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ 287 (471)
Q Consensus 210 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 287 (471)
.+.....|++-+...-+....+.....|+++|+.+|+++ .+..+ --|..+|+.++-.--.+.++.---...-.+.+
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei--~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK 327 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEI--RKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK 327 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH--HhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 888888888777666666666677889999999999999 55532 12456777666333222222221122223334
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGC 366 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 366 (471)
--+.|..++.+-|.-.++.++|..+|++..+. .|. ...|+.+-+-|...++...|.+-++.+.+. .+.|-..|-.
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYG 403 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYG 403 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhh
Confidence 44567777888889999999999999999876 444 456777778899999999999999999754 2456778999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWE 444 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 444 (471)
|.++|.-.+.+.-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|++....+..+...+..|++.|.+.++.+
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999 7777 67899999999999999999999999999988777789999999999999999
Q ss_pred HHHHHHHHhhc
Q 012101 445 EVERIRAVMKH 455 (471)
Q Consensus 445 ~A~~~~~~m~~ 455 (471)
+|...+++-.+
T Consensus 484 eAa~~yek~v~ 494 (559)
T KOG1155|consen 484 EAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHH
Confidence 99998887655
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-10 Score=105.98 Aligned_cols=362 Identities=10% Similarity=-0.008 Sum_probs=156.8
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHH----HHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCC--CcchHH
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFM----SRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLES--NEFCES 160 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 160 (471)
..|-+-...=-.+|+.+...++.++- ...|+..+..-|..=...|-..|..-.+..+....+..|+.. -..+|.
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 34444444444455555555444432 334444444444444444444444444444444444444321 123444
Q ss_pred HHHHHHHhcCChhhHHHHhccCCCC---CcchHHHHHH----------------------------------HHHcCCCh
Q 012101 161 GFISLYSKAGDFEKARKVFDENPER---KLGSWNAIIA----------------------------------GLSQDGRA 203 (471)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~----------------------------------~~~~~~~~ 203 (471)
.-...|.+.+.++-|..+|....+- +...|..... .+...|+.
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv 600 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDV 600 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCc
Confidence 4445555555555555555443211 1222333333 33333444
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 012101 204 KEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFW 283 (471)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 283 (471)
..|..++....+.. +-+...+...+..-....+++.|..+|.+. . ...++..+|.--+..---.++.++|.++++
T Consensus 601 ~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llaka--r--~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 601 PAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKA--R--SISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHH--h--ccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 44444444433332 113333444444444444444444444433 1 122333333333333333344444444444
Q ss_pred hcCC--CCH-hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC
Q 012101 284 EIDQ--PNV-SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR 360 (471)
Q Consensus 284 ~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 360 (471)
+..+ |+. ..|-.+.+.+-+.++.+.|.+.|..-.+. ++-....|..+...=-+.|.+-+|..+++...-+ -+-+
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~ 752 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKN 752 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCc
Confidence 3333 222 23333333444444444444444332221 1111223333333333444555555555555432 1234
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-------C-------------------------CCCCHHHHHHHHHHHHhcCC
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM-------P-------------------------MKANVVIWGCLMGACEKFGN 408 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-------------------------~~p~~~~~~~l~~~~~~~~~ 408 (471)
...|-..|++=.+.|+.+.|..++.+. | ..-|....-.+...+....+
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 445555555555666666555554443 0 01122223333344444445
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 409 VKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 409 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+++|.+-|.+..+.+|++..+|..+...+.+.|.-++-.+++++....
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 555555666655555555555555555555555555555555554443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-11 Score=116.69 Aligned_cols=294 Identities=12% Similarity=-0.005 Sum_probs=209.2
Q ss_pred hhHHHHHHHHH--hCCCchHHHHHHHHHHHCCCCCCcch-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH
Q 012101 87 FHWNNIIRLYT--RLEAPKKALDIYIFMSRAGVLPDCYT-LPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163 (471)
Q Consensus 87 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 163 (471)
..+..+.++.. ..|+++.|.+.+.+..+. .|+... +-....+..+.|+++.+.+.+.+..+....+.........
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 34555666654 479999999999888765 355433 3444567788899999999999987654222223444457
Q ss_pred HHHHhcCChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---cCcCC
Q 012101 164 SLYSKAGDFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSAC---GSLGD 237 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~~~ 237 (471)
..+...|+++.|.+.++.+.+. +...+..+...+.+.|++++|.+.+..+.+.++.++......-..++ ...+.
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999887643 44578899999999999999999999999987543332212111221 22222
Q ss_pred HHHHHHHHHHHHHhhcC---CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhh---HHHHHHHHHhCCChhHH
Q 012101 238 LELALQVHKYVFQVKSK---QKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSS---WTSMIVGYAANGLANEA 309 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a 309 (471)
.+.+.+.+..+ .... .+.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+
T Consensus 241 ~~~~~~~L~~~--~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 241 ADEGIDGLLNW--WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HhcCHHHHHHH--HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 22223344444 2222 224788899999999999999999999998876 54432 12222233445788889
Q ss_pred HHHHHHHHHcCCCCCH---HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012101 310 LDCFHYMRESGIRPNH---VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEG 386 (471)
Q Consensus 310 ~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 386 (471)
.+.+++..+. .|+. ....++...|.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++
T Consensus 319 ~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 319 EKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999888765 4444 44557788899999999999999953221 4579999899999999999999999999987
Q ss_pred C
Q 012101 387 M 387 (471)
Q Consensus 387 m 387 (471)
.
T Consensus 396 ~ 396 (409)
T TIGR00540 396 S 396 (409)
T ss_pred H
Confidence 4
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-11 Score=109.04 Aligned_cols=351 Identities=15% Similarity=0.072 Sum_probs=235.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC-cchHHHHHHHHHh
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPD-CYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESN-EFCESGFISLYSK 168 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 168 (471)
..-.-|.++|++++|++.|.+..+. .|| +..|.....+|...|+|+++.+--...++. .|+ +..+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445677888899999999988874 577 666777777788888888877766666553 233 2233444455555
Q ss_pred cCChhhHHH----------------------Hhcc---------CC---CCCcchHHHHHHHHHc---------------
Q 012101 169 AGDFEKARK----------------------VFDE---------NP---ERKLGSWNAIIAGLSQ--------------- 199 (471)
Q Consensus 169 ~g~~~~a~~----------------------~~~~---------~~---~~~~~~~~~li~~~~~--------------- 199 (471)
.|++++|+. ++.. +. .|...+ .+.|..|..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccccccccccCCCc
Confidence 566555432 1111 11 111111 111111110
Q ss_pred --------------CC---ChhHHHHHHHHHHHC-CCCCCH-----------HHHHHHHHHHcCcCCHHHHHHHHHHHHH
Q 012101 200 --------------DG---RAKEAIDMFIGLKKC-GFEPDD-----------VTMVSVTSACGSLGDLELALQVHKYVFQ 250 (471)
Q Consensus 200 --------------~~---~~~~a~~~~~~m~~~-g~~p~~-----------~~~~~li~~~~~~~~~~~a~~~~~~~~~ 250 (471)
.+ .+.+|.+.+.+-... ...++. .+.......+.-.|+.-.+..-|+..
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~-- 352 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA-- 352 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH--
Confidence 01 122222222211100 011111 11111112233457788888888887
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHH
Q 012101 251 VKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP-NHV 326 (471)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~ 326 (471)
++....++. .|--+..+|....+.++-.+.|++..+ .|+.+|..-.+.+.-.+++++|..=|++.+.. .| +..
T Consensus 353 I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~ 429 (606)
T KOG0547|consen 353 IKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAY 429 (606)
T ss_pred HhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhH
Confidence 655544333 377777889999999999999998765 56778888888888899999999999998875 44 456
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------H--HHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-------V--VIW 396 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~--~~~ 396 (471)
.|..+-.+..+.+.++++...|++..+++ +--+..|+.....+...+++++|.+.|+.. .+.|+ . .+-
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 67777777778899999999999998754 555678999999999999999999999987 33333 2 222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 397 GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
-.++..-. .+++..|..++++..+++|.....|..|+..-...|+.++|+++|++-.
T Consensus 508 Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 508 KALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22322222 3899999999999999999999999999999999999999999999753
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-10 Score=112.06 Aligned_cols=347 Identities=15% Similarity=0.048 Sum_probs=243.9
Q ss_pred CchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHH
Q 012101 68 NQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHS 145 (471)
Q Consensus 68 ~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (471)
|+.+.|..++.++-. +.+..+|..|-..|-..|+.+++...+-..-... +-|...|..+.....+.|+++.|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 889999999988743 4567889999999999999999988776665443 3466888888888999999999999999
Q ss_pred HHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCc----c----hHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 012101 146 LAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKL----G----SWNAIIAGLSQDGRAKEAIDMFIGLKKCG 217 (471)
Q Consensus 146 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g 217 (471)
+.++.. +++...+---...|-+.|+...|.+-|.++-+.+. . .-...+..+...++.+.|.+.++.....+
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 998875 55555555567888999999999888887654433 1 23344666777777788888888776632
Q ss_pred -CCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHH-------------------------hhcCCCCChhH-HHHHHHHHH
Q 012101 218 -FEPDDVTMVSVTSACGSLGDLELALQVHKYVFQ-------------------------VKSKQKSDTLM-LNSLIDMYG 270 (471)
Q Consensus 218 -~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------------------------~~~~~~~~~~~-~~~l~~~~~ 270 (471)
-..+...++.++..+.+...++.+......... ...+..++..+ ...+.-...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 234455677788888888888888877766521 01112233333 111222222
Q ss_pred hcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHH
Q 012101 271 KCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
+.++..+++.-|-.... .++..|.-+..++.+.|++.+|+.+|..+...-.--+...|..+..+|...|..++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 33444444433322222 34567778888999999999999999999877555567788888899999999999999
Q ss_pred HHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012101 347 FFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-----------PMKANVVIWGCLMGACEKFGNVKMGEW 414 (471)
Q Consensus 347 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-----------~~~p~~~~~~~l~~~~~~~~~~~~a~~ 414 (471)
.|+.+... .|+ ...--.|...+.+.|++++|.+.+..+ +..|+..........+.+.|+.++-..
T Consensus 471 ~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 471 FYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99998754 343 334446777888999999999999986 233555555556667778887766544
Q ss_pred HHHHH
Q 012101 415 VAKHL 419 (471)
Q Consensus 415 ~~~~~ 419 (471)
....|
T Consensus 548 t~~~L 552 (895)
T KOG2076|consen 548 TASTL 552 (895)
T ss_pred HHHHH
Confidence 44333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-10 Score=100.03 Aligned_cols=395 Identities=12% Similarity=0.082 Sum_probs=246.7
Q ss_pred CCChHHHHHHHHHHHhcccccCchHHHHHHhccc-CCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHH
Q 012101 47 HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHML-HSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLP 125 (471)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 125 (471)
-|.+.+.|-.-+.+=-. .|++..|+++|++. ...|+..+|++.|..=.+.+.++.|..++++..- +.|+..+|.
T Consensus 137 lPRVdqlWyKY~ymEE~---LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wi 211 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEM---LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWI 211 (677)
T ss_pred cchHHHHHHHHHHHHHH---hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHH
Confidence 34444455555544444 56677788887764 3467778888888888888888888888887765 457777777
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHh-CC-CCCcchHHHHHHHHHhcCChhhHHHHhc----cCCCCCc-chHHHHHHHHH
Q 012101 126 IVLKASCQLFALEIGRQLHSLAVRL-GL-ESNEFCESGFISLYSKAGDFEKARKVFD----ENPERKL-GSWNAIIAGLS 198 (471)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~----~~~~~~~-~~~~~li~~~~ 198 (471)
-..+.--+.|+...+..+|+...+. |- ..+...+.+....=.++..++.|.-+|. .+++... ..|......--
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 7777777777888888887776652 21 1112233333333345566677766663 3443322 23444444444
Q ss_pred cCCChhHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCCh--hHHHHHHHH
Q 012101 199 QDGRAKEAIDM--------FIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDT--LMLNSLIDM 268 (471)
Q Consensus 199 ~~~~~~~a~~~--------~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~l~~~ 268 (471)
+-|+.....+. |+.+...+ +.|-.+|-..+..-...|+.+...++|+.. +.. ++|-. ..|...|-.
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErA--Ian-vpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERA--IAN-VPPASEKRYWRRYIYL 367 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHH--Hcc-CCchhHHHHHHHHHHH
Confidence 44554433332 33333332 456667777777777778888888888877 433 33321 122222211
Q ss_pred --------HHhcCChHHHHHHHHhcCC---CCHhhHHHH----HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 269 --------YGKCGRMDLAYKVFWEIDQ---PNVSSWTSM----IVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 269 --------~~~~g~~~~A~~~~~~~~~---~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
=....+.+.+.++|+...+ ....||.-+ ..--.+..+...|.+++-... |.-|...+|...|.
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence 1245677778888876654 233444333 333345677888888887665 55788888888888
Q ss_pred HhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKA----NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~l~~~~~~~~~~ 409 (471)
.=.+.+.++.+..++++..+- + +-+..+|......=...|+.+.|..+|+-.-.+| -...|.+.|..-...|.+
T Consensus 446 lElqL~efDRcRkLYEkfle~-~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEF-S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhc-C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 888888888888888888653 1 3355677777777777888888888888772233 345677777777788888
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHH-----cCC-----------ChHHHHHHHHHhhc
Q 012101 410 KMGEWVAKHLQELEPWSDGAYVVLSNIYA-----SRG-----------LWEEVERIRAVMKH 455 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 455 (471)
++|..+++++.+..+... +|...+..-. ..| ....|.++|++...
T Consensus 524 ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 524 EKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 888888888887765433 5555554433 333 45567777776643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-11 Score=102.00 Aligned_cols=224 Identities=14% Similarity=0.096 Sum_probs=149.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc------hHHH
Q 012101 88 HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEF------CESG 161 (471)
Q Consensus 88 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 161 (471)
.|-.-++.+. +.+.++|.++|-+|.+.. +-+..+-.+|-+.+.+.|..|.|..++..+.+ .||.. ....
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHH
Confidence 4555555444 457899999999998743 23455566777889999999999999999887 34433 3345
Q ss_pred HHHHHHhcCChhhHHHHhccCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHcC
Q 012101 162 FISLYSKAGDFEKARKVFDENPERKLG---SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDV----TMVSVTSACGS 234 (471)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~ 234 (471)
|..-|...|-+|.|+.+|..+.+.+.. +...|+..|-+..+|++|+++-+++.+.|-.+... .|.-+...+..
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 667788889999999999888764333 67778888989999999999988888776444332 34455555556
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCH----hhHHHHHHHHHhCCChhHHH
Q 012101 235 LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNV----SSWTSMIVGYAANGLANEAL 310 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~ 310 (471)
..+.+.|..+++.. .+.+ +.++..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|...|+.++..
T Consensus 193 ~~~~d~A~~~l~kA--lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 193 SSDVDRARELLKKA--LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhHHHHHHHHHHH--HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 66777777777766 3332 22334444455666666666666666666655333 23344555555566666665
Q ss_pred HHHHHHHHc
Q 012101 311 DCFHYMRES 319 (471)
Q Consensus 311 ~~~~~m~~~ 319 (471)
..+.++.+.
T Consensus 270 ~fL~~~~~~ 278 (389)
T COG2956 270 NFLRRAMET 278 (389)
T ss_pred HHHHHHHHc
Confidence 555555554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-12 Score=119.50 Aligned_cols=276 Identities=13% Similarity=0.054 Sum_probs=213.6
Q ss_pred ChhhHHHHhccCCCC--Ccc-hHHHHHHHHHcCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHcCcCCHHHHHHHH
Q 012101 171 DFEKARKVFDENPER--KLG-SWNAIIAGLSQDGRAKEAIDMFIGLKKCG--FEPDDVTMVSVTSACGSLGDLELALQVH 245 (471)
Q Consensus 171 ~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~~ 245 (471)
+..+|...|..++.. |+. ...-+..+|...+++++|.++|+.+.+.. ..-+...|.+.+--+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 467888888886543 332 44567788999999999999999998763 12356778777765432 2223333
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 012101 246 KYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP---NVSSWTSMIVGYAANGLANEALDCFHYMRESGIR 322 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 322 (471)
.+- +-.-.+-.+.+|-++.++|.-.++.+.|.+.|++..+. ...+|+.+..-+.....+|.|...|+....
T Consensus 410 aq~--Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---- 483 (638)
T KOG1126|consen 410 AQD--LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---- 483 (638)
T ss_pred HHH--HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----
Confidence 322 22223446789999999999999999999999999874 446788888888888999999999998764
Q ss_pred CCHHHHH---HHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 012101 323 PNHVTFV---GVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIW 396 (471)
Q Consensus 323 p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 396 (471)
.|...|+ .+.-.|.+.++++.|+-.|+++.+ +.|. .+....+...+.+.|+.++|++++++. ...| |...-
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 3444444 455679999999999999999974 4564 455667778889999999999999999 4454 55555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 397 GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
-.-+..+...+++++|.+.++++++.-|++...|..++..|.+.|+.+.|+.-|--+.+-+++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 556677888899999999999999999999999999999999999999999988888776554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-12 Score=117.65 Aligned_cols=279 Identities=12% Similarity=0.058 Sum_probs=210.9
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCC------CcchHHHHHHHHHcCCChhHHHHH
Q 012101 136 ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPER------KLGSWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~ 209 (471)
+..+|...|..... .+.-+..+...+..+|...+++++|+++|+.+... +...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 45778888888433 33334466677889999999999999999887643 55678877765443 233444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 012101 210 FIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS-DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP 288 (471)
Q Consensus 210 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 288 (471)
+.+-.-.--+-.+.+|.++.++|.-.++.+.|.+.|+...+ +.| ...+|+.+..-+.....+|+|...|+.....
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 43222222255678999999999999999999999998833 233 5778888888899999999999999999988
Q ss_pred CHhhHHH---HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 012101 289 NVSSWTS---MIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHY 364 (471)
Q Consensus 289 ~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 364 (471)
|+..||+ +...|.+.++++.|+-.|++..+-+ +-+.+....+...+.+.|+.++|+++++++... .|. +..-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~kn~l~~ 560 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPKNPLCK 560 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCCCchhH
Confidence 8877776 5667889999999999999988753 224566666777788889999999999998754 332 2232
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 365 GCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 365 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
-..+..+...+++++|+..++++ .+.|+. ..+..+...|.+.|+.+.|..-|..+.+++|...
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 34556677889999999999999 666754 5777788999999999999999999999988644
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8e-10 Score=102.78 Aligned_cols=339 Identities=15% Similarity=0.094 Sum_probs=239.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHh
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSK 168 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 168 (471)
|+.-...|.+.+.++-|..+|....+-- +-+...|......--..|..+....++++.+..- +.....|-.....+-.
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWK 596 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHh
Confidence 4444445555556666666776666542 3345566666666566677777777777777642 4444556556666667
Q ss_pred cCChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHH
Q 012101 169 AGDFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVH 245 (471)
Q Consensus 169 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 245 (471)
.||...|..++...-+. +...|-+.+..-..+.+++.|..+|.+.... .|+...|..-+..-.-.++.++|.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 78888888887765432 3446778888888888888888888877754 677777766666666677888888888
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 012101 246 KYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN-VSSWTSMIVGYAANGLANEALDCFHYMRESGIR 322 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 322 (471)
++. ++. ++.-...|-.+.+.+-+.++.+.|...|..-.+ |+ +..|-.+...--+.|+.-+|..++++.+-++ +
T Consensus 675 Ee~--lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 675 EEA--LKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHH--HHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 877 443 333455777778888888888888887776554 44 3556666666667778888888888777664 3
Q ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcC----------------------------CCCChhHHHHHHHHHHhc
Q 012101 323 PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ----------------------------IEPRFAHYGCMVDLLGRA 374 (471)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------------~~p~~~~~~~li~~~~~~ 374 (471)
-+...|...|..-.+.|..+.|..++.+..+.+. ...|..+...+...+...
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSE 830 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 3566777777777788888877777766655421 133455556667777888
Q ss_pred CCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 375 GLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 375 g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
.++++|.+.|.+. .+.||. .+|.-+...+.++|.-+.-.+++.+....+|.....|.....
T Consensus 831 ~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 8999999999998 777765 588889999999999999999999999999877666665544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-10 Score=100.51 Aligned_cols=297 Identities=12% Similarity=0.053 Sum_probs=210.1
Q ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 012101 89 WNNIIRLYTR--LEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLY 166 (471)
Q Consensus 89 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 166 (471)
-..+..+..+ .|++.+|+++..+-.+.+-. ....|..-..+.-+.||.+.+-.++.+..+..-.++..+.-+.....
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3445555544 58888888888887766533 23345555667777888888888888877753355555666666777
Q ss_pred HhcCChhhHHHHhccC---CCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHH
Q 012101 167 SKAGDFEKARKVFDEN---PERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQ 243 (471)
Q Consensus 167 ~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 243 (471)
...|+.+.|..-.+++ ...++........+|.+.|++.+...++..|.+.|.--|+.. .+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~ 226 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------AR 226 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HH
Confidence 7777777777666553 344556777777778888888888888777777765433321 11
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 012101 244 VHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESG 320 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 320 (471)
+ ...+|+.+++-....+..+.-...++.... .++..-.+++.-+.+.|+.++|.++..+..+++
T Consensus 227 l-------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~ 293 (400)
T COG3071 227 L-------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ 293 (400)
T ss_pred H-------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 1 112455566555555555555566666653 556666777888888899999999998888887
Q ss_pred CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 012101 321 IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCL 399 (471)
Q Consensus 321 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 399 (471)
..|+. ...-.+.+-++.+.-++..+.-.+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. ...|+..+|+-+
T Consensus 294 ~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~l 367 (400)
T COG3071 294 WDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAEL 367 (400)
T ss_pred cChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHH
Confidence 77762 222345677888777777777767666555 56778889999999999999999987 888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 012101 400 MGACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
..++.+.|+..+|.+..++...+
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999998887644
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-11 Score=100.12 Aligned_cols=291 Identities=13% Similarity=0.052 Sum_probs=204.4
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC-CCCcc------hHHHHHH
Q 012101 123 TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP-ERKLG------SWNAIIA 195 (471)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~------~~~~li~ 195 (471)
.|..=++.+. .++.++|...|-+|.+.. +.+..+.-+|-+.|-+.|..|.|+++-..+. .||.. +...|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 3444444443 358999999999998843 4455666788899999999999999998755 45554 4556778
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCCh----hHHHHHHHHHHh
Q 012101 196 GLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDT----LMLNSLIDMYGK 271 (471)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 271 (471)
-|...|-++.|..+|..+.+.| .--......++..|-...+|++|.++-+.. .+.+..+.. ..|.-+...+..
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L--~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERL--VKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHcCCccchhHHHHHHHHHHHHHhh
Confidence 8889999999999999998765 344567778899999999999999998888 665544432 345556666666
Q ss_pred cCChHHHHHHHHhcCCCCH---hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHH
Q 012101 272 CGRMDLAYKVFWEIDQPNV---SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
..+.+.|..++.+..+.|. ..--.+.+.+...|++..|.+.|+...+.+..--..+...|..+|.+.|+.++....+
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7788888888887765322 3333455677788888888888888888754444566777888888888888888888
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 012101 349 EMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEG-MPMKANVVIWGCLMGACEKFG---NVKMGEWVAKHLQE 421 (471)
Q Consensus 349 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 421 (471)
..+.+. .++...-..+.+.-......+.|...+.+ +.-+|+...+..++..-.... ...+-...++.|..
T Consensus 273 ~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 273 RRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 877654 34444444555544445555555554444 477888888888887665433 34444555555554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-11 Score=114.90 Aligned_cols=251 Identities=14% Similarity=0.107 Sum_probs=166.3
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCC
Q 012101 107 DIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERK 186 (471)
Q Consensus 107 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 186 (471)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45666777888888888888888888888888888 8888877777777888888888888888877766 666
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHH-HH-------HCCCCCCHHHHHHHHH--------------HHcCcCCHHHHHHH
Q 012101 187 LGSWNAIIAGLSQDGRAKEAIDMFIG-LK-------KCGFEPDDVTMVSVTS--------------ACGSLGDLELALQV 244 (471)
Q Consensus 187 ~~~~~~li~~~~~~~~~~~a~~~~~~-m~-------~~g~~p~~~~~~~li~--------------~~~~~~~~~~a~~~ 244 (471)
..+|..|..+|...||... ++..++ |. ..|+-....-+-..+. .....|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888654 222222 21 1222111111111111 11222333444443
Q ss_pred HHHHHHhhcC-CCCChhHHHHHHHHHHh-cCChHHHHHHHHhcCC-CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 012101 245 HKYVFQVKSK-QKSDTLMLNSLIDMYGK-CGRMDLAYKVFWEIDQ-PNVSSWTSMIVGYAANGLANEALDCFHYMRESGI 321 (471)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 321 (471)
+..+ -... ..|..+ +++-... ...+++-...-+...+ ++..+|.+.+.+-...|+.+.|..++.+|.+.|+
T Consensus 162 l~~~--Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 162 LAKV--PVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HhhC--CcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 3322 1100 111111 1221111 1223444444444444 8999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 012101 322 RPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL 376 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
+.+..-|..|+-+ .++..-++.+++-|.+. |+.|+..|+.-.+-.+...|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 9999888888755 78888888888888666 999999999877777666554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-10 Score=99.54 Aligned_cols=289 Identities=9% Similarity=0.022 Sum_probs=176.6
Q ss_pred HHHHHHHhcccccCchHHHHHHhcccCCC--CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 012101 55 ATQLSKCTNLLQLNQIYAHIIRTHMLHSY--SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASC 132 (471)
Q Consensus 55 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 132 (471)
..+..+..+.. .|++.+|+++..+-... -.+..|-.-..+--+.|+.+.+-..+.+..+.--.++...+-+..+...
T Consensus 86 ~~~~egl~~l~-eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLF-EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHh-cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 34455554433 59999999998765432 2335666667777889999999999999987533455566666677889
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcc-----------hHHHHHHHHHcCC
Q 012101 133 QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLG-----------SWNAIIAGLSQDG 201 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~li~~~~~~~ 201 (471)
..|+.+.|..-++++.+.+ +.++.+.......|.+.|++.....+...+.+.+.. +|+.++.-....+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999876 566778888999999999999999999998876543 3444444333333
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012101 202 RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKV 281 (471)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (471)
..+.-...++..... .+-++..-.+++.-+.+.|+.+.|.++.++. .+.+..++
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~--Lk~~~D~~----------------------- 297 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDA--LKRQWDPR----------------------- 297 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHH--HHhccChh-----------------------
Confidence 333323333332222 2223333334444444444444444444444 44433332
Q ss_pred HHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh
Q 012101 282 FWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF 361 (471)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 361 (471)
-...-.+.+-++...-.+..++-.+. .+-++-.+.+|-..|.+.+.+.+|.+.|+... ...|+.
T Consensus 298 ------------L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~ 361 (400)
T COG3071 298 ------------LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAAL---KLRPSA 361 (400)
T ss_pred ------------HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCCCh
Confidence 11112233445555545544443332 12222445556666666666666666666554 335666
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
.+|+.+.+++.+.|++++|.+..++.
T Consensus 362 ~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 362 SDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 66666666666666666666666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-09 Score=99.67 Aligned_cols=422 Identities=13% Similarity=0.025 Sum_probs=281.6
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC-CCCchhhHHHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH-SYSAAFHWNNIIRLY 96 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~li~~~ 96 (471)
+-++++.+...+..+.+..+-+... ++.-||. -.--+..++.- .++++.|..+...-. ...|..+.......+
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~--~l~~dp~-d~~~~aq~l~~---~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVA--GLTNDPA-DIYWLAQVLYL---GRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH--hccCChH-HHHHHHHHHHh---hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 4445666666666666555555444 4445555 33445555555 456677766654332 236777888888899
Q ss_pred HhCCCchHHHHHHH----HHHHC-------C--CCCCcch----HHHHHH-------HHhccCCchHHHHHHHHHHHhCC
Q 012101 97 TRLEAPKKALDIYI----FMSRA-------G--VLPDCYT----LPIVLK-------ASCQLFALEIGRQLHSLAVRLGL 152 (471)
Q Consensus 97 ~~~g~~~~A~~~~~----~m~~~-------g--~~p~~~~----~~~ll~-------~~~~~~~~~~a~~~~~~~~~~~~ 152 (471)
.+..++++|..++. .+... + +.+|..- -+.-.. .+....+.++|...|.+....
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~-- 170 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA-- 170 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--
Confidence 99999999999998 32110 0 1122111 111111 233444567777777765543
Q ss_pred CCCcchHHHHHHHHHhc---------------------CChhhHHHHhcc----CC----------------CCCcchHH
Q 012101 153 ESNEFCESGFISLYSKA---------------------GDFEKARKVFDE----NP----------------ERKLGSWN 191 (471)
Q Consensus 153 ~~~~~~~~~ll~~~~~~---------------------g~~~~a~~~~~~----~~----------------~~~~~~~~ 191 (471)
|...+.++...-... .+.+.-+.+|+- +. +.++....
T Consensus 171 --D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 171 --DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred --chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 333333222111110 011112222221 00 01222333
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 012101 192 AIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK 271 (471)
Q Consensus 192 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (471)
.-..-+...+++++..++.+...+.. ++....+..-|.++...|+..+-..+-..+ ++ ..+....+|-++.--|.-
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~L--V~-~yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKL--VD-LYPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHH--HH-hCCCCCcchhhHHHHHHH
Confidence 44455677889999999999888764 555556666666777888877666666666 33 345567889999999999
Q ss_pred cCChHHHHHHHHhcCCCC---HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHH
Q 012101 272 CGRMDLAYKVFWEIDQPN---VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
.|+..+|++.|.+....| ...|-.+...|+..|..|+|+..+...-+.- +-...-+--+---|.+.+..+.|.++|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999877644 3689999999999999999999998876541 111111222333578889999999999
Q ss_pred HHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012101 349 EMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM--------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKH 418 (471)
Q Consensus 349 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 418 (471)
.... ++.| |+...+-+.-.....+.+.+|..+|+.. +..+ -..+++.|..+|.+.+.+++|+..+++
T Consensus 404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 9987 4445 4556677766777788999999998876 1122 456789999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 419 LQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
...+.|.+..++..++-.|...|+++.|.+.|.+..-..
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998876543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.5e-11 Score=103.51 Aligned_cols=198 Identities=13% Similarity=0.000 Sum_probs=156.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA 334 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 334 (471)
....+..+...|...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345677777888888888888888887654 345677778888888899999999998888764 3345667777788
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMG 412 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a 412 (471)
+...|++++|.+.++..............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999998754222233456777888899999999999999988 4444 456788888999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 413 EWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
...+++..+..+.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999998887766777778888899999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.1e-13 Score=85.04 Aligned_cols=50 Identities=26% Similarity=0.549 Sum_probs=46.6
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQ 133 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 133 (471)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-09 Score=96.99 Aligned_cols=337 Identities=12% Similarity=0.076 Sum_probs=197.2
Q ss_pred cCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHH--HHHHHHhccCCchHHHH
Q 012101 67 LNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLP--IVLKASCQLFALEIGRQ 142 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 142 (471)
.|....|...|..... +..-.+|-.|... ..+.+. ...... |.+.|...+. .+..++-.....+++.+
T Consensus 177 ~~~~s~A~~sfv~~v~~~P~~W~AWleL~~l---it~~e~----~~~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 177 LGLLSLAIDSFVEVVNRYPWFWSAWLELSEL---ITDIEI----LSILVV-GLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred hchHHHHHHHHHHHHhcCCcchHHHHHHHHh---hchHHH----HHHHHh-cCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888776543 2232233333322 222222 222221 1222222221 12345555556777777
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCc------chHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 012101 143 LHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKL------GSWNAIIAGLSQDGRAKEAIDMFIGLKKC 216 (471)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 216 (471)
-.+.....|++-+...-+....+.-...|+++|+.+|+++.+.|+ .+|+.++-. +..+- .+.++.+-.-.
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s--kLs~LA~~v~~ 324 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS--KLSYLAQNVSN 324 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH--HHHHHHHHHHH
Confidence 777777777666665555555556667788888888887765543 356555533 22211 12222111111
Q ss_pred CCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhH
Q 012101 217 GFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSW 293 (471)
Q Consensus 217 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 293 (471)
--+--+.|...+.+-|+-.++.++|...|+.. ++-+. .....|+.+..-|...++...|..-++...+ .|-..|
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRA--LkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW 401 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRA--LKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW 401 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHH--HhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence 01223346666777777777777777777777 44432 2355677777777777777777777776654 455677
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR 373 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 373 (471)
--+.++|.-.+.+.-|+-+|++..+.. +-|...+.+|..+|.+.++.++|++.|.....- | ..+...+..|.+.|.+
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEE 478 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHH
Confidence 777777777777777777777777652 335667777777777777888888877777553 2 2344567777777777
Q ss_pred cCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 374 AGLLEEARAMVEGM-------P-MKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 374 ~g~~~~A~~~~~~m-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
.++.++|...|+.. | +.|. ..+..-|..-+.+.+++++|..+......
T Consensus 479 l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 77777777776654 2 2221 12222244555666777766665554443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-09 Score=105.16 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHH
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-----PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS---DGAYVVL 433 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l 433 (471)
..|..||+.++...+.+.|..+.++. .+..|..-+..+.+...+.+....+..+++++.+.-... ..+...+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 56788999999999999999999988 344566778888899999999999999999998743222 2345567
Q ss_pred HHHHHcCCChHHHHHHHHHhhcCCCccCCCcceeec
Q 012101 434 SNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATR 469 (471)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 469 (471)
.+..+..|+.+.-.++.+-+...|+.. .|--|.-+
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~vh 606 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWMVH 606 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhh-cccceEEE
Confidence 777788899999999999888888765 34444433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=81.80 Aligned_cols=50 Identities=30% Similarity=0.618 Sum_probs=45.7
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-10 Score=107.33 Aligned_cols=233 Identities=19% Similarity=0.211 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhh---cC-CCCCh-hHHHHHHHHHHhcCChHHHHHHHHhcCC---------
Q 012101 222 DVTMVSVTSACGSLGDLELALQVHKYVFQVK---SK-QKSDT-LMLNSLIDMYGKCGRMDLAYKVFWEIDQ--------- 287 (471)
Q Consensus 222 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------- 287 (471)
..+...+...|...|+++.|+.+++...+.- .| ..|.. ...+.+...|...+++++|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556667777888888888888887763220 11 11111 1233466678888888888888887653
Q ss_pred -CC-HhhHHHHHHHHHhCCChhHHHHHHHHHHH-----cCC-CCCHH-HHHHHHHHhccCCcHHHHHHHHHHhHHhcC--
Q 012101 288 -PN-VSSWTSMIVGYAANGLANEALDCFHYMRE-----SGI-RPNHV-TFVGVLSACVHGGKVQEGKHFFEMMKNVYQ-- 356 (471)
Q Consensus 288 -~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 356 (471)
|. ..+++.|...|.+.|++++|..++++..+ .|. .|... -++.+...|+..+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 21 24677777888888988888877776543 122 22222 355666778889999999999887765433
Q ss_pred CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 012101 357 IEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM---------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE- 421 (471)
Q Consensus 357 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 421 (471)
..++ ..+++.|...|...|++++|.++++.. +..+ ....++.+..+|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 356889999999999999999999987 1223 245788899999999999999999987654
Q ss_pred ---cCCCCC---chHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 422 ---LEPWSD---GAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 422 ---~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
.+|..+ .+|..|+.+|.+.|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 455554 368889999999999999999988775
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-09 Score=105.47 Aligned_cols=261 Identities=11% Similarity=0.016 Sum_probs=183.7
Q ss_pred CcchHHHHHHHHHc-----CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHc---------CcCCHHHHHHHHHHHHH
Q 012101 186 KLGSWNAIIAGLSQ-----DGRAKEAIDMFIGLKKCGFEPD-DVTMVSVTSACG---------SLGDLELALQVHKYVFQ 250 (471)
Q Consensus 186 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~ 250 (471)
+...|...+.+-.. .++.++|+..|++..+. .|+ ...+..+..++. ..+++++|...+++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A-- 330 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA-- 330 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH--
Confidence 34455566655322 23467999999999876 454 444544444332 335588999999988
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-H
Q 012101 251 VKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH-V 326 (471)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~ 326 (471)
++.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|...+++..+.. |+. .
T Consensus 331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 5543 33677888888999999999999999998765 4 45678888899999999999999999998864 442 2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVV-IWGCLMGAC 403 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~ 403 (471)
.+..++..+...|++++|...++++.+.. .| +...+..+..++...|+.++|...++++ ...|+.. ..+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 33334445666899999999999986541 34 3445677888899999999999999998 5556544 455555667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
...| +.+...++++.+.....+..+..+...|.-.|+-+.+..+ +++.+.+.
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 7777 4788878777664422222233366667777777777766 77777643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.2e-08 Score=92.47 Aligned_cols=285 Identities=11% Similarity=0.047 Sum_probs=198.7
Q ss_pred HhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh-c----
Q 012101 61 CTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASC-Q---- 133 (471)
Q Consensus 61 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~---- 133 (471)
+.. .|+++.|+..++.... .+...........+.+.|+.++|..+|..+.+.+ |+...|...+..+. -
T Consensus 14 l~e---~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 14 LEE---AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHH---CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 555 7889999999987543 2334456667888999999999999999999876 66666655555444 1
Q ss_pred -cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChh-hHHHHhccCCCCCcc-hHHHHHHHHHcCCChhHHHHHH
Q 012101 134 -LFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFE-KARKVFDENPERKLG-SWNAIIAGLSQDGRAKEAIDMF 210 (471)
Q Consensus 134 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~ 210 (471)
..+.+...++++.+.+.- |.......+.-.+.....+. .+...+..+..++++ +|+.+-..|......+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 224677788888887643 33333333322222323343 344555666677776 5666666666555555566666
Q ss_pred HHHHHC----C----------CCCCH--HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 012101 211 IGLKKC----G----------FEPDD--VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGR 274 (471)
Q Consensus 211 ~~m~~~----g----------~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 274 (471)
...... | -+|+. .++..+...|...|++++|.++.+.. +... +..+..|..-...|-+.|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a--I~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA--IEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--HhcC-CCcHHHHHHHHHHHHHCCC
Confidence 665532 1 12333 24456677788999999999999988 5554 3347788889999999999
Q ss_pred hHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH--------HHHHHHHhccCCcHHH
Q 012101 275 MDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT--------FVGVLSACVHGGKVQE 343 (471)
Q Consensus 275 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--------~~~ll~~~~~~~~~~~ 343 (471)
+.+|.+..+.... .|-..-+-.+..+.+.|++++|.+++......+..|-... ......+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999998876 3445566678888999999999999999887765443322 1334567889999999
Q ss_pred HHHHHHHhHHhc
Q 012101 344 GKHFFEMMKNVY 355 (471)
Q Consensus 344 a~~~~~~~~~~~ 355 (471)
|++.|..+.+.+
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999998886653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-09 Score=91.10 Aligned_cols=196 Identities=14% Similarity=0.146 Sum_probs=99.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDM 268 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (471)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++.. .... +.+...+..+...
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRA--LTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhhC-CCCHHHHHHHHHH
Confidence 45666666666677777777776665542 333455555566666666666666666665 3332 1233344445555
Q ss_pred HHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCcHHHHHHH
Q 012101 269 YGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP-NHVTFVGVLSACVHGGKVQEGKHF 347 (471)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 347 (471)
+...|++++|.+.|++. ......| ....+..+...+...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQA-------------------------------IEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHHHHH-------------------------------HhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555544 3321111 122333344444555555555555
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 348 FEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 348 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
+.+..... +.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|..+.+.+.+
T Consensus 158 ~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 158 LTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 55554321 112334444555555555555555555554 2122 333444445555555666666555555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-07 Score=82.92 Aligned_cols=368 Identities=13% Similarity=0.015 Sum_probs=193.6
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCC--chHHHHH-------------HHHHHHCC-
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEA--PKKALDI-------------YIFMSRAG- 116 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~-------------~~~m~~~g- 116 (471)
.-...+..|.. .++-..|.....++|.+....--|.++..+-+.|. .+..... +.-..+.+
T Consensus 99 ~~r~~aecy~~---~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 99 QRRRAAECYRQ---IGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHH---HccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 33445556666 56678888888888765444445555555544442 1221111 11111111
Q ss_pred --------------CCCCcchHHHHHHHHhc--cCCchHHHHHHHHHHHhC-CCCCcchHHHHHHHHHhcCChhhHHHHh
Q 012101 117 --------------VLPDCYTLPIVLKASCQ--LFALEIGRQLHSLAVRLG-LESNEFCESGFISLYSKAGDFEKARKVF 179 (471)
Q Consensus 117 --------------~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 179 (471)
++|+..+....+.++++ .++-..+.+.+-.+.... ++.|+.....+.+.+...|+.++|.-.|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 12333333334443332 233333333333333322 4455556666666777777777777777
Q ss_pred ccCCCCCcch---HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC
Q 012101 180 DENPERKLGS---WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK 256 (471)
Q Consensus 180 ~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 256 (471)
++...-|+.+ ...-.-.+.+.|+.+....+...+.... .-....|..-.......++++.|..+-+.. +... +
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~--I~~~-~ 331 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKC--IDSE-P 331 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHH--hccC-c
Confidence 6644333321 1222223345566666655555554321 122222322233334455666666666555 3222 1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH-
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVL- 332 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll- 332 (471)
-+...+-.-..++...|+.++|.-.|+.... -+...|.-++.+|...|++.+|.-+-+..... ++.+..+...+-
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGT 410 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcc
Confidence 1233344444556666777777776765543 34567777777777777777776665554433 233444443331
Q ss_pred HHh-ccCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCH
Q 012101 333 SAC-VHGGKVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 333 ~~~-~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~ 409 (471)
..| -....-++|.++++.-. .+.|+- ...+.+...+...|..+++..++++. ...||....+.|.+.+...+.+
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhH
Confidence 122 22233466666666655 234542 23445556666777777777777776 6667777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCchHH
Q 012101 410 KMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
.+|...|....+.+|.+..+..
T Consensus 488 Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHHHHHHHHHhcCccchHHHH
Confidence 7777777777777776554433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-08 Score=93.61 Aligned_cols=271 Identities=14% Similarity=0.085 Sum_probs=177.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHh
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSK 168 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 168 (471)
-..-..-+...+++++..++++...+.. ++....+..-|.++...|+..+-..+-.++++. .|....+|-++.--|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 3344455666788888888888887764 556666666677777777777777777777664 35666777777777777
Q ss_pred cCChhhHHHHhccCCCCCc---chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHH
Q 012101 169 AGDFEKARKVFDENPERKL---GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVH 245 (471)
Q Consensus 169 ~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 245 (471)
.|+..+|++.|.+...-|. ..|-.....|+-.|..+.|+..|...-+. ++...-.+.-+.--|.+.++.+.|.+.|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 7888888888877554443 37888888888888888888877665543 1222222334445567778888888888
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC------C----CHhhHHHHHHHHHhCCChhHHHHHHHH
Q 012101 246 KYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ------P----NVSSWTSMIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (471)
.+. .. -.+.|+.+.+-+.-.....+.+.+|..+|+.... + -..+++.+..+|.+.+.+++|+..+++
T Consensus 404 ~~A--~a-i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQA--LA-IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHH--Hh-cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 776 32 2344666777777777777778888877776542 1 123455566666666666777766666
Q ss_pred HHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 316 MRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 316 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
..... +-|..++.++.-.|...|+++.|.+.|.+.. .+.|+..+...++.
T Consensus 481 aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 481 ALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLK 530 (611)
T ss_pred HHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHH
Confidence 66542 3355566666666666666666666666665 45666555544444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-08 Score=87.33 Aligned_cols=218 Identities=9% Similarity=-0.004 Sum_probs=170.8
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChH
Q 012101 197 LSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMD 276 (471)
Q Consensus 197 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 276 (471)
+.-.|+...|..-|+..+.....+ ...|..+...|....+.++..+.|... .+-+ +-|+.+|.--.+.+.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A--~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKA--EDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHH--HhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 344688999999999998875333 333778888899999999999999988 4433 335667777777788889999
Q ss_pred HHHHHHHhcCCCC---HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 277 LAYKVFWEIDQPN---VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 277 ~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
+|..=|++....+ +..|-.+--+..+.+++++++..|++.+++ ++--...|+.....+...+++++|.+.|+...+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999988743 445555555666788999999999999886 455577899999999999999999999999875
Q ss_pred hcCCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 012101 354 VYQIEPR---------FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 354 ~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
. .|+ +.+-..++..-. .+++..|.++++.. .+.| ....|..|...-.+.|+.++|+++|++...+
T Consensus 491 L---E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 L---EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred h---ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3 343 222223333333 38999999999998 7777 5679999999999999999999999988765
Q ss_pred C
Q 012101 423 E 423 (471)
Q Consensus 423 ~ 423 (471)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 4
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-09 Score=103.26 Aligned_cols=206 Identities=10% Similarity=-0.100 Sum_probs=102.1
Q ss_pred ChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHH
Q 012101 171 DFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKY 247 (471)
Q Consensus 171 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 247 (471)
++++|...+++..+. +..+|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++.
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 355666666554332 33355555555666666666666666666553 23344555555566666666666666666
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 012101 248 VFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP 323 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 323 (471)
. ...... +...+..++..+...|++++|...+++..+ | +...+..+..++...|+.++|...+.++... .|
T Consensus 398 A--l~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~ 472 (553)
T PRK12370 398 C--LKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EI 472 (553)
T ss_pred H--HhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cc
Confidence 6 333222 111222233334455666666666665432 2 2333455555666666666666666665443 33
Q ss_pred CHHHH-HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 324 NHVTF-VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 324 ~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
+..+. +.+...|...| +.|...++.+.+...-.+....+ +-..|.-.|+.+.+..+ +++
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHh
Confidence 33322 23333444444 35555555554432223322222 22333444555544444 444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-09 Score=99.60 Aligned_cols=233 Identities=14% Similarity=0.141 Sum_probs=172.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHHcCcCCHHHHHHHHHHHHHhhcC----CCC
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKC-----G-FEPDDVTM-VSVTSACGSLGDLELALQVHKYVFQVKSK----QKS 257 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 257 (471)
+...+...|...|++++|..++++..+. | ..|...+. +.+...|...+++.+|..+|+.+.++... ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555888899999999999988877654 2 13444333 34677788899999999999988543331 112
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHhcCC----------CCH-hhHHHHHHHHHhCCChhHHHHHHHHHHHc---CCC
Q 012101 258 -DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----------PNV-SSWTSMIVGYAANGLANEALDCFHYMRES---GIR 322 (471)
Q Consensus 258 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~ 322 (471)
-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.+...++..+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 234677778889999999988877766543 233 24566778888999999999999876542 122
Q ss_pred CC----HHHHHHHHHHhccCCcHHHHHHHHHHhHHhc----C-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 012101 323 PN----HVTFVGVLSACVHGGKVQEGKHFFEMMKNVY----Q-IEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM----- 387 (471)
Q Consensus 323 p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----- 387 (471)
++ ..+++.+...|.+.|++++|.++++++.... | ..+. ...++.|...|.+.+++++|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 3578899999999999999999999887642 1 1222 345678888999999999999988876
Q ss_pred ---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 388 ---PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 388 ---~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
+..|+. .+|..|...|.+.|+++.|+++.+.+.+
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 334554 5899999999999999999999988864
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-07 Score=79.51 Aligned_cols=389 Identities=12% Similarity=0.029 Sum_probs=210.2
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRL 95 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~ 95 (471)
-.|-|..+...++...+..+..+..-++-..... +.-=+...+.+ .|++++|..++..+.. .++...|-.+...
T Consensus 25 K~P~Ledfls~rDytGAislLefk~~~~~EEE~~-~~lWia~C~fh---LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc 100 (557)
T KOG3785|consen 25 KMPELEDFLSNRDYTGAISLLEFKLNLDREEEDS-LQLWIAHCYFH---LGDYEEALNVYTFLMNKDDAPAELGVNLACC 100 (557)
T ss_pred cCchHHHHHhcccchhHHHHHHHhhccchhhhHH-HHHHHHHHHHh---hccHHHHHHHHHHHhccCCCCcccchhHHHH
Confidence 4556788888888888777777665555433322 22223344566 7889999988876654 3555667777777
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhH
Q 012101 96 YTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 96 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 175 (471)
+.-.|.+.+|..+-.+..+ ++---..++....+.++-++-..+.+.+... ..-.-+|.....-.-.+++|
T Consensus 101 ~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeA 170 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEA 170 (557)
T ss_pred HHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHH
Confidence 7778888888887665422 3333444556667777777766666665431 12223344444444567888
Q ss_pred HHHhccCCCCC--cchHHH-HHHHHHcCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHcCc--CCHH----------
Q 012101 176 RKVFDENPERK--LGSWNA-IIAGLSQDGRAKEAIDMFIGLKKCGFEPDD-VTMVSVTSACGSL--GDLE---------- 239 (471)
Q Consensus 176 ~~~~~~~~~~~--~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~--~~~~---------- 239 (471)
.+++.+....+ ....|. +.-+|.+..-++-+.+++.-..+. .||+ ...+....-..+. |+..
T Consensus 171 IdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN 248 (557)
T KOG3785|consen 171 IDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADN 248 (557)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc
Confidence 88888765433 334443 334566777777777777766654 3443 2222222111111 1111
Q ss_pred ------HHHHHHHHHHHhhcCCC------C-----ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhH---------
Q 012101 240 ------LALQVHKYVFQVKSKQK------S-----DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSW--------- 293 (471)
Q Consensus 240 ------~a~~~~~~~~~~~~~~~------~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 293 (471)
.+..+.+.-.-+-.+.+ | -+..--.|+--|.+.+++.+|..+.+++....+.-|
T Consensus 249 ~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 249 IDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAA 328 (557)
T ss_pred ccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence 11111110000000000 0 011122234446677788888777777654222221
Q ss_pred ----------------------------------HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC
Q 012101 294 ----------------------------------TSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG 339 (471)
Q Consensus 294 ----------------------------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 339 (471)
.++...+.-..++++++-+++..+.-=..-|.+.| .+.++++..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence 22333333344445555444444433222222222 3445566667
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 012101 340 KVQEGKHFFEMMKNVYQIEPRFAHYG-CMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCL-MGACEKFGNVKMGEWVAK 417 (471)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~ 417 (471)
.+.+|+++|-.+... .+ .|..+|. .|.++|.+++.++.|+.++-.+....+..++-.+ .+-|.+.+.+--|.+.|+
T Consensus 408 ny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 408 NYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred ChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777777766421 22 2334443 4556777777777777777777544344444333 356777777777777777
Q ss_pred HHHhcCCC
Q 012101 418 HLQELEPW 425 (471)
Q Consensus 418 ~~~~~~~~ 425 (471)
.+..++|.
T Consensus 486 ~lE~lDP~ 493 (557)
T KOG3785|consen 486 ELEILDPT 493 (557)
T ss_pred HHHccCCC
Confidence 77777663
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-09 Score=91.21 Aligned_cols=229 Identities=14% Similarity=0.094 Sum_probs=128.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 012101 191 NAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYG 270 (471)
Q Consensus 191 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (471)
+-+.++|.+.|.+.+|...|+.-.+. .|-+.||..+-+.|.+..+++.|..++.+- ++ .++-++....-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~g--ld-~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEG--LD-SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhh--hh-cCCchhhhhhhhHHHHH
Confidence 45677777888888888777776665 566667777777777777777777777765 32 22333333344455555
Q ss_pred hcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHH
Q 012101 271 KCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHF 347 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 347 (471)
..++.++|.++|+...+ .++....++..+|.-.++++-|+.+|+++...|+. +...|+.+--+|...++++-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 55666666666665544 33344444455555566666666666666666544 444455555555555666655555
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 348 FEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 348 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
|.+.... --.|+. -...|..+.......||+..|.+.|+-....++.+.
T Consensus 381 f~RAlst-at~~~~------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 381 FQRALST-ATQPGQ------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHHHhh-ccCcch------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 5555332 111221 112333344444444555555555555555555555
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 428 GAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
..++.|...-.+.|++++|..++......
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 55555555555555555555555554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-07 Score=84.51 Aligned_cols=380 Identities=13% Similarity=0.098 Sum_probs=246.8
Q ss_pred cCchHHHHHHhcccC--CCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 012101 67 LNQIYAHIIRTHMLH--SYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLH 144 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 144 (471)
.|+.++|......-- ...+.+.|..+--.+....++++|++.|......+ +-|...+.-+--.-++.|+++.....-
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 566777877655322 23566788888888888899999999999998765 345667777766678888998888887
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC-----CCcchHH------HHHHHHHcCCChhHHHHHHHHH
Q 012101 145 SLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE-----RKLGSWN------AIIAGLSQDGRAKEAIDMFIGL 213 (471)
Q Consensus 145 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~------~li~~~~~~~~~~~a~~~~~~m 213 (471)
..+.+.. +.....|..+..++.-.|+...|..+.+...+ ++...|. --.....+.|..++|++.+..-
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 7777643 34456688888888889999999988876442 2222222 1223456778888888887765
Q ss_pred HHCCCCCCHHHHH-HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChh-HHHHHHHHHHhcCChHHHH-HHHHhcCC--C
Q 012101 214 KKCGFEPDDVTMV-SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTL-MLNSLIDMYGKCGRMDLAY-KVFWEIDQ--P 288 (471)
Q Consensus 214 ~~~g~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~ 288 (471)
... ..|...+. +-...+.+.+++++|..++..+ +... ||.. .|..+..++.+-.+.-++. .+|....+ |
T Consensus 212 e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L--l~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 212 EKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRL--LERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred hhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH--HhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 543 33433333 4455677889999999999988 5443 4444 4444555554333333333 66666554 1
Q ss_pred CHhhHHHHHHHHHh-CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHH----HHHHHHHhHHhcC-------
Q 012101 289 NVSSWTSMIVGYAA-NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQE----GKHFFEMMKNVYQ------- 356 (471)
Q Consensus 289 ~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~------- 356 (471)
-...-.-+--.... ..-.+..-.++..+.+.|+++-...+..+ |-.....+- +..+...+... |
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~ 361 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDD 361 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccc-cCCCcccc
Confidence 11000000001111 22334555677788888877644443333 322222111 11222222111 1
Q ss_pred ---CCCChhHHH--HHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 012101 357 ---IEPRFAHYG--CMVDLLGRAGLLEEARAMVEGM-PMKANVV-IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA 429 (471)
Q Consensus 357 ---~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 429 (471)
-+|+...|+ .++..|-+.|+++.|...++.. +-.|+.+ .|..=.+.+...|+++.|...+++..+++..+...
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 045555554 5677889999999999999998 7788765 56666788999999999999999999999765544
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 430 YVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
-.--+....++++.++|.++.......|.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 44667778899999999999988877664
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=92.14 Aligned_cols=224 Identities=13% Similarity=0.091 Sum_probs=167.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhc
Q 012101 90 NNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKA 169 (471)
Q Consensus 90 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 169 (471)
+.+-++|.+.|-+.+|.+.|+.-.+. .|-+.||..|-++|-+..++..|..++.+.++. ++-|+.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45778889999999999999887765 567788888889999999999999998887763 355555556666778888
Q ss_pred CChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHH
Q 012101 170 GDFEKARKVFDENPE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHK 246 (471)
Q Consensus 170 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 246 (471)
++.++|.++++...+ .++.+...+...|.-.++++-|+.+|+++.+-|+ -+...|+.+.-+|.-.++++.+...|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888999988887543 3455566666777788889999999999888884 566778888888888888888888888
Q ss_pred HHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 012101 247 YVFQVKSKQKS--DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRES 319 (471)
Q Consensus 247 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 319 (471)
.. ....-.| -..+|-.+.......|++..|.+.|+-... .+...+|.|.-.-.+.|++++|..+++.....
T Consensus 383 RA--lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RA--LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HH--HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77 4332222 244566677777777888888888876654 33456777777777778888888887776653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-06 Score=79.54 Aligned_cols=405 Identities=13% Similarity=0.138 Sum_probs=213.3
Q ss_pred HHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHH--HHHH--H
Q 012101 22 LHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNI--IRLY--T 97 (471)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l--i~~~--~ 97 (471)
++..-....++.+.. .....++..|++...+..-+-++.+ .+.+++|+.+.+.-+. ..+++.. =.+| .
T Consensus 19 ln~~~~~~e~e~a~k--~~~Kil~~~pdd~~a~~cKvValIq---~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVK--TANKILSIVPDDEDAIRCKVVALIQ---LDKYEDALKLIKKNGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHH--HHHHHHhcCCCcHhhHhhhHhhhhh---hhHHHHHHHHHHhcch---hhhcchhhHHHHHHHH
Confidence 333333344444333 3334455545543255555556666 7889999866554432 1223332 3444 4
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCc-chHHHHHHHHHhcCChhhH
Q 012101 98 RLEAPKKALDIYIFMSRAGVLPDCY-TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNE-FCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a 175 (471)
+.+..++|+..++ |..++.. +...-...+-+.|++++|..+|+.+.+.+.+... ..-..++.. +---.+
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQV 161 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhH
Confidence 5788899988887 3333333 5555566778889999999999988765532110 000111100 000111
Q ss_pred HHHhccCCCCCcchHHH---HHHHHHcCCChhHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHcCcCCH
Q 012101 176 RKVFDENPERKLGSWNA---IIAGLSQDGRAKEAIDMFIGLKKCG-------------FEPDDV-TMVSVTSACGSLGDL 238 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~-~~~~li~~~~~~~~~ 238 (471)
. +.+..+.....+|.. ....+...|++.+|+++++...+-+ +.-+.. .-..+.-.+-..|+.
T Consensus 162 ~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0 122222211112211 2223344455555555554441110 000000 011122223344555
Q ss_pred HHHHHHHHHHHHhhcCCCCCh----hHH-----------------------------------------------HHHHH
Q 012101 239 ELALQVHKYVFQVKSKQKSDT----LML-----------------------------------------------NSLID 267 (471)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~----~~~-----------------------------------------------~~l~~ 267 (471)
++|..++..+ ++.... |. ... +.++.
T Consensus 241 ~ea~~iy~~~--i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 241 AEASSIYVDI--IKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred HHHHHHHHHH--HHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544 332211 11 001 11111
Q ss_pred HHHhcCChHHHHHHHHhcCCCC-HhhHHHHHHHHH--hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQPN-VSSWTSMIVGYA--ANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEG 344 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (471)
.| .+.-+.+.++-..+.... ...+.+++.... +...+.++.+++...-+....-........+......|+++.|
T Consensus 318 l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 318 LF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 11 233334444444443311 223333433332 2235777888877776653222234555566677889999999
Q ss_pred HHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcC
Q 012101 345 KHFFE--------MMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-----PMKANVV----IWGCLMGACEKFG 407 (471)
Q Consensus 345 ~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~----~~~~l~~~~~~~~ 407 (471)
.+++. .+.+. + ..+.+...++..+.+.++.+.|..++... .-.+... ++.-+...-.+.|
T Consensus 396 ~~il~~~~~~~~ss~~~~-~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEA-K--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhhh-c--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99999 44322 3 33445667888888888877777777765 1122223 3444444556789
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 408 NVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 408 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
+.++|..+++++.+.+|.+..+...++.+|++. +.+.|..+=+.+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999998888999999999987 678887776554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.9e-08 Score=90.99 Aligned_cols=235 Identities=19% Similarity=0.242 Sum_probs=159.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 012101 194 IAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG 273 (471)
Q Consensus 194 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 273 (471)
..-+.+.|+++.|+..|-+.. .....+.+.....+|.+|..+++.+ ..... ....|..+.+.|+..|
T Consensus 713 g~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildni--qdqk~--~s~yy~~iadhyan~~ 779 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNI--QDQKT--ASGYYGEIADHYANKG 779 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHh--hhhcc--ccccchHHHHHhccch
Confidence 334455667777766664332 2334556667788889999888877 44432 3445777888899999
Q ss_pred ChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 274 RMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
+++.|+++|-+.. .++-.|..|.+.|++++|.++-.+.. |.......|..-..-.-+.|++.+|++++-.+.
T Consensus 780 dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 780 DFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred hHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 9999999887653 45667788889999999888765543 444455566666666778888888888876663
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 012101 354 VYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVL 433 (471)
Q Consensus 354 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 433 (471)
.|+. .|.+|-+.|..++..++.++-.-.--..|...+..-+-..|+...|+.-|-+..+ |..-
T Consensus 852 ----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaa 914 (1636)
T KOG3616|consen 852 ----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAA 914 (1636)
T ss_pred ----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHH
Confidence 3553 5678888898888888888772122334666677777888888888877654332 5566
Q ss_pred HHHHHcCCChHHHHHHHHHhhcCCCccCCCcce
Q 012101 434 SNIYASRGLWEEVERIRAVMKHRNLAKIPAYSL 466 (471)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 466 (471)
+++|-..+.|++|.++-+.--..+..+...+-|
T Consensus 915 vnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 915 VNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred HHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 778888888888877765443333333333333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-08 Score=91.39 Aligned_cols=231 Identities=12% Similarity=0.023 Sum_probs=151.3
Q ss_pred HHcCCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 012101 197 LSQDGRAKEAIDMFIGLKKCG-FEPD--DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG 273 (471)
Q Consensus 197 ~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 273 (471)
....+..+.++.-+.++.... ..|+ ...|......+...|+.++|...|++. ++.. +.+...|+.+...|...|
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~A--l~l~-P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQA--LALR-PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHcC-CCCHHHHHHHHHHHHHCC
Confidence 334466778888888887542 2222 345667777788889999999999888 5543 345778888999999999
Q ss_pred ChHHHHHHHHhcCC--C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHH
Q 012101 274 RMDLAYKVFWEIDQ--P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEM 350 (471)
Q Consensus 274 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (471)
++++|...|++..+ | +..+|..+..++...|++++|.+.+++..+. .|+..........+...++.++|...|.+
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999988765 3 4567777888888899999999999988875 44433222222223456788999998876
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 012101 351 MKNVYQIEPRFAHYGCMVDLLGRAGLLEE--ARAMVEGM-PM----KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 351 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
.... ..|+...+ .+... ..|+... +.+.+... .. .| ...+|..+...+.+.|++++|...|++..+.
T Consensus 191 ~~~~--~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEK--LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhh--CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5432 23433222 23332 3444433 33222221 11 12 2347888888899999999999999999988
Q ss_pred CCCCC-chHHHHHHHH
Q 012101 423 EPWSD-GAYVVLSNIY 437 (471)
Q Consensus 423 ~~~~~-~~~~~l~~~~ 437 (471)
+|.+- ..-..+++..
T Consensus 266 ~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 266 NVYNFVEHRYALLELA 281 (296)
T ss_pred CCchHHHHHHHHHHHH
Confidence 86433 2333444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-07 Score=87.77 Aligned_cols=399 Identities=13% Similarity=0.070 Sum_probs=257.4
Q ss_pred CCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc
Q 012101 45 DTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY 122 (471)
Q Consensus 45 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 122 (471)
.++-|+. +|..|--+..+ .|++..+-+.|++.-. -.....|+.+-..|.-.|.-..|+.+++.-......|+..
T Consensus 318 ~~qnd~a-i~d~Lt~al~~---~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 318 KFQNDAA-IFDHLTFALSR---CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred hhcchHH-HHHHHHHHHHH---HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 3456788 99999988888 6778998888887532 2345679999999999999999999998876554334444
Q ss_pred h-HHHHHHHHh-ccCCchHHHHHHHHHHHh--CC--CCCcchHHHHHHHHHhc-----------CChhhHHHHhccCCCC
Q 012101 123 T-LPIVLKASC-QLFALEIGRQLHSLAVRL--GL--ESNEFCESGFISLYSKA-----------GDFEKARKVFDENPER 185 (471)
Q Consensus 123 ~-~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~ 185 (471)
+ +...-..|. +.+..+++..+-.+.+.. +. ......|..+.-+|... ....++.+.+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 3 433344453 356666666666666552 11 12233444444444432 1234566666665433
Q ss_pred ---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHH
Q 012101 186 ---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLML 262 (471)
Q Consensus 186 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 262 (471)
|..+...+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|+.+.+.... +.|. |....
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~-E~~~--N~~l~ 550 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE-EFGD--NHVLM 550 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-Hhhh--hhhhc
Confidence 33333334445677789999999999998886677888888888888899999999999887731 2222 11111
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC-------------------------------CC-HhhHHHHHHHHH---hCCChh
Q 012101 263 NSLIDMYGKCGRMDLAYKVFWEIDQ-------------------------------PN-VSSWTSMIVGYA---ANGLAN 307 (471)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------------~~-~~~~~~li~~~~---~~~~~~ 307 (471)
..-+..-..-++.+++......+.. .+ +.++..+..-.. +.-..+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 1111111223344443332221110 01 112221111111 000111
Q ss_pred HHHHHHHHHHHcCCCC--C------HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 012101 308 EALDCFHYMRESGIRP--N------HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEE 379 (471)
Q Consensus 308 ~a~~~~~~m~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 379 (471)
.. |....+.| + ...+......+.+.+..++|...+.+.... .......|......+...|..++
T Consensus 631 ~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 631 LK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred cc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHH
Confidence 11 11111222 2 123445556678888899999888888643 23344567777788889999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 380 ARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEW--VAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 380 A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
|.+.|... .+.|+ ..+..++...+.+.|+...|.. ++..+.+.+|.++..|..++.++-+.|+.++|.+.|....+
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999888 77885 4588999999999999888888 99999999999999999999999999999999999988765
Q ss_pred CCC
Q 012101 456 RNL 458 (471)
Q Consensus 456 ~~~ 458 (471)
-..
T Consensus 783 Le~ 785 (799)
T KOG4162|consen 783 LEE 785 (799)
T ss_pred hcc
Confidence 543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-06 Score=79.47 Aligned_cols=427 Identities=14% Similarity=0.114 Sum_probs=226.1
Q ss_pred hhHHHHHHhhhchhhhhHHHH----hhhccC-CCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCC-Cc--hhhHH
Q 012101 19 HPLLHRLCKTHTFRKHVTISA----ASSFLD-THEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSY-SA--AFHWN 90 (471)
Q Consensus 19 ~~~l~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~ 90 (471)
-..+.-++.+.+++.+.+..+ .-++.+ ..++..+.|.-+.+..++.-+.+.--....++.....+ +| ...|+
T Consensus 173 eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 173 EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 345666777777766555443 112222 33444558999999888865555444555555554332 33 35799
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC----------------------chHHHHHHHHHH
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFA----------------------LEIGRQLHSLAV 148 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~ 148 (471)
+|.+-|.+.|.+++|.++|++..+. ..+..-|..+.++|++... ++....-|+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999998765 3355556666666654321 112222233322
Q ss_pred HhC-----------CCCCcchHHHHHHHHHhcCChhhHHHHhcc-------CCCCCcc--hHHHHHHHHHcCCChhHHHH
Q 012101 149 RLG-----------LESNEFCESGFISLYSKAGDFEKARKVFDE-------NPERKLG--SWNAIIAGLSQDGRAKEAID 208 (471)
Q Consensus 149 ~~~-----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-------~~~~~~~--~~~~li~~~~~~~~~~~a~~ 208 (471)
..+ -+.++..|..-+..+ .|+..+-...|.+ ...++.. .|..+.+.|-..|+.+.|..
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 211 011222222222211 2333333333322 1222222 58888888999999999999
Q ss_pred HHHHHHHCCCCCC---HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcC---------CCC------ChhHHHHHHHHHH
Q 012101 209 MFIGLKKCGFEPD---DVTMVSVTSACGSLGDLELALQVHKYVFQVKSK---------QKS------DTLMLNSLIDMYG 270 (471)
Q Consensus 209 ~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~------~~~~~~~l~~~~~ 270 (471)
+|++..+-..+.- ..+|......=.+..+++.|.++.+.......+ .++ +..+|...++.--
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 9988876543322 234444444445667788888877765211111 111 2334555666666
Q ss_pred hcCChHHHHHHHHhcCCCCHhhHHHHHH---HHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcc---CCcHHH
Q 012101 271 KCGRMDLAYKVFWEIDQPNVSSWTSMIV---GYAANGLANEALDCFHYMRESGIRPNHV-TFVGVLSACVH---GGKVQE 343 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~---~~~~~~ 343 (471)
..|-++....+|+++.+.-+.|-..+++ .+-.+.-++++.++|++-...=..|+.. .|+..+.-+.+ ....+.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 6778888888888876522222222221 1223344566666665433332234432 33333332221 235677
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 012101 344 GKHFFEMMKNVYQIEPRFAHYGCMVDLL----GRAGLLEEARAMVEGM--PMKANV--VIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 344 a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m--~~~p~~--~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
|..+|++..+ |.+|... ..+.-.| .+.|....|.+++++. ++++.. ..||..|.--...=-+.....+
T Consensus 569 aRdLFEqaL~--~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 569 ARDLFEQALD--GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHh--cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 7777777765 4444322 2222222 2456666777777776 444322 3566665444333334444555
Q ss_pred HHHHHhcCCCCCc--hHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 416 AKHLQELEPWSDG--AYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 416 ~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
++++.+.-|++.. ...-..+.-.+.|..+.|..++.--
T Consensus 645 YekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 645 YEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 5555554333221 2233444455566666666665443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.7e-08 Score=91.84 Aligned_cols=148 Identities=12% Similarity=0.089 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhc-------------CCCCChhHH--HHHHHHHH
Q 012101 308 EALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVY-------------QIEPRFAHY--GCMVDLLG 372 (471)
Q Consensus 308 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p~~~~~--~~li~~~~ 372 (471)
.+..++..+..+|+++ +|+.|-..|......+-..+++....... .-.|+...| ..+...|-
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4556667777788665 45555555665555555555655553321 113444334 55677888
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 012101 373 RAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
..|++++|++++++. ...|+ +..|..-.+.+-+.|++.+|.+.++.+.+++..+...-+-.+..+.++|++++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999987 77776 4578888889999999999999999999999877766667788889999999999999
Q ss_pred HHhhcCCC
Q 012101 451 AVMKHRNL 458 (471)
Q Consensus 451 ~~m~~~~~ 458 (471)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-06 Score=80.24 Aligned_cols=389 Identities=11% Similarity=0.063 Sum_probs=201.2
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhccc----CCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHML----HSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVL 128 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 128 (471)
+|-.-+....+ .|++...+..|++. |...-...|...+......|-++.++.++++..+- ++..-.--|
T Consensus 104 Iwl~Ylq~l~~---Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 104 IWLDYLQFLIK---QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred HHHHHHHHHHh---cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 44444444444 44455555555432 22222234555666666666666666666666542 222244555
Q ss_pred HHHhccCCchHHHHHHHHHHHhC------CCCCcchHHHHHHHHHhcCCh---hhHHHHhccCCCC--Cc--chHHHHHH
Q 012101 129 KASCQLFALEIGRQLHSLAVRLG------LESNEFCESGFISLYSKAGDF---EKARKVFDENPER--KL--GSWNAIIA 195 (471)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~--~~--~~~~~li~ 195 (471)
..+++.+++++|.+.+...+... -+.+...|.-+.+..++.-+. -....+++.+..+ |- ..|++|..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 55666666666666666554321 133334455555544443322 2234444444332 11 26888888
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCC----------------------HHHHHHHHHHHHHhhc
Q 012101 196 GLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGD----------------------LELALQVHKYVFQVKS 253 (471)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~----------------------~~~a~~~~~~~~~~~~ 253 (471)
.|.+.|.+++|.++|++.... ..+...|..+.++|+.-.. ++....-|+.+ ...
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l--m~r 332 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL--MNR 332 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH--Hhc
Confidence 888888888888888887765 3444445555555433211 11122222222 111
Q ss_pred C-----------CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---------CCHhhHHHHHHHHHhCCChhHHHHHH
Q 012101 254 K-----------QKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---------PNVSSWTSMIVGYAANGLANEALDCF 313 (471)
Q Consensus 254 ~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~ 313 (471)
. .+.++..|..-+. +..|+..+-...|.+..+ .-...|..+.+.|-..|+.+.|..+|
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 0111112221111 122444444444444332 11245667777777888888888888
Q ss_pred HHHHHcCCCCC---HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-----------------ChhHHHHHHHHHHh
Q 012101 314 HYMRESGIRPN---HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-----------------RFAHYGCMVDLLGR 373 (471)
Q Consensus 314 ~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-----------------~~~~~~~li~~~~~ 373 (471)
++..+...+-- ..+|..-...=.+..+++.|.++++..... .-.| +...|...++.-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 77665432211 123333333334556777777777776532 1111 12345566666667
Q ss_pred cCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--chHHHHHHHHHc---CCChHH
Q 012101 374 AGLLEEARAMVEGM---PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD--GAYVVLSNIYAS---RGLWEE 445 (471)
Q Consensus 374 ~g~~~~A~~~~~~m---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~---~g~~~~ 445 (471)
.|-++....+++++ .+. ++.........+-.+.-++++.+++++-..+.+.+. ..|+..+..+.+ .-..+.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 77777777777777 222 222222222233455567788888888777775443 255555544432 236888
Q ss_pred HHHHHHHhhcC
Q 012101 446 VERIRAVMKHR 456 (471)
Q Consensus 446 A~~~~~~m~~~ 456 (471)
|..+|+...+.
T Consensus 569 aRdLFEqaL~~ 579 (835)
T KOG2047|consen 569 ARDLFEQALDG 579 (835)
T ss_pred HHHHHHHHHhc
Confidence 88888888873
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.4e-09 Score=93.46 Aligned_cols=250 Identities=14% Similarity=0.087 Sum_probs=163.1
Q ss_pred HHHHhcCChhhHHHHhccCCCC----CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHH
Q 012101 164 SLYSKAGDFEKARKVFDENPER----KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 239 (471)
+-+.-.|++..+..-.+ .... +......+.+++...|+++.++. ++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445688888885444 2221 22245667788888888776543 333333 677777766666665545555
Q ss_pred HHHHHHHHHHHhhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 012101 240 LALQVHKYVFQVKSKQK-SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRE 318 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 318 (471)
.+..-++.. ...... .+..+.......+...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 84 ~~l~~l~~~--~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 84 SALEELKEL--LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp CHHHHHHHC--CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555444 333323 23333333445667789999999888776 4566667788889999999999999999886
Q ss_pred cCCCCCHHHHHHHHHHhcc----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 012101 319 SGIRPNHVTFVGVLSACVH----GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-N 392 (471)
Q Consensus 319 ~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 392 (471)
. ..| .+...+..++.. .+.+..|..+|+++... ..+++.+.+.+..++...|++++|.+++.+. ...| +
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 4 333 445555555433 34688999999998654 4577788888888899999999999988886 4445 4
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCC
Q 012101 393 VVIWGCLMGACEKFGNV-KMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 393 ~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 427 (471)
..++..++.+....|+. +.+.+++.++....|..+
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 55777778777788877 778888888888887653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-07 Score=80.74 Aligned_cols=310 Identities=15% Similarity=0.049 Sum_probs=153.1
Q ss_pred CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCc--chHHH-
Q 012101 116 GVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKL--GSWNA- 192 (471)
Q Consensus 116 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~- 192 (471)
|+.....-+..++..+.+..++..|.+++..-.+.. +.+....+.|..+|-...++..|...++++...-+ .-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 333334445666666666667777777776655543 33555566666777777777777777776654322 12211
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSA--CGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYG 270 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (471)
-...+.+.+.+..|+++...|.+. |+...-..-+.+ ....+++..+..+.++. -..+ +..+.+.......
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl--p~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL--PSEN---EADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhc--cCCC---ccchhccchheee
Confidence 234455667777777777666542 222221212222 23456666666666554 2111 2333334444455
Q ss_pred hcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHH
Q 012101 271 KCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
+.|+++.|.+-|+...+ .....||..+ +..+.|+++.|+++..++.++|++-.+.. ++ |...+...
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl-gI--------Gm~tegiD 225 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL-GI--------GMTTEGID 225 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc-Cc--------cceeccCc
Confidence 66777777776666554 3334555443 33455666777777777766665421100 00 00000000
Q ss_pred HHHHhHHhcCCCCChhHHHHHH-------HHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012101 347 FFEMMKNVYQIEPRFAHYGCMV-------DLLGRAGLLEEARAMVEGM----PMKANVVIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 347 ~~~~~~~~~~~~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
.+.+ | .|-...-+.++ -.+.+.|+.+.|.+.+-.| ....|++|+..+.-.- ..+++....+-
T Consensus 226 -vrsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~K 298 (459)
T KOG4340|consen 226 -VRSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEK 298 (459)
T ss_pred -hhcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHH
Confidence 0000 0 00000111222 2234556666666666666 1223555554442111 12344444555
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 416 AKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
+.-+.+.+|-++.+|..++-.|++..-++-|..++-
T Consensus 299 LqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 299 LQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 555555566566666666666666666666555543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-07 Score=82.90 Aligned_cols=93 Identities=11% Similarity=-0.087 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMY 269 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (471)
|..+...+...|++++|...|++..+.. +.+...|+.+...+...|+++.|...|+.. ++.. +.+..++..+..++
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A--l~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSV--LELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHH
Confidence 4444444444455555555554444432 223344444444445555555555555444 2221 11233344444444
Q ss_pred HhcCChHHHHHHHHhcC
Q 012101 270 GKCGRMDLAYKVFWEID 286 (471)
Q Consensus 270 ~~~g~~~~A~~~~~~~~ 286 (471)
...|++++|.+.|++..
T Consensus 143 ~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 143 YYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44455555555444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-06 Score=74.64 Aligned_cols=267 Identities=12% Similarity=0.018 Sum_probs=191.0
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHH
Q 012101 185 RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVT-MVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLN 263 (471)
Q Consensus 185 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 263 (471)
.|+.....+...+...|+.++|+..|++.+-. .|+..+ ...-.-.+.+.|+.+....+...+ .... ..+...|-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L--f~~~-~~ta~~wf 304 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYL--FAKV-KYTASHWF 304 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHH--Hhhh-hcchhhhh
Confidence 46667888888999999999999999887754 343322 111122235677777777776666 2211 11222333
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCH---hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQPNV---SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK 340 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 340 (471)
.-+......++++.|..+-++..+.|. ..+-.-...+...|++++|.-.|+...... +-+...|..|+++|...|.
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 334445566788889888888776443 334333456778899999999999887642 3467899999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHHh-cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 012101 341 VQEGKHFFEMMKNVYQIEPRFAHYGCMV-DLLGR-AGLLEEARAMVEGM-PMKANVV-IWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
+.+|.-.-+...+.. .-+..+.+.+. ..+.. -..-++|.++++.. .+.|+.. ..+.+...|...|..+.+..++
T Consensus 384 ~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 999887777665532 34445554442 33332 33457899999988 8888754 7777888899999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 417 KHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
++.....+ +......|++.+...+.+++|.+.|......+++.
T Consensus 462 e~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 462 EKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 99998877 56788999999999999999999999888776654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-08 Score=87.84 Aligned_cols=216 Identities=14% Similarity=0.127 Sum_probs=95.3
Q ss_pred HHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHcCcCCHH
Q 012101 161 GFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEP-DDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~ 239 (471)
-+.+++...|+.+.+..-...-..|.......+...+...++-+.++.-+++....+..+ +..........+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 344555556665555544444444444444334333332233344444443333222221 2222222223345556666
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-HhhHHHHHHHH----HhCCChhHHHHHHH
Q 012101 240 LALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPN-VSSWTSMIVGY----AANGLANEALDCFH 314 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~----~~~~~~~~a~~~~~ 314 (471)
.|.++++ .+ .+.......+..|.+.++++.|.+.++.|.+.+ -.+...+..++ ...+.+.+|..+|+
T Consensus 120 ~AL~~l~------~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~ 191 (290)
T PF04733_consen 120 EALKLLH------KG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFE 191 (290)
T ss_dssp HHHCCCT------TT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHHH------cc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 5555532 11 234444555566666666666666666655411 11122222222 22234566666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 012101 315 YMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL-EEARAMVEGM 387 (471)
Q Consensus 315 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 387 (471)
++.+. ..++..+.+.+..++...|++++|.+++.+..+.. +-+..+...++.+....|+. +.+.+.+..+
T Consensus 192 El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 192 ELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 65443 34555555555556666666666666665554321 22233444455555555555 4455555555
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.7e-08 Score=78.70 Aligned_cols=191 Identities=13% Similarity=-0.027 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCC---CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQP---NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG 338 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 338 (471)
..-|.-.|...|++..|..-+++..+. +..+|..+...|.+.|+.+.|.+-|++..... +-+....|..-.-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 334444555666666666666555542 22355555555556666666666666555432 11233344444444555
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
|++++|.+.|+.........-...+|..+.-+..+.|+.+.|.+.|++. ...|+ ..+.-.+.....+.|++..|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 5666666666655544222222345555555555556666666555555 33332 234445555555555666665555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 417 KHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
+.....++.+.......+..-.+.|+-+.+-++=..+
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5555554434444444444445555555555443333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-06 Score=78.33 Aligned_cols=393 Identities=12% Similarity=0.057 Sum_probs=241.4
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASC 132 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 132 (471)
.|...+..|-..--...+..+..++...+..+++.+.-- -.+...|+-++|.+....-...++. +.+.|+.+.-.+.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkG--L~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKG--LTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhcc--chhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 444555555431001113334444444444444322211 1234568888998888777665433 6677887777778
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHH
Q 012101 133 QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE---RKLGSWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 209 (471)
...++++|.+.|......+ +.|...+.-|.-.-++.|+++........+.+ .....|..+..++.-.|+...|..+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988765 55666777666666777888777666655443 3445788888899999999999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHH------HHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 012101 210 FIGLKKCG-FEPDDVTMVSVTS------ACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVF 282 (471)
Q Consensus 210 ~~~m~~~g-~~p~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 282 (471)
++...+.. -.|+...+.-... .....|.++.|.+.+... . ..+.-....-..-.+.+.+.+++++|..++
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~--e-~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN--E-KQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh--h-hHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99888764 2466665553322 235667777777766544 2 222222333345567788999999999999
Q ss_pred HhcCC--CCHhhHHHHH-HHHHhCCChhHHH-HHHHHHHHcCCCCCHHHH-HHHHHHhccCCcHHHHHHHHHHhHHhcCC
Q 012101 283 WEIDQ--PNVSSWTSMI-VGYAANGLANEAL-DCFHYMRESGIRPNHVTF-VGVLSACVHGGKVQEGKHFFEMMKNVYQI 357 (471)
Q Consensus 283 ~~~~~--~~~~~~~~li-~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (471)
..+.. ||-..|.... .++.+..+.-++. .+|....+. .|....- ..=+.......-.+...+++....++ |+
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~ 319 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GV 319 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CC
Confidence 98876 5555555544 4443333334444 666665554 1211111 11111112222333444555555454 66
Q ss_pred CCChhHHHHHHHHHHhcCCHHH----HHHHHHhC-C------------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 012101 358 EPRFAHYGCMVDLLGRAGLLEE----ARAMVEGM-P------------MKANVVI--WGCLMGACEKFGNVKMGEWVAKH 418 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------------~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 418 (471)
++- +..+...|-.-...+- +..+...+ + -+|.... +..+...+-+.|+++.|+..++.
T Consensus 320 p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 443 3334443332222221 22222222 1 1455554 45567888899999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 419 LQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
..+.-|.-...|..-+.++...|++++|..++++.++-+.
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9998887777888888999999999999999999987654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.1e-07 Score=78.02 Aligned_cols=371 Identities=12% Similarity=0.066 Sum_probs=204.2
Q ss_pred CchHHHHHHhcccCC-----CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHH
Q 012101 68 NQIYAHIIRTHMLHS-----YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQ 142 (471)
Q Consensus 68 ~~~~~a~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 142 (471)
.++..|+.+++.-.. ..++. -.+..++.+.|++++|+..++.+.+.. .|+...+..+.-+..-.|.+.+|.+
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~--lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQ--LWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHH--HHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 556677776653321 12222 235567788999999999999988754 4566666666655566778888887
Q ss_pred HHHHHHHhCCCCCcchHH-HHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 012101 143 LHSLAVRLGLESNEFCES-GFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD 221 (471)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 221 (471)
+-.. .|+....+ .|+..-.+.++-++-..+-+.+.... .---+|.+.....-.+++|+++|.+.... .|+
T Consensus 113 ~~~k------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 113 IAEK------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHhh------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 7665 33444444 44455556677666665555544321 22233444444455789999999999876 566
Q ss_pred HHHHHHHHHH-HcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh--cCChHHHH--HHHHhcCC---------
Q 012101 222 DVTMVSVTSA-CGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK--CGRMDLAY--KVFWEIDQ--------- 287 (471)
Q Consensus 222 ~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~--~~~~~~~~--------- 287 (471)
-...+.-+.. |.+..-++-+.++++-. +.. ++.++...|.......+ +|+..+++ .+-+...+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vY--L~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVY--LRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHH--HHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 6666655544 46777777777777665 332 33334444433332222 22222211 11111110
Q ss_pred -----------------CC-----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cc----CCc
Q 012101 288 -----------------PN-----VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC-VH----GGK 340 (471)
Q Consensus 288 -----------------~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~----~~~ 340 (471)
|. +..--.++--|.+.+++.+|..+.+++.. ..|-......+..+- .+ ...
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 11 11222344557888999999988876543 244444444433321 11 112
Q ss_pred HHHHHHHHHHhHHhcCC------------------------------------CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012101 341 VQEGKHFFEMMKNVYQI------------------------------------EPRFAHYGCMVDLLGRAGLLEEARAMV 384 (471)
Q Consensus 341 ~~~a~~~~~~~~~~~~~------------------------------------~p~~~~~~~li~~~~~~g~~~~A~~~~ 384 (471)
..-|.+.|+..-+. +. ..|...+ .+.++++..|.+.+|+++|
T Consensus 339 lKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 23344444433211 11 1122222 3556777778888888887
Q ss_pred HhC-CCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 385 EGM-PMK-ANVVIWGC-LMGACEKFGNVKMGEWVAKHLQELEPWSD-GAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 385 ~~m-~~~-p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
-+. +.+ .|..+|.+ |.++|.+.+.++.|..++-++.. |... +....+.+-|.+++.+--|.+.|..+...++.
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 777 222 24555544 44667777777777666533211 2111 12334556677777777777777777665553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-06 Score=73.99 Aligned_cols=384 Identities=10% Similarity=0.009 Sum_probs=233.3
Q ss_pred HHHHHHHhcccccCchHHHHHHhcccCCC--CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHH-HHHH
Q 012101 55 ATQLSKCTNLLQLNQIYAHIIRTHMLHSY--SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIV-LKAS 131 (471)
Q Consensus 55 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~ 131 (471)
.+++..+.+ -.++.+|++++....++ .+......+-.+|-...++..|-+.++++-.. .|...-|..- ...+
T Consensus 14 taviy~lI~---d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 14 TAVVYRLIR---DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred HHHHHHHHH---HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 455555566 56688888877655432 36667778888888999999999999998764 4555545432 2345
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcchHHHHH--HHHHhcCChhhHHHHhccCCC-CCcchHHHHHHHHHcCCChhHHHH
Q 012101 132 CQLFALEIGRQLHSLAVRLGLESNEFCESGFI--SLYSKAGDFEKARKVFDENPE-RKLGSWNAIIAGLSQDGRAKEAID 208 (471)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~ 208 (471)
-+.+.+..|..+...|... ++...-..-+ ...-..+|+..+..+.++.+. .+..+.+.......+.|++++|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 5677888888888877542 2221111111 122356889999999999984 556666777777788999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC-------------Chh---------------
Q 012101 209 MFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS-------------DTL--------------- 260 (471)
Q Consensus 209 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~--------------- 260 (471)
-|+...+-|---....|+..+. ..+.++.+.|.+...++ +.+|+.. |+.
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEI--ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEI--IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHH--HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 9988877554444567776554 45678999999999998 7766531 111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC-----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
.+|.-...+.+.|+++.|.+.+-.|.. .|++|...+.-. -..+++.+..+-+.-+.+.+. -...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 122223345678999999999999975 566666554322 123455555555555555543 3467888899999
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHH--
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLG-RAGLLEEARAMVEGMPMKAN--VVIWGCLMGACEKFGNVK-- 410 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~p~--~~~~~~l~~~~~~~~~~~-- 410 (471)
|++.-++.|-.++.+-....-.-.+...|+. ++++. -.-.+++|.+-++.+..... .....+-++--...++-.
T Consensus 321 CKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 9999999988887664321001123344443 33333 34566777666655510000 011111111111222211
Q ss_pred -HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 411 -MGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 411 -~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
.+.+-+++..++-. .....-.+.|.+..++..++++|+.-.+
T Consensus 400 R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 400 RKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 12222222222221 1234455667788899999999887654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.5e-06 Score=77.51 Aligned_cols=197 Identities=11% Similarity=-0.056 Sum_probs=105.7
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcch---HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYT---LPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESG 161 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (471)
....|..+...+...|+.+.+...+....+.. +++... .......+...|+++.|...+++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 34456666666666777777766666655432 122221 1112234566778888888888877653 333333331
Q ss_pred ---HHHHHHhcCChhhHHHHhccCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCc
Q 012101 162 ---FISLYSKAGDFEKARKVFDENPERKLG---SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSL 235 (471)
Q Consensus 162 ---ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 235 (471)
+.......+..+.+.+.++.....+.. ....+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 111112234455555555442222221 23344456666777777777777776653 33445556666666777
Q ss_pred CCHHHHHHHHHHHHHhhcCC-CCCh--hHHHHHHHHHHhcCChHHHHHHHHhcC
Q 012101 236 GDLELALQVHKYVFQVKSKQ-KSDT--LMLNSLIDMYGKCGRMDLAYKVFWEID 286 (471)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (471)
|++++|...++.. ..... .++. ..|..+...+...|++++|..++++..
T Consensus 162 g~~~eA~~~l~~~--l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 162 GRFKEGIAFMESW--RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHhh--hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777777666 33221 1121 223345555666666666666666543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-05 Score=74.32 Aligned_cols=78 Identities=9% Similarity=-0.031 Sum_probs=50.1
Q ss_pred CHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCCCchHHHHHHHHHcCCChH
Q 012101 376 LLEEARAMVEGM-PMKAN--VVIWGCLMGACEKFGNVKMGEWVAK--------HLQELEPWSDGAYVVLSNIYASRGLWE 444 (471)
Q Consensus 376 ~~~~A~~~~~~m-~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~ 444 (471)
.+.+|.+++... .-.|+ ..+.-..++.....|+++.|.+++. .+.+.+. .|.+-..+...|.+.++.+
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~-~P~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH-LPGTVGAIVALYYKIKDND 434 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc-ChhHHHHHHHHHHhccCCc
Confidence 466777777776 33443 3455555666778888888888888 4444443 3456666777777777766
Q ss_pred HHHHHHHHhh
Q 012101 445 EVERIRAVMK 454 (471)
Q Consensus 445 ~A~~~~~~m~ 454 (471)
.|..++.+..
T Consensus 435 ~a~~vl~~Ai 444 (652)
T KOG2376|consen 435 SASAVLDSAI 444 (652)
T ss_pred cHHHHHHHHH
Confidence 6666665553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-06 Score=78.68 Aligned_cols=195 Identities=9% Similarity=-0.040 Sum_probs=102.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHh
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGI-RPNH--VTFVGVLSAC 335 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~ll~~~ 335 (471)
...+...+...|++++|...+++..+ .+...+..+...+...|++++|..++++..+... .|+. ..+..+...+
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 33444556666677777666666554 2344555666666677777777777766655321 1222 2233455566
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCCHHHHHHH---HHhC--C--CCCCHHHHHHHHHHHHh
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHY-G--CMVDLLGRAGLLEEARAM---VEGM--P--MKANVVIWGCLMGACEK 405 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m--~--~~p~~~~~~~l~~~~~~ 405 (471)
...|++++|..++++........+..... + .++.-+...|....+.++ .... . .............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 66777777777777664221111111111 1 122222233322222221 1111 1 01111222345667778
Q ss_pred cCCHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 406 FGNVKMGEWVAKHLQELEPW---------SDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.|+.+.|..+++.+...... ..........++...|++++|.+.+......
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888887653321 1123334555677889999999988877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.3e-06 Score=79.56 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
|......+.+.+..++|...+.+. ++.| ....|......+...|+.++|.+.|.....++|.++.....++.++.+.|
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 344455566666777776555555 4444 34456666666777888888888888888888888888888888988888
Q ss_pred ChHHHHH--HHHHhhcCCCccCCCc
Q 012101 442 LWEEVER--IRAVMKHRNLAKIPAY 464 (471)
Q Consensus 442 ~~~~A~~--~~~~m~~~~~~~~~~~ 464 (471)
+-.-|.. ++..+.+.+......|
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHH
Confidence 7777777 8888887776654443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-06 Score=71.93 Aligned_cols=188 Identities=12% Similarity=0.061 Sum_probs=106.9
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDM 268 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (471)
+...|.-+|.+.|+...|..-+++..+.. +-+..++..+...|.+.|+.+.|.+.|+.. ++.. +-+..+.|...-.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA--lsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKA--LSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHH--HhcC-CCccchhhhhhHH
Confidence 34556667777777777777777776653 334456666666777777777777777766 3332 2244556666666
Q ss_pred HHhcCChHHHHHHHHhcCC-CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHH
Q 012101 269 YGKCGRMDLAYKVFWEIDQ-PN----VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQE 343 (471)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (471)
+|..|++++|...|++... |+ ..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 6666666666666665543 22 2455555555556666666666666655542 1123344445555555566666
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012101 344 GKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAM 383 (471)
Q Consensus 344 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 383 (471)
|...++..... ..++..+.-..|+.-.+.|+-+.+-+.
T Consensus 192 Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 192 ARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 66666555433 225544444444444445554444443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-06 Score=88.55 Aligned_cols=326 Identities=13% Similarity=0.025 Sum_probs=199.4
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC----CCC---c---c--hHHHHHHHHHc
Q 012101 132 CQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP----ERK---L---G--SWNAIIAGLSQ 199 (471)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~---~---~--~~~~li~~~~~ 199 (471)
...|+++.+..+++.+.......+..........+...|+++++..+++... ..+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 3456666666665554211112223333444555667889999888876532 111 1 1 12223345567
Q ss_pred CCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC---ChhHHHHHHHHHHhc
Q 012101 200 DGRAKEAIDMFIGLKKCGFEPDD----VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS---DTLMLNSLIDMYGKC 272 (471)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 272 (471)
.|++++|...+++....-...+. ...+.+...+...|+++.|...+++.......... .......+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999887653111221 23345555667889999999998887322221111 123445567778889
Q ss_pred CChHHHHHHHHhcCC-------CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHc--CCCCC--HHHHHHHHHHhcc
Q 012101 273 GRMDLAYKVFWEIDQ-------PN----VSSWTSMIVGYAANGLANEALDCFHYMRES--GIRPN--HVTFVGVLSACVH 337 (471)
Q Consensus 273 g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~~~~~ 337 (471)
|++++|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999988876543 11 223444556677789999999998887543 11122 2334445566778
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHhC-CCC-CCH----HHHHHHHHHHHhc
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHY-----GCMVDLLGRAGLLEEARAMVEGM-PMK-ANV----VIWGCLMGACEKF 406 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~----~~~~~l~~~~~~~ 406 (471)
.|+.+.|...+...............+ ...+..+...|+.+.|.+++... ... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 899999999888875431111111111 11224455689999999998776 211 111 1244566778899
Q ss_pred CCHHHHHHHHHHHHhcC----CC--CCchHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 407 GNVKMGEWVAKHLQELE----PW--SDGAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 407 ~~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
|+.++|...++++.... .. ...+...+..+|.+.|+.++|.+.+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999887642 11 11255677788899999999999988886543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.5e-06 Score=70.82 Aligned_cols=290 Identities=12% Similarity=0.065 Sum_probs=164.7
Q ss_pred HHHHHHhcCChhhHHHHhccCCCCCcchHHHHH---HHHHcCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHcCcCC
Q 012101 162 FISLYSKAGDFEKARKVFDENPERKLGSWNAII---AGLSQDGRAKEAIDMFIGLKKCGFEPDDVTM-VSVTSACGSLGD 237 (471)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~ 237 (471)
|-..+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+.+..+. +||-..- ..-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 334445556666666666666666665555443 3556666666666666666554 5553221 122233456667
Q ss_pred HHHHHHHHHHHHHhhcCCCC--Chh------------HHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHH
Q 012101 238 LELALQVHKYVFQVKSKQKS--DTL------------MLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGY 300 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~--~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 300 (471)
+++|..-|+.+ ++....- ... .....+..+...|+...|+.....+.+ .|...|..-..+|
T Consensus 122 le~A~~DF~~v--l~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 122 LEQAEADFDQV--LQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHH--HhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 77777666666 4333211 111 111223345556777777777666654 5666666777777
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHH----HHH---H-----
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHY----GCM---V----- 368 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~----~~l---i----- 368 (471)
...|.+..|+.=++...+.. .-+..++-.+-..+...|+.+.++...++-. .+.|+-..+ ..+ +
T Consensus 200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 77777777776666555442 2233344444455556666666666555554 345553221 111 1
Q ss_pred -HHHHhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 369 -DLLGRAGLLEEARAMVEGM-PMKANV-----VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 369 -~~~~~~g~~~~A~~~~~~m-~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
....+.+++.++++..+.. ...|.. ..+..+-.++...|++.+|++...+..+..|++..++.--.++|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 1223445555555555544 334431 233444556667777788888888877777777777777777777777
Q ss_pred ChHHHHHHHHHhhcCCCc
Q 012101 442 LWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~~~~ 459 (471)
++|+|+.-|+...+.+..
T Consensus 356 ~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 777777777777665543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-05 Score=74.55 Aligned_cols=364 Identities=13% Similarity=0.124 Sum_probs=229.8
Q ss_pred hhhccCCCCChHHHHHHHHH--HHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHC-C
Q 012101 40 ASSFLDTHEDPAKIVATQLS--KCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRA-G 116 (471)
Q Consensus 40 ~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 116 (471)
+..++|++.....+-.++++ .|.. .|+++.|.+-.+.+. +-..|..+.+.|++..+.+-|.-.+-.|... |
T Consensus 715 LrdFvgle~Cd~~TRkaml~FSfyvt---iG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg 788 (1416)
T KOG3617|consen 715 LRDFVGLENCDESTRKAMLDFSFYVT---IGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG 788 (1416)
T ss_pred HHHhcCccccCHHHHHhhhceeEEEE---eccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh
Confidence 45667776554325556653 4666 788899988777775 3478999999999999999998888887542 1
Q ss_pred C--------CCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCc-
Q 012101 117 V--------LPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKL- 187 (471)
Q Consensus 117 ~--------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~- 187 (471)
. .|+ .+=..+.-.....|.+++|+.+|++..+. ..|=..|-..|.+++|.++-+.-..-..
T Consensus 789 aRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr 858 (1416)
T KOG3617|consen 789 ARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR 858 (1416)
T ss_pred HHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh
Confidence 1 122 33333334456788999999999998874 3344677788999999998754332222
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHC----------C---------CCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 188 GSWNAIIAGLSQDGRAKEAIDMFIGLKKC----------G---------FEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 188 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------g---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
.||..-...+-..++.+.|++.|++-... . -..|...|.....-.-..|+.+.|..+|...
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 16666666666777888888877653211 0 1224444555555555667777777777655
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 012101 249 FQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTF 328 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 328 (471)
. -|-+++...|-.|+.++|-++-++- .|......+.+.|-+.|++.+|..+|.+... |
T Consensus 939 --~---------D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------f 996 (1416)
T KOG3617|consen 939 --K---------DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------F 996 (1416)
T ss_pred --h---------hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------H
Confidence 1 2455666667777888777776543 4666777788889999999999999887653 3
Q ss_pred HHHHHHhcc---------------CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC------
Q 012101 329 VGVLSACVH---------------GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM------ 387 (471)
Q Consensus 329 ~~ll~~~~~---------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------ 387 (471)
...|+.|-. ..+.-.|-.+|++. |.. +...+..|-+.|.+.+|+++--+-
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence 333333222 22333344445444 211 223455677888888887752221
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------cCCCC----C-----ch
Q 012101 388 -------PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQE----------------------LEPWS----D-----GA 429 (471)
Q Consensus 388 -------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------~~~~~----~-----~~ 429 (471)
.-..|+...+.-...+....++++|..++-...+ +.|.- + ..
T Consensus 1068 ~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1068 DLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHH
Confidence 1223666777777777777777777666544432 11110 0 24
Q ss_pred HHHHHHHHHcCCChHHHHHHH
Q 012101 430 YVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~ 450 (471)
...+++.|.++|.|..|-+-|
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHH
Confidence 667888888999887766544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-05 Score=82.00 Aligned_cols=358 Identities=10% Similarity=-0.041 Sum_probs=218.3
Q ss_pred cCchHHHHHHhcccCCCCchh-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHH
Q 012101 67 LNQIYAHIIRTHMLHSYSAAF-HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHS 145 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (471)
.|++.+|.......+..+... ............|+++.+...++.+.......+..........+...|+++++...+.
T Consensus 354 ~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~ 433 (903)
T PRK04841 354 QGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLA 433 (903)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHH
Confidence 455566655554444321100 1111223345567777777777665322112223333344445567889999999988
Q ss_pred HHHHhCCC------CCc--chHHHHHHHHHhcCChhhHHHHhccCC----CCCc----chHHHHHHHHHcCCChhHHHHH
Q 012101 146 LAVRLGLE------SNE--FCESGFISLYSKAGDFEKARKVFDENP----ERKL----GSWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 146 ~~~~~~~~------~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~ 209 (471)
...+.--. +.. .....+...+...|++++|...+++.. ..+. ...+.+...+...|++++|...
T Consensus 434 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~ 513 (903)
T PRK04841 434 RAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAM 513 (903)
T ss_pred HHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87653111 111 111223345567899999998887643 2222 2456666777889999999999
Q ss_pred HHHHHHCCC---CC--CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc--CCC--C-ChhHHHHHHHHHHhcCChHHHH
Q 012101 210 FIGLKKCGF---EP--DDVTMVSVTSACGSLGDLELALQVHKYVFQVKS--KQK--S-DTLMLNSLIDMYGKCGRMDLAY 279 (471)
Q Consensus 210 ~~~m~~~g~---~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~-~~~~~~~l~~~~~~~g~~~~A~ 279 (471)
+++.....- .+ ...++..+...+...|+++.|...+++...... +.. + ....+..+...+...|++++|.
T Consensus 514 ~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 593 (903)
T PRK04841 514 MQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE 593 (903)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 988764311 11 123445566677889999999999887733221 111 1 2233455666777889999999
Q ss_pred HHHHhcCC------C--CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHhccCCcHHHHH
Q 012101 280 KVFWEIDQ------P--NVSSWTSMIVGYAANGLANEALDCFHYMRESGIR-PNHVTF-----VGVLSACVHGGKVQEGK 345 (471)
Q Consensus 280 ~~~~~~~~------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~-----~~ll~~~~~~~~~~~a~ 345 (471)
..+.+... + ....+..+...+...|+++.|.+.+.+....... .....+ ...+..+...|+.+.|.
T Consensus 594 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 673 (903)
T PRK04841 594 QCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAA 673 (903)
T ss_pred HHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHH
Confidence 88887643 1 1234444666778899999999999887542111 111111 11123345578999999
Q ss_pred HHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 012101 346 HFFEMMKNVYQIEPR---FAHYGCMVDLLGRAGLLEEARAMVEGM-------PMKAN-VVIWGCLMGACEKFGNVKMGEW 414 (471)
Q Consensus 346 ~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 414 (471)
+.+...... ..... ...+..+..++...|++++|...+++. +..++ ..+...+..++.+.|+.++|..
T Consensus 674 ~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 674 NWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998776432 11111 111345667888999999999998887 32222 2466677788999999999999
Q ss_pred HHHHHHhcCCC
Q 012101 415 VAKHLQELEPW 425 (471)
Q Consensus 415 ~~~~~~~~~~~ 425 (471)
.+.+..+....
T Consensus 753 ~L~~Al~la~~ 763 (903)
T PRK04841 753 VLLEALKLANR 763 (903)
T ss_pred HHHHHHHHhCc
Confidence 99999887643
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.5e-07 Score=75.62 Aligned_cols=122 Identities=7% Similarity=0.008 Sum_probs=78.2
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGAC-EKFGN--VKMG 412 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~-~~~~~--~~~a 412 (471)
.++.+++...++...+. -+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666656555443 1345566667777777777777777777766 4445 444555555553 45555 4777
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 413 EWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
.+++++..+.+|.++..+..++..+.+.|++++|...|+++.+......
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 7777777777777777777777777777777777777777766554433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-07 Score=84.37 Aligned_cols=218 Identities=14% Similarity=0.070 Sum_probs=169.8
Q ss_pred HcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhH
Q 012101 232 CGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANE 308 (471)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 308 (471)
+.+.|++..|.-.|+.. ++.. +-+...|-.|.-....+++-..|+..+.+..+ .|....-.|.-.|.+.|.-..
T Consensus 295 lm~nG~L~~A~LafEAA--Vkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAA--VKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHH--HhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 35778888888888887 5544 34677888888888888888888888887765 455677777788888888889
Q ss_pred HHHHHHHHHHcCCC--------CCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 309 ALDCFHYMRESGIR--------PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 309 a~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
|++.++.-.....+ ++...-.. ..+..........++|-++....+..+|..+...|.-.|--.|.+++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999887654211 01000000 122333445566777777767667667888888999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 381 RAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 381 ~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
...|+.. .++| |...||.|...++...+.++|+..+.+++++.|.-......|+..|...|.+++|.+.|=...
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999998 7888 567999999999999999999999999999999888889999999999999999999776554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-06 Score=88.83 Aligned_cols=226 Identities=13% Similarity=0.138 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcC-CC---CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC-HhhHH
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSK-QK---SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PN-VSSWT 294 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~ 294 (471)
+...|...|......++.++|.++.++. ++.- +. --..+|.++++.-..-|.-+...++|++..+ -| ...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerA--L~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERA--LKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHH--hhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 3445556666666666666666666665 3221 10 0123455555555555656666666666655 22 34556
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA 374 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 374 (471)
.|...|.+.+.+++|.++++.|.++ ..-....|...+..+.+.++.+.|..++.++.+...-.--.......+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 6666666666666666666666654 223445566666666666666666666666654311111123333444445566
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--c-hHHHHHHHHHcCCChHHHHHH
Q 012101 375 GLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD--G-AYVVLSNIYASRGLWEEVERI 449 (471)
Q Consensus 375 g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~~A~~~ 449 (471)
|+.+.+..+|+.. .-.| -...|+.++..-.++|+.+.+..+|+++..++.... . .|.-.++.--+.|+-+.++.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 6666666666665 2222 344666666666666666666666666666553221 1 233333333344554444444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-06 Score=76.04 Aligned_cols=183 Identities=14% Similarity=-0.022 Sum_probs=122.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-H---hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHH
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN-V---SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH--VTF 328 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~ 328 (471)
.....+-.+...+.+.|++++|...|+++.+ |+ . .++..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455667777788888999998888887764 32 1 35666778888888899999988888875322111 133
Q ss_pred HHHHHHhccC--------CcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 012101 329 VGVLSACVHG--------GKVQEGKHFFEMMKNVYQIEPRFA-HYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCL 399 (471)
Q Consensus 329 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 399 (471)
..+..++... |+.+.|.+.++.+... .|+.. .+..+..... ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 3334444433 6778888888888655 34432 2222211100 00000 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 400 MGACEKFGNVKMGEWVAKHLQELEPWSD---GAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
...+.+.|++.+|...++++.+..|.++ ..+..++.+|.+.|++++|.+.++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5678899999999999999998876543 578899999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-06 Score=78.61 Aligned_cols=358 Identities=12% Similarity=0.036 Sum_probs=217.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC-cchHHHHHHHHHhcCCh
Q 012101 94 RLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESN-EFCESGFISLYSKAGDF 172 (471)
Q Consensus 94 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~ 172 (471)
.+.+..|+++.|+.+|-+..... ++|...|..-..++++.|++++|.+=-.+-++. .|+ ..-|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567899999999999988765 347788888889999999999988776666654 455 35688888888888999
Q ss_pred hhHHHHhccCCCCCcc---hHHHHHHHHHcCCChhHHHHHH------HHHHHC---CCCCCHHHHHHHHHHHcCcC----
Q 012101 173 EKARKVFDENPERKLG---SWNAIIAGLSQDGRAKEAIDMF------IGLKKC---GFEPDDVTMVSVTSACGSLG---- 236 (471)
Q Consensus 173 ~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~------~~m~~~---g~~p~~~~~~~li~~~~~~~---- 236 (471)
++|..-|.+-.+.+.. .++-+..++... . .+.+.| ..+... .......+|..++...-+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999887655443 566666666211 0 011111 111000 00011122333333221110
Q ss_pred ---CHHHHHHHHHHHHH------h-------hcCCCC------------C----------hhHHHHHHHHHHhcCChHHH
Q 012101 237 ---DLELALQVHKYVFQ------V-------KSKQKS------------D----------TLMLNSLIDMYGKCGRMDLA 278 (471)
Q Consensus 237 ---~~~~a~~~~~~~~~------~-------~~~~~~------------~----------~~~~~~l~~~~~~~g~~~~A 278 (471)
+.+...+....+.. . .....| + ..-...+.++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 01111111111000 0 000011 0 01233466666677777777
Q ss_pred HHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH-------HHHHHhccCCcHHHHHHHHH
Q 012101 279 YKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFV-------GVLSACVHGGKVQEGKHFFE 349 (471)
Q Consensus 279 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~~~~~~~a~~~~~ 349 (471)
.+-+....+ .++.-++....+|...|.+.++...-....+.|.. ....|+ .+-.+|.+.++++.|...|.
T Consensus 244 ~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 244 IQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777776654 33444566667777777777766666665555421 111222 22235566677888888887
Q ss_pred HhHHhcCCCCChhH-------------------------HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012101 350 MMKNVYQIEPRFAH-------------------------YGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGA 402 (471)
Q Consensus 350 ~~~~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~ 402 (471)
+....+. .|+... ...=...+.+.|++..|...+.++ ...| |...|..-.-+
T Consensus 323 kaLte~R-t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHR-TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAAC 401 (539)
T ss_pred HHhhhhc-CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 7665432 232111 011134456778888888888887 4445 56678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
|.+.|.+..|..-.+...+++|.....|..-+.++....+|++|.+.|.+..+.+..
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 888888888888888888888877777777777777778888888888888777654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.2e-06 Score=83.08 Aligned_cols=202 Identities=13% Similarity=0.111 Sum_probs=167.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 256 KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 256 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
+-....|-..|......++.++|++++++... .-...|.++++.-...|.-+...++|+++.+. --.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 33466788889999999999999999988764 23457888888777788888889999998875 222456
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA---NVVIWGCLMGAC 403 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~l~~~~ 403 (471)
|..|...|.+.+..++|.++++.|.++++ -....|...++.+.+..+-+.|..++.+. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888999999999999999999998876 56678999999999999999999999987 2223 455666777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
.+.||.+++..+|+......|.-...|+.+++.-.+.|+.+.++.+|+++...++.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 8999999999999999999988888999999999999999999999999988877543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.0003 Score=65.22 Aligned_cols=150 Identities=5% Similarity=-0.032 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 012101 306 ANEALDCFHYMRESG-IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAM 383 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 383 (471)
.+.....++++...- +.|+ .+|...+..-.+...++.|+.+|.+..+. +..+ .+.++++++..|| .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 555666666665432 3333 45777777777788888899999998776 4444 7777788887665 4677888888
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 384 VEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPW---SDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 384 ~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
|+-- ..-+|. ..-...+..+...++-..+..+|++....... ...+|..++..-..-|+...+.++=+++...-.
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 8865 333444 44456777788888888899999988876321 225788888888888999988888887766543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-08 Score=56.81 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=21.0
Q ss_pred CCCCCcchHHHHHHHHHhcCChhhHHHHhccC
Q 012101 151 GLESNEFCESGFISLYSKAGDFEKARKVFDEN 182 (471)
Q Consensus 151 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 182 (471)
|++||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.7e-05 Score=72.83 Aligned_cols=254 Identities=14% Similarity=0.166 Sum_probs=129.5
Q ss_pred CChhhHHHHhccCCCCCcch--HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHH
Q 012101 170 GDFEKARKVFDENPERKLGS--WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKY 247 (471)
Q Consensus 170 g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 247 (471)
..+.+|..+++.+...++.+ |..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|+|+.|.++-++
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHH
Confidence 34444444444444443332 4444455555555555555553321 233344555555555555555443
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 248 VFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
. .|.......|-+-..-.-+.|++.+|+++|-.+..|+.. |..|-+.|..+..+++..+-.... -..|
T Consensus 817 ~----~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d~---l~dt 884 (1636)
T KOG3616|consen 817 C----HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGDH---LHDT 884 (1636)
T ss_pred h----cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChhh---hhHH
Confidence 3 233333444444444455555566666655555555532 455666666666666655432211 1234
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH-------
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLM------- 400 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~------- 400 (471)
-..+..-+-..|+...|+..|-+.. -|.+-+++|...+.+++|.++-+.-|-. |..-....+
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~-n~~k~v~flwaksigg 953 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGA-NAEKHVAFLWAKSIGG 953 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccc-cHHHHHHHHHHHhhCc
Confidence 4455555666788888877776652 2556667777777777777776654211 111111111
Q ss_pred -----------------HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 401 -----------------GACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 401 -----------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
.-.+..+.++-|..+-+-..+. ..+.....+...+...|++++|-+-+-+..+.+
T Consensus 954 daavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 954 DAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 1122233333333333322221 123455566667778899999877666555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-08 Score=55.24 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=20.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 356 QIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 356 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4e-06 Score=79.90 Aligned_cols=212 Identities=11% Similarity=0.033 Sum_probs=139.7
Q ss_pred HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCC
Q 012101 227 SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANG 304 (471)
Q Consensus 227 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 304 (471)
.+...+.+.|-...|..+++.. ..|.-++.+|+..|+..+|..+..+..+ ||+..|..+....-...
T Consensus 403 ~laell~slGitksAl~I~Erl-----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL-----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH-----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 3444445555555555555544 1345556666666666666665544332 55555555555554444
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMV 384 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 384 (471)
-+++|.++.+..... .-..+.......++++++.+.|+.-.+...+ ...+|-.+..+..+.++++.|.+.|
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHH
Confidence 555666555543221 0011111122356677777777665544322 3346666777778889999999988
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 385 EGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 385 ~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
... ...|| ...||.+-.+|.+.++-.+|...+++..+-+..+..+|...+-...+-|.+++|.+.+.++.....
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 887 66775 468999999999999999999999999988877777888888888899999999999988876544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.5e-05 Score=65.53 Aligned_cols=205 Identities=13% Similarity=0.056 Sum_probs=101.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 012101 194 IAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG 273 (471)
Q Consensus 194 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 273 (471)
+..+...|+...|+.....+.+-. +.|...|..-..+|...|++..|..-++.. .+.... +....--+-..+...|
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~a--skLs~D-nTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQA--SKLSQD-NTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHH--Hhcccc-chHHHHHHHHHHHhhh
Confidence 344555667777777777666542 456666666666677777777776666555 332222 2333334555566666
Q ss_pred ChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHh
Q 012101 274 RMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMM 351 (471)
Q Consensus 274 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (471)
+.+.+....++..+ ||...+-.. -....+..+.+..|.+ ....+++.++.+-.+..
T Consensus 238 d~~~sL~~iRECLKldpdHK~Cf~~------YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~v 295 (504)
T KOG0624|consen 238 DAENSLKEIRECLKLDPDHKLCFPF------YKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKV 295 (504)
T ss_pred hHHHHHHHHHHHHccCcchhhHHHH------HHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHH
Confidence 66666666555544 332211110 0001111111111111 12234444444444444
Q ss_pred HHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 352 KNVYQIEPR-----FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 352 ~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
.+. .|. ...+..+-+++...|++.+|.+...+. .+.|| ..++.-=..+|.-...++.|+.-|+.+.+.++
T Consensus 296 lk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 296 LKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred Hhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 322 222 112334444555556666666655555 45554 44555555566666666666666666666555
Q ss_pred CCC
Q 012101 425 WSD 427 (471)
Q Consensus 425 ~~~ 427 (471)
.+.
T Consensus 373 sn~ 375 (504)
T KOG0624|consen 373 SNT 375 (504)
T ss_pred ccH
Confidence 443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-05 Score=70.56 Aligned_cols=181 Identities=14% Similarity=0.031 Sum_probs=125.1
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHh----h
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK--SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVS----S 292 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 292 (471)
....+......+...|+++.|...++.+ ...... .....+..+..+|.+.|++++|...++++.+ |+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEAL--ESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4566778888889999999999999998 443321 1234677788999999999999999999875 3222 3
Q ss_pred HHHHHHHHHhC--------CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhH
Q 012101 293 WTSMIVGYAAN--------GLANEALDCFHYMRESGIRPNHV-TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAH 363 (471)
Q Consensus 293 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 363 (471)
+..+..++.+. |++++|.+.++++... .|+.. ....+... .. ..... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---------~~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---------LRNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---------HHHHH-H--------HH
Confidence 55555556554 7789999999998876 44432 22111111 00 00001 0 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PM---KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
...+...|.+.|++++|...++.. .. .| ....+..+..++.+.|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 124566788999999999998887 22 23 346888899999999999999999888876554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00029 Score=70.06 Aligned_cols=213 Identities=12% Similarity=0.117 Sum_probs=129.4
Q ss_pred CCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch
Q 012101 81 HSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAG--VLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFC 158 (471)
Q Consensus 81 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (471)
++..|...-..-+.++...+-+.+-+++++++.-.. ..-+...-+.++-...+. +...+.+..+++-..+ .|+
T Consensus 979 ~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~--- 1053 (1666)
T KOG0985|consen 979 PETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD--- 1053 (1666)
T ss_pred CccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh---
Confidence 334455556667788888888888888888876432 111222234444444443 4455555555544322 111
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCC-------------------------CCcchHHHHHHHHHcCCChhHHHHHHHHH
Q 012101 159 ESGFISLYSKAGDFEKARKVFDENPE-------------------------RKLGSWNAIIAGLSQDGRAKEAIDMFIGL 213 (471)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m 213 (471)
+.......+-+++|..+|++..- .....|..+..+-.+.|...+|++-|-+.
T Consensus 1054 ---ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1054 ---IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred ---HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 12223333444444444443210 12346888888989999999988877443
Q ss_pred HHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhH
Q 012101 214 KKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSW 293 (471)
Q Consensus 214 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 293 (471)
-|+..|.-++..+.+.|.+++-.+++... .+..-.|. +-+.|+-+|++.+++.+.+.+.. -||....
T Consensus 1131 ------dDps~y~eVi~~a~~~~~~edLv~yL~Ma--Rkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ------DDPSNYLEVIDVASRTGKYEDLVKYLLMA--RKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANI 1197 (1666)
T ss_pred ------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH--HHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhH
Confidence 35677889999999999999998888777 55554444 35678889999998888776542 3455444
Q ss_pred HHHHHHHHhCCChhHHHHHHH
Q 012101 294 TSMIVGYAANGLANEALDCFH 314 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~ 314 (471)
..+..-|...|.++.|.-+|.
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHH
Confidence 555555555555555555444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.1e-05 Score=76.54 Aligned_cols=398 Identities=12% Similarity=-0.003 Sum_probs=217.0
Q ss_pred hhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHH
Q 012101 33 KHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYI 110 (471)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 110 (471)
....++++.+.+.+.++..+.|..|-..|.. ..+...|.+-|+..-+ ..+..++......|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd---~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRD---SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3456778888888999988899999999988 5577888888876543 3567789999999999999999998844
Q ss_pred HHHHCC-CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcch
Q 012101 111 FMSRAG-VLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGS 189 (471)
Q Consensus 111 ~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 189 (471)
.--+.. ...-...|...--.+.+.++...+..-|+...+.. |.|...|..|..+|.++|.+..|.++|++...-++..
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 433321 11112223333345677888888888888888755 6678899999999999999999999998876555443
Q ss_pred HHH---HHHHHHcCCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHcCcCCH-------HHHHHHHHHHHHhhc
Q 012101 190 WNA---IIAGLSQDGRAKEAIDMFIGLKKC------GFEPDDVTMVSVTSACGSLGDL-------ELALQVHKYVFQVKS 253 (471)
Q Consensus 190 ~~~---li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~~~~-------~~a~~~~~~~~~~~~ 253 (471)
+.. ....-+..|.+++|+..+...... +...-..++..+...+.-.|-. +++.+.|... ...
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~--l~h 707 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS--LIH 707 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH--HHH
Confidence 221 222345678899999888776543 1111122333333322222222 2233333322 222
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCH---hhHHHHHHHHHhCCCh---h---HHHHHHHHHHHcCCCCC
Q 012101 254 KQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNV---SSWTSMIVGYAANGLA---N---EALDCFHYMRESGIRPN 324 (471)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~---~---~a~~~~~~m~~~~~~p~ 324 (471)
....+...|-.+.++ -.+|-... |+. ....++..-.-+.+.. | -+.+.+-.-... ..+
T Consensus 708 ~~~~~~~~Wi~asda----------c~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~ 774 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDA----------CYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIH 774 (1238)
T ss_pred hhhhhHHHHHHHhHH----------HHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhc
Confidence 222233333333222 22232222 221 1111111111111111 1 011111110100 111
Q ss_pred HHHHHHHHHHhcc-------C-CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHH
Q 012101 325 HVTFVGVLSACVH-------G-GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVV 394 (471)
Q Consensus 325 ~~~~~~ll~~~~~-------~-~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~ 394 (471)
..+|..+...|.+ . .+...|...++...+. ..-+..+|+.|.-. ...|.+.-|..-|-.- ..+.+..
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh
Confidence 2222222221111 1 1223555555555432 12344455544433 4445555544444333 2222455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
+|..+...|.+..|++.|...|.+.+.+.|.+...|..........|+.-++..+|..
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 6666666667777777777777777777776666666655555566666666665554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00027 Score=70.21 Aligned_cols=165 Identities=12% Similarity=0.211 Sum_probs=122.2
Q ss_pred HHHHhcCChHHHHHHHHhcCC-------------------------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 012101 267 DMYGKCGRMDLAYKVFWEIDQ-------------------------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGI 321 (471)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 321 (471)
.....++-+++|..+|++... ..+..|..+..+-.+.|...+|.+-|-+.
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 334455667778877776531 34567888888888899988888766542
Q ss_pred CCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012101 322 RPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMG 401 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~ 401 (471)
-|...|..++..+.+.|.+++-.+++...+++ .-+|...+ .||-+|++.++..+.++++. .||..-...+..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhH
Confidence 36678999999999999999999999988765 55666554 79999999999998877664 467777778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 402 ACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 402 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
-|...|.++.|.-++... +.|..|...+...|++..|...-++
T Consensus 1203 rcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888888887777533 3366666666666666666544433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-06 Score=68.89 Aligned_cols=91 Identities=8% Similarity=-0.168 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWE 444 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 444 (471)
....+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++.+.+|.++..+..++.++...|+++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 344444455555555555544 3333 33444445555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhcCC
Q 012101 445 EVERIRAVMKHRN 457 (471)
Q Consensus 445 ~A~~~~~~m~~~~ 457 (471)
+|.+.|+...+..
T Consensus 110 eAi~~~~~Al~~~ 122 (144)
T PRK15359 110 LAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHhC
Confidence 5555555544433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00022 Score=66.11 Aligned_cols=209 Identities=12% Similarity=0.051 Sum_probs=142.8
Q ss_pred HHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC---HhhHH-------
Q 012101 225 MVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPN---VSSWT------- 294 (471)
Q Consensus 225 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~------- 294 (471)
...+.++..+..+++.+.+-+... .... .+..-++....+|...|.+..+...-....+.. ..-|+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a--~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKA--LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH--HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566666777788888887776 3333 455566777777888888777666555433311 11122
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-------------------------HHHHhccCCcHHHHHHHHH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVG-------------------------VLSACVHGGKVQEGKHFFE 349 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------------------------ll~~~~~~~~~~~a~~~~~ 349 (471)
.+..+|.+.++++.+...|.+.......|+..+-.. -...+.+.|++..|...+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 233456667788888888888766555554433111 1223556799999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 350 MMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 350 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
++.... +-|...|..-.-+|.+.|.+..|++-.+.. ...|+. ..|..=..++....+++.|.+.|.+..+.+|.+.
T Consensus 383 eAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 383 EAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 987652 456778999999999999999999877776 556654 3555556666777799999999999999998776
Q ss_pred chHHHHHHHHHc
Q 012101 428 GAYVVLSNIYAS 439 (471)
Q Consensus 428 ~~~~~l~~~~~~ 439 (471)
.....+.+++..
T Consensus 461 e~~~~~~rc~~a 472 (539)
T KOG0548|consen 461 EAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHH
Confidence 665556555553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00036 Score=67.89 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=138.9
Q ss_pred CCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCC------------CchhhHHHHHHHHHhCCCchHHHHHHHHHH
Q 012101 46 THEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSY------------SAAFHWNNIIRLYTRLEAPKKALDIYIFMS 113 (471)
Q Consensus 46 ~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 113 (471)
+-.+-. +|..+.++|.+ ..+++-|.-.+-.|... |+ ..=..+.-.-...|..++|..+|.+.+
T Consensus 753 ~IkS~~-vW~nmA~McVk---T~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck 827 (1416)
T KOG3617|consen 753 FIKSDS-VWDNMASMCVK---TRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCK 827 (1416)
T ss_pred HHhhhH-HHHHHHHHhhh---hccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334556 89999999988 56666665555444321 21 111122223356788999999999887
Q ss_pred HCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC----------
Q 012101 114 RAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP---------- 183 (471)
Q Consensus 114 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------- 183 (471)
. |..+=..|-..|.+++|.++-+.--+.. =..||.....-+-..+|.+.|++.|++-.
T Consensus 828 R---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL 895 (1416)
T KOG3617|consen 828 R---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML 895 (1416)
T ss_pred H---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH
Confidence 5 3344556777889999988876432211 12345555556666788898988887743
Q ss_pred -------------CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHH
Q 012101 184 -------------ERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQ 250 (471)
Q Consensus 184 -------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 250 (471)
.+|...|.......-..|+.+.|+.+|...++ |-++++..|-.|+.++|.++-++-
T Consensus 896 ~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-- 964 (1416)
T KOG3617|consen 896 KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES-- 964 (1416)
T ss_pred HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--
Confidence 12444566677777778999999999987753 456777778888888888876543
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 012101 251 VKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID 286 (471)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (471)
| |....--+.+.|-..|++.+|..+|-+..
T Consensus 965 ---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 965 ---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2 44556667888888888888888887654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-05 Score=64.53 Aligned_cols=250 Identities=14% Similarity=0.068 Sum_probs=151.6
Q ss_pred HHHhcCChhhHHHHhccCC-C-CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHH-H
Q 012101 165 LYSKAGDFEKARKVFDENP-E-RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLEL-A 241 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~-a 241 (471)
-+.-.|++..+...-.... . .++..-.-+-++|...|.+...+.-. +... .|....+..+.......++.+. .
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 3444567766665544322 2 23334444556677777665444322 2221 3444444444444444444333 3
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 012101 242 LQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGI 321 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 321 (471)
.++.+.+ .......+......-...|++.|++++|++..+.....+....+ ...+.+..+++-|.+.+++|.+-
T Consensus 93 ~~l~E~~--a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 93 ASLYELV--ADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHH--HhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc--
Confidence 3444444 44444444444444456688888888888888874433333332 34456777888888888888763
Q ss_pred CCCHHHHHHHHHHhcc----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHH
Q 012101 322 RPNHVTFVGVLSACVH----GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVVI 395 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~ 395 (471)
-+..|.+.|..++.+ .+.+..|.-+|++|.+ ...|+..+.+-...++...|++++|..+++.. ....+..+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 356677767766653 3567888888888865 35678778888888888888888888888887 33345667
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCC
Q 012101 396 WGCLMGACEKFGNV-KMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 396 ~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 427 (471)
+..++-+-...|.. +...+.+.+++...|..+
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66666655556654 445667777777666543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-06 Score=79.25 Aligned_cols=211 Identities=17% Similarity=0.151 Sum_probs=130.0
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASC 132 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 132 (471)
+...+...+.+ .|-..+|..+|+++. .|.-+|-+|...|+..+|..+..+-.++ +||...|..+.+...
T Consensus 400 ~q~~laell~s---lGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLS---LGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHH---cchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 44555556666 666777777776654 3666777777777777777776666653 566666666666666
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHH
Q 012101 133 QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~ 209 (471)
..--+++|.++.+..-.. .-..+.......++++++.+.|+.-.+- -..+|-.+..+..+.++++.|.+.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 555566666666554321 1111112222356777777777653322 233666666667777777777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 012101 210 FIGLKKCGFEPD-DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID 286 (471)
Q Consensus 210 ~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (471)
|...... .|| ...|+.+-.+|.+.++..+|...+.+. .+.+ ..+..+|...+-...+.|.+++|.+.++++.
T Consensus 542 F~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA--lKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 542 FHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA--LKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH--hhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 7766654 343 456777777777777777777777777 6665 3445566666666666777777776666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0001 Score=67.53 Aligned_cols=180 Identities=13% Similarity=0.065 Sum_probs=115.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV-TFVGVLSA 334 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~ 334 (471)
|+...+...+.+......-..+..++.+..+ .....+.-....+...|++++|+..++.+... .|+.. -.......
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i 349 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDI 349 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4444455555443333333333333322222 22222223333456678888888888888776 45544 44455577
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~ 411 (471)
+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+|..++++. ..+-|...|..|.++|...|+..+
T Consensus 350 ~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 88888889999888888754 565 445566778888889988888888888 444477788888888888888777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 412 GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
+.... .+.|...|++++|...+....+..-
T Consensus 427 a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 427 ALLAR-----------------AEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHH-----------------HHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 76544 3455666677777776666665543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.4e-05 Score=64.89 Aligned_cols=154 Identities=10% Similarity=0.076 Sum_probs=114.7
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHH
Q 012101 266 IDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGK 345 (471)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (471)
+-.|...|+++.+....+.+..+.. .+...++.+++...+++..+.. +.|...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567788888877655544333210 1123566677877787777653 556778888889999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012101 346 HFFEMMKNVYQIEPRFAHYGCMVDLL-GRAGL--LEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQ 420 (471)
Q Consensus 346 ~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 420 (471)
..|++..+.. +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|...++++.
T Consensus 94 ~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987542 23566777777764 67777 59999999998 6666 56788888899999999999999999999
Q ss_pred hcCCCCCchH
Q 012101 421 ELEPWSDGAY 430 (471)
Q Consensus 421 ~~~~~~~~~~ 430 (471)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9987665443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-05 Score=73.85 Aligned_cols=247 Identities=13% Similarity=0.067 Sum_probs=177.5
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 012101 196 GLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRM 275 (471)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 275 (471)
-+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+.++ ++.. +.|..+.-+|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rc--l~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRC--LELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHH--HhcC-CccHHHHHHHHHHHhhhhhH
Confidence 4567888999999999888774 456778888888888888888899988888 4433 33677788888889999999
Q ss_pred HHHHHHHHhcCCCCH-hhHHHHH---------HHHHhCCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHhccCCcHHHH
Q 012101 276 DLAYKVFWEIDQPNV-SSWTSMI---------VGYAANGLANEALDCFHYMR-ESGIRPNHVTFVGVLSACVHGGKVQEG 344 (471)
Q Consensus 276 ~~A~~~~~~~~~~~~-~~~~~li---------~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (471)
..|.+.+++...... ..|...- ..+.......+..++|-++. ..+..+|......|--.|.-.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998887642110 0000000 11122223344555555554 445335555666666667888999999
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 345 KHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVV-IWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 345 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
.+.|+.+... +|+ ..+||.|.-.++...+.++|...|.+. .++|+.+ +...|.-+|...|.+++|...|-.+..
T Consensus 450 iDcf~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999854 565 568999999999999999999999999 8899864 777788899999999999999988876
Q ss_pred cCCCC----------CchHHHHHHHHHcCCChHHHHHH
Q 012101 422 LEPWS----------DGAYVVLSNIYASRGLWEEVERI 449 (471)
Q Consensus 422 ~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~ 449 (471)
+.+.+ ..+|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 54331 13566666666666766644443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.5e-05 Score=63.68 Aligned_cols=149 Identities=15% Similarity=0.034 Sum_probs=67.2
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcH
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKV 341 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 341 (471)
+-..+...|+-+....+...... .|....+..+....+.|++..|...+++.... -++|...++.+--+|.+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 33344444444444444443221 22233333445555555555555555554443 234444555555555555555
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012101 342 QEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 342 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
+.|..-|.+..+..+-. ...++.+.-.|.-.|+.+.|..++... .-.-|...-..+.-+....|+++.|+.+.
T Consensus 151 ~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 151 DEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555554332111 223344444444555555555555544 11114444444444445555555555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00015 Score=61.10 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=134.3
Q ss_pred HHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHH
Q 012101 163 ISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAI-DMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELA 241 (471)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 241 (471)
-++|...|.+.....-...-..+.......+......-++.++-+ ++.+.+.......+......-...|+..++++.|
T Consensus 48 ~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deA 127 (299)
T KOG3081|consen 48 YRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEA 127 (299)
T ss_pred HHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHH
Confidence 345555565554443333333233333333444444445544444 3444444443344434444455567888999999
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CHhhHHHHHHHHHh----CCChhHHHHHHHHH
Q 012101 242 LQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP-NVSSWTSMIVGYAA----NGLANEALDCFHYM 316 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m 316 (471)
++..+.. . +......=+..+.+..+++-|++.+++|.+. +..+.+.|..++.+ .+.+.+|.-+|++|
T Consensus 128 l~~~~~~------~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~ 199 (299)
T KOG3081|consen 128 LKALHLG------E--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL 199 (299)
T ss_pred HHHHhcc------c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 8876532 1 2333444455677888899999999999884 44566666666654 45788999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 012101 317 RESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL-EEARAMVEGM 387 (471)
Q Consensus 317 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 387 (471)
.++ ..|+..+.+....++...|++++|..+++....+. .-++.+...+|..-...|.. +...+.+...
T Consensus 200 s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 200 SEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 875 68899999999999999999999999999988753 33445555555555555544 3344555555
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00017 Score=65.21 Aligned_cols=147 Identities=9% Similarity=-0.052 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CC----HHH
Q 012101 307 NEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA---GL----LEE 379 (471)
Q Consensus 307 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~ 379 (471)
++++.+++++.+.. +-|...|.....++...|+++++++.++++.+.. .-+...|+.....+.+. |. .++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHH
Confidence 34444554554432 1234444444444444555555555555554431 12223333332222222 11 234
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC------------
Q 012101 380 ARAMVEGM-PMKA-NVVIWGCLMGACEKF----GNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG------------ 441 (471)
Q Consensus 380 A~~~~~~m-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------ 441 (471)
..+....+ ...| |...|+.+...+... ++..+|...+.+..+.++.++.....|++.|....
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 44444333 4445 455677666666652 34456777777777777767667777888887532
Q ss_pred ------ChHHHHHHHHHhhcC
Q 012101 442 ------LWEEVERIRAVMKHR 456 (471)
Q Consensus 442 ------~~~~A~~~~~~m~~~ 456 (471)
..++|.++++.+.+.
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~ 302 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVA 302 (320)
T ss_pred cccccccHHHHHHHHHHHHhh
Confidence 346788888888433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.38 E-value=6e-07 Score=51.79 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDC 121 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 121 (471)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999988874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-05 Score=63.94 Aligned_cols=122 Identities=7% Similarity=-0.110 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 012101 311 DCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PM 389 (471)
Q Consensus 311 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 389 (471)
.++++..+. .|+. +......+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445554443 4543 4455667788899999999999886531 335667888888899999999999999998 55
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 390 KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 390 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
.| +...+..+..++...|++++|...|++..+..|.++..+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55 66788888899999999999999999999999988877766655543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0036 Score=61.93 Aligned_cols=414 Identities=13% Similarity=0.095 Sum_probs=207.7
Q ss_pred HHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCc
Q 012101 25 LCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAP 102 (471)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 102 (471)
...++.++++..... +.+.-.|+. .+...+.++...+ .|+.++|..+++.... ..|..+...+-..|.+.|..
T Consensus 19 ~ld~~qfkkal~~~~--kllkk~Pn~--~~a~vLkaLsl~r-~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLG--KLLKKHPNA--LYAKVLKALSLFR-LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHH--HHHHHCCCc--HHHHHHHHHHHHH-hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 334455555444333 333334443 3455555554432 5777888877776543 23556777777888888888
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC----------h
Q 012101 103 KKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD----------F 172 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~ 172 (471)
++|..+|++..+. .|+......+..+|.+.+++.+-.+.--++-+ .++.+...+=++++.+...-. .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 8888888888765 45666667777778887777665555555544 345555665566666654421 1
Q ss_pred hhHHHHhccCCCCC-c-ch---HHHHHHHHHcCCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHH
Q 012101 173 EKARKVFDENPERK-L-GS---WNAIIAGLSQDGRAKEAIDMFI-GLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHK 246 (471)
Q Consensus 173 ~~a~~~~~~~~~~~-~-~~---~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 246 (471)
.-|.+.++.+.+.+ . .+ ...-...+...|++++|++++. ..-+.-...+...-+.-+..+...++|.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23444444444333 1 11 1111223345677888888873 33333233344444456666677778888777777
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHH----------------hcCChHHHHHHHHhcCCC-CHhhHHHHHHHHH---hCCCh
Q 012101 247 YVFQVKSKQKSDTLMLNSLIDMYG----------------KCGRMDLAYKVFWEIDQP-NVSSWTSMIVGYA---ANGLA 306 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~~~~ 306 (471)
++ ...+..- |...++.+. ..+..+...+...+.... .-..|-+-+.... .-|+.
T Consensus 251 ~L--l~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ 324 (932)
T KOG2053|consen 251 RL--LEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDS 324 (932)
T ss_pred HH--HHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCCh
Confidence 77 5555321 333222221 112222222222222211 1122333333332 34666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChh-------HHHHHHHHHHhcCC---
Q 012101 307 NEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFA-------HYGCMVDLLGRAGL--- 376 (471)
Q Consensus 307 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~--- 376 (471)
+++...|-+ +-|..| .|..=+..|...=..++...++...... .++.. -+...+..-.-.|.
T Consensus 325 ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~ 396 (932)
T KOG2053|consen 325 EEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEK 396 (932)
T ss_pred HHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhcccc
Confidence 665554433 223232 2222222232222333333333333211 11111 01111111122221
Q ss_pred --HHHHHHHHHhC------C------CCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCchH
Q 012101 377 --LEEARAMVEGM------P------MKANV---------VIWGCLMGACEKFGNVK---MGEWVAKHLQELEPWSDGAY 430 (471)
Q Consensus 377 --~~~A~~~~~~m------~------~~p~~---------~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~ 430 (471)
-+....++.+. | .-|+. -+-+.|+..|.+.++.. +|+-+++......|.+..+-
T Consensus 397 l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~K 476 (932)
T KOG2053|consen 397 LPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTK 476 (932)
T ss_pred CChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHH
Confidence 11122222111 1 11222 23456677777777654 45556666666666666666
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 431 VVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
..++.+|.-.|-+..|.++++.+--++++.
T Consensus 477 LlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 477 LLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 677778877788888888887776655543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00051 Score=69.62 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=18.9
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSR 114 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 114 (471)
.+...|..|+..+...+++++|.++.+...+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~ 59 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK 59 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445566666666666666666666665444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.33 E-value=9e-07 Score=50.63 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLP 119 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 119 (471)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-05 Score=72.16 Aligned_cols=124 Identities=12% Similarity=0.039 Sum_probs=92.0
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEK 405 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~ 405 (471)
...++..+...++++.|.++|+++.+. .|+. ...+++.+...++-.+|.+++++. ...| +...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344555556667777788888777654 3543 335667777777777777777776 3333 56666666777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 406 FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.++++.|..+.+++.+..|.+-.+|..|+.+|.+.|++++|+-.++.+...
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 888899999999998888888888888999999999999999888888643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00015 Score=72.54 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=63.3
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCM 367 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 367 (471)
+..+-.|.....+.|++++|..+++...+. .|+ ......+...+.+.+++++|....+..... .|+ ......+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHH
Confidence 444445555555555555555555555543 333 223334444555555555555555555432 232 2233344
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 368 VDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
..++.+.|++++|..+|++. .-.|+ ..++..+..++...|+.++|...|++..+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 44555555555555555555 22222 4455555555555555555555555555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5e-05 Score=63.91 Aligned_cols=173 Identities=13% Similarity=0.070 Sum_probs=133.8
Q ss_pred HHHHHHHhcCC-C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHh
Q 012101 277 LAYKVFWEIDQ-P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 277 ~A~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
.+..+...... | |... ..+-..+...|+-+....+....... -.-|............+.|++..|...+++...
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~- 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR- 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 33444443332 3 3344 55667777888888888887775543 133444555577788889999999999999965
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 012101 355 YQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVV 432 (471)
Q Consensus 355 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 432 (471)
.-++|...|+.+.-+|.+.|+.+.|..-|.+. .+.| +....+.+...+.-.||.+.|..++.......+.+..+-..
T Consensus 129 -l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 129 -LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred -cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 44678889999999999999999999998888 5565 45678888888999999999999999999888878888888
Q ss_pred HHHHHHcCCChHHHHHHHHHh
Q 012101 433 LSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~m 453 (471)
+..+....|++++|.++...-
T Consensus 208 LAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 208 LALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHhhcCChHHHHhhcccc
Confidence 999999999999998876543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00017 Score=66.09 Aligned_cols=178 Identities=15% Similarity=0.018 Sum_probs=130.4
Q ss_pred ChHHHHHHHHhcCC------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHH
Q 012101 274 RMDLAYKVFWEIDQ------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHF 347 (471)
Q Consensus 274 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 347 (471)
++.+++..-+.+.. |+...+...+.+......-..+..++.+-.+ ..-...-|..-+. +...|+++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~-~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQ-TYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHH-HHHhcccchHHHH
Confidence 44555555566653 5555666666655443333333333322222 1122334555554 3467899999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 348 FEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 348 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
++.+... .+-|+..+....+.+.+.++.++|.+.++++ ...|+ ....-.+..++.+.|++.+|+.+++......|.
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 9998764 3445666677888999999999999999999 77787 556777889999999999999999999999999
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 426 SDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
++..|..|..+|...|+..+|.....++...
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 9999999999999999999999887776543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00015 Score=65.70 Aligned_cols=189 Identities=12% Similarity=0.074 Sum_probs=133.8
Q ss_pred HHHhcCChHHHHHHHHhcCCC---CHhhHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc--H
Q 012101 268 MYGKCGRMDLAYKVFWEIDQP---NVSSWTSMIVGYAANG-LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK--V 341 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~ 341 (471)
.+...++.++|..+..++.+. +..+|+..-.++...| ++++++..++++.+...+ +..+|+.--..+.+.|. .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 344556777888887777652 3345655555566666 578999999998876432 34455544434444454 3
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCH----HHH
Q 012101 342 QEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF---GNV----KMG 412 (471)
Q Consensus 342 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~---~~~----~~a 412 (471)
+.+..+++.+.+.. +-+...|+....++...|+++++++.++++ ...| |...|+.....+.+. |.. +..
T Consensus 125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 67788888887542 346678888888888999999999999999 4444 667787777666554 222 467
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHcC----CChHHHHHHHHHhhcCCCc
Q 012101 413 EWVAKHLQELEPWSDGAYVVLSNIYASR----GLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~ 459 (471)
..+..++.+..|.+.+.|..+..++... ++..+|.+.+.+....++.
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 8888899999999999999999998873 4556788888887665544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00019 Score=72.60 Aligned_cols=230 Identities=9% Similarity=0.059 Sum_probs=121.8
Q ss_pred chHHHHHHHHHhcCChhhHHHHhccCCC--CC-cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHc
Q 012101 157 FCESGFISLYSKAGDFEKARKVFDENPE--RK-LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACG 233 (471)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 233 (471)
..+..|+..|...+++++|.++.+...+ |+ +..|-.+...+.+.++.+++..+ .++....
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~~ 94 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDSFS 94 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhcc
Confidence 3455555555555555555555553322 11 11233333344444443333222 2222333
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHH
Q 012101 234 SLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEAL 310 (471)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 310 (471)
...++..+..++..+ .. ..-+...+-.+..+|-+.|+.++|..+++++.+ .|+.+.|.+.-.|... +.++|.
T Consensus 95 ~~~~~~~ve~~~~~i--~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 95 QNLKWAIVEHICDKI--LL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccchhHHHHHHHHH--Hh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 333444444444444 22 122334555666666666666666666666654 3455566666666666 666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012101 311 DCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRAGLLEEARAMVEGMPM 389 (471)
Q Consensus 311 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (471)
+++.+.... +...+++..+.++|.++.+. .|+. ..+-.+.+. +....+.
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~k------------i~~~~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERK------------VLGHREF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHH------------HHhhhcc
Confidence 666655443 44445666666666666532 2221 111111111 1111122
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 390 KANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 390 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
.--..++-.+-..|...++++++..+++.+.+..+.|.....-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2334556666677888889999999999999999888777777777775
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-05 Score=62.57 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=42.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWE 444 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 444 (471)
+...+...|++++|.+.++.. ...| +...+..+..++...|++++|...+++..+.+|.++..+..++.+|...|+++
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Confidence 334444444444444444444 2222 33344444444444555555555555554444444444444455555555555
Q ss_pred HHHHHHHHhhcC
Q 012101 445 EVERIRAVMKHR 456 (471)
Q Consensus 445 ~A~~~~~~m~~~ 456 (471)
+|.+.|+...+.
T Consensus 103 ~A~~~~~~al~~ 114 (135)
T TIGR02552 103 SALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHh
Confidence 555555444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-06 Score=49.24 Aligned_cols=34 Identities=35% Similarity=0.635 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPN 324 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 324 (471)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688899999999999999999999998888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-05 Score=61.67 Aligned_cols=94 Identities=9% Similarity=-0.069 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
.-.+...+...|++++|.++|+-. .+.| +...|..|..+|-..|++++|+..+.....+.|+++..+..++.+|...|
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 334555677899999999999998 6666 55678888889999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhcCC
Q 012101 442 LWEEVERIRAVMKHRN 457 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~~ 457 (471)
+.+.|++.|+......
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.8e-05 Score=69.23 Aligned_cols=128 Identities=11% Similarity=0.072 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG 339 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 339 (471)
....+|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|.+++++..+.. +-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445667777778889999999999988666666778888888888899999999988652 335556666667788999
Q ss_pred cHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012101 340 KVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRAGLLEEARAMVEGMPMKA 391 (471)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 391 (471)
+++.|..+.+++.+. .|+. .+|..|..+|.+.|+++.|+..++.++..|
T Consensus 249 ~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999754 5654 589999999999999999999999985443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=4e-06 Score=47.85 Aligned_cols=33 Identities=27% Similarity=0.593 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRP 323 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 323 (471)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 477888888888888888888888888888776
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.001 Score=66.30 Aligned_cols=346 Identities=13% Similarity=0.059 Sum_probs=180.1
Q ss_pred chHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhcc
Q 012101 102 PKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDE 181 (471)
Q Consensus 102 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 181 (471)
...|+..|-+..+..+. =...|..|-..|+...|...|.+.|++..+.+ .-+........+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55555555554443211 13456667677766667777777777776654 44556667777778888888887777433
Q ss_pred CCCCCcc-----hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC
Q 012101 182 NPERKLG-----SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK 256 (471)
Q Consensus 182 ~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 256 (471)
..+.+.. .|-...-.|...++...|+.-|+...+.. +.|...|..+..+|...|++..|.++|..+ . .+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kA--s--~Lr 626 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKA--S--LLR 626 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhh--H--hcC
Confidence 2222221 23333334556666777776666665543 445566677777777777777777777655 2 222
Q ss_pred CChhHHHHH--HHHHHhcCChHHHHHHHHhcCC---------CC-HhhHHHHHHHHHhCCChhHHHHHHHH-------HH
Q 012101 257 SDTLMLNSL--IDMYGKCGRMDLAYKVFWEIDQ---------PN-VSSWTSMIVGYAANGLANEALDCFHY-------MR 317 (471)
Q Consensus 257 ~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~~~~~~a~~~~~~-------m~ 317 (471)
|+. .|... .-.-+..|.+.+|...+..+.. .+ ..++-.+...+.-.|-..++.+++++ ..
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 322 12211 1223455666666666655442 00 11111111112222222222222221 11
Q ss_pred HcCCC--------------------CC---HHHHHHHHHHhccCCcH---H---HHHHHHHHhHHhcCCCCChhHHHHHH
Q 012101 318 ESGIR--------------------PN---HVTFVGVLSACVHGGKV---Q---EGKHFFEMMKNVYQIEPRFAHYGCMV 368 (471)
Q Consensus 318 ~~~~~--------------------p~---~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~p~~~~~~~li 368 (471)
.+... |+ ......+..-.-..+.. + -+.+.+-.-. .+..+..+|..++
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYPWYNLG 782 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccchHHHHh
Confidence 11111 22 11111111101111111 1 1111111111 1112233444444
Q ss_pred HHHHh----cC----CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 369 DLLGR----AG----LLEEARAMVEGM-PMK-ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 369 ~~~~~----~g----~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
..|.+ .| +...|...+... ... .+..+|+.|.-. ...|++.-+.-.|-+....+|.....|..+.-.+.
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEE
Confidence 33332 22 223455555555 333 356677777655 66688888888888888888888889999999999
Q ss_pred cCCChHHHHHHHHHhhcCCCc
Q 012101 439 SRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+..+++.|...|.+.+.-.+.
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCch
Confidence 999999999999988876553
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=57.93 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV----VIWGCLM 400 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~l~ 400 (471)
.|..++..+ ..++...+...++.+...++-.+ .....-.+...+...|++++|...|+.. ...||. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 35677777777777765532111 0122223445666777777777777777 222332 2344456
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 401 GACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
..+...|++++|...++.... .+..+..+...+++|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677778888888888765322 2233446667778888888888888877653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.009 Score=55.88 Aligned_cols=389 Identities=12% Similarity=0.087 Sum_probs=228.4
Q ss_pred CChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHH
Q 012101 48 EDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLP 125 (471)
Q Consensus 48 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 125 (471)
.|.. .|+.||+-+.. . ..++++..++++.. +.....|..-|..-.+..+++....+|.+...+- .+...|.
T Consensus 18 ~di~-sw~~lire~qt---~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~ 90 (656)
T KOG1914|consen 18 YDID-SWSQLIREAQT---Q-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWK 90 (656)
T ss_pred ccHH-HHHHHHHHHcc---C-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHH
Confidence 4566 99999988776 4 78888888887743 3456789999999999999999999999988763 4566777
Q ss_pred HHHHHHhc-cCCchH----HHHHHHHHH-HhCCCCCc-chHHHHHHH---------HHhcCChhhHHHHhccCCCC---C
Q 012101 126 IVLKASCQ-LFALEI----GRQLHSLAV-RLGLESNE-FCESGFISL---------YSKAGDFEKARKVFDENPER---K 186 (471)
Q Consensus 126 ~ll~~~~~-~~~~~~----a~~~~~~~~-~~~~~~~~-~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~---~ 186 (471)
+-|.-..+ .++... ..+.|+-.. +.|+.+-. ..|+..+.. |....+++...+++.++... +
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 77765433 233333 233344332 34544332 345554433 23344566777777775432 1
Q ss_pred cc-hHH------HHHH-----HH--HcCCChhHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHH---
Q 012101 187 LG-SWN------AIIA-----GL--SQDGRAKEAIDMFIGLKK--CGFEPDDV---------------TMVSVTSAC--- 232 (471)
Q Consensus 187 ~~-~~~------~li~-----~~--~~~~~~~~a~~~~~~m~~--~g~~p~~~---------------~~~~li~~~--- 232 (471)
+. .|+ .=|+ -+ -+...+..|.++++++.. +|..-... .|..+|..=
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 11 111 1111 00 112234445555544432 12110000 011111110
Q ss_pred ----------------------------------------------cCcCC-------HHHHHHHHHHHHHhhcCCCCCh
Q 012101 233 ----------------------------------------------GSLGD-------LELALQVHKYVFQVKSKQKSDT 259 (471)
Q Consensus 233 ----------------------------------------------~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 259 (471)
...|+ -+++..+++.. +..-...+.
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~--I~~l~~~~~ 328 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERA--IEGLLKENK 328 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHH--HHHHHHHHH
Confidence 00111 11222222222 111111112
Q ss_pred hHHHHHHHHHH---hcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 012101 260 LMLNSLIDMYG---KCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP-NHVTFVGV 331 (471)
Q Consensus 260 ~~~~~l~~~~~---~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 331 (471)
.+|..+.+.-- .....+.....++++.. .-..+|..+++.-.+......|..+|.+..+.+..+ +....+++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 22222211100 00113333344444332 234577888888888899999999999999998877 77888888
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhc
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM---PMKAN--VVIWGCLMGACEKF 406 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~l~~~~~~~ 406 (471)
+.-+| .++.+.|.++|+-=.+.+|-.| .--...++.+...++-..|..+|++. .+.|| ...|..++..-+.-
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 88776 4789999999998777654333 34457788888999999999999998 34554 46999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC--CC--CchHHHHHHHHHcCCChHHHHH
Q 012101 407 GNVKMGEWVAKHLQELEP--WS--DGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 407 ~~~~~a~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
||...+.++-++....-| .. ...-..+++-|.-.+.+..-..
T Consensus 486 GdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 486 GDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred ccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHH
Confidence 999999999988876554 11 1234455666655555444333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0077 Score=57.98 Aligned_cols=260 Identities=13% Similarity=0.057 Sum_probs=132.0
Q ss_pred HHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHH--------
Q 012101 22 LHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNII-------- 93 (471)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li-------- 93 (471)
++.+....++-.+.-+.+..+++.-.|++. +|..|.+.-.+ .-.++.|...|-+...-+.+..-..+-
T Consensus 664 ikslrD~~~Lve~vgledA~qfiEdnPHpr-LWrllAe~Al~---Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q 739 (1189)
T KOG2041|consen 664 IKSLRDVMNLVEAVGLEDAIQFIEDNPHPR-LWRLLAEYALF---KLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQ 739 (1189)
T ss_pred ehhhhhHHHHHHHhchHHHHHHHhcCCchH-HHHHHHHHHHH---HHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHH
Confidence 455555555666666677777777788888 88887766555 344566666665554433321111111
Q ss_pred --HHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC----cchHHHHHHHHH
Q 012101 94 --RLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESN----EFCESGFISLYS 167 (471)
Q Consensus 94 --~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~ 167 (471)
..-+--|++++|.++|-+|-.++ ..|....+.||+-.+.++++.- |-..| ...|+.+...++
T Consensus 740 ~aei~~~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa 807 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFA 807 (1189)
T ss_pred hHhHhhhhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHH
Confidence 11122367777777776665433 2345555666666555554431 11111 234556666666
Q ss_pred hcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHH
Q 012101 168 KAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKY 247 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 247 (471)
....+++|.+.|..-... ...+.++.+..++++-..+...+ +.|....-.+...+.+.|--++|.+.|-.
T Consensus 808 ~~~~We~A~~yY~~~~~~-----e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGDT-----ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHHHhccch-----HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 666666666665443211 12333333333333333332222 33334444555556666666666555422
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHH--------------HHHHHHhCCChhHHHHHH
Q 012101 248 VFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTS--------------MIVGYAANGLANEALDCF 313 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~~~~~~a~~~~ 313 (471)
.+.+ .+.+..|...++|.+|.++-++..-|.+.+.-+ -|..+.+.|++-+|-+++
T Consensus 878 -----~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll 946 (1189)
T KOG2041|consen 878 -----RSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLL 946 (1189)
T ss_pred -----ccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHH
Confidence 2221 123445555566666666665554443332211 233445566666666666
Q ss_pred HHHHH
Q 012101 314 HYMRE 318 (471)
Q Consensus 314 ~~m~~ 318 (471)
.+|.+
T Consensus 947 ~qmae 951 (1189)
T KOG2041|consen 947 SQMAE 951 (1189)
T ss_pred HHHhH
Confidence 66643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.4e-06 Score=58.68 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 012101 374 AGLLEEARAMVEGM-PMKA---NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERI 449 (471)
Q Consensus 374 ~g~~~~A~~~~~~m-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 449 (471)
.|+++.|..+++++ ...| +...+..+..++.+.|++++|..++++ .+.++.+......++.+|.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666666 2222 344455567777777777777777777 444454444555667777777777777777
Q ss_pred HHH
Q 012101 450 RAV 452 (471)
Q Consensus 450 ~~~ 452 (471)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.8e-05 Score=57.86 Aligned_cols=97 Identities=9% Similarity=0.007 Sum_probs=41.3
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMGAC 403 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~ 403 (471)
.+...+.+.|++++|.+.|..+...++-.+ ....+..+..++.+.|+++.|.+.++.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444445555555555555543311100 0122333444444455555555544444 21222 22344444444
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
.+.|+.++|...++++.+..|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCC
Confidence 44455555555555444444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.3e-05 Score=54.35 Aligned_cols=94 Identities=20% Similarity=0.135 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
+..+...+...|++++|...+++. ...|+ ...+..+...+...+++++|.+.+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888876 44443 3567777778888888888888888888888777777888888888888
Q ss_pred ChHHHHHHHHHhhcCC
Q 012101 442 LWEEVERIRAVMKHRN 457 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~~ 457 (471)
++++|.+.++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 8888888888776543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00026 Score=55.71 Aligned_cols=113 Identities=7% Similarity=-0.062 Sum_probs=83.2
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 012101 312 CFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PM 389 (471)
Q Consensus 312 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 389 (471)
.+++.... .|+ ......+...+...|++++|.+.++.+.... +.+...+..+...+...|++++|...++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444443 343 3445556667778888999999888886542 345667778888888889999999888887 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 390 KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 390 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.| +...+..+..++...|++++|...+++..+..|.+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 55 4567777888888999999999999999998886654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.5e-06 Score=45.53 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGV 117 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 117 (471)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0018 Score=54.40 Aligned_cols=164 Identities=16% Similarity=0.150 Sum_probs=106.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSM-IVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG 338 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 338 (471)
|..++-+....|+.+.|...++++.. |+..-...| ..-+-..|++++|+++++.+.+.. +.|.+++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 44445555666777777777776554 222111111 112334678888888888888765 44566666555555556
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG---NVKMGE 413 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~---~~~~a~ 413 (471)
|+--.|++-+.+..+. +..|...|.-+...|...|++++|.--++++ -+.| +...+..+...+.-.| +.+.+.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666777777777664 4677788888888888888888888888888 4555 4445555655554444 567778
Q ss_pred HHHHHHHhcCCCCCc
Q 012101 414 WVAKHLQELEPWSDG 428 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~ 428 (471)
+++.+..++.+.+..
T Consensus 212 kyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 212 KYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHhChHhHH
Confidence 888888888875543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0005 Score=68.82 Aligned_cols=131 Identities=9% Similarity=0.052 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CHhhHHH
Q 012101 219 EPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P-NVSSWTS 295 (471)
Q Consensus 219 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 295 (471)
..+...+..|..+..+.|..++|+.+++.+ .... +-+......+...+.+.+++++|...+++..+ | +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~--~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGI--HQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHH--HhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 344555555566666666666666666655 2221 11234445555556666666666666665554 2 2334444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 296 MIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+....
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555556666666666666665521 12245555555556666666666666666544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00097 Score=56.00 Aligned_cols=163 Identities=13% Similarity=0.147 Sum_probs=123.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGV-LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
.|..++-+....|+.+.|...++++...- |...-...+ .--+-..|.+++|.++++.+.++. +.|..++..=+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 34555666778899999999999998762 433211111 112344689999999999998762 4455566655556
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC---ChHH
Q 012101 371 LGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG---LWEE 445 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 445 (471)
.-..|+.-+|.+-+.+. .+..|...|.-+...|...|++++|.-.++++.=..|.++..+..+.+.+.-.| +++-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 66678877888877777 566699999999999999999999999999999999999988888888865444 5667
Q ss_pred HHHHHHHhhcCCC
Q 012101 446 VERIRAVMKHRNL 458 (471)
Q Consensus 446 A~~~~~~m~~~~~ 458 (471)
|.+.+++..+.+.
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8888888877655
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00026 Score=54.21 Aligned_cols=97 Identities=15% Similarity=-0.025 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHH
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS---DGAYVVLS 434 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 434 (471)
++-.++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++.+.|+++.|...++.+.+..|.+ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445666667777777777777776 32332 2355556677777777777777777777766543 23566667
Q ss_pred HHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 435 NIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.++.+.|++++|.+.++++.+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 7777777777777777777666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00099 Score=53.08 Aligned_cols=125 Identities=12% Similarity=0.066 Sum_probs=71.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHH
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESGIRPN--HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF--AHYGCMV 368 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li 368 (471)
|..++..+ ..++...+...++.+......-. ....-.+...+...|++++|...|+.+... ...|+. ...-.+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33444444 36666777666777666531111 122223345566677777777777777654 211211 1233455
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 369 DLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
..+...|++++|+..++.. +.......+.....++.+.|+.++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777777665 22223445556667777777777777777653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.3e-05 Score=70.14 Aligned_cols=103 Identities=10% Similarity=0.019 Sum_probs=84.0
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 409 (471)
...+...|+++.|.+.|+++.+.. +-+...|..+..+|.+.|++++|...++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 345567799999999999998652 234567778888999999999999999998 6666 566888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 410 KMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
++|...|+++.++.|.++.....+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999887665555444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.1e-05 Score=43.68 Aligned_cols=30 Identities=47% Similarity=0.782 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGI 321 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 321 (471)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.9e-05 Score=51.72 Aligned_cols=65 Identities=22% Similarity=0.124 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC-ChHHHHHHHHHhhcC
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG-LWEEVERIRAVMKHR 456 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 456 (471)
+..+|..+...+...|++++|+..|++..+.+|.++..|..++.+|.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999998889999999999999 799999999887654
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.8e-05 Score=51.52 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=46.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
+...+.+.|++++|...|+++.+..|.++..+..++.++...|++++|...|+++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 445677888888888888888888887777888888888888888888888888766543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0016 Score=58.22 Aligned_cols=133 Identities=16% Similarity=0.171 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESG-IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
.+|-.++...-+.+..+.|..+|.+..+.+ ...+.....+.+. +...++.+.|.++|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888999999999998543 2333333344443 333577888999999998875 456677889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 370 LLGRAGLLEEARAMVEGM-PMKANV----VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
.+...|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+..+.+++.+.-+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998 333333 489999999999999999999999998876653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.028 Score=51.50 Aligned_cols=134 Identities=7% Similarity=-0.036 Sum_probs=85.8
Q ss_pred cCCCC-ChHHHHHHHHHHHhcccccCchHHHHHHhcccCCC--CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 012101 44 LDTHE-DPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSY--SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPD 120 (471)
Q Consensus 44 ~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 120 (471)
+.-.| ++. .|-.|+.-|.. .+..++.++.++++..+ --..+|..-|++=...+++.....+|.+.....+ +
T Consensus 35 IkdNPtnI~-S~fqLiq~~~t---q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ 108 (660)
T COG5107 35 IKDNPTNIL-SYFQLIQYLET---QESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--N 108 (660)
T ss_pred hhcCchhHH-HHHHHHHHHhh---hhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--c
Confidence 33344 455 89999999988 78889999999988653 2345788888888888999999999999987644 5
Q ss_pred cchHHHHHHHHhccCCc------hHHHHHHHHHHH-hCCCCCc-chHHHHHHHHH---hcC------ChhhHHHHhccCC
Q 012101 121 CYTLPIVLKASCQLFAL------EIGRQLHSLAVR-LGLESNE-FCESGFISLYS---KAG------DFEKARKVFDENP 183 (471)
Q Consensus 121 ~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~~~-~~~~~ll~~~~---~~g------~~~~a~~~~~~~~ 183 (471)
...|..-+....+.+.. ....+.|+-... .++.|-. ..|+..+..+- ..| ++|.....+.++.
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 66777777665555422 122334444333 3454433 44555444322 223 3455566666554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00049 Score=59.67 Aligned_cols=112 Identities=15% Similarity=0.027 Sum_probs=84.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCchHHH
Q 012101 358 EPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG---NVKMGEWVAKHLQELEPWSDGAYVV 432 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~ 432 (471)
+-|...|-.|...|...|+.+.|...|.+. .+.| +...+..+..++.... ...++..+|+++.+.+|.+......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 446678888888888888888888888887 4443 4445555555544322 4567888888888888888888888
Q ss_pred HHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceeec
Q 012101 433 LSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATR 469 (471)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 469 (471)
|...+...|++.+|...|+.|.+......|..+.+++
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 8888888888888888888888888777777666654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00032 Score=51.06 Aligned_cols=80 Identities=18% Similarity=0.038 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCcchHHHHHHHHhccCC--------chHHHHHHHHHHHhCCCCCcchH
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGV-LPDCYTLPIVLKASCQLFA--------LEIGRQLHSLAVRLGLESNEFCE 159 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~ 159 (471)
....|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++..- .-....+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34466777777999999999999999999 9999999999998876532 24567889999999999999999
Q ss_pred HHHHHHHHh
Q 012101 160 SGFISLYSK 168 (471)
Q Consensus 160 ~~ll~~~~~ 168 (471)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00035 Score=64.93 Aligned_cols=114 Identities=8% Similarity=0.020 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCCCc-----hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSA-----AFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIV 127 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 127 (471)
-...+++.+.. ..+++.+..++.+....|+ ..+..++|+.|.+.|..++++.+++.=...|+-||..+++.+
T Consensus 68 dld~fvn~~~~---~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 68 DLDIFVNNVES---KDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred HHHHHHhhcCC---HhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44455666655 5556666666555443221 124468888888888888888888888888888888888888
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhc
Q 012101 128 LKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKA 169 (471)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 169 (471)
|+.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887776666666666555555555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00051 Score=56.58 Aligned_cols=81 Identities=10% Similarity=-0.023 Sum_probs=36.9
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
+..+...+...|++++|...|++..+...-.++ ...+..+...+.+.|++++|...+++. ...| +...+..+..++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444444455556666666666555432111111 234444555555555555555555554 3333 2233444444444
Q ss_pred hcCC
Q 012101 405 KFGN 408 (471)
Q Consensus 405 ~~~~ 408 (471)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 4443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.04 Score=49.95 Aligned_cols=110 Identities=13% Similarity=0.199 Sum_probs=85.9
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEK 405 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 405 (471)
.+.+..+.-|...|+...|.++-++. ++ |+...|-.-+.+|+..++|++-.++... +-++.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35555666677788888888877666 44 8888999999999999999988887654 3345788899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 406 FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
.|+..+|..+..++ .+..-+..|.++|+|.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999888761 235778889999999998776433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.4e-05 Score=51.51 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=51.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 400 MGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
...|.+.+++++|.+.++++.+.+|.++..+...+.+|.+.|++++|.+.++...+.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 3567888889999999999998888888888888888999999999999888888776643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00021 Score=50.84 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANV-VIWGCLMGACEKFGNVKMGEWVAK 417 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~ 417 (471)
|+++.|+.+++++.+.....++...+-.+..+|.+.|++++|..+++..+..|+. .....+..+|.+.|++++|++.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3444444444444433111112222333444444444444444444443222211 222233344444555555544444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.9e-05 Score=50.24 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=44.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+.|++++|++.|+++.+..|.+...+..++.+|.+.|++++|.++++++......
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45688888888888888888888888888888888888888888888888776554
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00084 Score=55.35 Aligned_cols=98 Identities=12% Similarity=0.206 Sum_probs=72.9
Q ss_pred HHHHHhc--CCCCHhhHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC-------------
Q 012101 279 YKVFWEI--DQPNVSSWTSMIVGYAA-----NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG------------- 338 (471)
Q Consensus 279 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 338 (471)
...|+.. ...+..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 34677778788877765 467777888889999999999999999999987653
Q ss_pred ---CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 012101 339 ---GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 339 ---~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
.+-+-|++++++| +.+|+-||..++..+++.+++.+.+
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccHH
Confidence 2345677888888 5558888888888888777766653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00073 Score=55.46 Aligned_cols=92 Identities=14% Similarity=-0.091 Sum_probs=68.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 360 RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
....|..+...+...|++++|...|++. .+.|+ ..++..+...+...|++++|...+++..+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3455666777777888888888888887 33332 347888888899999999999999999988887777777777
Q ss_pred HHHH-------cCCChHHHHHHHH
Q 012101 435 NIYA-------SRGLWEEVERIRA 451 (471)
Q Consensus 435 ~~~~-------~~g~~~~A~~~~~ 451 (471)
.+|. +.|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 7777 7778775444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0017 Score=60.55 Aligned_cols=118 Identities=14% Similarity=0.025 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCHhhHH
Q 012101 219 EPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSSWT 294 (471)
Q Consensus 219 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 294 (471)
+.+......+++.+....+.+.+..++............-..+..++++.|.+.|..+++..+++.=.. ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555554211112222233344556666666666665555554333 5556666
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
.+|..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 666666666666666666655555554455555544444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.011 Score=56.55 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHH---------HHHHHCCCCCCcchHHHHHHHHhccCCchH--HHHHHHHHHHhCCCC
Q 012101 86 AFHWNNIIRLYTRLEAPKKALDIY---------IFMSRAGVLPDCYTLPIVLKASCQLFALEI--GRQLHSLAVRLGLES 154 (471)
Q Consensus 86 ~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~ 154 (471)
...+.+-+-.|...|.+++|..+- +.+... ..+.-.+++.=++|.+.++..- ...-++++.+.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 344555566677777777776432 111111 1123334555566666665543 333355666777667
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHhcc
Q 012101 155 NEFCESGFISLYSKAGDFEKARKVFDE 181 (471)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~ 181 (471)
+... +...++-.|.+.+|.++|.+
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 6543 44567778888888888754
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.057 Score=48.95 Aligned_cols=110 Identities=19% Similarity=0.162 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK 340 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 340 (471)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..+++++-..+-.. .- .+.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 3444566667788888888888888778888888888888888888877765432 11 23667888888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 341 VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
..+|..+...+. +..-+..|.++|++.+|.+.--+.
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888777742 134567788888888887754444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0013 Score=47.95 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=67.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHcCcC--------CHHHHHHHHHHHHHhhcCCCCCh
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGF-EPDDVTMVSVTSACGSLG--------DLELALQVHKYVFQVKSKQKSDT 259 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 259 (471)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .......+|+.| +..+++|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDi--L~~~lKP~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDI--LSNKLKPND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH--HHhccCCcH
Confidence 334566667777999999999999999999 999999999999876543 345677889999 888999999
Q ss_pred hHHHHHHHHHHh
Q 012101 260 LMLNSLIDMYGK 271 (471)
Q Consensus 260 ~~~~~l~~~~~~ 271 (471)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0041 Score=60.43 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=87.0
Q ss_pred CCHhhHHHHHHHHHhC--C---ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhccC--------CcHHHHHHHHHHhHH
Q 012101 288 PNVSSWTSMIVGYAAN--G---LANEALDCFHYMRESGIRPNH-VTFVGVLSACVHG--------GKVQEGKHFFEMMKN 353 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~--~---~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 353 (471)
.|...|...+++.... + +...|..+|++..+. .|+- ..+..+..++... .+...+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 5667777777765432 2 356788888888875 5553 3333332222111 122333444443322
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 354 VYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 354 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
......+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|.+.++++.+++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1112334456666666666678888888888887 66677778888888888888888888888888888887663
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0022 Score=57.74 Aligned_cols=155 Identities=10% Similarity=-0.005 Sum_probs=92.4
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--HhccCCcHHHHHHHHHHhHHhcCCCCChhHH------------
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS--ACVHGGKVQEGKHFFEMMKNVYQIEPRFAHY------------ 364 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~------------ 364 (471)
++...|++++|.+.--...+.. ++ ..+...++ ++-..++.+.|...|++... +.|+-..-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 4455677777776655554432 11 12223332 23345677777777777653 34443221
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012101 365 -GCMVDLLGRAGLLEEARAMVEGM-PMKA-----NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIY 437 (471)
Q Consensus 365 -~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (471)
..=..-..+.|++.+|.+.+.+. ++.| +...|.....+..+.|+..+|+.-.++..++++.-...|..-.+++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 11122345677788888877776 4444 4444555555667778888888888887777765445555666667
Q ss_pred HcCCChHHHHHHHHHhhcCCCc
Q 012101 438 ASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.-.++|++|.+-++...+....
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 7777888888877776655443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0014 Score=47.36 Aligned_cols=91 Identities=19% Similarity=0.119 Sum_probs=46.7
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 409 (471)
...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.. ...| +..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 334444555555555555554321 112234444555555556666666655554 2222 224555555666666666
Q ss_pred HHHHHHHHHHHhcCC
Q 012101 410 KMGEWVAKHLQELEP 424 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~ 424 (471)
+.|...+.+..+..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.002 Score=59.80 Aligned_cols=101 Identities=12% Similarity=-0.000 Sum_probs=81.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 012101 296 MIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRA 374 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 374 (471)
-...+...|++++|++.|++..+.. +-+...|..+..+|...|++++|...++.+... .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3456678899999999999999864 335667778888899999999999999999764 34 456788888999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 012101 375 GLLEEARAMVEGM-PMKANVVIWGCLM 400 (471)
Q Consensus 375 g~~~~A~~~~~~m-~~~p~~~~~~~l~ 400 (471)
|++++|...|++. .+.|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999998 6777665554444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0045 Score=55.58 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=92.8
Q ss_pred ChhHHHHHHHHHHH----cCCCCC--HHHHHHHHHHhccC-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh
Q 012101 305 LANEALDCFHYMRE----SGIRPN--HVTFVGVLSACVHG-GKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGR 373 (471)
Q Consensus 305 ~~~~a~~~~~~m~~----~~~~p~--~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~ 373 (471)
++++|.+.+++..+ .| .|+ ...+..+...|... |+++.|.+.|++..+.+.-... ...+..+...+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 55555555555432 22 222 23455566677777 8999999999888665432222 2345677788999
Q ss_pred cCCHHHHHHHHHhC-------C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHc
Q 012101 374 AGLLEEARAMVEGM-------P-MKANVV-IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG-----AYVVLSNIYAS 439 (471)
Q Consensus 374 ~g~~~~A~~~~~~m-------~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~ 439 (471)
.|++++|.++|++. + .+.+.. .+-..+-++...||+..|...+++.....|.-.. +...|+.+|-.
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 99999999999987 1 122222 2333444777889999999999999887653221 44567777764
Q ss_pred --CCChHHHHHHHHHhhc
Q 012101 440 --RGLWEEVERIRAVMKH 455 (471)
Q Consensus 440 --~g~~~~A~~~~~~m~~ 455 (471)
...+++|..-|+.+..
T Consensus 248 ~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp T-CCCHHHHCHHHTTSS-
T ss_pred CCHHHHHHHHHHHcccCc
Confidence 3567777777766554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00057 Score=61.07 Aligned_cols=130 Identities=8% Similarity=0.069 Sum_probs=98.8
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR-AGLLEEARAMVEGM--PMKANVVIWGCLMGA 402 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~ 402 (471)
.+|..++...-+.+..+.|+.+|.+..+.. ..+..+|......-.. .++.+.|.++|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467788888888899999999999997542 2334455555555334 56677799999998 444577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSD---GAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
+.+.++.+.|..+|++....-+... ..|...++.-.+.|+.+.+.++.+++.+.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987654333 378889999999999999999999887653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.05 Score=47.45 Aligned_cols=57 Identities=25% Similarity=0.135 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHcCcCCHHHHHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD-VTM---VSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~---~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
+-.....+.+.|++++|.+.|+++... .|+. ... ..+..++.+.++++.|...+++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334455556678888888888888765 3332 221 34556667778888888887777
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00052 Score=59.19 Aligned_cols=101 Identities=17% Similarity=0.119 Sum_probs=83.4
Q ss_pred HhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVK 410 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~ 410 (471)
-..+.+++++|...|.+..+ +.|+ .+.|..=..+|.+.|.++.|.+-.+.. .+.|.. .+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 36788999999999999974 3554 555667778999999999999988887 888865 59999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012101 411 MGEWVAKHLQELEPWSDGAYVVLSNIY 437 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (471)
+|++.|++..++.|.+......|-.+-
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 999999999999998875444444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0023 Score=52.72 Aligned_cols=91 Identities=14% Similarity=0.026 Sum_probs=64.8
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPD--CYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGF 162 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (471)
....|..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|+++.|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677778888888999999999998876543322 3567777778888899999999988888753 3344556666
Q ss_pred HHHHHhcCChhhHH
Q 012101 163 ISLYSKAGDFEKAR 176 (471)
Q Consensus 163 l~~~~~~g~~~~a~ 176 (471)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66777766655444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.13 Score=50.42 Aligned_cols=324 Identities=12% Similarity=0.111 Sum_probs=177.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFAL---EIGRQLHSLAVRLGLESNEFCESGFISLYS 167 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 167 (471)
.+|+-+...+.+..|+++-+.+...-.. ....|.....-+.+..+. +.+..+-+++.. .. -+-..|.....--.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cC-CCceeHHHHHHHHH
Confidence 4677777778888888888777532111 145666666666555322 222222222211 11 23344566666666
Q ss_pred hcCChhhHHHHhccCCCC--------CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHH
Q 012101 168 KAGDFEKARKVFDENPER--------KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 239 (471)
.+|+.+-|..+++.=+.. +..-+...+.-+.+.|+.+-...++-.+... .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 778888888887653321 1224566667777777877777777766643 1111222111 2334
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHH-HhcC-----CCCHhhHHHHHHHHHhCCC--------
Q 012101 240 LALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVF-WEID-----QPNVSSWTSMIVGYAANGL-------- 305 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~-----~~~~~~~~~li~~~~~~~~-------- 305 (471)
.|..+|.+. .+.... ..+-+.|-...+...+-.+- +... .+-..........+.+...
T Consensus 590 ~a~~lY~~~--~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 590 LALSLYRQF--MRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhhHHHHHH--HHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 445555544 221111 11222222222222211111 1100 1111112222333333322
Q ss_pred --hhHHHHHHHHHHH-cCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 012101 306 --ANEALDCFHYMRE-SGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARA 382 (471)
Q Consensus 306 --~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 382 (471)
..+-+.+.+.+.. .|..-...+.+--+.-+...|+-.+|.++-.+++ -||...|-.=+.+++..+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 1112222233322 2333444455556666677788888888888774 4888888888889999999998888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 012101 383 MVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 383 ~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
+-+.+. .+.-|.-+..+|.+.|+.++|.+++-+.-. +.-.+.+|.+.|++.+|.++-
T Consensus 737 fAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 737 FAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 877773 244567788899999999999988765422 225677888888888887653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0086 Score=53.76 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHH
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFM 112 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m 112 (471)
|+.....|...|++++|.+.|.+.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHH
Confidence 444555666666777776666665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0053 Score=59.63 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=103.7
Q ss_pred CCCCCHHHHHHHHHHhccC-----CcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhc--------CCHHHHHHHHH
Q 012101 320 GIRPNHVTFVGVLSACVHG-----GKVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRA--------GLLEEARAMVE 385 (471)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~ 385 (471)
+.+.|...|...+.+.... +..+.|..+|++..+. .|+. ..|..+..+|... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4566778888888875432 3477899999999854 6774 3344433333221 12344555555
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 386 GM----PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 386 ~m----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
.. ....+...|..+.-.....|++++|...++++.+++| +...|..++.+|...|+.++|.+.+++....++..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~- 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE- 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Confidence 43 1333557788777777778999999999999999998 56789999999999999999999999998877753
Q ss_pred CCcceeec
Q 012101 462 PAYSLATR 469 (471)
Q Consensus 462 ~~~s~~~~ 469 (471)
|.+-|.+.
T Consensus 487 pt~~~~~~ 494 (517)
T PRK10153 487 NTLYWIEN 494 (517)
T ss_pred chHHHHHh
Confidence 45666554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00075 Score=45.14 Aligned_cols=60 Identities=22% Similarity=0.133 Sum_probs=46.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
+...+.+.|++++|.+.|+.. ...| +...+..+..++...|++++|...|+++.+..|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 455677888888888888888 5556 45578888888889999999999999988888765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.038 Score=48.14 Aligned_cols=170 Identities=12% Similarity=0.058 Sum_probs=92.4
Q ss_pred HHHhcCChHHHHHHHHhcCC--CCHh-h---HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc--C-
Q 012101 268 MYGKCGRMDLAYKVFWEIDQ--PNVS-S---WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH--G- 338 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~- 338 (471)
.+.+.|++++|.+.|+.+.. |+.. . .-.++.++.+.+++++|...+++..+....-....+...+.+.+. .
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 34455666666666666654 2221 1 123445666677777777777777665322222233333333221 0
Q ss_pred --------------Cc---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012101 339 --------------GK---VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMG 401 (471)
Q Consensus 339 --------------~~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~ 401 (471)
.+ ...|.+.|+.+.+.+ |+. .-..+|...+..+...--..-+ .+..
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~~e~-~ia~ 183 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAKYEL-SVAE 183 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 11 223445555554442 332 2223333332222100001111 3456
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 402 ACEKFGNVKMGEWVAKHLQELEPWSDG---AYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 402 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
-|.+.|.+..|..-++.+.+.-|..+. ....++.+|.+.|..++|.++...+.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 678888999999999999887776553 56678888999999999988776654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00082 Score=55.42 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=71.1
Q ss_pred HHHHhcccC-CCCchhhHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC-----------
Q 012101 73 HIIRTHMLH-SYSAAFHWNNIIRLYTRL-----EAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF----------- 135 (471)
Q Consensus 73 a~~~~~~~~-~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------- 135 (471)
....|++.. ...+-.+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 334444442 235667777777777654 556667777888888888888888888888765431
Q ss_pred -----CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 012101 136 -----ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD 171 (471)
Q Consensus 136 -----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 171 (471)
+-+-|..++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 236778888888888888888888888888766543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.11 Score=47.96 Aligned_cols=387 Identities=11% Similarity=0.041 Sum_probs=214.3
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHH--HhCCCchHHHHHHHHHHHC--CCCC---------
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLY--TRLEAPKKALDIYIFMSRA--GVLP--------- 119 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p--------- 119 (471)
..+.+|++|.. ++++.....+.+....-....|-.+..+. -+.+.+++|++.+....+. +..|
T Consensus 48 l~grilnAffl----~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~ 123 (549)
T PF07079_consen 48 LGGRILNAFFL----NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ 123 (549)
T ss_pred HhhHHHHHHHH----hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 45677888875 45555555544443321134566665543 4578899999988877654 3222
Q ss_pred ---CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCC----CCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHH
Q 012101 120 ---DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLE----SNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNA 192 (471)
Q Consensus 120 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 192 (471)
|-..=+..+..+...|.+.+++.+++++...=++ -+..+|+.++-+++++=-.+--.. +...=..-|..
T Consensus 124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~----~s~dl~pdyYe 199 (549)
T PF07079_consen 124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKES----MSSDLYPDYYE 199 (549)
T ss_pred HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHh----cccccChHHHH
Confidence 1112244566788999999999999998775444 788888887766665422211111 11100112222
Q ss_pred HHHHHHcC-------------------------------CChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHcCcCCHHH
Q 012101 193 IIAGLSQD-------------------------------GRAKEAIDMFIGLKKCGFEPDDVTM-VSVTSACGSLGDLEL 240 (471)
Q Consensus 193 li~~~~~~-------------------------------~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~~~ 240 (471)
++..|.+. .+..--+++++.....-+.|+.... ..+...+.+ +.++
T Consensus 200 milfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~ 277 (549)
T PF07079_consen 200 MILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQ 277 (549)
T ss_pred HHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHH
Confidence 33222221 1122223333333334455554332 233444433 5666
Q ss_pred HHHHHHHHHHhhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHH-------HHHHHHHhC----
Q 012101 241 ALQVHKYVFQVKSKQKS----DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWT-------SMIVGYAAN---- 303 (471)
Q Consensus 241 a~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-------~li~~~~~~---- 303 (471)
+..+-+.+ ......+ =..++..++....+.++...|.+.+.-+.- |+...-. .+-+..+..
T Consensus 278 ~~~~ce~i--a~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~ 355 (549)
T PF07079_consen 278 VGHFCEAI--ASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESY 355 (549)
T ss_pred HHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHH
Confidence 66666555 2222111 134566777777788888888877765543 4332111 222223311
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---hccCCc-HHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHHhc-
Q 012101 304 GLANEALDCFHYMRESGIRPNHVTFVGVLSA---CVHGGK-VQEGKHFFEMMKNVYQIEPRFAHYGCM----VDLLGRA- 374 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~- 374 (471)
-+...-+.+|.......+.- ......++.+ +-+.|. -++|.++++.+.+-. +-|...-|.+ =..|...
T Consensus 356 Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaL 432 (549)
T PF07079_consen 356 TKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQAL 432 (549)
T ss_pred HHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHH
Confidence 12334445555555443221 1122222222 333444 788999998886431 2232222221 1233322
Q ss_pred --CCHH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 375 --GLLE---EARAMVEGMPMKA----NVVIWGCLMGA--CEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 375 --g~~~---~A~~~~~~m~~~p----~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
..+. +-..++++.|+.| +...-|.|..| +..+|++.++.-.-..+.+..| ++.+|..++-++....++
T Consensus 433 s~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y 511 (549)
T PF07079_consen 433 SMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRY 511 (549)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhH
Confidence 1122 2333444556665 34455666654 5688999999999999999999 788999999999999999
Q ss_pred HHHHHHHHHhhc
Q 012101 444 EEVERIRAVMKH 455 (471)
Q Consensus 444 ~~A~~~~~~m~~ 455 (471)
++|++++.++.-
T Consensus 512 ~eA~~~l~~LP~ 523 (549)
T PF07079_consen 512 QEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHhCCC
Confidence 999999998765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.002 Score=55.63 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=81.5
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCH
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 377 (471)
-..+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+.... +.|. ...|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcH
Confidence 4567899999999999999862 34666777788899999999999999888864 3555 46899999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHH
Q 012101 378 EEARAMVEGM-PMKANVVIWGCLM 400 (471)
Q Consensus 378 ~~A~~~~~~m-~~~p~~~~~~~l~ 400 (471)
++|.+.|++. .+.|+-.+|-.=+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHH
Confidence 9999999998 8999877665544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0024 Score=56.11 Aligned_cols=84 Identities=10% Similarity=-0.011 Sum_probs=38.4
Q ss_pred hcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChH
Q 012101 373 RAGLLEEARAMVEGM-PMKANV----VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG---AYVVLSNIYASRGLWE 444 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 444 (471)
+.|++++|...|+.+ ...|+. ..+.-+..+|...|++++|...|+.+.+..|.++. .+..++.+|...|+++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 344444444444444 222221 23334444555555555555555555544443322 2333344454555555
Q ss_pred HHHHHHHHhhcC
Q 012101 445 EVERIRAVMKHR 456 (471)
Q Consensus 445 ~A~~~~~~m~~~ 456 (471)
+|.++++.+.+.
T Consensus 235 ~A~~~~~~vi~~ 246 (263)
T PRK10803 235 KAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.025 Score=45.46 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 012101 321 IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA---NVVIW 396 (471)
Q Consensus 321 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~ 396 (471)
+.|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....+++..|...++.+ ...| +..+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3566666666677777777777777777776542 33455666666777777777777777777776 2122 12233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 397 GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
-.+.+.+...|.+..|+..|+...+.-|. +..-......+.++|+.++|..-+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 44556777777777777777777776653 3444555666777776666554333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0031 Score=49.85 Aligned_cols=87 Identities=10% Similarity=-0.068 Sum_probs=65.5
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHH
Q 012101 370 LLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVE 447 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 447 (471)
-+...|++++|..+|.-+ -..| |..-|..|..+|-..+++++|...+.....+.+.+|..+...+.+|...|+.+.|+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 345678888888888777 2222 55566777777777888888888888888777777777888888888888888888
Q ss_pred HHHHHhhcC
Q 012101 448 RIRAVMKHR 456 (471)
Q Consensus 448 ~~~~~m~~~ 456 (471)
+.|+...+.
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 888777663
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.07 Score=48.94 Aligned_cols=159 Identities=16% Similarity=0.074 Sum_probs=96.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCC-C------HhhHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQP-N------VSSWTSMIVGYAA---NGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
.++-.|....+++...++++.+... + ...-....-++-+ .|+.++|.+++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777777777777777652 1 1111223334445 6788888888888655555677777776666
Q ss_pred Hhcc---------CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH----HHHHHH---HhC-------CCC
Q 012101 334 ACVH---------GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE----EARAMV---EGM-------PMK 390 (471)
Q Consensus 334 ~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m-------~~~ 390 (471)
.|-. ....++|...|.+.- .+.|+...--.++..+...|... +..++- ..+ .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 223667777777654 44565544333333333334321 222222 111 223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 391 ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 391 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
.|-..+.+++.++.-.||+++|.+..+++.++.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 46677888999999999999999999999988754
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.007 Score=45.85 Aligned_cols=82 Identities=15% Similarity=-0.024 Sum_probs=39.1
Q ss_pred HHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHcCC
Q 012101 370 LLGRAGLLEEARAMVEGM---PMKAN--VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW---SDGAYVVLSNIYASRG 441 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 441 (471)
++-..|+.++|..+|++. +.... ...+-.+..++...|++++|..++++.....|. +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 344455555555555544 22211 123444445555555555555555555554443 2223333444555555
Q ss_pred ChHHHHHHHH
Q 012101 442 LWEEVERIRA 451 (471)
Q Consensus 442 ~~~~A~~~~~ 451 (471)
+.++|++.+-
T Consensus 90 r~~eAl~~~l 99 (120)
T PF12688_consen 90 RPKEALEWLL 99 (120)
T ss_pred CHHHHHHHHH
Confidence 5555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.012 Score=44.50 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=50.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC--CChhHHHHHHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGFEPD--DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK--SDTLMLNSLIDM 268 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~ 268 (471)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++.. ...... .+......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~--~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA--LEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHCCCccccHHHHHHHHHH
Confidence 34455566777777777777777765543 234445566666777777777777766 332111 111222222334
Q ss_pred HHhcCChHHHHHHHHhc
Q 012101 269 YGKCGRMDLAYKVFWEI 285 (471)
Q Consensus 269 ~~~~g~~~~A~~~~~~~ 285 (471)
+...|+.++|...+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 45556666666555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.31 Score=48.97 Aligned_cols=416 Identities=12% Similarity=0.025 Sum_probs=221.7
Q ss_pred chhHHHHHHhhhchhhhhH--HHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC-CCchhhHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVT--ISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS-YSAAFHWNNIIR 94 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~ 94 (471)
|..++.++.-.+-.+...+ +.+....++- +|.. +...+-..|.. .+..++|..++++... -|+..-...+.-
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~-tLq~l~~~y~d---~~~~d~~~~~Ye~~~~~~P~eell~~lFm 118 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDL-TLQFLQNVYRD---LGKLDEAVHLYERANQKYPSEELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchH-HHHHHHHHHHH---HhhhhHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 5556666655554333323 2332222222 2555 77888888888 8889999999998764 366555666777
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC-Cc---------hHHHHHHHHHHHhC-CCCCcchHHHHH
Q 012101 95 LYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF-AL---------EIGRQLHSLAVRLG-LESNEFCESGFI 163 (471)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~---------~~a~~~~~~~~~~~-~~~~~~~~~~ll 163 (471)
+|+|.+++.+-.+.--+|-+. .+-+.+.|=.+++...+.. .. .-|....+.+.+.+ --.+..-...-.
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl 197 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL 197 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 889988887655555555442 3445566656666554432 11 23455555555543 111111122233
Q ss_pred HHHHhcCChhhHHHHhcc-----CCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHc----C
Q 012101 164 SLYSKAGDFEKARKVFDE-----NPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACG----S 234 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~ 234 (471)
..+...|++++|.+++.. ....+...-+--+..+...+++.+..++-.++...| +|. |...+.... .
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~ 273 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLEL 273 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHh
Confidence 455678899999999832 233344445566777888899999999999999886 343 333222211 1
Q ss_pred c------------CCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh---cCChHHHHHHH-HhcCCCCHhhHHHHHH
Q 012101 235 L------------GDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK---CGRMDLAYKVF-WEIDQPNVSSWTSMIV 298 (471)
Q Consensus 235 ~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~-~~~~~~~~~~~~~li~ 298 (471)
. +..+...+..... + |. .....|-+-+.++.+ -|+.+++...| ++.- +...|..=+.
T Consensus 274 ~~~~~a~~~~s~~~~l~~~~ek~~~~--i--~~-~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg--~kpcc~~Dl~ 346 (932)
T KOG2053|consen 274 LNKEPAEAAHSLSKSLDECIEKAQKN--I--GS-KSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFG--DKPCCAIDLN 346 (932)
T ss_pred cccccchhhhhhhhhHHHHHHHHHHh--h--cc-cccCcHHHHHHHHHHhcccCChHHHHHHHHHHhC--CCcHhHhhHH
Confidence 1 0111111111111 1 11 112233344444433 36666654333 3332 2233444445
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHH----H---HHHHHHHhccCCc-----HHHHHHHHHHhHHh--cC------CC
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHV----T---FVGVLSACVHGGK-----VQEGKHFFEMMKNV--YQ------IE 358 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~---~~~ll~~~~~~~~-----~~~a~~~~~~~~~~--~~------~~ 358 (471)
.|...=..+.-..++...... .++.. . +...+..-.-.|. .+.-..++.+.... +| +-
T Consensus 347 ~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll 424 (932)
T KOG2053|consen 347 HYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLL 424 (932)
T ss_pred HhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccccccc
Confidence 555555667777777776644 22222 0 1112211111221 22233333222211 12 22
Q ss_pred CChh---------HHHHHHHHHHhcCCHHH---HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 359 PRFA---------HYGCMVDLLGRAGLLEE---ARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 359 p~~~---------~~~~li~~~~~~g~~~~---A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
|+.. +.+.|++.+.+.++... |.-+++.. ...| |..+--.+++.|+-.|-+..|.+.++.+.-.+.
T Consensus 425 ~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 425 PTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 3322 24577888999888764 44455554 4445 455666688999999999999999988754443
Q ss_pred CCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 425 WSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 425 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
..+..=..+...+...|++..+...++.
T Consensus 505 Q~DTlgh~~~~~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 505 QTDTLGHLIFRRAETSGRSSFASNTFNE 532 (932)
T ss_pred hhccchHHHHHHHHhcccchhHHHHHHH
Confidence 3333333344445555666665555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.079 Score=45.19 Aligned_cols=159 Identities=15% Similarity=0.047 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCCC--C--------cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 012101 159 ESGFISLYSKAGDFEKARKVFDENPER--K--------LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSV 228 (471)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~~~~~--~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 228 (471)
++.|.+.+.-..-.++-...++.-..+ . ....+.++..+.-.|.+.-.+..+.+.++...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455665555444444444444432221 1 123456666666677777777777777776555666677777
Q ss_pred HHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHH-----HHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHH
Q 012101 229 TSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSL-----IDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGY 300 (471)
Q Consensus 229 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 300 (471)
++...+.||.+.|...|+.+ .+.....+....+.+ ...|.-.+++..|...|.++.. .|+..-|.-.-+.
T Consensus 219 gr~~MQ~GD~k~a~~yf~~v--ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDV--EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL 296 (366)
T ss_pred HHHHHhcccHHHHHHHHHHH--HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence 77777788888888888776 443333333333322 2345556667777777766654 2333334333333
Q ss_pred HhCCChhHHHHHHHHHHHc
Q 012101 301 AANGLANEALDCFHYMRES 319 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~ 319 (471)
.-.|+..+|++.++.|.+.
T Consensus 297 lYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 297 LYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4456667777777777665
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.006 Score=50.00 Aligned_cols=81 Identities=12% Similarity=-0.069 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC--CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH
Q 012101 86 AFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLP--DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163 (471)
Q Consensus 86 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 163 (471)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4566777777888888888888888887653222 12466777777888888888888888877642 22334444455
Q ss_pred HHHH
Q 012101 164 SLYS 167 (471)
Q Consensus 164 ~~~~ 167 (471)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0041 Score=56.03 Aligned_cols=130 Identities=11% Similarity=-0.018 Sum_probs=92.6
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHH---hHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEM---MKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-------PM-KANVV 394 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~~ 394 (471)
.|..|-..|.-.|+++.|+...+. +.+.+|-+. ....+..+..++.-.|+++.|.+.++.. +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556667899998876654 223334322 2346778888999999999999988875 22 23455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQE----LE--PWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+..+|.++|.-..++++|+.++.+-.. ++ ......+..|..+|...|..++|+.+.+.-.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777888888888899999998876543 32 223357899999999999999999887765543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.016 Score=45.66 Aligned_cols=90 Identities=12% Similarity=-0.003 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMY 269 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (471)
...+...+...|++++|..+|+.+.... +-+..-|..|..++-..|++++|...|... .... +-|+..+-.+..++
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A--~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRA--AQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH--HhcC-CCCchHHHHHHHHH
Confidence 3344444445555555555555554432 223333344444444555555555555554 2222 12333444444455
Q ss_pred HhcCChHHHHHHHH
Q 012101 270 GKCGRMDLAYKVFW 283 (471)
Q Consensus 270 ~~~g~~~~A~~~~~ 283 (471)
...|+.+.|++.|+
T Consensus 114 L~lG~~~~A~~aF~ 127 (157)
T PRK15363 114 LACDNVCYAIKALK 127 (157)
T ss_pred HHcCCHHHHHHHHH
Confidence 55555555555444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0008 Score=45.49 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=37.6
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCL 399 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 399 (471)
..|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4567777777777776542 224555566777777777777777777777 555664444443
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0018 Score=43.86 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=49.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 012101 360 RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG-NVKMGEWVAKHLQELEP 424 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 424 (471)
+...|..+...+...|++++|...|++. ...| +...|..+..++...| ++++|++.+++..+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777888888888888888877 5555 4457777888888888 68888888888887765
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0076 Score=46.14 Aligned_cols=51 Identities=8% Similarity=0.229 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 320 GIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
...|+..+..+++.+|+..+++..|.++.+.+.+.++++.+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356777788888888888888888888888887777777777777777663
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.36 Score=47.53 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHH
Q 012101 266 IDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGK 345 (471)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (471)
+.-+...|+..+|.++-.+..-||...|..-+.+++..+++++-+++-+.++ .+.-|.-.+.+|.+.|+.++|.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHh
Confidence 3334444555555555555555555555555555555555444444333221 1223444444555555555555
Q ss_pred HHHHHh
Q 012101 346 HFFEMM 351 (471)
Q Consensus 346 ~~~~~~ 351 (471)
+++.+.
T Consensus 765 KYiprv 770 (829)
T KOG2280|consen 765 KYIPRV 770 (829)
T ss_pred hhhhcc
Confidence 544444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.26 Score=48.07 Aligned_cols=312 Identities=12% Similarity=0.074 Sum_probs=167.2
Q ss_pred cCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC----cchHHHHHHHHhccCCchHHHH
Q 012101 67 LNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPD----CYTLPIVLKASCQLFALEIGRQ 142 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~ 142 (471)
.|++++|.+++-++..+ | ..|..+.+.|++-...++++. .|-..| ...|+.+-..++....++.|.+
T Consensus 747 ~g~feeaek~yld~drr-D-----LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR-D-----LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchh-h-----hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688888888777643 3 356777788888777766643 111111 3457777777777778888888
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 012101 143 LHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD 222 (471)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 222 (471)
.|..... -...+.++.+..++++-+.+-+.+++. ....-.+..++...|.-++|.+.|-+. + .|
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-- 881 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-- 881 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc--
Confidence 8876421 123667777777888777777777653 334455666777777777776665432 1 12
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHH--------------HHHHHHHHhcCChHHHHHHHHhcCC-
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLML--------------NSLIDMYGKCGRMDLAYKVFWEIDQ- 287 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~A~~~~~~~~~- 287 (471)
...+..|...++|.+|.++-+.. . -|.+.+. .--|..+.+.|+.-+|.+++.+|.+
T Consensus 882 ---kaAv~tCv~LnQW~~avelaq~~--~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 882 ---KAAVHTCVELNQWGEAVELAQRF--Q----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhc--c----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 12344555666666666554432 1 1111110 1124456667777777777777754
Q ss_pred ------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh
Q 012101 288 ------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF 361 (471)
Q Consensus 288 ------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 361 (471)
|-...-...+-+..-..++.++.+-.++...+|...+... | ...+-..++-.+.+..-. | ...
T Consensus 953 e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~---l----les~~l~~~~ri~~n~Wr--g--AEA 1021 (1189)
T KOG2041|consen 953 EQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD---L----LESGLLAEQSRILENTWR--G--AEA 1021 (1189)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh---h----hhhhhhhhHHHHHHhhhh--h--HHH
Confidence 2111111111111222334444444455445554433322 1 122233333333332211 1 222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM----PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
.+|-.|.+-....|..+.|++.--.+ .+-|-...|..+.-+-+....+.-.-+.|-++....
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e 1087 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFE 1087 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhh
Confidence 33444444455678888887764444 455666677766655555555555555555544433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.17 Score=40.85 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCHhhH
Q 012101 219 EPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PNVSSW 293 (471)
Q Consensus 219 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 293 (471)
-|+...-..+..+....|+..+|...|++. ...-+..|..+.-.+.++....+++..|...++++.+ ..+.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qa--lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQA--LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHH--hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 455555556666666666666666666666 5444555566666666666666666666666665544 122233
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRES 319 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~ 319 (471)
-.+...+...|.+.+|..-|+.....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 34455556666666666666666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.33 Score=44.03 Aligned_cols=284 Identities=17% Similarity=0.127 Sum_probs=176.8
Q ss_pred HHHHHHHHHh--cCChhhHHHHhccC---CCCCcchHHHHHH--HHHcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 012101 159 ESGFISLYSK--AGDFEKARKVFDEN---PERKLGSWNAIIA--GLSQDGRAKEAIDMFIGLKKCGFEPDDV--TMVSVT 229 (471)
Q Consensus 159 ~~~ll~~~~~--~g~~~~a~~~~~~~---~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li 229 (471)
|.+|-.++.. .||-..|.++-.+- ...|-...-.++. +-.-.|+++.|.+-|+.|... |... ....|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 4444444433 45666666665432 2334333333333 233468899999999888743 3222 222334
Q ss_pred HHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCHh--hHHHHHHHHHh
Q 012101 230 SACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PNVS--SWTSMIVGYAA 302 (471)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~~ 302 (471)
-..-+.|+.+.|.++-+.. -.. -+.-...+.+.+...|..|+++.|.++++.-.. ++.. .-..|+.+-..
T Consensus 162 leAqr~GareaAr~yAe~A--a~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 162 LEAQRLGAREAARHYAERA--AEK-APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHhcccHHHHHHHHHHH--Hhh-ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 4445778888888887766 221 122356778889999999999999999886543 4432 22233332221
Q ss_pred ---CCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 012101 303 ---NGLANEALDCFHYMRESGIRPNHVTF-VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 303 ---~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
.-+...|...-.+..+ +.||..-- .....++.+.|+..++-.+++.+-+. .|.+..+... .+.+.|+.
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt- 310 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT- 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc-
Confidence 2345556655554443 46665432 23346788999999999999998654 5666554332 33455543
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-cCCChHHHHHHHHH
Q 012101 379 EARAMVEGM----PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA-SRGLWEEVERIRAV 452 (471)
Q Consensus 379 ~A~~~~~~m----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 452 (471)
+..=+++. ..+| +..+...+..+-...|++..|..--+...+..|. .++|..|.+.-. ..|+-.++...+-+
T Consensus 311 -a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 -ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 22223322 4556 4567777888889999999999888888888874 457888888765 45999999999988
Q ss_pred hhcCCC
Q 012101 453 MKHRNL 458 (471)
Q Consensus 453 m~~~~~ 458 (471)
.....-
T Consensus 389 av~APr 394 (531)
T COG3898 389 AVKAPR 394 (531)
T ss_pred HhcCCC
Confidence 776543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.022 Score=50.12 Aligned_cols=102 Identities=9% Similarity=-0.006 Sum_probs=70.9
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCL 399 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l 399 (471)
..|...+....+.|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+ ...|+ ...+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555545668888888888888766421110 235556778888888888888888887 32332 3455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 400 MGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
..++...|+.++|..+++++.+..|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6777788999999999999988888654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.062 Score=45.52 Aligned_cols=49 Identities=20% Similarity=0.123 Sum_probs=35.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChHHHH
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSDG---AYVVLSNIYASRGLWEEVE 447 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~ 447 (471)
+...|.+.|.+..|..-++.+.+.-|.++. ....++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 456678888888888888888888776553 4557778888888877544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.082 Score=39.94 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=85.4
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.-.|..++..+++.+.... .+..-++.+|.-....-+-+-..+.++.+-+-+.+.|-. ....++..|...|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc----
Confidence 4467788888888887764 255667777655555455555566666664333222211 12234444444432
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 381 RAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 381 ~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+....+..+.+....|+-+.-.++...+.+.+..+|.....+..+|.+.|+..++.+++++.-+.|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 45556667788889999999999999988766667888889999999999999999999999888874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.17 Score=43.31 Aligned_cols=136 Identities=15% Similarity=0.060 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH--
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV-- 368 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li-- 368 (471)
...+.++....-.|.+.-....+++.++....-+......+.+.-++.|+.+.|...|++..+..+ ..+....+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 345667777777888999999999999976666778888888889999999999999998755422 33333444333
Q ss_pred ---HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 369 ---DLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 369 ---~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
..|.-.+++..|...+.+. ...| |....|.-.-+..-.|+...|.+.++.+....|.+.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3455667888888888887 2222 455555544455567899999999999998887544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.097 Score=50.38 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=52.5
Q ss_pred CCcchHHHHHHHHHhcCChhhHHHHhccCCC-----------CCcchHHHHHHHHHcCCC--hhHHHHHHHHHHHCCCCC
Q 012101 154 SNEFCESGFISLYSKAGDFEKARKVFDENPE-----------RKLGSWNAIIAGLSQDGR--AKEAIDMFIGLKKCGFEP 220 (471)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p 220 (471)
+....+.+-+..|...|.+++|.++----.. -+...++..-.+|.+..+ +-+.+.-+++++++|-.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 3344455556667788888877665321110 011134444455655544 334455567777888778
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
+.... ...|+-.|.+.+|.++|.+-
T Consensus 634 ~~iLl---A~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 634 NDLLL---ADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hHHHH---HHHHHhhhhHHHHHHHHHHc
Confidence 76543 34455677888888887543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0066 Score=41.58 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=46.5
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 369 DLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
..|.+.+++++|.+.++++ ...| +...|.....++.+.|++++|.+.+++..+..|.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4677788888888888888 5555 4456777778888888888888888888888886654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.02 Score=43.87 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhH--------------HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMK--------------NVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--- 387 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 387 (471)
..++..++.++++.|+.+....+++..= ....+.|+..+..+++.+|+..|++..|.++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3444555555555555555555443321 11233444444455555555555555554444443
Q ss_pred -CCCCCHHHHHHHHH
Q 012101 388 -PMKANVVIWGCLMG 401 (471)
Q Consensus 388 -~~~p~~~~~~~l~~ 401 (471)
+++.+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 33334444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.1 Score=50.40 Aligned_cols=161 Identities=17% Similarity=0.079 Sum_probs=110.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHhcc----CCcHHHHHHHHHHhHHhcCCCCChhH
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRESG-IRPNH-----VTFVGVLSACVH----GGKVQEGKHFFEMMKNVYQIEPRFAH 363 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~ 363 (471)
..++....-.|+-+.+++.+.+-.+.+ ++-.. -.|..++..++. ....+.|.+++..+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 345555556677777777777655432 22111 123333333332 45778899999999876 477766
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH-HH
Q 012101 364 YGCMV-DLLGRAGLLEEARAMVEGM-PMK-----ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVL-SN 435 (471)
Q Consensus 364 ~~~li-~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-~~ 435 (471)
|...- +.+...|++++|.+.|++. ..+ .....+--+...+.-..++++|...|.++.+.+.++..+|..+ +-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 65433 5667789999999999976 111 1334566677788899999999999999999888877777654 44
Q ss_pred HHHcCCCh-------HHHHHHHHHhhcCC
Q 012101 436 IYASRGLW-------EEVERIRAVMKHRN 457 (471)
Q Consensus 436 ~~~~~g~~-------~~A~~~~~~m~~~~ 457 (471)
++...|+. ++|.++|+++....
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 56677888 89999998886543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.54 Score=42.75 Aligned_cols=301 Identities=14% Similarity=0.062 Sum_probs=178.0
Q ss_pred hHHHHHHhcccCCCCchhhHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCcchHHHHHHH--HhccCCchHHHHHHH
Q 012101 70 IYAHIIRTHMLHSYSAAFHWNNIIRLYTR--LEAPKKALDIYIFMSRAGVLPDCYTLPIVLKA--SCQLFALEIGRQLHS 145 (471)
Q Consensus 70 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~ 145 (471)
...+.+.|..-.. | ..|.+|-.++.- .|+-..|.++-.+-.+. +..|......++.+ ..-.|+++.|.+-|+
T Consensus 69 P~t~~Ryfr~rKR--d-rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 69 PYTARRYFRERKR--D-RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred cHHHHHHHHHHHh--h-hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3445555554432 2 457777777765 46777777766655422 45566666666654 455799999999999
Q ss_pred HHHHhCCCCCcch--HHHHHHHHHhcCChhhHHHHhccCCCC--C-cchHHHHHHHHHcCCChhHHHHHHHHHHHCC-CC
Q 012101 146 LAVRLGLESNEFC--ESGFISLYSKAGDFEKARKVFDENPER--K-LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCG-FE 219 (471)
Q Consensus 146 ~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~ 219 (471)
.|.. .|.... ...|.----+.|+.+.|...-+...+. . ...+.+.+...+..|+|+.|+++++.-+... +.
T Consensus 145 AMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 9985 222221 222332334668888888777665432 2 2368889999999999999999998776543 34
Q ss_pred CCHHHH--HHHHHHHc---CcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhh
Q 012101 220 PDDVTM--VSVTSACG---SLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSS 292 (471)
Q Consensus 220 p~~~~~--~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 292 (471)
++..-- ..|+.+-. -..+...|...-.+...++.++.|-. -.-..++.+.|+..++-.+++.+-+ |.+..
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaa---v~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAA---VVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHH---HHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 444322 22332221 12245556655554422333333322 2234567888888888888887765 44443
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRES-GIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
+... .+.+.|+ .+..-+++..+. .++|| ......+..+-...|++..|..--+... ...|....|..|.+.
T Consensus 299 a~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdI 371 (531)
T COG3898 299 ALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADI 371 (531)
T ss_pred HHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHH
Confidence 3322 2334443 333333333221 23444 4455566677777788877776666664 336777777777776
Q ss_pred HHh-cCCHHHHHHHHHhC
Q 012101 371 LGR-AGLLEEARAMVEGM 387 (471)
Q Consensus 371 ~~~-~g~~~~A~~~~~~m 387 (471)
-.. .|+-.++...+-+.
T Consensus 372 eeAetGDqg~vR~wlAqa 389 (531)
T COG3898 372 EEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HhhccCchHHHHHHHHHH
Confidence 544 48888888877776
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.012 Score=54.70 Aligned_cols=99 Identities=10% Similarity=-0.105 Sum_probs=72.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 012101 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVV----IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVL 433 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 433 (471)
.+...++.+..+|.+.|++++|...|++. .+.|+.. +|..+..+|...|+.++|...++++.+... + .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn--~-~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN--L-KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--h-hHHHH
Confidence 34567888889999999999999999986 7778743 588899999999999999999999988742 1 23211
Q ss_pred HH--HHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 434 SN--IYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 434 ~~--~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
.. .+....+.++..++++.+...|...
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 11 1223334557778888888777643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.1 Score=45.61 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhC-CCCC-CHHHH
Q 012101 322 RPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA---GLLEEARAMVEGM-PMKA-NVVIW 396 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m-~~~p-~~~~~ 396 (471)
+-|...|..|-..|...|+++.|..-|....+..| ++...+..+..++... ....++..+|+++ ..+| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 55788999999999999999999999999976544 4445566666655433 2456789999999 6666 55677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 397 GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
..|...+...|++.+|...|+.|.+..|.+. .+..+++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHHH
Confidence 7788899999999999999999999887543 3444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.41 Score=40.51 Aligned_cols=56 Identities=21% Similarity=0.091 Sum_probs=29.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGF--EPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
....+...|++.+|...|+.+...-. +--......++.++.+.|+++.|...++..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33445556667777777766665411 111233445555666666666666666666
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0021 Score=36.22 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=30.0
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH
Q 012101 416 AKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
+++..+.+|.++..|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678889999999999999999999999999863
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0068 Score=42.18 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHLQEL----EPWS---DGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
.+++.+...|...|++++|+..+++..+. ++.+ ..++..++.+|...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555566666666666666666655543 1111 124555666666666666666666554
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.63 Score=41.68 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCcCCHHH---HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-C--CHhhHHHHH
Q 012101 224 TMVSVTSACGSLGDLEL---ALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-P--NVSSWTSMI 297 (471)
Q Consensus 224 ~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li 297 (471)
++..++.++...+..+. |..+++.+ ....+-.+.++-.-+..+.+.++.+.+.+++.+|.. . ....+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l---~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLL---ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHH---HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 34455555555554433 33333333 122222233444445555556666666666665543 1 223333333
Q ss_pred HHHHh--CCChhHHHHHHHHHHHcCCCCCH
Q 012101 298 VGYAA--NGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 298 ~~~~~--~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
..+.. ......+...+..+....+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 33311 12234455555555444444443
|
It is also involved in sporulation []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.01 Score=41.26 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-------P-MKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
.+++.+...|...|++++|+..|++. + ..|+ ..++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57888999999999999999999887 2 2233 45788899999999999999999988653
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0073 Score=36.50 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
++..+..+|...|++++|++.++++.+..|.++..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56778888888999999999999999888888777766543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.018 Score=45.89 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
...++..+...|+++.|...++++....|.+...|..++.+|...|+..+|.+.|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455556666666666666666666666566666666666666666666666555
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.026 Score=51.14 Aligned_cols=258 Identities=14% Similarity=0.098 Sum_probs=154.2
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCc----chHHHHHHHHhccCCchHHHHHHHHH--HH--hCCC-CCcchHHHHHHH
Q 012101 95 LYTRLEAPKKALDIYIFMSRAGVLPDC----YTLPIVLKASCQLFALEIGRQLHSLA--VR--LGLE-SNEFCESGFISL 165 (471)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~ll~~ 165 (471)
-+++.|+....+.+|+...+.|.. |. .+|..|-++|.-.+++++|.+++..= +. .|-+ -.......|-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 478889999999999999888743 43 34666667777778888888875431 11 1100 011222334444
Q ss_pred HHhcCChhhHHHHhcc-CC---C---C--CcchHHHHHHHHHcCCC--------------------hhHHHHHHHHH---
Q 012101 166 YSKAGDFEKARKVFDE-NP---E---R--KLGSWNAIIAGLSQDGR--------------------AKEAIDMFIGL--- 213 (471)
Q Consensus 166 ~~~~g~~~~a~~~~~~-~~---~---~--~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m--- 213 (471)
+--.|.+++|...-.+ +. + + ...++..+...|...|+ ++.|.++|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5555667666544322 10 0 0 11234445555544332 23333443321
Q ss_pred -HHCCCC-CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHhcC--
Q 012101 214 -KKCGFE-PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQ---KSDTLMLNSLIDMYGKCGRMDLAYKVFWEID-- 286 (471)
Q Consensus 214 -~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 286 (471)
.+.|-. .-...|..+-+.|.-.|+++.|...++.-..+...+ ......+..+.+++.-.|+++.|.+.|+.-.
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 111100 112356666667777889999988877553222221 1234567888899999999999998887543
Q ss_pred -----C--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHH----c-CCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 287 -----Q--PNVSSWTSMIVGYAANGLANEALDCFHYMRE----S-GIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 287 -----~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
. ....+..+|...|.-..++++|+.++.+-.. . ...-....+..|..+|...|..++|..+.+...+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 2334566777888888888899888775432 1 1233456788888889888999988877765543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.46 Score=43.48 Aligned_cols=147 Identities=16% Similarity=0.041 Sum_probs=82.4
Q ss_pred HcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHH--HHHhcCChHHHHHHHHhcCCCCHhhHHH-----HHH------
Q 012101 232 CGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLID--MYGKCGRMDLAYKVFWEIDQPNVSSWTS-----MIV------ 298 (471)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----li~------ 298 (471)
+...++.+.|.++--.+ .+... ...+..+++ ++.-.++.+.|...|++....|+....+ +..
T Consensus 179 l~~~~~~~~a~~ea~~i--lkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDI--LKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhcccchhHHHHHHHH--Hhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 35667778877776666 33321 112333332 3345677788888888777633322211 111
Q ss_pred ----HHHhCCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHH--HH
Q 012101 299 ----GYAANGLANEALDCFHYMRES---GIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCM--VD 369 (471)
Q Consensus 299 ----~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l--i~ 369 (471)
-..+.|++..|.+.|.+.... ++.|+...|.....+..+.|+.++|+.-.++..+ +.|. .....+ ..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~s-yikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSS-YIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHH-HHHHHHHHHH
Confidence 234567777777777776643 3445555566666666777777777777776652 2222 122222 23
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 012101 370 LLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m 387 (471)
++...+++++|.+-++..
T Consensus 330 c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444556777777777665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.13 Score=45.47 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=82.1
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHHhcCCHH
Q 012101 303 NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCM----VDLLGRAGLLE 378 (471)
Q Consensus 303 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~ 378 (471)
.|++.+|-..++++.+. .+.|...+...=.+|...|+.+.....++++... ..|+...|..+ .-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45555555666666554 3444455555555666666666666666665432 23444333222 22334566666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 379 EARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW----SDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 379 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
+|++.-++. .+.| |...-.++...+-..|+.+++.++..+-...=.. -...|....-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666665 4444 4445555555555666666666665544321110 012344455555666666666666665
Q ss_pred hhcCCCccCCC
Q 012101 453 MKHRNLAKIPA 463 (471)
Q Consensus 453 m~~~~~~~~~~ 463 (471)
=.-....+..+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 44444444444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.068 Score=46.03 Aligned_cols=110 Identities=16% Similarity=0.243 Sum_probs=82.3
Q ss_pred HHHHHHHhcC--CCCHhhHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC----------
Q 012101 277 LAYKVFWEID--QPNVSSWTSMIVGYAAN-----GLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG---------- 339 (471)
Q Consensus 277 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 339 (471)
-.++.|.... +.|..+|-+++..+... +.++-....++.|.+-|+.-|..+|+.||..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 47778888888777643 567777788889999999999999999999876542
Q ss_pred ------cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH-HHHHHHHhC
Q 012101 340 ------KVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE-EARAMVEGM 387 (471)
Q Consensus 340 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m 387 (471)
+-+-+++++++| +.+|+.||..+-..+++++++.+-+- +..+++--|
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 334578899999 66799999999999999998887643 344444444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.9 Score=43.59 Aligned_cols=113 Identities=10% Similarity=-0.068 Sum_probs=53.6
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 304 GLANEALDCFHYMRESG-IRPNHV--TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.+.+.|..++....... ..+... ....+.......+...++...+...... ..+......-+....+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 44566777776654332 222221 2223322222222244555555544321 12333444445555567777777
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 381 RAMVEGMP--MKANVVIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 381 ~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
...+..|+ ..-...-.-=+.+++...|+.++|...|+++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777761 1111111111344545567777777777765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.027 Score=44.81 Aligned_cols=72 Identities=11% Similarity=-0.020 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH-----hCCCCCcchH
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVR-----LGLESNEFCE 159 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 159 (471)
.....++..+...|++++|..+.+.+.... +.|...|..+|.++...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 356667888889999999999999998875 45788999999999999999999999998753 5888887654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.91 Score=38.59 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHcCCChHHHHHH
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHLQELE----PWSDGAYVVLSNIYASRGLWEEVERI 449 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 449 (471)
|...|-.+....|+..|+..++.--+.+ +.+..+...|+.+|-. |+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHHHH
Confidence 3444444455556666666665544332 2223344455555433 455555444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.31 Score=37.88 Aligned_cols=57 Identities=21% Similarity=0.095 Sum_probs=34.5
Q ss_pred HhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 372 GRAGLLEEARAMVEGM----PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.+.|++++|.+.|+.+ +..| ....--.++.+|.+.++++.|...+++..++.|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3556666666666665 1112 2334555666777777777777777777777766553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.15 Score=46.42 Aligned_cols=95 Identities=17% Similarity=0.048 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-PMK-ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
.++..+.-+|.+.+++..|.+..+.. ... +|...+-.=..+|...|+++.|+..|+++.+..|.|..+-.-++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667778889999999999988887 444 4777888888999999999999999999999999998777777777666
Q ss_pred CCChHH-HHHHHHHhhcC
Q 012101 440 RGLWEE-VERIRAVMKHR 456 (471)
Q Consensus 440 ~g~~~~-A~~~~~~m~~~ 456 (471)
...+.+ ..++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 555444 47788888654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.86 Score=42.03 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCC---Ccc----hHHHHHHHHHc---CCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012101 160 SGFISLYSKAGDFEKARKVFDENPER---KLG----SWNAIIAGLSQ---DGRAKEAIDMFIGLKKCGFEPDDVTMVSVT 229 (471)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 229 (471)
..++-+|-...+++...++.+.+... ++. .-....-++.+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888889888888887654 111 12233344555 789999999998866666678888888777
Q ss_pred HHHcC---------cCCHHHHHHHHHHH
Q 012101 230 SACGS---------LGDLELALQVHKYV 248 (471)
Q Consensus 230 ~~~~~---------~~~~~~a~~~~~~~ 248 (471)
..|-. ....++|...|.+.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 66521 12345566665554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.064 Score=46.19 Aligned_cols=113 Identities=7% Similarity=-0.042 Sum_probs=82.9
Q ss_pred hHHHHHHhcccC-CCCchhhHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC--------
Q 012101 70 IYAHIIRTHMLH-SYSAAFHWNNIIRLYTRL-----EAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF-------- 135 (471)
Q Consensus 70 ~~~a~~~~~~~~-~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-------- 135 (471)
+-..+..|...+ ...|-.+|-+.+..+... +.++-....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 344555666665 346777888888887654 556777788899999999999999999999776543
Q ss_pred --------CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCh-hhHHHHhccC
Q 012101 136 --------ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDF-EKARKVFDEN 182 (471)
Q Consensus 136 --------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 182 (471)
+-+-+..++++|...|+-||..+-..|++++.+.+-. .+..++.-.|
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2245778899999999999999999999998877643 3344443333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.1 Score=38.64 Aligned_cols=58 Identities=19% Similarity=0.132 Sum_probs=44.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSDG---AYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+.+.|.+.|.+..|..-++++.+.-+..+. .+..+.++|...|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 456788889999999889888887655443 4556778888999999888876666544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.7 Score=40.45 Aligned_cols=377 Identities=9% Similarity=0.014 Sum_probs=204.5
Q ss_pred HHHHhcccCCC-CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 012101 73 HIIRTHMLHSY-SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLG 151 (471)
Q Consensus 73 a~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 151 (471)
-+++-+++.+. .|+.+|-.+|.-+...|.+++..+++++|..- .+-=...|..-+.+-...+++..++.+|.+.+...
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 33555666653 47889999999999999999999999999743 23345678878887777789999999999998754
Q ss_pred CCCCcchHHHHHHHHHhcCCh---------hhHHHHhcc--CCCC-CcchHHHHHHH---HHcCCCh------hHHHHHH
Q 012101 152 LESNEFCESGFISLYSKAGDF---------EKARKVFDE--NPER-KLGSWNAIIAG---LSQDGRA------KEAIDMF 210 (471)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~---------~~a~~~~~~--~~~~-~~~~~~~li~~---~~~~~~~------~~a~~~~ 210 (471)
+ +...|...+.-.-+.... -+|.++.-. +-++ ....|+..+.. .-..|.+ +...+.|
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 4 456666666544333321 122222111 1112 22245554443 3333444 4445566
Q ss_pred HHHHHCCCCC------CHHHHHHHHHHHc-------CcCCHHHHHHHHHHHHHhhcCCCC----ChhHH-----------
Q 012101 211 IGLKKCGFEP------DDVTMVSVTSACG-------SLGDLELALQVHKYVFQVKSKQKS----DTLML----------- 262 (471)
Q Consensus 211 ~~m~~~g~~p------~~~~~~~li~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~----------- 262 (471)
.+|..-.+.- |-..|..-++... ...-+-.|.+.++++..+..|... +..++
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 6666432110 1111111111100 011123344444444222222211 11111
Q ss_pred ---------------------------HHHH--------------HHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHH
Q 012101 263 ---------------------------NSLI--------------DMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVG 299 (471)
Q Consensus 263 ---------------------------~~l~--------------~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 299 (471)
+-.+ .-+...++-+.|......-.+ |+... -+-..
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~--~lse~ 342 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTM--FLSEY 342 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhe--eHHHH
Confidence 1111 111233444455554443332 22100 01111
Q ss_pred HHhCCChhHHHHHHHHH-----------------------------HHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHH
Q 012101 300 YAANGLANEALDCFHYM-----------------------------RESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEM 350 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m-----------------------------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (471)
|-..++-+.....|++. .-+...--...|...+..-.+...++.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11112222222211111 0000111223456666666777788899999999
Q ss_pred hHHhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C
Q 012101 351 MKNVYQ-IEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVI-WGCLMGACEKFGNVKMGEWVAKHLQELEP--W 425 (471)
Q Consensus 351 ~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 425 (471)
..+. | +.+++..+++++..++ .|+...|..+|+-- ..-||... -+..+..+...++-+.|..+|+.....-. .
T Consensus 423 ~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 423 LRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred Hhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 9766 5 6788888888888665 56777888888765 44455544 35567777888999999999985543221 1
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 426 SDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
-..+|..++..-..-|+...+..+=++|.+.
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 2347888888888888888777766666543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.062 Score=50.05 Aligned_cols=97 Identities=9% Similarity=-0.017 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 012101 323 PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFA----HYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWG 397 (471)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 397 (471)
.+...++.+..+|.+.|++++|...|++..+. .|+.. .|..+..+|...|+.++|.+.+++. ...+. .|.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~--~f~ 147 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL--KFS 147 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch--hHH
Confidence 35667888888999999999999999998754 56643 5888899999999999999999988 43211 122
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHhcCC
Q 012101 398 CLMG--ACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 398 ~l~~--~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
.+.. .+....+.+...++++.+.+-+.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122233466666666666653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.12 Score=44.54 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSD---GAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
|..++...|+++.|..+|..+.+..|.++ ..+.-|+.+..+.|+.++|..+|+.+.++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45556666666666666666655444332 34555555566666666666666666554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.5 Score=45.10 Aligned_cols=159 Identities=12% Similarity=0.046 Sum_probs=93.8
Q ss_pred HHHHhCCCchHHHHHHH--HHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 012101 94 RLYTRLEAPKKALDIYI--FMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD 171 (471)
Q Consensus 94 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 171 (471)
....-.++++++.++.+ ++.. .+ .....+.++..+-+.|-.+.|.++...-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34455677777666554 1111 11 23446667777777777777776654321 23455677888
Q ss_pred hhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHh
Q 012101 172 FEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQV 251 (471)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 251 (471)
++.|.++.++.. +...|..|.....+.|+++-|.+.|++.. -+..++-.|.-.|+.+...++.+.. .
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a--~ 400 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIA--E 400 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH--H
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHH--H
Confidence 888888887766 45578888888888888888888887764 2455566666677777777776665 4
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 012101 252 KSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID 286 (471)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (471)
..|. ++....++.-.|+.+++.+++.+-.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 4442 4555555556677777776665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.43 Score=42.85 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=9.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 012101 401 GACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~ 421 (471)
-++...|....|.+..++..+
T Consensus 214 ValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred HHHHHhcccccHHHHHHHHHH
Confidence 344445555555554444433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.85 Score=43.61 Aligned_cols=75 Identities=15% Similarity=0.054 Sum_probs=37.1
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
.+.|+++.|.++.++. ++...|..|.+...+.|+++-|++.|.+.+ -|..|+-.|...|+.+.-.++
T Consensus 329 l~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHCT-HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHH
T ss_pred HhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHH
Confidence 3445555555544333 234456666666666666666666666553 133344445555555555555
Q ss_pred HHHHHhcC
Q 012101 416 AKHLQELE 423 (471)
Q Consensus 416 ~~~~~~~~ 423 (471)
.+.....+
T Consensus 396 ~~~a~~~~ 403 (443)
T PF04053_consen 396 AKIAEERG 403 (443)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 54444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.12 Score=47.07 Aligned_cols=67 Identities=12% Similarity=-0.026 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
.++..+..+|.+.+++..|++...+..+++|.|.-....-+.+|...|+++.|+..|+++.+..+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 4567788889999999999999999999999999999999999999999999999999998876543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.4 Score=34.56 Aligned_cols=86 Identities=9% Similarity=0.068 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHh
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSK 168 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 168 (471)
-..+|..+...+.+......++.+...+. .+...++.++..+++.+ .....+.+.. ..+.......+..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 44566666666677777777777766652 45666666777666542 2222333321 1222333335555555
Q ss_pred cCChhhHHHHhccC
Q 012101 169 AGDFEKARKVFDEN 182 (471)
Q Consensus 169 ~g~~~~a~~~~~~~ 182 (471)
.+-++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.29 Score=36.98 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=46.8
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHH---HHHHHHHHHHhcC
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM----PMKANVV---IWGCLMGACEKFG 407 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~---~~~~l~~~~~~~~ 407 (471)
....|+.+.|++.|.+.... .+-....||.-..++.-.|+.++|++-+++. |-+ ... .|..=...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 45556666666666666543 1233445666666666666666666665554 211 111 2222223455566
Q ss_pred CHHHHHHHHHHHHhcCC
Q 012101 408 NVKMGEWVAKHLQELEP 424 (471)
Q Consensus 408 ~~~~a~~~~~~~~~~~~ 424 (471)
+.+.|..-|+..-++|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 66666666666666664
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.5 Score=34.43 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=59.5
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCC
Q 012101 122 YTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDG 201 (471)
Q Consensus 122 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 201 (471)
.....++..+...+.......+++.+...+ +.+...++.++..|++.+. ++..+.++. ..+......+++.|.+.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 345567777777788888889999888876 4677788888888887643 444455442 223334455667777777
Q ss_pred ChhHHHHHHHHH
Q 012101 202 RAKEAIDMFIGL 213 (471)
Q Consensus 202 ~~~~a~~~~~~m 213 (471)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 777777777655
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.024 Score=34.19 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=31.0
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCC
Q 012101 428 GAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPA 463 (471)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 463 (471)
..+..+..+|.+.|++++|+++++++.+..+.....
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a 37 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 468889999999999999999999999987765443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.62 E-value=2.3 Score=36.22 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=9.6
Q ss_pred HHHHHHhCCChhHHHHHHHH
Q 012101 296 MIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~ 315 (471)
.|-.+....++..|...++.
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcc
Confidence 33344444455555555554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.46 Score=44.58 Aligned_cols=160 Identities=10% Similarity=0.081 Sum_probs=104.7
Q ss_pred hhH--HHHHHHHHhCC-----ChhHHHHHHHHHHH-cCCCCCH-HHHHHHHHHhcc---------CCcHHHHHHHHHHhH
Q 012101 291 SSW--TSMIVGYAANG-----LANEALDCFHYMRE-SGIRPNH-VTFVGVLSACVH---------GGKVQEGKHFFEMMK 352 (471)
Q Consensus 291 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~-~~~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 352 (471)
..| ..++.+..... ..+.|..+|.+... ..+.|+- ..|..+..++.. ..+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555554422 35678888998872 2346653 344444333221 234556666666665
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-
Q 012101 353 NVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA- 429 (471)
Q Consensus 353 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 429 (471)
+.. +-|......+..+..-.|+++.|..+|++. ...||. .+|......+.-.|+.++|.+.+++..++.|.-...
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 431 345555666667777888899999999999 777865 466667777788999999999999999999865432
Q ss_pred -HHHHHHHHHcCCChHHHHHHHHHh
Q 012101 430 -YVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 430 -~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
.-..++.|... ..++|.+++-+-
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHhhc
Confidence 22344467765 478888876443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=2.6 Score=35.91 Aligned_cols=196 Identities=16% Similarity=0.080 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCH-hhHHHHHH
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKS-KQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNV-SSWTSMIV 298 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~ 298 (471)
..+......+...+++..+...+... ... ........+......+...+++..+...+..... ++. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKA--LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH--HhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 44444455555555555555555544 221 2222333444444445555555555555554443 111 11222222
Q ss_pred -HHHhCCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 012101 299 -GYAANGLANEALDCFHYMRESGIRP----NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLG 372 (471)
Q Consensus 299 -~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 372 (471)
.+...|+++.+...+.+.... .| ....+......+...++.+.+...+....... .. ....+..+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHH
Confidence 445555555555555555331 22 12222222222334445555555555554321 11 1334444444444
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 373 RAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
..++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..+
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 555555555555444 32332 22233333333344445555555555444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.51 Score=40.90 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=10.2
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHh
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
|..++...|+++.|..+|..+.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHh
Confidence 334444444444444444444333
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.34 E-value=4.4 Score=37.64 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=38.5
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP---NHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
....+|..+++.+.+.|+++.|...+.++...+..+ +......-....-..|+.++|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677777777777777777777776543111 122222233334455677777777766654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.33 E-value=3.5 Score=36.38 Aligned_cols=145 Identities=11% Similarity=0.022 Sum_probs=82.8
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
.....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+.... -.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence 3455677777777777666542 2223444556677777777777777777764321 0011111122334444444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHcCCChHH
Q 012101 379 EARAMVEGMPMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQEL--EPWSDGAYVVLSNIYASRGLWEE 445 (471)
Q Consensus 379 ~A~~~~~~m~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 445 (471)
+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+.+. +..+...-..++..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 4444444553345 5555666777777788888877766665543 34556666777777766664444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.7 Score=33.88 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=24.3
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
+.|+++.|.+.|+.+..++...|-. ..--.++.+|.+.|++++|...+++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4455555555555554443322211 12234445555555555555555554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.07 E-value=5.3 Score=37.48 Aligned_cols=370 Identities=7% Similarity=-0.077 Sum_probs=193.3
Q ss_pred HHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCC-----------------CchhhHHHHHHHHHh
Q 012101 36 TISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSY-----------------SAAFHWNNIIRLYTR 98 (471)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-----------------~~~~~~~~li~~~~~ 98 (471)
.+....+..|..+-.. .+-.|. +-+ .+.+..|.+.|...... +|-.-=+..+..+..
T Consensus 67 ~l~~l~~~~~~s~~l~-LF~~L~--~Y~---~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe 140 (549)
T PF07079_consen 67 QLMELRQQFGKSAYLP-LFKALV--AYK---QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIE 140 (549)
T ss_pred HHHHHHHhcCCchHHH-HHHHHH--HHH---hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHh
Confidence 3344555666555555 555554 233 45677777766543221 122222456788899
Q ss_pred CCCchHHHHHHHHHHHCCC----CCCcchHHHHHHHHhccCCc---------------hHHHHHHHHHHHh------CCC
Q 012101 99 LEAPKKALDIYIFMSRAGV----LPDCYTLPIVLKASCQLFAL---------------EIGRQLHSLAVRL------GLE 153 (471)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~~~~---------------~~a~~~~~~~~~~------~~~ 153 (471)
.|++.++..++++|...=. ..+..+|+.++-.+++.--. +.+.-...++... .+-
T Consensus 141 ~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~ 220 (549)
T PF07079_consen 141 TGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFI 220 (549)
T ss_pred cCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhC
Confidence 9999999999999866433 47888998876666554111 1111111111110 011
Q ss_pred CCcchHHHHHHHHHhcC-----ChhhHHHHhccC-CCCCcc-hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC----CH
Q 012101 154 SNEFCESGFISLYSKAG-----DFEKARKVFDEN-PERKLG-SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEP----DD 222 (471)
Q Consensus 154 ~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~ 222 (471)
|.......++....-.. -+=.+.+.|+.- ..|+-. .-..+...+.+ +.+++..+-+.+....+.+ =.
T Consensus 221 peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li 298 (549)
T PF07079_consen 221 PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELI 298 (549)
T ss_pred cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11111111211111000 011111122110 011111 22333333433 6677777766665543222 23
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHH-------HHHHHHHHhc----CChHHHHHHHHhcCCCCHh
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLML-------NSLIDMYGKC----GRMDLAYKVFWEIDQPNVS 291 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~ 291 (471)
.+|..++....+.++...|.+.+.-+.. ..|+..+- ..+-+..+.. -+..+=..+++.+..-|+.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~----ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKI----LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh----cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 5788888888999999999998886622 23332221 1222333311 1223334445544443321
Q ss_pred ---hHHHHH---HHHHhCCC-hhHHHHHHHHHHHcCCCCCHHHHHHH----HHHhcc---CCcHHHHHHHHHHhHHhcCC
Q 012101 292 ---SWTSMI---VGYAANGL-ANEALDCFHYMRESGIRPNHVTFVGV----LSACVH---GGKVQEGKHFFEMMKNVYQI 357 (471)
Q Consensus 292 ---~~~~li---~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~~---~~~~~~a~~~~~~~~~~~~~ 357 (471)
.-..|+ .-+-+.|. -++|+++++...+-. +-|..+-+.+ =.+|.+ ...+.+-.++-+-+ +..|+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi-~e~gl 452 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI-TEVGL 452 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCC
Confidence 112222 23445565 788999998887641 2233332222 223322 23344444444444 33487
Q ss_pred CCCh----hHHHHHHHH--HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 358 EPRF----AHYGCMVDL--LGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 358 ~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
.|-. ..-|.|.++ +...|++.++.-.-.-. .+.|+..+|..+.-+.....++++|..++..+
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 7643 334444443 45678888887665555 88999999999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.92 E-value=10 Score=40.20 Aligned_cols=53 Identities=8% Similarity=-0.008 Sum_probs=26.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 367 MVDLLGRAGLLEEARAMVEGMPMKANVVI--WGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
-+.+|..+|++.+|+.+-.++...-|... -..|..-+...++.-+|-++..+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 34455556666666666555532223322 134555555566655555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.4 Score=38.21 Aligned_cols=82 Identities=11% Similarity=-0.016 Sum_probs=39.5
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhcc---CCCCCcchHHHHHHHHHcCCChhHHHHH
Q 012101 133 QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDE---NPERKLGSWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~ 209 (471)
..|++++|..+|.-+...+ +-+...+..|..++-..+++++|...|.. +...|...+-....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 3455555555555554433 22333344444455555555555555533 2223333444445555555555555555
Q ss_pred HHHHHH
Q 012101 210 FIGLKK 215 (471)
Q Consensus 210 ~~~m~~ 215 (471)
|+...+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 555544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=5 Score=35.92 Aligned_cols=135 Identities=7% Similarity=-0.071 Sum_probs=56.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANG-LANEALDCFHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
+..+-...+.++.+.++.+....+..-+..+|...-...+.++.+.+ +...+...+..+.. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 33444444555555554333333333333344443333444444332 12344444444442 334445555555555
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGAC 403 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~ 403 (471)
+.++. .+...+-...+. ++ .....+.+++..|.. +|...+..+ .-.||..+-...+.+|
T Consensus 218 ~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 218 LRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred ccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 55553 233332222221 11 122444555555554 344444444 3334444444444333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.27 Score=27.28 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
.|..+..++...|++++|.+.+++..++.|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666666677777777777776666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.58 E-value=5.3 Score=40.40 Aligned_cols=177 Identities=12% Similarity=0.086 Sum_probs=112.9
Q ss_pred HHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCHhhHHHHHHHH
Q 012101 224 TMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD--TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PNVSSWTSMIVGY 300 (471)
Q Consensus 224 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~ 300 (471)
+...-+....+..-++.|..+-+.- +..++ ........+.+.+.|++++|...|-+-.. .++ ..+|.-|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kf 407 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKF 407 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHh
Confidence 3445566667777777777765432 32222 22333445556678889888887766543 121 1245666
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHHhcCCHHH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIE-PRFAHYGCMVDLLGRAGLLEE 379 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~ 379 (471)
....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... . |.. -| ....+..+.+.+-.++
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRKSNYLDE 481 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHHhChHHH
Confidence 6777777888888888888865 34444678888999888888877777663 2 221 12 3446677777788888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 380 ARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 380 A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
|..+-...+. +......++ -..+++++|.++++.+
T Consensus 482 a~~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 8777776654 344444443 4567888888887654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.72 Score=36.00 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=46.2
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 362 AHYGCMVDLL---GRAGLLEEARAMVEGM-PMKANV---VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 362 ~~~~~li~~~---~~~g~~~~A~~~~~~m-~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
.+.+.||+.. ...++++++..+++.| -..|+. .++.. ..+...|++.+|.++|+++.+..+..+..-..+.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 3444555433 3477888888888877 344433 33333 3456778888888888887776654443333444
Q ss_pred HHHHcCCC
Q 012101 435 NIYASRGL 442 (471)
Q Consensus 435 ~~~~~~g~ 442 (471)
.++.-.|+
T Consensus 86 ~CL~al~D 93 (153)
T TIGR02561 86 LCLNAKGD 93 (153)
T ss_pred HHHHhcCC
Confidence 44444444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.49 E-value=7.9 Score=37.66 Aligned_cols=125 Identities=14% Similarity=0.221 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 012101 88 HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY-TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLY 166 (471)
Q Consensus 88 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 166 (471)
.|..+|.---.....+.+..++..+... .|-.. -|.-....=.+.|..+.+.++|++.+. |++.+...|...+..+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 4555554444444444555555555432 23322 122223333455666666666666655 4555555555554433
Q ss_pred H-hcCChhhHHHHhccCCC---C---CcchHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012101 167 S-KAGDFEKARKVFDENPE---R---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKK 215 (471)
Q Consensus 167 ~-~~g~~~~a~~~~~~~~~---~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 215 (471)
. ..|+.+.....|+.... . ....|...|.--...+++.....+|++..+
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 3 23455555555554332 1 223466666666666677777777776664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.21 Score=27.84 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
.+|..+..+|...|++++|+..|++..++.|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666666777777777777777777766653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.23 E-value=4.4 Score=33.96 Aligned_cols=159 Identities=13% Similarity=0.112 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
..||.+.--+...|+++.|.+.|+...+....-+-...|.-|. +-..|++.-|.+-+-..-+...-.|-...|--++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 4566666666667777777777776666532222222222222 23346666666655555443222232223322221
Q ss_pred HHhcCCHHHHHHHH-HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHcCC
Q 012101 371 LGRAGLLEEARAMV-EGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS-------DGAYVVLSNIYASRG 441 (471)
Q Consensus 371 ~~~~g~~~~A~~~~-~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 441 (471)
..-++.+|..-+ ++. +. |..-|...|-.+.- |++. .+.+++++..-..++ ..+|.-|+.-|...|
T Consensus 178 --~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --hhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 233455554433 333 32 22222222222111 1111 122333333222221 135666777777777
Q ss_pred ChHHHHHHHHHhhcCC
Q 012101 442 LWEEVERIRAVMKHRN 457 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~~ 457 (471)
+.++|..+|+-....+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 7777777777665443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.22 E-value=8.7 Score=37.35 Aligned_cols=157 Identities=15% Similarity=0.051 Sum_probs=91.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCc-----chHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcch
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAG-VLPDC-----YTLPIVLKASCQ----LFALEIGRQLHSLAVRLGLESNEFC 158 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (471)
...++....-.||-+.+++++.+..+.+ +.-.. -.|+.++..++. ..+.+.+.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4455666666788888888887765532 22111 123344433332 34557788888887764 345444
Q ss_pred HHH-HHHHHHhcCChhhHHHHhccCCCC-------CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012101 159 ESG-FISLYSKAGDFEKARKVFDENPER-------KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTS 230 (471)
Q Consensus 159 ~~~-ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 230 (471)
|.. -.+.+...|++++|.+.|+..... ....+-.+.-.+.-..+|++|.+.|..+.+.. ..+..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 432 235566678888888888764321 11234555556667778888888888887753 334444544444
Q ss_pred HH-cCcCCH-------HHHHHHHHHH
Q 012101 231 AC-GSLGDL-------ELALQVHKYV 248 (471)
Q Consensus 231 ~~-~~~~~~-------~~a~~~~~~~ 248 (471)
+| ...++. ++|.+++.++
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHH
Confidence 33 345555 6666776665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.8 Score=34.75 Aligned_cols=21 Identities=29% Similarity=0.093 Sum_probs=8.3
Q ss_pred HHHHHHhcCChHHHHHHHHhc
Q 012101 265 LIDMYGKCGRMDLAYKVFWEI 285 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~ 285 (471)
|.-+-.+.|++.+|.+.|..+
T Consensus 173 LglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HhHHHHhccchHHHHHHHHHH
Confidence 333333444444444444333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.12 E-value=14 Score=39.28 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=20.6
Q ss_pred CCCcchHHHHHHHHHhcC--ChhhHHHHhccCC
Q 012101 153 ESNEFCESGFISLYSKAG--DFEKARKVFDENP 183 (471)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~ 183 (471)
.|+ .....+|.+|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 444 45566778888887 6777777766655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.97 E-value=5.1 Score=33.97 Aligned_cols=196 Identities=17% Similarity=0.071 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcC-----CCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 259 TLMLNSLIDMYGKCGRMDLAYKVFWEID-----QPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
...+......+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555555666666666665555443 13334444555555555666666666666655432221 11111112
Q ss_pred -HhccCCcHHHHHHHHHHhHHhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 012101 334 -ACVHGGKVQEGKHFFEMMKNVYQI--EPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN--VVIWGCLMGACEKFG 407 (471)
Q Consensus 334 -~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~l~~~~~~~~ 407 (471)
.+...|+++.|...+...... .. ......+......+...++.+.+...+... ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 455666666666666666321 10 012223333333355566666666666665 33333 455555666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 408 NVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 408 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+++.+...+.......+.....+..+...+...|.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666655543333444444444555566666666555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.94 E-value=3.3 Score=31.67 Aligned_cols=60 Identities=10% Similarity=0.095 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHh
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
...+......|+-|+-.++++++.+. -.+++.....+..+|.+.|+..++.+++.++.+.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34455666677777777777766543 2556666666677777777777777777776554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.2 Score=28.55 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=18.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677888888888888888888743
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=7.7 Score=36.78 Aligned_cols=152 Identities=11% Similarity=0.028 Sum_probs=100.7
Q ss_pred HHHHHHHHhc-----CChHHHHHHHHhcC---CCC---HhhHHHHHHHHHhC---------CChhHHHHHHHHHHHcCCC
Q 012101 263 NSLIDMYGKC-----GRMDLAYKVFWEID---QPN---VSSWTSMIVGYAAN---------GLANEALDCFHYMRESGIR 322 (471)
Q Consensus 263 ~~l~~~~~~~-----g~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~ 322 (471)
..++.+.... ...+.|..+|.+.. +.| ...|..+..++... ....+|.++-++..+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 4455554432 13567888999887 433 45666665555432 23456777777777765 4
Q ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH---HHH
Q 012101 323 PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFA-HYGCMVDLLGRAGLLEEARAMVEGM-PMKANVV---IWG 397 (471)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~---~~~ 397 (471)
-|......+..+....++++.|...|++... +.||.. .|........-.|+.++|.+.+++. ...|... ...
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 5677777777777778889999999999974 467653 4555555667799999999999995 6666543 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 012101 398 CLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
..+..|+.. ..+.|..++-+-
T Consensus 413 ~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 413 ECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHcCC-chhhhHHHHhhc
Confidence 344456554 567777776543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.70 E-value=1 Score=35.80 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=52.8
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 362 AHYGCMVDLL---GRAGLLEEARAMVEGM-PMKANVVIWGCL-MGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 362 ~~~~~li~~~---~~~g~~~~A~~~~~~m-~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
.+.+.||..+ .+.++.+++..++..+ -.+|.......+ ...+...|++.+|.++|+.+.+..+..+..-..+..+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3455555543 4678889999998888 455554433322 2456788899999999999877776655444455555
Q ss_pred HHcCCC
Q 012101 437 YASRGL 442 (471)
Q Consensus 437 ~~~~g~ 442 (471)
+...|+
T Consensus 88 L~~~~D 93 (160)
T PF09613_consen 88 LYALGD 93 (160)
T ss_pred HHHcCC
Confidence 555554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.52 E-value=4.1 Score=32.93 Aligned_cols=130 Identities=9% Similarity=0.046 Sum_probs=65.9
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcC--ChhhHHHHhccCCC
Q 012101 107 DIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAG--DFEKARKVFDENPE 184 (471)
Q Consensus 107 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~ 184 (471)
+.+..+.+.|++|+...+..+++.+.+.|.+....+ ++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 444555566777777777777777777776554433 334454444443332222221111 1233444444433
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 185 RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 185 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
..+..++..+...|++-+|+++.+...... .+ ....++.+..+.+|...-..+++-.
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~---~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SV---PARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cC---CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 134556667777777777777776642211 11 2233455555555554444444433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.52 Score=38.67 Aligned_cols=99 Identities=13% Similarity=0.022 Sum_probs=55.2
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPR---FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNV 409 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~ 409 (471)
+.+.|++++|..-|....+...-.+. ...|..-.-++.+.+.++.|.+-.... .+.|+. ..+..=..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 56677788887777777654211111 122333334556666666666655544 444532 2333334566667777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHH
Q 012101 410 KMGEWVAKHLQELEPWSDGAYVVL 433 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~~l 433 (471)
+.|+.-++++.+..|.....-...
T Consensus 185 eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHH
Confidence 777777777777776554333333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.44 E-value=6 Score=37.69 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKA---NVVIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
.+..+..+.|+.++|.+.+++| ...| +......|+.++...+.+.++..++.+..+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 4555566677777777777776 2222 22355667777777777777777777765443
|
The molecular function of this protein is uncertain. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.079 Score=41.97 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=37.3
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHH
Q 012101 128 LKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAI 207 (471)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 207 (471)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 444444455555555555555444344445555555555555555555555553222 11223344444444444444
Q ss_pred HHHHH
Q 012101 208 DMFIG 212 (471)
Q Consensus 208 ~~~~~ 212 (471)
-++.+
T Consensus 91 ~Ly~~ 95 (143)
T PF00637_consen 91 YLYSK 95 (143)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 44433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.34 E-value=9.4 Score=35.44 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW----SDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
...+|..+...+.+.|.++.|...+.++.+.++. .+......+..+...|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567888888899999999999888888875521 3445666777888888889999888887763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.20 E-value=14 Score=37.23 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHH-HhC----------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 012101 364 YGCMVDLLGRAGLLEEARAMV-EGM----------PMKANVVIWGCLMGACEKFGNVKMG 412 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~-~~m----------~~~p~~~~~~~l~~~~~~~~~~~~a 412 (471)
|.-++..+++.|+..+|+.+. +++ ..+-|...|..||..+...-.+-.+
T Consensus 650 ~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldkPe~~~~ 709 (846)
T KOG2066|consen 650 YEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDKPEFIKA 709 (846)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcCcHHHHH
Confidence 444555555666555555542 221 2345777888888777665544433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.20 E-value=5.2 Score=36.07 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc--CC----cHHHHHHHHHHhHHhcCCC--CChhHHHHHHHHHHhcCCH
Q 012101 306 ANEALDCFHYMRESGIRPNHVTFVGVLSACVH--GG----KVQEGKHFFEMMKNVYQIE--PRFAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~ 377 (471)
+++...+++.|.+.|+.-+..+|.+....... .. ...+|..+++.|++.|.+- ++...+..++-. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788888888888887777653333222 22 3567889999998876653 333444444332 34443
Q ss_pred H----HHHHHHHhC---CCCC-CH-HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 378 E----EARAMVEGM---PMKA-NV-VIWGCLMGACEKFGN--VKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 378 ~----~A~~~~~~m---~~~p-~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
+ .++..++.+ ++.. |. .....++..+-...+ +.++.++++.+.+.+..-...+...+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3 344455554 4443 33 344444433332222 447788888888877443333333333443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.77 Score=40.43 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
.++..++..+...|+.+.+.+.++++ ...| +...|..++.+|.+.|+...|+..++++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45677888888888888888888888 5555 778888888888888888888888888876
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.38 Score=27.31 Aligned_cols=28 Identities=11% Similarity=-0.046 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
+|..|...|.+.|++++|++++++...+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888999999999999999986543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.01 E-value=7.5 Score=33.63 Aligned_cols=62 Identities=18% Similarity=0.010 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKA----NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
.+.+.|.+.|.+..|..-+++| .--| ....+-.+..+|...|-.++|...-+-+....|+++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3456788888888888777777 1122 234666777888888888888887766665556544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.75 E-value=9.6 Score=34.72 Aligned_cols=126 Identities=15% Similarity=0.060 Sum_probs=62.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH---hcCCCCChhHHHH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESG-----IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN---VYQIEPRFAHYGC 366 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~p~~~~~~~ 366 (471)
++..++...+.++++++.|+...+-- .......+..|-..|.+..++++|.-+..+..+ .+++..-..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34455555566666666666544321 111223556666666666666666555444322 1222211112222
Q ss_pred -----HHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012101 367 -----MVDLLGRAGLLEEARAMVEGM-------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQ 420 (471)
Q Consensus 367 -----li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 420 (471)
|.-++...|.+.+|.+..++. |.+| .......+.+.|...|+.+.|..-++...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 223455556555555554443 3333 22344556666777777776665555543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.61 Score=35.33 Aligned_cols=91 Identities=14% Similarity=0.008 Sum_probs=75.9
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCc---hHHHHHHHHHcCCC
Q 012101 369 DLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELE-PWSDG---AYVVLSNIYASRGL 442 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~g~ 442 (471)
-++...|+.+.|++.|... .+-| ....||.=.+++.-.|+.++|..-+++..++. +.... .|..-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3677899999999999988 4444 67899999999999999999999999999875 43322 46667778999999
Q ss_pred hHHHHHHHHHhhcCCCc
Q 012101 443 WEEVERIRAVMKHRNLA 459 (471)
Q Consensus 443 ~~~A~~~~~~m~~~~~~ 459 (471)
-+.|..=|+...+-|.+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 99999999998887653
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.53 E-value=5.2 Score=36.05 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC--cC----CHHHHHHHHHHH
Q 012101 203 AKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS--LG----DLELALQVHKYV 248 (471)
Q Consensus 203 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~~ 248 (471)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....+..+|+.|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~m 129 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEM 129 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 45567788889999998888877764443332 22 245567777777
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.46 E-value=10 Score=33.98 Aligned_cols=158 Identities=9% Similarity=-0.002 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012101 292 SWTSMIVGYAANGLAN---EALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV 368 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 368 (471)
+...++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+++..|..... -....+..++
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHHHHH
Confidence 4556667777666543 455566666544211 234454556666667788888888888866422 1223344444
Q ss_pred HHH---HhcCCHHHHHHHHHhC---CCCCCHH-HHHH-HH---HHHHhcCC------HHHHHHHHHHHHhcC--CCCCch
Q 012101 369 DLL---GRAGLLEEARAMVEGM---PMKANVV-IWGC-LM---GACEKFGN------VKMGEWVAKHLQELE--PWSDGA 429 (471)
Q Consensus 369 ~~~---~~~g~~~~A~~~~~~m---~~~p~~~-~~~~-l~---~~~~~~~~------~~~a~~~~~~~~~~~--~~~~~~ 429 (471)
..+ .... ...|...+..+ ...|... .... ++ ....+.++ ++....++..+.+.. +.++.+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 443 3333 33444444444 3333322 1111 11 11122212 444455555443322 222222
Q ss_pred ---HHH----HHHHHHcCCChHHHHHHHHHh
Q 012101 430 ---YVV----LSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 430 ---~~~----l~~~~~~~g~~~~A~~~~~~m 453 (471)
..+ -+....+.++|++|.++++-.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 112 233467889999999998854
|
It is also involved in sporulation []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.30 E-value=18 Score=36.62 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCc-------hHHHHHHHHHHHhC
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFAL-------EIGRQLHSLAVRLG 151 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~ 151 (471)
..| .+|--|.|.|++++|.++..+.... .......+...+..+....+- +....-|++..+..
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 344 4677789999999999999665543 455677888888888775332 45555666655543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.28 E-value=6.8 Score=31.68 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=52.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHh
Q 012101 207 IDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG--RMDLAYKVFWE 284 (471)
Q Consensus 207 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~ 284 (471)
+++++.+.+.|++|+...+..++..+.+.|++.....+ +..++-+|.......+-.+.... -..-|.+.+.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql------lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL------LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH------HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH
Confidence 34555556667777777777777777777776555444 33344444433333332221111 02223333333
Q ss_pred cCCCCHhhHHHHHHHHHhCCChhHHHHHHHHH
Q 012101 285 IDQPNVSSWTSMIVGYAANGLANEALDCFHYM 316 (471)
Q Consensus 285 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 316 (471)
+. ..+..++..+...|++-+|.++.+..
T Consensus 88 L~----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LG----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hh----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 32 23444555666677777777766553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.28 E-value=19 Score=36.77 Aligned_cols=174 Identities=18% Similarity=0.070 Sum_probs=105.3
Q ss_pred HHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHH----HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 012101 55 ATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIR----LYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKA 130 (471)
Q Consensus 55 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 130 (471)
..-|+.+.+ ..-+.-|..+-+.....+ ..-..+.. -+.+.|++++|...|-+-... +.| ..+|.-
T Consensus 338 e~kL~iL~k---K~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFK---KNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHH---hhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 344555555 455777777766655322 23333333 345679999998888776532 222 235566
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcc-hHHHHHHHHHcCCChhHHHHH
Q 012101 131 SCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLG-SWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~ 209 (471)
+.....+..-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+........ -....+..+.+.+-.++|.-+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 66666667777778888888854 3344467889999999999999888877732222 245566666666666666655
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 210 FIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 210 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
-..... .......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 444432 222222322 2456667776666544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.26 E-value=3.3 Score=29.93 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=47.6
Q ss_pred HHHHHhCCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 297 IVGYAANGL--ANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 297 i~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
-..|....+ .-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.+.|-. ...|..+++
T Consensus 15 y~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 15 YEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 334444333 33566677777777889999999999999999999999999999997765533 336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.8 Score=37.53 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=88.0
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH----HHHHHhcCCHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCL----MGACEKFGNVK 410 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l----~~~~~~~~~~~ 410 (471)
-.|...+|-..++++..++ +.|...+..--++|.-.|+.+.-...+++. .-.||...|..+ .-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3577778888888887753 566667777778899999999988888888 335666444333 23445889999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 411 MGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
+|++.-++..++++.+.-....+.-++.-.|+.+++.+...+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999877666667777788889999999887653
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.31 Score=38.55 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=48.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 012101 92 IIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD 171 (471)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 171 (471)
+|..+.+.+.++.....++.+...+...+....+.++..|++.++.+....+++. .+..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5666666677777777777777655555566667777777777666666666551 111333445555555555
Q ss_pred hhhHHHHhccC
Q 012101 172 FEKARKVFDEN 182 (471)
Q Consensus 172 ~~~a~~~~~~~ 182 (471)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.5 Score=36.02 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc-------
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPD--CYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEF------- 157 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 157 (471)
.++..+...|.+.|+.+.|++.|.++.+....+. ...+..+|+.....+++..+.....+....--.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4688899999999999999999999988654443 4556778888888899998888888776532221111
Q ss_pred hHHHHHHHHHhcCChhhHHHHhccC
Q 012101 158 CESGFISLYSKAGDFEKARKVFDEN 182 (471)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~~ 182 (471)
+|..|. +...+++..|-+.|-..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 122221 22346677766666443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.02 E-value=3.4 Score=34.27 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCC-CCChhHHHHHHHHHHhcCChHHHH
Q 012101 202 RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQ-KSDTLMLNSLIDMYGKCGRMDLAY 279 (471)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 279 (471)
.-+.|.+.|-.+...+.--++.....+.. |....+.+++..++....+...+- .+|+.++.+|.+.|.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45677888878877765544444444444 444677888888887775444444 778888888888888888888774
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.67 E-value=38 Score=39.18 Aligned_cols=313 Identities=12% Similarity=0.009 Sum_probs=163.6
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCC--CCCcchHHHHHHHHHhcCChhhHHHHhcc-CCCCCcchHHHHHHHHHcCCCh
Q 012101 127 VLKASCQLFALEIGRQLHSLAVRLGL--ESNEFCESGFISLYSKAGDFEKARKVFDE-NPERKLGSWNAIIAGLSQDGRA 203 (471)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~~ 203 (471)
+..+--+.+.+..|...+++-..... .-....|..+...|+.-++.|...-+... ...+ +...-|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccH
Confidence 33455566777777777777311000 01122344455588888888887777653 3332 233445556677999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHH-HHHHHHhcCChHHHHHHH
Q 012101 204 KEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNS-LIDMYGKCGRMDLAYKVF 282 (471)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~ 282 (471)
..|...|+.+.+.+ ++...+++-++......+.++.+....+.. .. ...+....++. =+.+--+.++++..+...
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~--~~-~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL--II-NRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch--hh-ccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999998764 334667787777777778777776655443 11 12222222222 233445667777666655
Q ss_pred HhcCCCCHhhHHHH--HHHHHhC--CChhHHHHHHHHHHHcCCCC---------CHHHHHHHHHHhccCCcHHHHHHHHH
Q 012101 283 WEIDQPNVSSWTSM--IVGYAAN--GLANEALDCFHYMRESGIRP---------NHVTFVGVLSACVHGGKVQEGKHFFE 349 (471)
Q Consensus 283 ~~~~~~~~~~~~~l--i~~~~~~--~~~~~a~~~~~~m~~~~~~p---------~~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (471)
. ..+..+|... .....+. .+.-.-.+.++-+++.-+.| =...|..++....-. +.+.-.+
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~--- 1614 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIE--- 1614 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHH---
Confidence 5 3444455443 2222222 12212223333333321111 011222232221110 0111111
Q ss_pred HhHHhcCCCCChh------HHHHHH---HHHHhcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHH
Q 012101 350 MMKNVYQIEPRFA------HYGCMV---DLLGRAGLLEEARA-MVEGMPMKA-----NVVIWGCLMGACEKFGNVKMGEW 414 (471)
Q Consensus 350 ~~~~~~~~~p~~~------~~~~li---~~~~~~g~~~~A~~-~~~~m~~~p-----~~~~~~~l~~~~~~~~~~~~a~~ 414 (471)
...+..++.. .|..-+ +.+.+...+=-|.+ .+......| -..+|-...+...+.|.++.|..
T Consensus 1615 ---~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1615 ---ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred ---HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1112222221 122111 11222111111111 111111122 23578888888999999999988
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 415 VAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
.+-.+.+.. .+..+.-.+..+...|+...|+.++++..+...
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 887777766 356788888999999999999999998876554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.63 E-value=3.2 Score=36.68 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHH
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYM 316 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 316 (471)
++..++..+...|+++.+...++++.. -+...|..++.+|.+.|+...|+..|+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 344444444444444444444444433 22334444444444444444444444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.61 E-value=16 Score=34.92 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=26.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhccCCcHHHHHHHHHHh
Q 012101 296 MIVGYAANGLANEALDCFHYMRESGIR-PNHVTFVGVLSACVHGGKVQEGKHFFEMM 351 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (471)
+..+.-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444555555555555555433111 12223444555555555555555555554
|
The molecular function of this protein is uncertain. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.33 E-value=24 Score=36.37 Aligned_cols=190 Identities=15% Similarity=0.117 Sum_probs=99.8
Q ss_pred HhcCChHHHHHHHHhcCC----CCH-------hhHHHHHHH-HHhCCChhHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 012101 270 GKCGRMDLAYKVFWEIDQ----PNV-------SSWTSMIVG-YAANGLANEALDCFHYMRES----GIRPNHVTFVGVLS 333 (471)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~----~~~-------~~~~~li~~-~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~ 333 (471)
....++++|..+..++.. |+. ..|+.+-.. ....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456778888877766542 222 244444332 23467788888877766554 12334455566666
Q ss_pred HhccCCcHHHHHHHHHHhHHhcCCCCChhH---HHHHHH--HHHhcCCHH--HHHHHHHhC-----CCCC----CHHHHH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQIEPRFAH---YGCMVD--LLGRAGLLE--EARAMVEGM-----PMKA----NVVIWG 397 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~--~~~~~g~~~--~A~~~~~~m-----~~~p----~~~~~~ 397 (471)
+..-.|++++|..+.....+. .-.-+... |..+.. .+...|... +.+..|... +-+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 677778888888777666433 11223322 333322 344556322 222223322 2222 223455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCc---hHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCC
Q 012101 398 CLMGACEKFGNVKMGEWVAKHLQELE----PWSDG---AYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPA 463 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 463 (471)
.++.++.+ ++.+..-.....+.+ +.+.. .+..|+..+...|+.++|...+.++..-.....+.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 55555555 444443333333322 22211 22356777788888888888888876654443333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.25 E-value=8.1 Score=30.85 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHhC
Q 012101 371 LGRAGLLEEARAMVEGM 387 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m 387 (471)
+.+.|++.+|..+|+++
T Consensus 54 ~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 54 HIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 34555555555555555
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.22 E-value=5.9 Score=32.58 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD--VTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
+..+...|.+.|+.++|++.|.++.+....+.. ..+..+|....-.+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444444455555555555555554443222221 22334444444445555554444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=90.13 E-value=18 Score=34.59 Aligned_cols=54 Identities=7% Similarity=-0.027 Sum_probs=25.2
Q ss_pred HHHhcCChHHHHHHHHhcCCCCHh---hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQPNVS---SWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
..+..|+.+-+..+++.-..++.. ...+.+...+..|+.+ +.+-+.+.|..++.
T Consensus 174 ~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 174 IAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 344556666666555544433321 1123333334555543 33444456666553
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.08 E-value=23 Score=35.88 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=93.1
Q ss_pred hcCChHHHHHHHHhcCC-----CC-----HhhHHHHHH--HHHhCCChhHHHHHHH--------HHHHcCCCCCHHHHHH
Q 012101 271 KCGRMDLAYKVFWEIDQ-----PN-----VSSWTSMIV--GYAANGLANEALDCFH--------YMRESGIRPNHVTFVG 330 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~--~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~ 330 (471)
-.+++..|...+..+.+ |+ ...+..++. .+...|+.+.|...|. .....+...+..++..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 46788888888887764 22 122333333 3345699999999997 4444555545444433
Q ss_pred HH--HHh--ccCCcHHH--HHHHHHHhHHhcCCCCC--hhHHHHH-HHHHHhcC---------CHHHHHHHH-HhCCCCC
Q 012101 331 VL--SAC--VHGGKVQE--GKHFFEMMKNVYQIEPR--FAHYGCM-VDLLGRAG---------LLEEARAMV-EGMPMKA 391 (471)
Q Consensus 331 ll--~~~--~~~~~~~~--a~~~~~~~~~~~~~~p~--~~~~~~l-i~~~~~~g---------~~~~A~~~~-~~m~~~p 391 (471)
+= ..+ ......++ +.++++.+.....-.|+ ..++..+ +.++.... .+.++++.. +..+..-
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 11 111 12222333 77777777543222333 2333333 33332111 223344444 3332111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHH-----HHHHHHHcCCChHHHHHHHHHhh
Q 012101 392 -NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW----SDGAYV-----VLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 392 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
-..+++.+...+. .|+..+.............. ....|. .+.+.|...|+.++|.....+..
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1223343333344 68887766655554433221 122442 44555888999999999887654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.77 Score=25.40 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
+|..+...|...|++++|...|++..++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555666666666666666666666554
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.33 E-value=15 Score=32.58 Aligned_cols=117 Identities=9% Similarity=0.038 Sum_probs=66.4
Q ss_pred HHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CH--hhHHHHHHHHHhCCCh
Q 012101 231 ACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP--NV--SSWTSMIVGYAANGLA 306 (471)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~li~~~~~~~~~ 306 (471)
.....|+...|..+|+.. ...... +...--.+..+|...|+.+.|..++..+... +. .....-|..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~a--l~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQA--LQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHH--HHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 455678888888888877 333222 2445566778888888888888888887641 11 1111223333344443
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 307 NEALDCFHYMRESGIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 307 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
.+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.+
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 433333333332 34 444444555666677777777665544433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.00 E-value=6.7 Score=37.05 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=67.6
Q ss_pred HHhCCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 012101 300 YAANGLANEALD-CFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 300 ~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
-...|+...|-+ ++..++...-.|+.......| +...|+++.+.+.+...... +.....+..++++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHH
Confidence 344555555443 344444443345544444443 34456777777666666432 2334445566666666677777
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 012101 379 EARAMVEGM-PMK-ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAY 430 (471)
Q Consensus 379 ~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 430 (471)
+|..+-+.| +.. -+..............|-++++.-.++++..++|+...-+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 777766666 211 1333333333344455666777777777766665544433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.74 E-value=5.2 Score=35.58 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=68.1
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC------HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 253 SKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PN------VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
.|.+....+...++..-....++++++..+-++.. |+ ...+ +.++ .+..-++++++.++..=+.-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccch
Confidence 34445555566666666667778888877766653 22 1111 1222 23345677888888887888999999
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHh
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
++++.+++.+.+.+++..|.++.-.|..+
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999988888777666544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.7 Score=23.92 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=16.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHH
Q 012101 429 AYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44566777777777777777665
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.50 E-value=0.61 Score=25.76 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=25.4
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 428 GAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
..+..++.+|.+.|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3577899999999999999999999876543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.36 E-value=7.5 Score=27.88 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
+.-++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44466777777888888999999999999999999999999999988755433 4445665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.23 E-value=8.8 Score=31.69 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=40.0
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 369 DLLGRAGLLEEARAMVEGMPMKANVVIWG-----CLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
..+..+|++++|..-++..--.|....+. .|.+.....|.+++|...++...+.+. .+.....-++++...|+-
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k 175 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCch
Confidence 34455555555555555441112112221 122344455555555555544333221 111223345555566666
Q ss_pred HHHHHHHHHhhcCC
Q 012101 444 EEVERIRAVMKHRN 457 (471)
Q Consensus 444 ~~A~~~~~~m~~~~ 457 (471)
++|+.-|+...+.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 66666655555544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.75 E-value=37 Score=35.12 Aligned_cols=215 Identities=11% Similarity=-0.014 Sum_probs=120.0
Q ss_pred cCcCCHHHHHHHHHHHHHhhcCCCCChh-------HHHHHH-HHHHhcCChHHHHHHHHhcCC--------CCHhhHHHH
Q 012101 233 GSLGDLELALQVHKYVFQVKSKQKSDTL-------MLNSLI-DMYGKCGRMDLAYKVFWEIDQ--------PNVSSWTSM 296 (471)
Q Consensus 233 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 296 (471)
....++.+|..+..+. ...-..|+.. .++++- ......|++++|.++-+.... ..+..+..+
T Consensus 426 ~s~~r~~ea~~li~~l--~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 426 ASQHRLAEAETLIARL--EHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHccChHHHHHHHHHH--HHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4567888999888887 3332222221 223221 223456888888877765542 455667777
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH---HHH--HHhccCCc--HHHHHHHHHHhHHhcCCCC-----ChhHH
Q 012101 297 IVGYAANGLANEALDCFHYMRESGIRPNHVTFV---GVL--SACVHGGK--VQEGKHFFEMMKNVYQIEP-----RFAHY 364 (471)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~ll--~~~~~~~~--~~~a~~~~~~~~~~~~~~p-----~~~~~ 364 (471)
..+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|+ .+.....|......+.... -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 788888999999999888766542233333222 222 22445563 3333444544443322111 22334
Q ss_pred HHHHHHHHhcCCHHHHHHH----HHhC-CCCCC--HH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHH
Q 012101 365 GCMVDLLGRAGLLEEARAM----VEGM-PMKAN--VV--IWGCLMGACEKFGNVKMGEWVAKHLQELEPWS--DGAYVVL 433 (471)
Q Consensus 365 ~~li~~~~~~g~~~~A~~~----~~~m-~~~p~--~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l 433 (471)
..+..++.+ ++.+..- ++-. ...|. .. .+..|+......|+.++|...+.++..+...+ ...|...
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444455544 3333332 2222 12222 22 22367788889999999999999998765332 2223322
Q ss_pred -----HHHHHcCCChHHHHHHHHH
Q 012101 434 -----SNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 434 -----~~~~~~~g~~~~A~~~~~~ 452 (471)
+......|+..+|.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 2223467888888887766
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.69 E-value=3.3 Score=29.62 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 205 EAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 205 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++++.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444555555566777777777777777777777777777765
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.62 E-value=19 Score=31.81 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
+++....+|...|.+.+|.++.++....+|-+...+-.++..|...|+--+|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345556789999999999999999999999988899999999999999777777666664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.51 E-value=1 Score=24.91 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=25.9
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 428 GAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
..|..++.+|...|++++|++.+++..+.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3688899999999999999999999877543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.86 E-value=6.4 Score=32.74 Aligned_cols=73 Identities=19% Similarity=0.090 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC---CCCCcchHHHHHHHHHhcCChhhHH
Q 012101 103 KKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLG---LESNEFCESGFISLYSKAGDFEKAR 176 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~ 176 (471)
+.|.+.|-.+...+.--++.....+...|. ..|.+++.+++...++.. -.+|+..+.+|...|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 677777777777665545555555555555 447888888887777642 2556777777888888877777663
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.74 E-value=1.7 Score=23.59 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
+..++.+.|++++|.+.|+++.+..|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 33444455555555555555555444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.73 E-value=5.7 Score=35.35 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESG---IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV 368 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 368 (471)
+...++..-....+++.+..++-+++..- ..|+... ...++.|.+ -+.++++.++..-. .+|+-||..+++.++
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npI-qYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPI-QYGIFPDQFTFCLLM 142 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcc-hhccccchhhHHHHH
Confidence 33444444444556666666666665431 1122111 112222221 24556666655552 346667777777777
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 012101 369 DLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m 387 (471)
+.+.+.+++.+|.++.-.|
T Consensus 143 D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHhcccHHHHHHHHHHH
Confidence 7777777766666655554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.58 E-value=32 Score=33.17 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG 339 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 339 (471)
.-+++..+..+-.+.-.+.+-.+|.. .+...|..++++|..+ ..++-..+|+++.+.. -|...+..-+..+...+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~yEki 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHHHHh
Confidence 33444444444444444444444432 3344444555555554 3445555555555432 22222222222222224
Q ss_pred cHHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCH
Q 012101 340 KVQEGKHFFEMMKNVYQIEPR------FAHYGCMVDLLGRAGLLEEARAMVEGM----PMKANVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~~~~ 409 (471)
+.+.+..+|.++..+ +-|. ...|..++..- ..+.+..+.+.... |...-.+.+..+-.-|....++
T Consensus 146 k~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 555555555554432 1121 11233322211 22333344443333 2233334444444555555666
Q ss_pred HHHHHHHHHHHhcCCCC
Q 012101 410 KMGEWVAKHLQELEPWS 426 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~ 426 (471)
++|++++..+.+.+..+
T Consensus 222 ~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 222 TEAIRILKHILEHDEKD 238 (711)
T ss_pred HHHHHHHHHHhhhcchh
Confidence 66666666555544333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.58 E-value=6.8 Score=30.75 Aligned_cols=78 Identities=10% Similarity=0.163 Sum_probs=48.0
Q ss_pred HHHHHHHHHH---hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 012101 325 HVTFVGVLSA---CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLM 400 (471)
Q Consensus 325 ~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~ 400 (471)
....+.|++. -...++.+.+..++..+.-...-.+...++. ...+...|++++|..+|++. .-.+....-..|+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 3444555543 3457899999999999974322223333433 34567899999999999999 3333433333444
Q ss_pred HHHH
Q 012101 401 GACE 404 (471)
Q Consensus 401 ~~~~ 404 (471)
..|.
T Consensus 85 A~CL 88 (153)
T TIGR02561 85 ALCL 88 (153)
T ss_pred HHHH
Confidence 3333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.47 E-value=10 Score=27.41 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 012101 137 LEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKC 216 (471)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 216 (471)
.++|.-+-+.+...+-. ...+--+-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 36666666666554311 22233334466778899999999999998889888877754 4667777777777778777
Q ss_pred CCCCCHHHHHH
Q 012101 217 GFEPDDVTMVS 227 (471)
Q Consensus 217 g~~p~~~~~~~ 227 (471)
| .|....|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 565555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.43 E-value=1.3 Score=25.83 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=17.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
+++.|+.+|...|++++|.+++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456677777777777777777776643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.11 E-value=19 Score=35.30 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=46.7
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.+.|+.+.|.++..+.. +..-|..|-++....+++..|.+.|..... |..|+-.+...|+.+..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHH
Confidence 34555555555544322 344555666666666666666666555521 33444455555554433
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012101 381 RAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKH 418 (471)
Q Consensus 381 ~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 418 (471)
..+-.... .....|...-+|...|+++++.+++.+
T Consensus 712 ~~la~~~~---~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAK---KQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHH---hhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 33222220 000112233345566666666666544
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.08 E-value=5.4 Score=33.51 Aligned_cols=77 Identities=18% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLID 267 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (471)
.+.-++.+.+.+...+++...++-++.. +.|..+-..+++.+|-.|+|++|..-++-.-+......+...+|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4556677788888888888887776663 4456667788888888999999888777664444445555666666664
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.04 E-value=9.3 Score=37.29 Aligned_cols=150 Identities=19% Similarity=0.209 Sum_probs=78.9
Q ss_pred hcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHH
Q 012101 168 KAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKY 247 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 247 (471)
-.|+++.|..++..++++ .-+.++..+.+.|-.++|+++ .+|.... .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 346677776666655532 234455555666666666654 2332211 1223356677777666544
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 248 VFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.|.. |
T Consensus 663 ~--------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N--- 725 (794)
T KOG0276|consen 663 A--------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N--- 725 (794)
T ss_pred h--------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhccc-c---
Confidence 3 134456677777777777777776665543 2444455555555555444444444444421 1
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHh
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMM 351 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~ 351 (471)
...-+|...|+++++.+++..-
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHhc
Confidence 1222334456666666655544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.92 E-value=1.1 Score=25.07 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=14.3
Q ss_pred CCCcchHHHHHHHHHhcCChhhHH
Q 012101 153 ESNEFCESGFISLYSKAGDFEKAR 176 (471)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~ 176 (471)
|-+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444556666666666666666654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.66 E-value=2.2 Score=24.70 Aligned_cols=29 Identities=14% Similarity=0.010 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 393 VVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 393 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
..+++.+...|...|++++|+.++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788888999999999999999988875
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.36 E-value=21 Score=30.10 Aligned_cols=159 Identities=16% Similarity=0.094 Sum_probs=78.5
Q ss_pred CCCC-cchHHHHHHHHHhcCChhhHHHHhccCCCCCcc-hHHHHHHH--HHcCCChhHHHHHHHHHHHCCCCCCH--HHH
Q 012101 152 LESN-EFCESGFISLYSKAGDFEKARKVFDENPERKLG-SWNAIIAG--LSQDGRAKEAIDMFIGLKKCGFEPDD--VTM 225 (471)
Q Consensus 152 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~ 225 (471)
+.|+ +.+||-|.--+...|+++.|.+.|+..-+-|+. -|..+=++ +--.|++.-|.+-+...-+.. +.|+ ..|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHH
Confidence 3444 356777777777888888888888887776654 23332222 233577888877776665542 2222 222
Q ss_pred HHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhcCCC-------CHhhHHHHH
Q 012101 226 VSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNS-LIDMYGKCGRMDLAYKVFWEIDQP-------NVSSWTSMI 297 (471)
Q Consensus 226 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li 297 (471)
.-+. -..-++.+|..-+.+- ..+. |..-|.. ++..|...=..+.+.+-...-.+. =+.||--+.
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR---~~~~--d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQR---AEKS--DKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHH---HHhc--cHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 2222 2334555555443322 1121 2222322 222222221222222211111111 124556666
Q ss_pred HHHHhCCChhHHHHHHHHHHHc
Q 012101 298 VGYAANGLANEALDCFHYMRES 319 (471)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~m~~~ 319 (471)
+-+...|+.++|..+|+-....
T Consensus 245 K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHH
Confidence 6667777777777777665543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.85 E-value=13 Score=27.06 Aligned_cols=48 Identities=8% Similarity=0.165 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 388 PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 388 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
.+-|+..+..+.++||.+.+|+..|.++|+-++..-......|-.+++
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 667899999999999999999999999998887654433335665543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.81 E-value=4.6 Score=33.90 Aligned_cols=73 Identities=14% Similarity=0.008 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHH
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD---GAYVVLSNI 436 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~ 436 (471)
.+..+..+.+.+.+.+|+...+.- .-+| |..+-..+++.++-.|++++|..-++-.-++.|... ..|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345566777888888888877765 5566 445666677888888999999888888877777543 244444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.39 E-value=29 Score=30.79 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH----hcCCCCChhH
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN----VYQIEPRFAH 363 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 363 (471)
++.....|..+|.+.+|.++-++..... +.+...+..++..++..|+--.+.+-++.+.+ ..|+..+...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 3444556677777777777777766542 34555666677777777775555555544432 2355554433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.35 E-value=2.1 Score=23.54 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=24.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+|..++..|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999987654
|
... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.03 E-value=21 Score=28.95 Aligned_cols=133 Identities=8% Similarity=-0.029 Sum_probs=76.4
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc-hHHH
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY-TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEF-CESG 161 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 161 (471)
.+...|-.-++. .+.+..++|+.-|..+.+.|...=+. ..........+.|+...|...|+++-.....|-.. -.-.
T Consensus 57 ~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 344455555543 56778899999999998877431111 11112234567888888888888876644333322 1111
Q ss_pred H--HHHHHhcCChhhHHHHhccCCCCCcc----hHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 012101 162 F--ISLYSKAGDFEKARKVFDENPERKLG----SWNAIIAGLSQDGRAKEAIDMFIGLKKCG 217 (471)
Q Consensus 162 l--l~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g 217 (471)
| ...+...|.++....-.+-+..+... .-.+|.-+-.+.|++.+|.+.|..+....
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 1 12234566677766666665543222 34455556666777777777777665543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.91 E-value=0.99 Score=24.61 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=25.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
.+..++.+|.+.|++++|.+.|+++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 356788899999999999999999987543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.71 E-value=1.8 Score=25.88 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=20.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 432 VLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
.|..+|...|+.+.|.++++++...+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 56778888888888888888887544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.46 E-value=2.9 Score=37.53 Aligned_cols=92 Identities=16% Similarity=0.095 Sum_probs=67.8
Q ss_pred HHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 012101 333 SACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 409 (471)
.-|.+.|.+++|+..|..... +.| +.+++..-..+|.+..++..|+.-.... .+.- -...|..=+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 358899999999999988764 355 7788888888999999998887765554 2221 123455555555567788
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 012101 410 KMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~ 427 (471)
.+|.+-++...+++|.+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 888888888889998754
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=82.23 E-value=19 Score=28.30 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCC---------CCCcchHHHHHHHHHcCCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 012101 159 ESGFISLYSKAGDFEKARKVFDENP---------ERKLGSWNAIIAGLSQDGR-AKEAIDMFIGLKKCGFEPDDVTMVSV 228 (471)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l 228 (471)
.|.++...+..+++.....+++.+. ..+-.+|++++.+..+..- ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4556666566666666666665543 1234468888888766555 34466777888877778888888888
Q ss_pred HHHHcCcCC
Q 012101 229 TSACGSLGD 237 (471)
Q Consensus 229 i~~~~~~~~ 237 (471)
|.++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 888766533
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.77 E-value=32 Score=34.77 Aligned_cols=183 Identities=13% Similarity=0.146 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCHh----------hHHHHHHHHHhCC
Q 012101 239 ELALQVHKYVFQVKSKQKSD---TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PNVS----------SWTSMIVGYAANG 304 (471)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~~ 304 (471)
++-..++.+| .++-..|+ ..+...++-.|....+++...++.+.++. ||.. .|.-.++---+-|
T Consensus 180 ~~l~~~L~~m--R~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 180 DQLNDYLDKM--RTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHH--HhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCc
Confidence 3444566666 44433443 34556677778888889999988888876 4332 2222233333457
Q ss_pred ChhHHHHHHHHHHHc--CCCCCHHH-----HHHHH--HHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 012101 305 LANEALDCFHYMRES--GIRPNHVT-----FVGVL--SACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG 375 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~--~~~p~~~~-----~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 375 (471)
+-++|+...-.|.+. .+.||..+ |.-+. ..|...+..+.|.+.|++.- .+.|+...--.+...+...|
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhh
Confidence 788888888777765 35677543 22221 23455667788888888775 45676554333333333333
Q ss_pred CH-HHHHHH------HHhC-CCCCCHH---HH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 376 LL-EEARAM------VEGM-PMKANVV---IW---GCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 376 ~~-~~A~~~------~~~m-~~~p~~~---~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
.. +.-.++ +..+ |.+-... .| ...+.+-.-.+|+.+|.+.-+.|.++.|+.
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 32 211111 1111 2222211 11 122334455678999999999999988754
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=81.70 E-value=52 Score=31.79 Aligned_cols=48 Identities=4% Similarity=-0.135 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 340 KVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
+.+....+..++....|...-...+.-+-.-|....++++|.+++..+
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 444444444444444444444444444444555555555555555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.8 bits (169), Expect = 8e-13
Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 10/232 (4%)
Query: 175 ARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDM----FIGLKKCGFEPDDVTMVSVTS 230
A + D + W +A L Q+ K ++D+ + +++
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 231 ACGSLGDLELALQV-HKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID--- 286
C L LA + + Q + ++ M N+++ + + G V + +
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 287 -QPNVSSWTSMIVGYAANGLANEAL-DCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEG 344
P++ S+ + + + C M + G++ + +LS ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 345 KHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIW 396
Q+ P + D+ + G + + + ++
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 62/468 (13%), Positives = 135/468 (28%), Gaps = 138/468 (29%)
Query: 40 ASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYA--HIIRTHMLHSYSAAFHWNNIIRLYT 97
S P+ + + + L NQ++A ++ R +L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL------------KLRQ 142
Query: 98 RLEAPKKALDIYIF-MSRAG----VLPDCYTLPIVLKASCQLFALEIGR---------QL 143
L + A ++ I + +G L C + + K ++F L + L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 144 HSLAVRLGLESNEFCESGF-ISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGR 202
L ++ + I L + E R + + E L ++ L + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LV--LL-NVQ 254
Query: 203 AKEAIDMF-IGLKKCGFEPDDVTMV-----SVTSACGSLGDLELALQVHKYVFQVKSKQK 256
+A + F + K ++ VT + ++L H + +
Sbjct: 255 NAKAWNAFNLSCK---------ILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDE 302
Query: 257 SDTLMLNSLIDMYGK------CGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEAL 310
+L+L L D + + E + +++W + +
Sbjct: 303 VKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATW---------DNWKHVNC 352
Query: 311 DCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMM----KNVYQIEPRFAHYGC 366
D + ES + VL E + F+ + + I
Sbjct: 353 DKLTTIIES--------SLNVLEP-------AEYRKMFDRLSVFPPSA-HI--------- 387
Query: 367 MVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQE---LE 423
P +IW ++ + V L + +E
Sbjct: 388 ---------------------PTILLSLIWFDVIKSDV--------MVVVNKLHKYSLVE 418
Query: 424 PWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATRLD 471
+ + + +IY L ++E A+ HR++ + Y++ D
Sbjct: 419 KQPKESTISIPSIYLE--LKVKLENEYAL--HRSI--VDHYNIPKTFD 460
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 43/320 (13%), Positives = 80/320 (25%), Gaps = 116/320 (36%)
Query: 1 MLSLVPGISLSSLR--MKSSHPLLH----RLCKTHTFR----KHV-------TISAASSF 43
+L L + +++P + KHV I ++ +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 44 LDTHE------------DPAKIVATQLSKCTNLLQLNQIYAHIIR-THMLHSYSAAFHWN 90
L+ E A I LS L+ + I + ++ + LH YS
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLS----LIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAV-- 148
+ +P Y L+ +L E LH V
Sbjct: 422 KESTIS---------------------IPSIY-----LELKVKL---ENEYALHRSIVDH 452
Query: 149 ---RLGLESNEF---CESGFISLY--------SKAGDFEKARKVFDENPERKLGSWNAII 194
+S++ + + R VF
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--------------- 497
Query: 195 AGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGD-LELALQVHKYVFQVKS 253
D R F+ K + ++A + G L Q+ Y +
Sbjct: 498 ----LDFR-------FLEQK----------IRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 254 KQKSDTLMLNSLIDMYGKCG 273
++N+++D K
Sbjct: 537 NDPKYERLVNAILDFLPKIE 556
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.81 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.79 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.79 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.77 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.76 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.75 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.75 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.75 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.66 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.61 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.61 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.55 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.5 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.49 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.49 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.48 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.47 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.47 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.45 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.42 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.38 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.33 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.33 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.32 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.32 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.31 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.31 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.26 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.24 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.15 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.12 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.11 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.11 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.1 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.09 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.96 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.94 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.92 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.88 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.88 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.87 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.86 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.85 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.84 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.78 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.77 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.73 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.72 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.69 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.61 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.57 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.54 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.49 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.44 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.43 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.43 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.4 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.29 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.17 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.15 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.06 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.06 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.06 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.01 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.0 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.94 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.92 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.88 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.87 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.72 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.69 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.68 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.58 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.21 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.11 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.09 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.08 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.77 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.5 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.31 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.28 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.64 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.34 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.98 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.57 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.44 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.08 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.53 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.63 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.56 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.45 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.51 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.16 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.1 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.67 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.27 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.24 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.62 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.61 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 88.38 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.13 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.15 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.11 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.04 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.54 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.38 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.95 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 83.69 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.6 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.4 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.77 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.58 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 80.88 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=320.51 Aligned_cols=429 Identities=7% Similarity=-0.023 Sum_probs=371.9
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC-CCCchhhHHHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH-SYSAAFHWNNIIRLY 96 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~li~~~ 96 (471)
+..+++.+.+..+++.+..++... ++..|+.. .+..+...|.+ .|++++|..+|+++. .+++..+|+.++.+|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~--~~~~p~~~-~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKV--LDITGNPN-DAFWLAQVYCC---TGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH--HHHHCCHH-HHHHHHHHHHH---TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHH--HhhCCCch-HHHHHHHHHHH---cCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 455677777777777776666644 35667888 88999999999 788999999999874 257889999999999
Q ss_pred HhCCCchHHHHHHHHHHHC---------------CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHH-
Q 012101 97 TRLEAPKKALDIYIFMSRA---------------GVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCES- 160 (471)
Q Consensus 97 ~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 160 (471)
.+.|++++|+++|+++... |.+++..+|+.++.++.+.|++++|.++|+++.+.+ +.+...+.
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHH
Confidence 9999999999999953221 223457899999999999999999999999999875 22333332
Q ss_pred -------------------------------------HHHHHHHhcCChhhHHHHhccCCC--CCcchHHHHHHHHHcCC
Q 012101 161 -------------------------------------GFISLYSKAGDFEKARKVFDENPE--RKLGSWNAIIAGLSQDG 201 (471)
Q Consensus 161 -------------------------------------~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~ 201 (471)
.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 235566788999999999999987 78889999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012101 202 RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKV 281 (471)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (471)
++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+ .+. .+.+..+++.++.+|.+.|++++|.++
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDL--VDR-HPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHH--HHH-CTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH--Hhh-CcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999875 457788999999999999999999999999 543 355788999999999999999999999
Q ss_pred HHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCC
Q 012101 282 FWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIE 358 (471)
Q Consensus 282 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (471)
|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--Q 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 998754 567899999999999999999999999999874 4578899999999999999999999999998652 3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 012101 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGM-------PMKAN--VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA 429 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 429 (471)
.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+|.++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 46789999999999999999999999998 45787 7899999999999999999999999999999988899
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 430 YVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
|..++.+|.+.|++++|.+.++++.+.++..
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999998876554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=297.13 Aligned_cols=377 Identities=9% Similarity=-0.078 Sum_probs=320.0
Q ss_pred cCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHH
Q 012101 67 LNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSL 146 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 146 (471)
.|....+...+..++. +++..|+.++..|.+.|++++|+.+|++|.+ ..|+..++..++.+|.+.|++++|..+++.
T Consensus 66 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 4556777777877764 6788999999999999999999999999985 457889999999999999999999999998
Q ss_pred HHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCC-------------------cchHHHHHHHHHcCCChhHHH
Q 012101 147 AVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERK-------------------LGSWNAIIAGLSQDGRAKEAI 207 (471)
Q Consensus 147 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~li~~~~~~~~~~~a~ 207 (471)
+... +++..+++.++.+|.+.|++++|.++|+++...+ ..+|+.++.+|.+.|++++|+
T Consensus 143 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 143 EDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp TCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 8643 6788999999999999999999999999654433 668999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHH--------------------------------------HHHHHcCcCCHHHHHHHHHHHH
Q 012101 208 DMFIGLKKCGFEPDDVTMVS--------------------------------------VTSACGSLGDLELALQVHKYVF 249 (471)
Q Consensus 208 ~~~~~m~~~g~~p~~~~~~~--------------------------------------li~~~~~~~~~~~a~~~~~~~~ 249 (471)
++|++|.+.+ +.+...+.. ++..|.+.|++++|.++|+.+
T Consensus 221 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~- 298 (597)
T 2xpi_A 221 ECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI- 298 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh-
Confidence 9999998864 223333332 245567889999999999988
Q ss_pred HhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 012101 250 QVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV 326 (471)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 326 (471)
.+. +++..+++.++.+|.+.|++++|..+|+++.+ .+..+|+.++.++.+.|++++|..+++++.+.. +.+..
T Consensus 299 -~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 299 -NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp -TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred -hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 554 57899999999999999999999999999864 567899999999999999999999999998653 55788
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
++..+...|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++ ...| +..+|..++.+|.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 99999999999999999999999997642 345779999999999999999999999998 4444 7889999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 405 KFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+.|++++|.++|+++.+..|.++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998999999999999999999999999999775
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=247.27 Aligned_cols=183 Identities=11% Similarity=0.207 Sum_probs=159.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCC---------HHHHHHHHHHHHHhhcCCCCCh
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGD---------LELALQVHKYVFQVKSKQKSDT 259 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 259 (471)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++| ...|+.||.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M--~~~G~~Pd~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM--IVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH--HHTTCCCCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH--HHhCCCCCH
Confidence 5778888888889999999999999888999999999999988876553 67888899998 888889999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
.+|+++|++|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999988864 888999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA 374 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 374 (471)
++.|++++|.+++++|.+. |..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999665 8889999999888888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=250.95 Aligned_cols=212 Identities=13% Similarity=0.077 Sum_probs=175.2
Q ss_pred hHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhcc
Q 012101 103 KKALDIYIFMSRAGVLPDC-YTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDE 181 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 181 (471)
..+..+.+++.++++.+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3455666777777765544 357788888888888888888888888888888888888888888877654332
Q ss_pred CCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhH
Q 012101 182 NPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLM 261 (471)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 261 (471)
.+.++.++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++| .+.|+.||..+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M--~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQM--KAFGIQPRLRS 142 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHTTCCCCHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHcCCCCccce
Confidence 234567889999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
|+++|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999964 99999999999999999999999999999999999999999999998876
Q ss_pred C
Q 012101 338 G 338 (471)
Q Consensus 338 ~ 338 (471)
.
T Consensus 223 ~ 223 (501)
T 4g26_A 223 E 223 (501)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-27 Score=222.46 Aligned_cols=367 Identities=12% Similarity=0.039 Sum_probs=296.9
Q ss_pred cCchHHHHHHhcccC--CCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 012101 67 LNQIYAHIIRTHMLH--SYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLH 144 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 144 (471)
.|++++|...++++. .+.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...|
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 678888888887653 23455667777788888999999999998887754 456778888999999999999999999
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 012101 145 SLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE--R-KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD 221 (471)
Q Consensus 145 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 221 (471)
+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.+.. +.+
T Consensus 91 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 168 (388)
T 1w3b_A 91 RHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 9988764 44456788888999999999999999887643 3 33467788888888899999999999888763 445
Q ss_pred HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHH
Q 012101 222 DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIV 298 (471)
Q Consensus 222 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 298 (471)
..++..+...+...|++++|...|+++ .+.. +.+...+..+...+...|++++|...|++..+ .+..++..+..
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKA--VTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 678888888899999999999999988 5543 33567788888899999999999998887653 45678888889
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
.+...|++++|...++++.+.+ +.+..++..+...+.+.|++++|.+.|+++.+. .+.+..++..+...+.+.|+++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999988763 234667888888899999999999999998765 2456778888889999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 012101 379 EARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGL 442 (471)
Q Consensus 379 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 442 (471)
+|.+.++++ ...| +..++..+..++.+.|++++|...++++.+..|..+..|..++.++.+.|+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999888 5555 467888889999999999999999999999888888888888888777653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-27 Score=221.99 Aligned_cols=359 Identities=12% Similarity=0.076 Sum_probs=308.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 012101 92 IIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD 171 (471)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 171 (471)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456778999999999999998763 2344556666677889999999999999998865 6677899999999999999
Q ss_pred hhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 172 FEKARKVFDENPE--R-KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 172 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
+++|.+.|+++.+ | +..+|..+..++.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.|+.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999998653 3 44579999999999999999999999998863 334566778888899999999999999999
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 249 FQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++..+.. +.+.
T Consensus 162 --l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 162 --IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp --HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred --HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 5543 34578899999999999999999999998864 456788889999999999999999999998763 3357
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PM-KANVVIWGCLMGAC 403 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~ 403 (471)
.++..+..++...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|.+.++++ .. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 788899999999999999999999997642 234678999999999999999999999998 33 34778999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+.|++++|...++++.+..|.+..++..++.+|.+.|++++|.+.++++.+..+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999988889999999999999999999999999886544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=209.56 Aligned_cols=395 Identities=10% Similarity=-0.043 Sum_probs=315.4
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCC-CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHS-YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKAS 131 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 131 (471)
.+..+...+.+ .|++++|+..|+++.. .|+..+|..+..++.+.|++++|+..++++.+.+ +.+...+..+..++
T Consensus 8 ~~~~~g~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFR---NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHH---TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 45566677777 7889999999998743 4788999999999999999999999999998865 33567888999999
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhc-------------------------------
Q 012101 132 CQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFD------------------------------- 180 (471)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~------------------------------- 180 (471)
.+.|++++|...|+.+.+.+ +++......++..+.+......+.+.+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999876 3444444445544444332222222221
Q ss_pred -------cCC---------CC-CcchHHHHHHHHHc---CCChhHHHHHHHHHHH-----CCC--------CCCHHHHHH
Q 012101 181 -------ENP---------ER-KLGSWNAIIAGLSQ---DGRAKEAIDMFIGLKK-----CGF--------EPDDVTMVS 227 (471)
Q Consensus 181 -------~~~---------~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~ 227 (471)
... .+ +...+......+.. .|++++|+.+|+++.+ ... +.+...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 100 01 12244444454554 8999999999999987 311 223457778
Q ss_pred HHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCC
Q 012101 228 VTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANG 304 (471)
Q Consensus 228 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 304 (471)
+...+...|++++|...++.+ .+.... ...+..+..+|...|++++|...|+++.+ .+...|..+...+...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~--l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKA--IELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHH--HHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHH--HhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 888899999999999999999 655544 88899999999999999999999998765 45678899999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMV 384 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 384 (471)
++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.+
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998864 3356788888999999999999999999997653 335678889999999999999999999
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 385 EGM----PMKAN----VVIWGCLMGACEK---FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 385 ~~m----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
+++ +..++ ..++..+..++.. .|++++|...++++.+..|.++..+..++.+|.+.|++++|.+.+++.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 988 22222 4488999999999 999999999999999999988889999999999999999999999999
Q ss_pred hcCCCc
Q 012101 454 KHRNLA 459 (471)
Q Consensus 454 ~~~~~~ 459 (471)
.+.+..
T Consensus 476 ~~~~~~ 481 (514)
T 2gw1_A 476 ADLART 481 (514)
T ss_dssp HHHCSS
T ss_pred HHhccc
Confidence 876553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-23 Score=196.44 Aligned_cols=318 Identities=11% Similarity=-0.006 Sum_probs=188.6
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 163 (471)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 456678888888888888888888888887653 3456777778888888888888888888888765 44456667777
Q ss_pred HHHHhcCChhhHHHHhccCCCCCc------chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCC
Q 012101 164 SLYSKAGDFEKARKVFDENPERKL------GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGD 237 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 237 (471)
.+|.+.|++++|.+.|+++.+.+. ..+..++..+... .+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 777777777777777766544322 3343333321100 01111222334455
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHH
Q 012101 238 LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFH 314 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 314 (471)
+++|...++.+ .+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|...|+
T Consensus 159 ~~~A~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 159 YTAAIAFLDKI--LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555554 2221 22344455555555555555555555554432 344555555555555555555555555
Q ss_pred HHHHcCCCCC-HHHHHHH------------HHHhccCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCC
Q 012101 315 YMRESGIRPN-HVTFVGV------------LSACVHGGKVQEGKHFFEMMKNVYQIEPR-----FAHYGCMVDLLGRAGL 376 (471)
Q Consensus 315 ~m~~~~~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~ 376 (471)
++.+. .|+ ...+..+ ...|.+.|++++|...|+.+.+. .|+ ...+..+..++.+.|+
T Consensus 236 ~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 236 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCC
Confidence 55543 222 2222222 45566666666666666666543 233 2355666666666777
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 377 LEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 377 ~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
+++|.+.++++ ...| +..+|..+..+|...|++++|...++++.+..|.++..+..+.
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 77777766665 3333 4566666667777777777777777777766666665655555
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-23 Score=199.23 Aligned_cols=401 Identities=9% Similarity=-0.064 Sum_probs=306.7
Q ss_pred hHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC--CCCchhhHHHHHHHHH
Q 012101 20 PLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH--SYSAAFHWNNIIRLYT 97 (471)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~ 97 (471)
..-..+....+++.+..... ..+...|++. .+..+...|.+ .|++++|...|++.. .+.+..+|..+..++.
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~--~al~~~p~~~-~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYN--WALELKEDPV-FYSNLSACYVS---VGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHH--HHHHHCCCHH-HHHHHHHHHHH---HTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHH--HHHhcCccHH-HHHhHHHHHHH---HhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 33444555666666555554 5555568888 99999999999 888999999998764 2456779999999999
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh---------------------------
Q 012101 98 RLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRL--------------------------- 150 (471)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------------- 150 (471)
+.|++++|+..|+++.+.+. ++......++..+........+.+.+..+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999998763 45555555554444332222222222111100
Q ss_pred --------CC---------CCCcchHHHHHHHHHh---cCChhhHHHHhccCCC----------------C-CcchHHHH
Q 012101 151 --------GL---------ESNEFCESGFISLYSK---AGDFEKARKVFDENPE----------------R-KLGSWNAI 193 (471)
Q Consensus 151 --------~~---------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~----------------~-~~~~~~~l 193 (471)
.. +.+...+..+...+.. .|++++|.+.|+++.+ + +..+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 00 0112233333343443 8999999999987544 1 23478889
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 012101 194 IAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG 273 (471)
Q Consensus 194 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 273 (471)
...+...|++++|...|+++.+.. |+...+..+..++...|++++|...++.+ .... +.+..++..+...|...|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKA--LKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHH--HTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHH--hhcC-cCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998874 44888889999999999999999999998 5543 345778999999999999
Q ss_pred ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHH
Q 012101 274 RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEM 350 (471)
Q Consensus 274 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (471)
++++|...|++..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998753 456788889999999999999999999998763 33567888889999999999999999999
Q ss_pred hHHhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 351 MKNVYQIEPR----FAHYGCMVDLLGR---AGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 351 ~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
+.+...-.++ ...+..+...+.. .|++++|.+.++.+ ...| +..++..+..++.+.|++++|...++++.+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8765333333 3488899999999 99999999999998 4444 577889999999999999999999999999
Q ss_pred cCCCCCchHHHH
Q 012101 422 LEPWSDGAYVVL 433 (471)
Q Consensus 422 ~~~~~~~~~~~l 433 (471)
..|.++..+..+
T Consensus 478 ~~~~~~~~~~~~ 489 (514)
T 2gw1_A 478 LARTMEEKLQAI 489 (514)
T ss_dssp HCSSHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 999876655544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-21 Score=191.29 Aligned_cols=390 Identities=11% Similarity=-0.013 Sum_probs=266.0
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKA 130 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 130 (471)
.+..+...+.+ .|++++|...|++.-. +.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+...+..+..+
T Consensus 27 ~~~~~g~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 27 QLKNRGNHFFT---AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHH---TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 44555555666 5566666666665432 3455666667777777777777777777766653 2345556666666
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCc-----------------------------------chHHHHHHHHHhcCChhhH
Q 012101 131 SCQLFALEIGRQLHSLAVRLGLESNE-----------------------------------FCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------------------------~~~~~ll~~~~~~g~~~~a 175 (471)
+...|++++|...++. ... .|+. ......+..+....+.+.+
T Consensus 103 ~~~~g~~~~A~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSV-LSL--NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHTCHHHHHHHHHH-HC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHHH-Hhc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 6677777777766642 211 1111 1112223333344444444
Q ss_pred HHHhccCCCCCcc---hHHHHHHHHHcC--------CChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHcCcC
Q 012101 176 RKVFDENPERKLG---SWNAIIAGLSQD--------GRAKEAIDMFIGLKKCGFEPD--------DVTMVSVTSACGSLG 236 (471)
Q Consensus 176 ~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~--------~~~~~~li~~~~~~~ 236 (471)
...+......+.. ....+...+... |++++|+.+|+++.+. .|+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 4444444433332 223333322222 4788888898888865 343 224666667778889
Q ss_pred CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHH
Q 012101 237 DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCF 313 (471)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 313 (471)
++++|...++.+ .+.. |+...+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|...+
T Consensus 258 ~~~~A~~~~~~~--~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQES--INLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHH--HHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH--HhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999988 5543 3467788888889999999999999987754 45678888888999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C----
Q 012101 314 HYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-P---- 388 (471)
Q Consensus 314 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---- 388 (471)
++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.++++ .
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9988764 3345678888888889999999999999987652 334567888888999999999999998887 1
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 389 ---MKANVVIWGCLMGACEKF----------GNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 389 ---~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
.......+.....++... |++++|...++++.+..|.++..+..++.+|.+.|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111223345556677777 9999999999999999988888889999999999999999999998876
Q ss_pred CCC
Q 012101 456 RNL 458 (471)
Q Consensus 456 ~~~ 458 (471)
...
T Consensus 491 ~~~ 493 (537)
T 3fp2_A 491 LAR 493 (537)
T ss_dssp HC-
T ss_pred hCC
Confidence 544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=187.81 Aligned_cols=308 Identities=13% Similarity=0.009 Sum_probs=218.0
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHH
Q 012101 120 DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE---RKLGSWNAIIAG 196 (471)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 196 (471)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|.+.|+++.+ .+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34445555555555555555555555555432 33344455555555555555555555544322 123344455555
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 012101 197 LSQDGRAKEAIDMFIGLKKCGFEPDD----VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKC 272 (471)
Q Consensus 197 ~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (471)
|.+.|++++|...|+++.+. .|+. ..+..+...+. ...+..+...+.+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE-------------------------MQRLRSQALNAFGS 156 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHc
Confidence 55555555555555555433 2221 22222221110 00122335568889
Q ss_pred CChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHH
Q 012101 273 GRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFE 349 (471)
Q Consensus 273 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (471)
|++++|...|+++.+ .+...+..+...|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...|+
T Consensus 157 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998764 567889999999999999999999999998763 4567889999999999999999999999
Q ss_pred HhHHhcCCCCC-hhHHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHH
Q 012101 350 MMKNVYQIEPR-FAHYGCM------------VDLLGRAGLLEEARAMVEGM-PMKAN-----VVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 350 ~~~~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~l~~~~~~~~~~~ 410 (471)
++.+. .|+ ...+..+ ...+.+.|++++|.+.|+++ ...|+ ...+..+..++.+.|+++
T Consensus 236 ~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 99765 344 3344444 78899999999999999998 54554 457888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 411 MGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+|...++++.+..|.++..|..++.+|...|++++|.+.++++.+..+.
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 9999999999999988899999999999999999999999999886554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=187.59 Aligned_cols=367 Identities=11% Similarity=0.000 Sum_probs=275.1
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFIS 164 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 164 (471)
....|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++.+.|++++|.+.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34578889999999999999999999998865 3467889999999999999999999999999876 556788899999
Q ss_pred HHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHC------CCCCCHHH--------------
Q 012101 165 LYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKC------GFEPDDVT-------------- 224 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~-------------- 224 (471)
++...|++++|.+.|+.+. .+....+..+..+...+...+|...++++... ...|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999999996442 22222333344455555667788888777542 11222222
Q ss_pred ----------------HHHHHHHHcCc--------CCHHHHHHHHHHHHHhhcCCCCC------hhHHHHHHHHHHhcCC
Q 012101 225 ----------------MVSVTSACGSL--------GDLELALQVHKYVFQVKSKQKSD------TLMLNSLIDMYGKCGR 274 (471)
Q Consensus 225 ----------------~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~ 274 (471)
...+...+... +++++|..+++.+ .+...... ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~--l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL--LSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH--HC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 12222222222 3788888888888 54432211 2346677788889999
Q ss_pred hHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 275 MDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 275 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
+++|...|++..+ |+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999998864 667788888889999999999999999988764 3457788888889999999999999999997
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-
Q 012101 353 NVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA- 429 (471)
Q Consensus 353 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 429 (471)
+.. +.+...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|.++..
T Consensus 338 ~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 652 234567888999999999999999999988 3344 56688888999999999999999999998877554433
Q ss_pred -----HHHHHHHHHcC----------CChHHHHHHHHHhhcCCCc
Q 012101 430 -----YVVLSNIYASR----------GLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 430 -----~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~ 459 (471)
+..++.+|.+. |++++|.+.++++.+....
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 34456777777 9999999999998876543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-19 Score=165.67 Aligned_cols=322 Identities=10% Similarity=-0.032 Sum_probs=195.7
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFIS 164 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 164 (471)
|+..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567778888888888888888888887754 3356677777788888888888888888887764 334566677777
Q ss_pred HHHhcCChhhHHHHhccCCCCCc---c---hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCH
Q 012101 165 LYSKAGDFEKARKVFDENPERKL---G---SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDL 238 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~~~~~---~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 238 (471)
.+...|++++|.+.|++..+.+. . .+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 77777777777777766544332 1 2222210000 00111223444455555
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHH
Q 012101 239 ELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (471)
++|...++.+ .+.. +.+...+..+...|...|++++|...+++..+ .+..++..+...+...|++++|...+++
T Consensus 137 ~~A~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 137 TAAITFLDKI--LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555 3222 22344555555555555555555555555433 3445555566666666666666666666
Q ss_pred HHHcCCCCCHHHHH------------HHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHH
Q 012101 316 MRESGIRPNHVTFV------------GVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF-----AHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 316 m~~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~ 378 (471)
..+.. +.+...+. .+...+.+.|++++|...++++.+.. |+. ..+..+...+...|+++
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHccCHH
Confidence 65542 11122111 22445667777777777777776542 332 22344566777777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 379 EARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 379 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
+|.+.+++. ...| +..++..+..++...|++++|...++++.+..|.++..+..+..++.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 777777776 3344 56677777777777777777777777777777776666666555543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-19 Score=164.22 Aligned_cols=307 Identities=12% Similarity=-0.016 Sum_probs=224.9
Q ss_pred cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHH
Q 012101 121 CYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE---RKLGSWNAIIAGL 197 (471)
Q Consensus 121 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 197 (471)
...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.|++..+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3455566666777777777777777776654 34455666666666666666666666665432 2334566666666
Q ss_pred HcCCChhHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 012101 198 SQDGRAKEAIDMFIGLKKCGFEP---D-DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG 273 (471)
Q Consensus 198 ~~~~~~~~a~~~~~~m~~~g~~p---~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 273 (471)
...|++++|...|++..+. .| + ...+..+.... . ...+..+...+...|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H------------------HHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H------------------HHHHHHHHHHHHHcc
Confidence 6666666666666666544 23 1 11111111100 0 111233467889999
Q ss_pred ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHH
Q 012101 274 RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEM 350 (471)
Q Consensus 274 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (471)
++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.
T Consensus 135 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998764 567888999999999999999999999998863 44678888999999999999999999999
Q ss_pred hHHhcCCCCC-hhHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHH
Q 012101 351 MKNVYQIEPR-FAHYG------------CMVDLLGRAGLLEEARAMVEGM-PMKANV-----VIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 351 ~~~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~~-----~~~~~l~~~~~~~~~~~~ 411 (471)
..+.. |+ ...+. .+...+.+.|++++|.+.++++ ...|+. ..+..+..++...|++++
T Consensus 214 a~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 214 CLKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhC---ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 98652 33 22232 2366789999999999999998 434432 235567789999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 412 GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
|...++++.+..|.++..+..++.+|.+.|++++|.+.++++.+..+.
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999988899999999999999999999999999987654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=159.44 Aligned_cols=281 Identities=11% Similarity=-0.009 Sum_probs=151.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 158 CESGFISLYSKAGDFEKARKVFDENPE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
.+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+...+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 333334444444444444444433321 122233334444444445555555554444432 2233444444444444
Q ss_pred cC-CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHH
Q 012101 235 LG-DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEAL 310 (471)
Q Consensus 235 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 310 (471)
.| ++++|...++.+ .... +.+...+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~a--~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 103 VGHKNEHARRYLSKA--TTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp SCSCHHHHHHHHHHH--HTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHH--HHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 55 555555555544 3222 12334455555555555555555555554432 22344445555666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012101 311 DCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ-------IEPRFAHYGCMVDLLGRAGLLEEARAM 383 (471)
Q Consensus 311 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~ 383 (471)
..+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|...|++++|.+.
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666665542 23445556666666666666666666666654321 122345666777777777777777777
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HcCCCh
Q 012101 384 VEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIY-ASRGLW 443 (471)
Q Consensus 384 ~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 443 (471)
+++. ...| +...+..+..++...|++++|...++++.+..|.++..+..+..++ ...|+.
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 7776 3233 4566777777777777777777777777777777776777777766 344443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-17 Score=151.90 Aligned_cols=287 Identities=12% Similarity=-0.002 Sum_probs=170.9
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFIS 164 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 164 (471)
+...+......+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~------ 92 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVS------ 92 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHH------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHH------
Confidence 34455555555666666666666666665543 2234444445555555566666666666555543 223334
Q ss_pred HHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHH
Q 012101 165 LYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDG-RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQ 243 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 243 (471)
|..+...+...| ++++|...|++..+.. +.+...+..+...+...|++++|..
T Consensus 93 -------------------------~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 93 -------------------------WFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp -------------------------HHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred -------------------------HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence 444444444555 4555555555554432 2234445555555555555555555
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 012101 244 VHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESG 320 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 320 (471)
.++.+ .+... .+...+..+...|...|++++|...|++..+ .+...+..+...+...|++++|...+++..+..
T Consensus 147 ~~~~a--~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 147 AYFTA--AQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHH--HHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 55555 33221 1233444455566666666666666665543 344566667777777777777777777766531
Q ss_pred --------CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 012101 321 --------IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA 391 (471)
Q Consensus 321 --------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 391 (471)
.+.+..++..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++. .+.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 13335677788888888888888888888887652 335567888888888899999999999888 6666
Q ss_pred -CHHHHHHHHHHH-HhcCCHH
Q 012101 392 -NVVIWGCLMGAC-EKFGNVK 410 (471)
Q Consensus 392 -~~~~~~~l~~~~-~~~~~~~ 410 (471)
+...+..+..++ ...|+.+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC--
T ss_pred CchHHHHHHHHHHHHHhCchh
Confidence 556777777766 4555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-17 Score=156.76 Aligned_cols=352 Identities=12% Similarity=-0.015 Sum_probs=219.4
Q ss_pred CCchhhHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCC
Q 012101 83 YSAAFHWNNIIRLYTR----LEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQ----LFALEIGRQLHSLAVRLGLES 154 (471)
Q Consensus 83 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 154 (471)
..+..++..+-..|.. .+++++|+..|++..+.| +...+..+-..+.. .+++++|.+.|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3455666666666666 667777777777766654 44555556666665 667777777777766654
Q ss_pred CcchHHHHHHHHHh----cCChhhHHHHhccCCCC-CcchHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHH
Q 012101 155 NEFCESGFISLYSK----AGDFEKARKVFDENPER-KLGSWNAIIAGLSQ----DGRAKEAIDMFIGLKKCGFEPDDVTM 225 (471)
Q Consensus 155 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~ 225 (471)
+...+..|...|.. .+++++|.+.|++..+. +..++..+...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44555556666666 56777777777664433 33456666666665 567777777777766654 44555
Q ss_pred HHHHHHHcC----cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcCC-CCHhhHHHH
Q 012101 226 VSVTSACGS----LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK----CGRMDLAYKVFWEIDQ-PNVSSWTSM 296 (471)
Q Consensus 226 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l 296 (471)
..+...|.. .++.++|.+.|+.. .+.+ +...+..+...|.. .+++++|..+|++..+ .+...+..+
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a--~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 261 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKS--ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRL 261 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHH--HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555554 66777777777766 4443 34456666666664 6677777777776544 445555556
Q ss_pred HHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC-----CcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 012101 297 IVGYAA----NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG-----GKVQEGKHFFEMMKNVYQIEPRFAHYGCM 367 (471)
Q Consensus 297 i~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 367 (471)
...|.. .+++++|...|++..+.| +...+..+...|... ++.++|...+++..+. .+...+..+
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~l 334 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANL 334 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHH
Confidence 666665 667777777777766554 333444455555544 6777777777776543 233455556
Q ss_pred HHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc-
Q 012101 368 VDLLGRAG---LLEEARAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS- 439 (471)
Q Consensus 368 i~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 439 (471)
...|...| ++++|.+.|++.-...+...+..+...|.. .+++++|...+++..+.+ ++..+..|..+|.+
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 66665545 566777777766112356666666666666 667777777777776654 34566667777766
Q ss_pred ---CCChHHHHHHHHHhhcCC
Q 012101 440 ---RGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 440 ---~g~~~~A~~~~~~m~~~~ 457 (471)
.+++++|.+.|++..+.+
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 677777777777776655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.7e-19 Score=160.62 Aligned_cols=287 Identities=13% Similarity=0.074 Sum_probs=137.1
Q ss_pred cCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHH
Q 012101 67 LNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSL 146 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 146 (471)
.|++++|..++++++. | .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 16 ~~~ld~A~~fae~~~~-~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 16 IGNLDRAYEFAERCNE-P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCC-h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6779999999999954 3 48999999999999999999999753 5888999999999999999999998887
Q ss_pred HHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 012101 147 AVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMV 226 (471)
Q Consensus 147 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 226 (471)
..+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7763 45578889999999999999999988864 67779999999999999999999999977 3789
Q ss_pred HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCCh
Q 012101 227 SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLA 306 (471)
Q Consensus 227 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 306 (471)
.++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 9999999999999999999876 267899999999999999999988777665 3444455689999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHHHhcCCHHHH
Q 012101 307 NEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP------RFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 307 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A 380 (471)
++|..+++...... +-....|+.+.-+|++- .+++..+.++....+-.++| +...|..++-.|...++++.|
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 99999999887553 33455666665556553 33333333333323224444 456799999999999999988
Q ss_pred HHHHHhC
Q 012101 381 RAMVEGM 387 (471)
Q Consensus 381 ~~~~~~m 387 (471)
...+-+-
T Consensus 302 ~~tm~~h 308 (449)
T 1b89_A 302 IITMMNH 308 (449)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 7755443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-16 Score=155.48 Aligned_cols=398 Identities=7% Similarity=-0.036 Sum_probs=288.0
Q ss_pred CCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchH
Q 012101 47 HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTL 124 (471)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 124 (471)
.|+....|..++.. .+ .|+++.|+.+|++.-. +.+...|...+..+.+.|++++|..+|++..+.. |+...|
T Consensus 9 ~P~~~~~w~~l~~~-~~---~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw 82 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQ---NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLW 82 (530)
T ss_dssp CTTCHHHHHHHHHH-HH---SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHH
T ss_pred CCCCHHHHHHHHHH-HH---hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHH
Confidence 45444489998884 55 6889999999998743 4566789999999999999999999999998763 677777
Q ss_pred HHHHHHH-hccCCchHHHH----HHHHHHHh-CCCC-CcchHHHHHHHHHh---------cCChhhHHHHhccCCC-CCc
Q 012101 125 PIVLKAS-CQLFALEIGRQ----LHSLAVRL-GLES-NEFCESGFISLYSK---------AGDFEKARKVFDENPE-RKL 187 (471)
Q Consensus 125 ~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~-~~~ 187 (471)
...+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|.++|++..+ |..
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 7666533 45677777665 77766553 5444 45677777776654 6889999999988654 221
Q ss_pred ---chHHHHHHHH-------------HcCCChhHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHcC
Q 012101 188 ---GSWNAIIAGL-------------SQDGRAKEAIDMFIGLK------KCG---FEPDD--------VTMVSVTSACGS 234 (471)
Q Consensus 188 ---~~~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~p~~--------~~~~~li~~~~~ 234 (471)
..|....... .+.+++..|..+++.+. +.. ++|+. ..|...+.....
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 1233222210 12355777777776532 111 34442 344444433221
Q ss_pred ----cCCH----HHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh-------cCChH-------HHHHHHHhcCC---C-
Q 012101 235 ----LGDL----ELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK-------CGRMD-------LAYKVFWEIDQ---P- 288 (471)
Q Consensus 235 ----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~- 288 (471)
.++. ..+..+|++. +... +.+..+|..++..+.+ .|+++ +|..+|++..+ |
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~a--l~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQC--LLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHH--HHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred CCccCCcchhHHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 2233 4677888888 5442 3467788888888875 79987 89999998764 4
Q ss_pred CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 012101 289 NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH--VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYG 365 (471)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 365 (471)
+...|..++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|.++|++..+. .|+ ...|.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~ 394 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYV 394 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHH
Confidence 5778999999999999999999999999985 5542 47888888888899999999999999754 333 23333
Q ss_pred HHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHHHHHHH
Q 012101 366 CMVDL-LGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG----AYVVLSNIYA 438 (471)
Q Consensus 366 ~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~ 438 (471)
..... +...|++++|..+|+.. ...| +...|..++..+.+.|+.++|..+|+++....|.++. .|...+....
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 22222 34689999999999988 4445 5788999999999999999999999999998776654 7777888888
Q ss_pred cCCChHHHHHHHHHhhcCCC
Q 012101 439 SRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~ 458 (471)
+.|+.+.+.++.+++.+.-+
T Consensus 475 ~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHTH
T ss_pred HcCCHHHHHHHHHHHHHHCc
Confidence 99999999999998876544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-18 Score=157.80 Aligned_cols=280 Identities=12% Similarity=0.038 Sum_probs=214.1
Q ss_pred hcCChhhHHH-HhccCCC---C----CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHH
Q 012101 168 KAGDFEKARK-VFDENPE---R----KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 168 ~~g~~~~a~~-~~~~~~~---~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 239 (471)
..|++++|.+ .|++... . +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6664321 1 24467788888888888888888888888764 456677888888888888888
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-HhhHHH---------------HHHHHH
Q 012101 240 LALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN-VSSWTS---------------MIVGYA 301 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~---------------li~~~~ 301 (471)
+|...++.+ .+.. +.+..++..+...|...|++++|...|+++.+ |+ ...+.. .+..+.
T Consensus 116 ~A~~~~~~a--l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRC--LELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHH--HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888 4443 34677788888888888888888888887654 21 122211 233344
Q ss_pred hCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 302 ANGLANEALDCFHYMRESGIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 302 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
..|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999998864221 47888899999999999999999999997652 34567899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHcCCChHHHH
Q 012101 381 RAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS-----------DGAYVVLSNIYASRGLWEEVE 447 (471)
Q Consensus 381 ~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~ 447 (471)
.+.++++ ...| +..++..+..+|.+.|++++|...++++.+..|.+ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999998 4445 57789999999999999999999999999887765 568999999999999999999
Q ss_pred HHHHHh
Q 012101 448 RIRAVM 453 (471)
Q Consensus 448 ~~~~~m 453 (471)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 987643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-16 Score=151.53 Aligned_cols=369 Identities=9% Similarity=-0.047 Sum_probs=294.0
Q ss_pred CChHHHHHHHHHHHhc-ccccCchHHHHHHhcccCCCCchhhHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCcc
Q 012101 48 EDPAKIVATQLSKCTN-LLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTR----LEAPKKALDIYIFMSRAGVLPDCY 122 (471)
Q Consensus 48 ~~~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 122 (471)
.++. ....|-..|.. .+..++..+|...|++.-...+..++..+-..|.. .+++++|++.|++..+.| +..
T Consensus 37 g~~~-a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 37 GEAK-AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp TCHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCHH-HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3445 55566555543 22257899999999877655677889999999998 999999999999998876 566
Q ss_pred hHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHh----cCChhhHHHHhccCCC-CCcchHHHH
Q 012101 123 TLPIVLKASCQ----LFALEIGRQLHSLAVRLGLESNEFCESGFISLYSK----AGDFEKARKVFDENPE-RKLGSWNAI 193 (471)
Q Consensus 123 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l 193 (471)
.+..+-..+.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+ .+..++..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777 789999999999998876 56677778888887 7899999999987654 356688888
Q ss_pred HHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC----cCCHHHHHHHHHHHHHhhcCCCCChhHHHHH
Q 012101 194 IAGLSQ----DGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS----LGDLELALQVHKYVFQVKSKQKSDTLMLNSL 265 (471)
Q Consensus 194 i~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 265 (471)
...|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|..+|+.. .+.+ +...+..+
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a--~~~~---~~~a~~~l 261 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS--AEQG---NSIAQFRL 261 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HTTT---CHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH--HHCC---CHHHHHHH
Confidence 888888 899999999999998875 45566667777764 78999999999998 6554 45667778
Q ss_pred HHHHHh----cCChHHHHHHHHhcCC-CCHhhHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 266 IDMYGK----CGRMDLAYKVFWEIDQ-PNVSSWTSMIVGYAAN-----GLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 266 ~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
...|.. .+++++|...|++..+ .+...+..+...|... +++++|...|++..+.| +...+..+...|
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIY 338 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 888887 8999999999998765 5667788888888887 89999999999999875 345556666666
Q ss_pred ccCC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 012101 336 VHGG---KVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR----AGLLEEARAMVEGMPMKANVVIWGCLMGACEK--- 405 (471)
Q Consensus 336 ~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~--- 405 (471)
...| +.++|.+.|++..+. .+...+..+...|.. .+++++|.+.|++.-...+...+..+...|..
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 6545 889999999999764 456778888899988 89999999999998222367788889999988
Q ss_pred -cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 012101 406 -FGNVKMGEWVAKHLQELEPW---SDGAYVVLSNIYA 438 (471)
Q Consensus 406 -~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 438 (471)
.+++++|...|++..+.++. ++.....+..++.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 89999999999999999854 4444445544444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-18 Score=157.31 Aligned_cols=261 Identities=10% Similarity=-0.037 Sum_probs=212.5
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHH
Q 012101 186 KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSL 265 (471)
Q Consensus 186 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 265 (471)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++ .+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRC--LELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--HhcC-CCCHHHHHHH
Confidence 45568888999999999999999999998764 557788889999999999999999999998 5543 3457788999
Q ss_pred HHHHHhcCChHHHHHHHHhcCC--CC-----------HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHH
Q 012101 266 IDMYGKCGRMDLAYKVFWEIDQ--PN-----------VSSWTSMIVGYAANGLANEALDCFHYMRESGIR-PNHVTFVGV 331 (471)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l 331 (471)
..+|...|++++|...|+++.+ |+ ...+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999988765 21 123334578889999999999999999987422 157889999
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 409 (471)
...+...|++++|.+.++++.+.. +.+..+|..+..+|...|++++|.+.|+++ ...| +..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999998752 345778999999999999999999999998 5555 478999999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 410 KMGEWVAKHLQELEPW------------SDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
++|...++++.+..|. +...|..+..++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999987654 246788999999999999999888765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-16 Score=143.60 Aligned_cols=271 Identities=9% Similarity=0.008 Sum_probs=214.2
Q ss_pred HHHHhcCChhhHHHHhccCCCCCcc----hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHH
Q 012101 164 SLYSKAGDFEKARKVFDENPERKLG----SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 239 (471)
+-....|++..|+..++.....+.. ....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 3445678889999888776554322 4456778899999999998866542 3667778888888899999999
Q ss_pred HHHHHHHHHHHhhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 012101 240 LALQVHKYVFQVKSKQ-KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRE 318 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 318 (471)
.|.+.++.+ ...+. +.+...+..+..+|...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.++++.+
T Consensus 83 ~A~~~l~~l--l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 83 AIVAELDRE--MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHH--HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999988 66654 33566777788999999999999999998 56778899999999999999999999999998
Q ss_pred cCCCCCHHHH---HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CH
Q 012101 319 SGIRPNHVTF---VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NV 393 (471)
Q Consensus 319 ~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 393 (471)
.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.|++. ...| +.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 73 554321 123344456699999999999998763 467788999999999999999999999998 5555 67
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 012101 394 VIWGCLMGACEKFGNVKM-GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
.++..++..+...|+.++ +.++++++.+..|.++. +.+...+.+.++++..-|
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 789999999999999875 67999999999998763 344566666666665544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-16 Score=153.88 Aligned_cols=366 Identities=11% Similarity=-0.069 Sum_probs=196.5
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHC-----C--CCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhC---C--
Q 012101 86 AFHWNNIIRLYTRLEAPKKALDIYIFMSRA-----G--VLP-DCYTLPIVLKASCQLFALEIGRQLHSLAVRLG---L-- 152 (471)
Q Consensus 86 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-- 152 (471)
...||.+-..+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...+++..+.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666666666666666654331 1 112 23455666666666666666666666654421 0
Q ss_pred -CC-CcchHHHHHHHHHhc--CChhhHHHHhccCCC--C-CcchHHHHHHH---HHcCCChhHHHHHHHHHHHCCCCCCH
Q 012101 153 -ES-NEFCESGFISLYSKA--GDFEKARKVFDENPE--R-KLGSWNAIIAG---LSQDGRAKEAIDMFIGLKKCGFEPDD 222 (471)
Q Consensus 153 -~~-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~p~~ 222 (471)
.+ ...++..+..++.+. +++++|.+.|++..+ | +...+..+... +...++.++|++.+++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 01 122333333333332 356666666665432 2 22233333322 334456666666666665542 2233
Q ss_pred HHHHHHHHHH----cCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHH
Q 012101 223 VTMVSVTSAC----GSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTS 295 (471)
Q Consensus 223 ~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 295 (471)
..+..+...+ ...++.++|.+.+++. .... +.+..++..+...|...|++++|...|++..+ .+..++..
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a--l~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEA--LEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHH--HHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 3443333322 2334566666666665 3332 23455566666777777777777777766543 23344444
Q ss_pred HHHHHHh-------------------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcC
Q 012101 296 MIVGYAA-------------------NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ 356 (471)
Q Consensus 296 li~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (471)
+..+|.. .+.++.|...+++..+.. +.+..++..+...+...|++++|.+.|++..+.
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 4433322 123567788888777653 334556777888899999999999999988754
Q ss_pred CCCChhH----HHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 012101 357 IEPRFAH----YGCMVD-LLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAY 430 (471)
Q Consensus 357 ~~p~~~~----~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 430 (471)
.|+... +..+.. .+...|+.++|.+.|++. .+.|+...... ....+.+++++..+.+|.++.+|
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHH
Confidence 343322 222222 234678999999999887 66676443322 23455677788888899999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceee
Q 012101 431 VVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLAT 468 (471)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~ 468 (471)
..++.+|...|++++|++.|++..+.+...+...+|++
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999999988888999986
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=153.61 Aligned_cols=294 Identities=11% Similarity=-0.035 Sum_probs=144.4
Q ss_pred CCCchHHHH-HHHHHHHCCC---CCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh
Q 012101 99 LEAPKKALD-IYIFMSRAGV---LPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK 174 (471)
Q Consensus 99 ~g~~~~A~~-~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 174 (471)
.|++++|++ .|++..+... ..+...+..+...+.+.|++++|...++++.+.. +.+..++..+..+|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 5554433211 1134455666666666666666666666666543 3344556666666666666666
Q ss_pred HHHHhccCC---CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHh
Q 012101 175 ARKVFDENP---ERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQV 251 (471)
Q Consensus 175 a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 251 (471)
|.+.|++.. ..+..++..+...+...|++++|+..++++.... +.+...+..+ +.... . .
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~-------~~~~~-------~--~ 179 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPA-------EEGAG-------G--A 179 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH-------HHHhh-------h--h
Confidence 666665533 2244466666666777777777777777666543 1111111100 00000 0 0
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C---CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 012101 252 KSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P---NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV 326 (471)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 326 (471)
. + ...+..+...+ ..|++++|...|+++.+ | +..++..+...+...|++++|...++++.+.. +.+..
T Consensus 180 ~----~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 180 G----L-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred c----c-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 0 0 00000111112 44455555555544432 2 24445555555555555555555555555432 22344
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC------------CH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA------------NV 393 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------------~~ 393 (471)
.+..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++ ...| ..
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 55555555556666666666666554431 223445555666666666666666666555 1111 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
.+|..+..++...|++++|..++++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 56666666666666666666665533
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-19 Score=161.61 Aligned_cols=281 Identities=12% Similarity=0.078 Sum_probs=110.5
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHH
Q 012101 133 QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIG 212 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 212 (471)
+.|++++|.++++++ ++..+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445667777777765 22346777777777777777777777543 4555777777777777777777776666
Q ss_pred HHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhh
Q 012101 213 LKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSS 292 (471)
Q Consensus 213 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 292 (471)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+++.|...|++++|...|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN 150 (449)
T ss_dssp ------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT-----TC
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hh
Confidence 5553 4456667777777777777777666542 245557777777777788888888777766 37
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLG 372 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 372 (471)
|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+ ...+.....++..|.
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQ 218 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHH
Confidence 777777888888888888777776 26677777778888888887775544432 122233446777778
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-----CCCchHHHHHHHHHcCCCh
Q 012101 373 RAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF--GNVKMGEWVAKHLQELEP-----WSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~ 443 (471)
+.|++++|..+++.. +..+ ....|.-+..+|++- ++..+..+.|..-....+ .+...|.-++..|.+.+++
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 888888887777776 4443 445666665555543 344444444443222223 3456777778888888888
Q ss_pred HHHHHH
Q 012101 444 EEVERI 449 (471)
Q Consensus 444 ~~A~~~ 449 (471)
+.|...
T Consensus 299 d~A~~t 304 (449)
T 1b89_A 299 DNAIIT 304 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-15 Score=148.12 Aligned_cols=368 Identities=9% Similarity=-0.039 Sum_probs=267.1
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 163 (471)
.+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 57789999998 478999999999999998763 4466789999999999999999999999998754 5777777776
Q ss_pred HH-HHhcCChhhHHH----HhccCC------CCCcchHHHHHHHHHc---------CCChhHHHHHHHHHHHCCCCCCHH
Q 012101 164 SL-YSKAGDFEKARK----VFDENP------ERKLGSWNAIIAGLSQ---------DGRAKEAIDMFIGLKKCGFEPDDV 223 (471)
Q Consensus 164 ~~-~~~~g~~~~a~~----~~~~~~------~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~ 223 (471)
.. ....|+.+.|.+ +|+... ..+...|...+..... .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 43 345677777665 665431 1234567777776554 688999999999998731111123
Q ss_pred HHHHHHHH---H----------cCcCCHHHHHHHHHHHHH----hhcC---CCCC--------hhHHHHHHHHHHhc---
Q 012101 224 TMVSVTSA---C----------GSLGDLELALQVHKYVFQ----VKSK---QKSD--------TLMLNSLIDMYGKC--- 272 (471)
Q Consensus 224 ~~~~li~~---~----------~~~~~~~~a~~~~~~~~~----~~~~---~~~~--------~~~~~~l~~~~~~~--- 272 (471)
.|...... + .+.+++..|..+++.... .+.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 33322221 1 234567777777766321 2211 2333 24555555433322
Q ss_pred -CCh----HHHHHHHHhcCC---CCHhhHHHHHHHHHh-------CCChh-------HHHHHHHHHHHcCCCCCHHHHHH
Q 012101 273 -GRM----DLAYKVFWEIDQ---PNVSSWTSMIVGYAA-------NGLAN-------EALDCFHYMRESGIRPNHVTFVG 330 (471)
Q Consensus 273 -g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~ 330 (471)
++. +.+..+|++... .+...|..++..+.+ .|+++ +|..++++..+.-.+-+...+..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 366777877664 466788888887775 79987 89999999886322335778888
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHh
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNVYQIEPRF--AHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGA-CEK 405 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~-~~~ 405 (471)
++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 888899999999999999999864 5542 47888999999999999999999998 54443 3333332222 346
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 406 FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
.|+.++|..+|++..+..|.++..|..++..+.+.|+.++|..+|++....+.
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 89999999999999999998889999999999999999999999999988754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-17 Score=148.02 Aligned_cols=261 Identities=8% Similarity=-0.086 Sum_probs=193.0
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 012101 188 GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLID 267 (471)
Q Consensus 188 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (471)
..+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+ .+.. +.+..++..+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHA--RMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcC-cCCHHHHHHHHH
Confidence 345566666666677777777776666543 335556666666666777777777777766 3332 234556666667
Q ss_pred HHHhcCChHHHHHHHHhcCC--C-CHhhHHHH--------------HH-HHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQ--P-NVSSWTSM--------------IV-GYAANGLANEALDCFHYMRESGIRPNHVTFV 329 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 329 (471)
.|...|++++|...|+++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 77777777777777766543 1 11222222 22 3667788999999999998764 34677888
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG 407 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~ 407 (471)
.+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++ ...| +..++..+..++...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 88899999999999999999997652 345678889999999999999999999998 4444 5778999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 408 NVKMGEWVAKHLQELEPW------------SDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 408 ~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
++++|...++++.+..|. ++..+..++.+|.+.|++++|.+++++..+
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999998887 566888999999999999999999876543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=148.56 Aligned_cols=258 Identities=11% Similarity=0.001 Sum_probs=144.9
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC---CCCcchHHHHHHHHHc
Q 012101 123 TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP---ERKLGSWNAIIAGLSQ 199 (471)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~ 199 (471)
.+..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.|++.. ..+..+|..+...|..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 34444445555555555555555554433 2334445555555555555555555554432 1233456666666666
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC-CChhHHHHHHH
Q 012101 200 DGRAKEAIDMFIGLKKCGFEPD-----------DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK-SDTLMLNSLID 267 (471)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~ 267 (471)
.|++++|+..|+++.+.. |+ ...+..+...+...|++++|...++++ .+.... .+..++..+..
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--l~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA--AHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHH--HHHSCSSCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH--HHhCcCccCHHHHHHHHH
Confidence 666666666666665531 21 122334466677777788888887777 444322 14666777777
Q ss_pred HHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEG 344 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (471)
.|...|++++|...|++..+ .+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 77777777777777776543 345667777777777777777777777776652 22356666677777777777777
Q ss_pred HHHHHHhHHhcCCC----------CChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012101 345 KHFFEMMKNVYQIE----------PRFAHYGCMVDLLGRAGLLEEARAMVEG 386 (471)
Q Consensus 345 ~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 386 (471)
...|+++.+...-. .+...|..+..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777765432110 0134555666666666666666555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=142.47 Aligned_cols=249 Identities=12% Similarity=0.060 Sum_probs=203.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 012101 194 IAGLSQDGRAKEAIDMFIGLKKCGFEPDD--VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK 271 (471)
Q Consensus 194 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (471)
++-....|+++.|+..++..... .|+. .....+..+|...|+++.|...++ ...+|+...+..+...+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~------~~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIK------PSSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSC------TTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhc------ccCChhHHHHHHHHHHHcC
Confidence 44566789999999999876543 4543 355677889999999999987542 2355677888999999999
Q ss_pred cCChHHHHHHHHhcC----CC-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHH
Q 012101 272 CGRMDLAYKVFWEID----QP-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
.|+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999864 24 456677778999999999999999987 4577888899999999999999999
Q ss_pred HHHHhHHhcCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 347 FFEMMKNVYQIEPRFAHY---GCMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 347 ~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
.++.+.+. .|+.... ...+..+...|++++|..+|+++ ..+.+...++.+..++.+.|++++|+..++++.+
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999865 4654321 22334445569999999999999 3344778999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHcCCChHH-HHHHHHHhhcCCCc
Q 012101 422 LEPWSDGAYVVLSNIYASRGLWEE-VERIRAVMKHRNLA 459 (471)
Q Consensus 422 ~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~ 459 (471)
..|.++.++..++.++...|+.++ +.++++++.+.++.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999976 57899988876553
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-18 Score=171.53 Aligned_cols=165 Identities=12% Similarity=0.158 Sum_probs=128.1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhcC-------CCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 255 QKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID-------QPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 255 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
...-..+|+++|++||+.|++++|.++|.+|. .||+.|||+||.+||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33446689999999999999999999997653 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCcH-HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHH
Q 012101 328 FVGVLSACVHGGKV-QEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMK----ANVVIWGCLMGA 402 (471)
Q Consensus 328 ~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~l~~~ 402 (471)
|+++|.++++.|+. +.|.++|++|.+. |+.||..+|++++.++.+.+-++.+.++...+... |...+...|.+.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999999874 7899999999776 99999999999988777765555555554444111 123344455566
Q ss_pred HHhcC---------CHHHHHHHHHHHH
Q 012101 403 CEKFG---------NVKMGEWVAKHLQ 420 (471)
Q Consensus 403 ~~~~~---------~~~~a~~~~~~~~ 420 (471)
|.+.+ ..++-...|++=.
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHHH
Confidence 66555 2355555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-15 Score=138.42 Aligned_cols=275 Identities=8% Similarity=-0.072 Sum_probs=161.3
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFIS 164 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 164 (471)
+...|......+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44556777778888888888888888887654 2355667777777777888888888888777653 334445555555
Q ss_pred HHHhcCChhhHHHHhccCCCCC---cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHcCcCCHH
Q 012101 165 LYSKAGDFEKARKVFDENPERK---LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSV-TS-ACGSLGDLE 239 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~-~~~~~~~~~ 239 (471)
.|...|++++|.+.+++..+.+ ...+..+... .|+......+ .. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 5555555555555554432211 1111111000 0111111111 11 266777788
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHH
Q 012101 240 LALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYM 316 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 316 (471)
+|...++.+ .+.. +.+..++..+...|...|++++|...++++.+ .+..+|..+...+...|++++|...++++
T Consensus 156 ~A~~~~~~~--~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAA--LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHH--HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888777 4433 23556677777777777777777777766543 34556666777777777777777777776
Q ss_pred HHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC----------ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012101 317 RESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP----------RFAHYGCMVDLLGRAGLLEEARAMVEG 386 (471)
Q Consensus 317 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 386 (471)
.+.. +.+...+..+...+...|++++|.+.++++.+...-.. +...|..+..++.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6542 23455666666667777777777777776654421100 244555666666666666666666654
Q ss_pred C
Q 012101 387 M 387 (471)
Q Consensus 387 m 387 (471)
.
T Consensus 312 ~ 312 (327)
T 3cv0_A 312 N 312 (327)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-14 Score=142.72 Aligned_cols=352 Identities=14% Similarity=0.067 Sum_probs=257.9
Q ss_pred CCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCC-----chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 012101 47 HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYS-----AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDC 121 (471)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 121 (471)
..+|. --...+..|.. .|...+|..+++++...| +....|.++....+. +..+..+..++....
T Consensus 982 ~~~Pe-eVs~~vKaf~~---aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------ 1050 (1630)
T 1xi4_A 982 TQDPE-EVSVTVKAFMT---ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------ 1050 (1630)
T ss_pred ccCHH-HhHHHHHHHHh---CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc------
Confidence 34444 33556666766 666777777777664322 234455566666555 445555555554321
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCC
Q 012101 122 YTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDG 201 (471)
Q Consensus 122 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 201 (471)
....+...+...|.+++|..+|++.. ......+.+ +-..+++++|.++.++.. +..+|..+..++...|
T Consensus 1051 -d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1051 -DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred -cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 13335667777888888888888742 111112222 226788888888888763 3568889999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012101 202 RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKV 281 (471)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (471)
++++|++.|.+. -|...|..++.++.+.|++++|.+.+... .+.. ++..+.+.++.+|++.+++++...+
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA--rk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA--RKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH--Hhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 999999999653 56778888999999999999999999877 4443 3333444688999999998865554
Q ss_pred HHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh
Q 012101 282 FWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF 361 (471)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 361 (471)
. ..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+.
T Consensus 1190 I---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~ 1250 (1630)
T 1xi4_A 1190 I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NST 1250 (1630)
T ss_pred H---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCH
Confidence 3 4567777778889999999999999999984 37889999999999999999999877 345
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC-
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR- 440 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 440 (471)
.+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++....+++.+...|.-|..+|++.
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence 7888888899999999999887664 4446667778999999999999999999999988887777887777777754
Q ss_pred -CChHHHHHHHH
Q 012101 441 -GLWEEVERIRA 451 (471)
Q Consensus 441 -g~~~~A~~~~~ 451 (471)
++..++.+.|.
T Consensus 1329 peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1329 PQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHH
Confidence 45556666555
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-14 Score=143.74 Aligned_cols=375 Identities=10% Similarity=0.075 Sum_probs=278.2
Q ss_pred HHHHHHhhhchhhhhHHHHhhhccC--CCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHh
Q 012101 21 LLHRLCKTHTFRKHVTISAASSFLD--THEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTR 98 (471)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 98 (471)
..+++.....+..+..+.+....-+ +..+.. +.+.|+.+-.+. +.++..+....++. .-..-+...+..
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~-LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRN-LQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAIS 1061 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHH-HHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHh
Confidence 3444555555566666655443211 223455 777788777763 34445555444431 114457888899
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHH
Q 012101 99 LEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKV 178 (471)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 178 (471)
.|.+++|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++...|++++|.+.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999852 11122233322 678899999998865 3467889999999999999999999
Q ss_pred hccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC
Q 012101 179 FDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD 258 (471)
Q Consensus 179 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 258 (471)
|.+. .|...|..++.++.+.|++++|++.|...++.. ++....+.++.+|++.++++....+ ++ .++
T Consensus 1128 YiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f------I~---~~n 1194 (1630)
T 1xi4_A 1128 YIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF------IN---GPN 1194 (1630)
T ss_pred HHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH------Hh---CCC
Confidence 9664 677789999999999999999999999887764 4433344588899999988854443 21 235
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC
Q 012101 259 TLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG 338 (471)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 338 (471)
...+..+.+.|...|++++|..+|... ..|..+..++++.|++++|.+.+++. .+..+|..+-.+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 556777999999999999999999996 48999999999999999999999876 3668999999999999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh--cCCHHHHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEK--FGNVKMGEW 414 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~--~~~~~~a~~ 414 (471)
|++..|......+ ..+...+..++..|.+.|.+++|..+++.. +..|. ...|.-+...+++ -++..++.+
T Consensus 1264 ~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999998876654 345566779999999999999999999887 66653 3466666666654 445566666
Q ss_pred HHHHHHhcCC-----CCCchHHHHHHHHHcCCChHHHHH
Q 012101 415 VAKHLQELEP-----WSDGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 415 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
+|..-....+ .+...|.-++..|.+.|+++.|..
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6664444333 345678899999999999999984
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-18 Score=167.50 Aligned_cols=128 Identities=14% Similarity=0.086 Sum_probs=116.5
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccC------CCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLH------SYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPI 126 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 126 (471)
+||+||++|++ .|++++|..+|++|. ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 129 TynaLIdglcK---~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 129 RLLAFFKCCLL---TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHH---HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 89999999999 788999999997753 369999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCc-hHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC
Q 012101 127 VLKASCQLFAL-EIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP 183 (471)
Q Consensus 127 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 183 (471)
+|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 99999999985 7899999999999999999999999988887766666666655544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-15 Score=141.64 Aligned_cols=376 Identities=9% Similarity=-0.089 Sum_probs=238.9
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC-----------CCCchhhHHHHHHHHHhCCCchHHH
Q 012101 38 SAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH-----------SYSAAFHWNNIIRLYTRLEAPKKAL 106 (471)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~ 106 (471)
.......+...... +||.|-..+.. .|+.++|+..|++.- .+....+|+.+...|...|++++|.
T Consensus 39 ~~~~~~~~~~~~a~-~yn~Lg~~~~~---~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~ 114 (472)
T 4g1t_A 39 FYRTEFQNREFKAT-MCNLLAYLKHL---KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114 (472)
T ss_dssp HHHTTSCC---CCH-HHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCChhHHH-HHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHH
Confidence 33344455555566 89999999988 788999988886531 2234668999999999999999999
Q ss_pred HHHHHHHHC-----C-CCC-CcchHHHHHHHHhc--cCCchHHHHHHHHHHHhCCCCCcchHHHHHHH---HHhcCChhh
Q 012101 107 DIYIFMSRA-----G-VLP-DCYTLPIVLKASCQ--LFALEIGRQLHSLAVRLGLESNEFCESGFISL---YSKAGDFEK 174 (471)
Q Consensus 107 ~~~~~m~~~-----g-~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~ 174 (471)
..+++..+. + ..+ ...++.....++.. .+++++|...|++..+.. |.+...+..+..+ +...++.++
T Consensus 115 ~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHH
Confidence 999887542 1 111 23445544444433 457999999999999865 3344555555544 345577788
Q ss_pred HHHHhccCC---CCCcchHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHH
Q 012101 175 ARKVFDENP---ERKLGSWNAIIAGLSQ----DGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKY 247 (471)
Q Consensus 175 a~~~~~~~~---~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 247 (471)
|.+.+++.. ..+..++..+...+.. .|+.++|.+.+++..... +.+...+..+...+...|++++|...++.
T Consensus 194 al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp THHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 888887643 3344456555555443 467889999999888764 55677888999999999999999999999
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhc-------------------CChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCC
Q 012101 248 VFQVKSKQKSDTLMLNSLIDMYGKC-------------------GRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGL 305 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 305 (471)
. .+.. +.+..++..+..+|... +.++.|...|++..+ .+..++..+...+...|+
T Consensus 273 a--l~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 273 A--LEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp H--HHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred H--HHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 8 5543 33566677676666432 235567777766543 455788889999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 012101 306 ANEALDCFHYMRESGIRPNHV--TFVGVLS-ACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARA 382 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 382 (471)
+++|...|++..+....|... .+..+.. .....|+.++|+..|++..+ +.|+....... ...+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHH
Confidence 999999999998865444322 1222221 23567999999999999875 35664333222 233344
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 383 MVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 383 ~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
+++.. ...| +..+|..+..+|...|++++|.+.|++..+.++.+|..+..++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 44444 3334 5678999999999999999999999999999988776665543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=127.74 Aligned_cols=217 Identities=9% Similarity=-0.036 Sum_probs=130.0
Q ss_pred HHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C----C----HhhHHH
Q 012101 226 VSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P----N----VSSWTS 295 (471)
Q Consensus 226 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~ 295 (471)
..+...+...|++++|...++.. .+.. .+...+..+..+|...|++++|...|++..+ | + ..+|..
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a--~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKA--WELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH--HHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHH--HHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 33334444444444444444444 2222 3334444444444444444444444444332 1 1 345556
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 012101 296 MIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG 375 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 375 (471)
+...+...|++++|...+++..+. .|+.. .+...|++++|...++.+... .+.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 666666666666776666666654 33322 234456677777777776542 1223445666777777777
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 376 LLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 376 ~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
++++|.+.+++. ...| +..++..+..++...|++++|...++++.+..|.++..+..++.+|.+.|++++|.+.+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777777776 3333 46677777777777788888888888877777777777777777788888888888777777
Q ss_pred hcCC
Q 012101 454 KHRN 457 (471)
Q Consensus 454 ~~~~ 457 (471)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=126.22 Aligned_cols=235 Identities=10% Similarity=-0.064 Sum_probs=185.7
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC----hhHHH
Q 012101 188 GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD----TLMLN 263 (471)
Q Consensus 188 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 263 (471)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++...+......++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 357778888888899999999998888776 777888888888888999999999988884333333222 46788
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcH
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKV 341 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 341 (471)
.+...|...|++++|...|++..+ |+. ..+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 888899999999999999888765 442 34566788999999999988752 23456777788889999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 342 QEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 342 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
++|...++++.+.. +.+...+..+...|...|++++|.+.+++. ...| +..++..+..++...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999997652 345678888999999999999999999988 4444 5778999999999999999999999999
Q ss_pred HhcC------CCCCchHHHHH
Q 012101 420 QELE------PWSDGAYVVLS 434 (471)
Q Consensus 420 ~~~~------~~~~~~~~~l~ 434 (471)
.+.. |.+...+..+.
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHH
Confidence 8887 65444444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-14 Score=123.18 Aligned_cols=195 Identities=15% Similarity=0.036 Sum_probs=148.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012101 256 KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVL 332 (471)
Q Consensus 256 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 332 (471)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34566677777788888888888888887654 455677778888888888888888888888763 23456777777
Q ss_pred HHhccC-----------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 012101 333 SACVHG-----------GKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCL 399 (471)
Q Consensus 333 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 399 (471)
.++... |++++|...+++..+. .| +...+..+..+|...|++++|.+.|++. .+..+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 778888 9999999999999865 34 4567888899999999999999999998 222688899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 400 MGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
..++...|++++|...++++.+..|.++..+..++.++.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-14 Score=126.30 Aligned_cols=241 Identities=10% Similarity=-0.066 Sum_probs=181.2
Q ss_pred cCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 012101 199 QDGRAKEAIDMFIGLKKCGFE---PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRM 275 (471)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 275 (471)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+ .+.. +.+..++..+...|...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--l~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA--LAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHH--HHcC-CCcHHHHHHHHHHHHHccCH
Confidence 346788888888888775321 13556777788888888888888888888 5443 33577888888888888999
Q ss_pred HHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 276 DLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 276 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
++|...|++..+ .+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999888887764 45678888889999999999999999998875 4554444445555567799999999998876
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 353 NVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 353 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
... +++...+ .++..+...++.++|.+.++.. ...|+ ..++..+..++...|++++|...++++.+..|.+
T Consensus 172 ~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 652 3343344 4777778888889999998887 44442 5788889999999999999999999999988765
Q ss_pred CchHHHHHHHHHcCCChHHHHHHH
Q 012101 427 DGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
.. ....++...|++++|.+.+
T Consensus 249 ~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CH---HHHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHHhhHHHH
Confidence 43 3466777888899988776
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=122.97 Aligned_cols=242 Identities=11% Similarity=-0.001 Sum_probs=119.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHH
Q 012101 192 AIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD--TLMLNSLIDMY 269 (471)
Q Consensus 192 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 269 (471)
.....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.. ......++ ...|..+...|
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETY--FSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHH--HTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHH--HhccCchhHHHHHHHHHHHHH
Confidence 33444444555555555555544432 122224444444445555555555555544 33111111 11244445555
Q ss_pred HhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHH
Q 012101 270 GKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
...|++++|...|++..+ .+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544432 233445555555555555555555555544431 1223333333312222336666666
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCHHHHH
Q 012101 347 FFEMMKNVYQIEPRFAHYGCMVDLLGRAGL---LEEARAMVEGM----PMKAN------VVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 347 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~l~~~~~~~~~~~~a~ 413 (471)
.|+++.+.. +.+...+..+...+...|+ +++|...+++. ...|+ ..+|..+...|...|++++|.
T Consensus 164 ~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666655431 1223444445555555554 44455554444 11122 246777778888888888888
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 414 WVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
..++++.+..|.++..+..+......
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 88888888888877666666555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-13 Score=119.12 Aligned_cols=197 Identities=8% Similarity=-0.095 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
..+..+...|...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 4455556666666666666666665542 345566666666667777777777777666553 224556666666666
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 413 (471)
..|++++|.++++++.. .+..| +...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776654 12333 3445566666677777777777777666 2233 4556666777777777777777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 414 WVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
..++++.+..|.+...+..++.+|.+.|++++|.+.++++.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 777777776666666666777777777777777777777765543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-13 Score=115.49 Aligned_cols=197 Identities=11% Similarity=-0.016 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 259 TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34455555556666666666666655432 334556666666666666666666666666542 23455666666666
Q ss_pred ccC-CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 012101 336 VHG-GKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 336 ~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~ 411 (471)
... |++++|...++++.+ .+..|+ ...+..+...+...|++++|.+.++++ ...| +...+..+..++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 667 777777777776654 122232 345666666677777777777777666 3333 35566667777777777777
Q ss_pred HHHHHHHHHhcCC-CCCchHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 412 GEWVAKHLQELEP-WSDGAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 412 a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
|...++++.+..| .++..+..+...+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 7777777777666 666666666666777777777777777765543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-14 Score=123.80 Aligned_cols=195 Identities=11% Similarity=0.005 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
.+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 344444445555555555555554432 234445555555555555555555555555442 2234455555555555
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566666666665554431 223445555555556666666666665555 2222 444555555666666666666666
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 416 AKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
++++.+..|.++..+..++.+|.+.|++++|.+.++++.+...
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 6666666555555566666666666666666666666555433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-13 Score=130.36 Aligned_cols=376 Identities=10% Similarity=-0.006 Sum_probs=223.5
Q ss_pred HHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCc---hHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 012101 57 QLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAP---KKALDIYIFMSRAGVLPDCYTLPIVLKASCQ 133 (471)
Q Consensus 57 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 133 (471)
+...+.+ .|++++|...|++.-...+..++..+-..|...|+. ++|+..|++..+. +...+..+...+..
T Consensus 9 la~~~~~---~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALK---RGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445555 678899999998876555666777777777778888 8999999888754 45555556554444
Q ss_pred cC-----CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh---HHHHhccCCC-CCcchHHHHHHHHHcCCChh
Q 012101 134 LF-----ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK---ARKVFDENPE-RKLGSWNAIIAGLSQDGRAK 204 (471)
Q Consensus 134 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~ 204 (471)
.+ ++++|...|++..+.| +...+..|...|...+..++ +.+.+....+ .+...+..+...|...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 43 7788999999988866 23366677777777665443 3444443332 34557777888888877655
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcC---CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc----CChHH
Q 012101 205 EAIDMFIGLKKCGFEPDDVTMVSVTSACGSLG---DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKC----GRMDL 277 (471)
Q Consensus 205 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 277 (471)
++......+.+.-...+...+..+...|...| +.++|.+.|+.. ...+. ++...+..+...|... +++++
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a--a~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG--VSRGT-VTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTTC-SCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH--HHCCC-HHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 55544333332212223336677777777788 888888888887 55553 3444445667777554 68888
Q ss_pred HHHHHHhcCCCCHhhHHHHHHH-H--HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC-----cHHHHHHHHH
Q 012101 278 AYKVFWEIDQPNVSSWTSMIVG-Y--AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG-----KVQEGKHFFE 349 (471)
Q Consensus 278 A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~ 349 (471)
|..+|++....+...+..+... + ...+++++|...|++..+.| +...+..+-..|. .| ++++|.+.|+
T Consensus 236 A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 236 AQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 8888887774345566666665 3 35788888888888888776 4445555555554 34 8888888888
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 012101 350 MMKNVYQIEPRFAHYGCMVDLLGR----AGLLEEARAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQE 421 (471)
Q Consensus 350 ~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 421 (471)
+.. .-+...+..|...|.. ..++++|..+|+..-..-+......|...|.. ..|.++|...+++..+
T Consensus 312 ~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 312 KAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp TTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 875 2345556666666655 34888888888887212234455556555553 4578888888888888
Q ss_pred cCCCCCchHHHHHHHH--HcCCChHHHHHHHHHhhcC
Q 012101 422 LEPWSDGAYVVLSNIY--ASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 422 ~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 456 (471)
.+... ....+..+. ...++.++|.++.++....
T Consensus 387 ~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 387 QDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 77533 222232222 2334666777777665554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.6e-14 Score=132.44 Aligned_cols=266 Identities=13% Similarity=0.019 Sum_probs=169.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCC---CCChhHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD----VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQ---KSDTLML 262 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 262 (471)
+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...+++..+..... +.....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445556666677777777776666652 1222 345566666666777777777766663221111 1223456
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC---------CCHhhHHHHHHHHHhCCC-----------------hhHHHHHHHHH
Q 012101 263 NSLIDMYGKCGRMDLAYKVFWEIDQ---------PNVSSWTSMIVGYAANGL-----------------ANEALDCFHYM 316 (471)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m 316 (471)
..+...|...|++++|...|++..+ ....++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 6666777777777777777766543 112356666777777777 77777777765
Q ss_pred HHc----CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 317 RES----GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 317 ~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
.+. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 1111 2235666677778888888888888777553211112 225677778888888888888888776
Q ss_pred -CCC---C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 388 -PMK---A----NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS------DGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 388 -~~~---p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
... . ...++..+...+...|++++|...+++..+..+.. ...+..++.+|.+.|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111 1 24567778888888888888888888887654221 236777888888888888888888877
Q ss_pred hcC
Q 012101 454 KHR 456 (471)
Q Consensus 454 ~~~ 456 (471)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-12 Score=114.68 Aligned_cols=222 Identities=10% Similarity=-0.085 Sum_probs=108.0
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC----cCCHHHHHHHHHHHHHhhcCCCCChhHH
Q 012101 187 LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS----LGDLELALQVHKYVFQVKSKQKSDTLML 262 (471)
Q Consensus 187 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 262 (471)
..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|++. .+.+ +...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a--~~~~---~~~a~ 77 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA--CDLN---YSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTT---CHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH--HHCC---CHHHH
Confidence 345555666666666666666666666652 233445555555555 66666666666665 4333 34455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhcCC-CCHhhHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 263 NSLIDMYGK----CGRMDLAYKVFWEIDQ-PNVSSWTSMIVGYAA----NGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 263 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555555 5555555555554432 234444444455554 555555555555554443 2333333333
Q ss_pred Hhcc----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 012101 334 ACVH----GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR----AGLLEEARAMVEGM-PMKANVVIWGCLMGACE 404 (471)
Q Consensus 334 ~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~ 404 (471)
.|.. .+++++|...|++..+. .+...+..+...|.. .+++++|.+.|++. ... +...+..+...|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 3433 44555555555544332 122333344444444 44444444444443 111 1333344444444
Q ss_pred h----cCCHHHHHHHHHHHHhcCC
Q 012101 405 K----FGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 405 ~----~~~~~~a~~~~~~~~~~~~ 424 (471)
. .+++++|.+.+++..+.+|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCcccCHHHHHHHHHHHHHcCC
Confidence 4 4444444444444444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.4e-13 Score=126.53 Aligned_cols=341 Identities=9% Similarity=-0.027 Sum_probs=230.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFAL---EIGRQLHSLAVRLGLESNEFCESGFISLYS 167 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 167 (471)
.+...+.+.|++++|+++|++..+.| +...+..+-..+...|+. ++|...|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677888999999999999998876 344555565666667777 8999999998854 5556666766555
Q ss_pred hcC-----ChhhHHHHhccCCCC-CcchHHHHHHHHHcCCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCH
Q 012101 168 KAG-----DFEKARKVFDENPER-KLGSWNAIIAGLSQDGRAK---EAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDL 238 (471)
Q Consensus 168 ~~g-----~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 238 (471)
..+ +.++|.+.|++..++ +...+..|...|...+..+ ++.+.+......|. ......+...|...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 555 788999999886554 4457888888888776544 34555555554443 33455566666666644
Q ss_pred ----HHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhC----C
Q 012101 239 ----ELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG---RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAAN----G 304 (471)
Q Consensus 239 ----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~ 304 (471)
+.+..+++.. ...++..+..+...|.+.| ++++|...|++..+ ++...+..+...|... +
T Consensus 158 ~~~~~~a~~~~~~a------~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 158 DQHLDDVERICKAA------LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGHHHHHHHHHHH------TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred ccCHHHHHHHHHHH------HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 4444444443 2233447888999999999 89999999987754 4445446677777554 6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-h--ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----C
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSA-C--VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG-----L 376 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~ 376 (471)
++++|...|++.. .| +...+..+... + ...+++++|.+.|++..+. | +...+..+...|. .| +
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCC
Confidence 8999999999987 43 33444444444 3 4589999999999999764 3 5667777777777 55 9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc----CCChHHHHH
Q 012101 377 LEEARAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS----RGLWEEVER 448 (471)
Q Consensus 377 ~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 448 (471)
+++|.+.|++.- .-+...+..|...|.. ..++++|...|++..+.+ ++.....|+.+|.. ..+.++|..
T Consensus 303 ~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 999999999998 6678888888877776 349999999999998866 45678889999885 458999999
Q ss_pred HHHHhhcCCCc
Q 012101 449 IRAVMKHRNLA 459 (471)
Q Consensus 449 ~~~~m~~~~~~ 459 (471)
+++...+.|..
T Consensus 380 ~~~~A~~~g~~ 390 (452)
T 3e4b_A 380 FSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHTTCCH
T ss_pred HHHHHHHCCCH
Confidence 99999988764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-13 Score=127.77 Aligned_cols=269 Identities=10% Similarity=-0.001 Sum_probs=132.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHhccCCC--C-C----cchHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCC-HHHH
Q 012101 158 CESGFISLYSKAGDFEKARKVFDENPE--R-K----LGSWNAIIAGLSQDGRAKEAIDMFIGLKKC----GFEPD-DVTM 225 (471)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~ 225 (471)
.+......+...|++++|...|++..+ + + ...|..+...+...|++++|...+++.... +-.|. ..++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344455566666666666666655332 1 2 124555666666666666666666654332 11111 2344
Q ss_pred HHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC---ChhHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 012101 226 VSVTSACGSLGDLELALQVHKYVFQVKSKQKS---DTLMLNSLIDMYGKCGR--------------------MDLAYKVF 282 (471)
Q Consensus 226 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 282 (471)
..+...+...|++++|...++........... ...++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 55555566666666666666655222111110 12345555556666666 55555555
Q ss_pred HhcCC-----CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhccCCcHHHHHHHH
Q 012101 283 WEIDQ-----PN----VSSWTSMIVGYAANGLANEALDCFHYMRESGI-RPN----HVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 283 ~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
++..+ .+ ..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44322 11 23445555555556666666666555543210 011 124444555555556666666655
Q ss_pred HHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 012101 349 EMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM----PMKAN----VVIWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 349 ~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
++..+...-.++ ..++..+...|...|++++|.+.+++. ...++ ..++..+...|...|++++|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555432111111 234445555555556666555555554 00111 234555555555556666666666
Q ss_pred HHHHhcCCCC
Q 012101 417 KHLQELEPWS 426 (471)
Q Consensus 417 ~~~~~~~~~~ 426 (471)
++..+..+..
T Consensus 331 ~~al~~~~~~ 340 (406)
T 3sf4_A 331 EKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555555444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=114.64 Aligned_cols=205 Identities=14% Similarity=0.021 Sum_probs=127.5
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 012101 188 GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLID 267 (471)
Q Consensus 188 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (471)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+ .+.. +
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a--~~~~-~----------- 102 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKA--LASD-S----------- 102 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-T-----------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHC-c-----------
Confidence 356666666666666666666666666542 334555555555666666666666666655 3322 1
Q ss_pred HHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCcHHHHHH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP-NHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
.+...+..+...+...|++++|.++++++.+.+..| +...+..+...+...|++++|.+
T Consensus 103 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 103 --------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 233344445555555566666666666555422233 34455556666667777777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 347 FFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 347 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
.++++.+.. +.+...+..+...|...|++++|...++.+ ...| +...+..+...+...|++++|.+.++++.+..|
T Consensus 163 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 777765542 234556677777777788888888777776 3333 556677777788888888888888888888887
Q ss_pred CCCch
Q 012101 425 WSDGA 429 (471)
Q Consensus 425 ~~~~~ 429 (471)
.++..
T Consensus 241 ~~~~~ 245 (252)
T 2ho1_A 241 GSLEY 245 (252)
T ss_dssp TSHHH
T ss_pred CCHHH
Confidence 66543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-12 Score=112.04 Aligned_cols=224 Identities=10% Similarity=-0.045 Sum_probs=183.9
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcCC-CCHhhHHH
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK----CGRMDLAYKVFWEIDQ-PNVSSWTS 295 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ 295 (471)
+..++..+...+...|++++|...|+.. .+. .+...+..+...|.. .+++++|...|++..+ .+...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a--~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKA--CDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHH--HHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4566777788888889999999999988 553 345678888888998 9999999999988764 46778888
Q ss_pred HHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----CCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 012101 296 MIVGYAA----NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH----GGKVQEGKHFFEMMKNVYQIEPRFAHYGCM 367 (471)
Q Consensus 296 li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 367 (471)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+. + +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHH
Confidence 8888888 999999999999988875 66777778888887 89999999999998764 3 55677778
Q ss_pred HHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 368 VDLLGR----AGLLEEARAMVEGM-PMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 368 i~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
...|.. .+++++|.+.|++. .. .+...+..+...|.. .+++++|...+++..+.++ +..+..+..+|.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 888887 89999999999887 32 356778888888888 8999999999999988765 557888888998
Q ss_pred c----CCChHHHHHHHHHhhcCCCc
Q 012101 439 S----RGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 439 ~----~g~~~~A~~~~~~m~~~~~~ 459 (471)
+ .+++++|.+.+++..+.+..
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8 89999999999988877653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=115.14 Aligned_cols=193 Identities=12% Similarity=-0.052 Sum_probs=107.2
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 163 (471)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++.++.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455677788888888888888888888887754 3356677777778888888888888888888765 44556677777
Q ss_pred HHHHhc-----------CChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012101 164 SLYSKA-----------GDFEKARKVFDENPE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVT 229 (471)
Q Consensus 164 ~~~~~~-----------g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 229 (471)
..+.+. |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 777766 555555555544321 122344444455555555555555555554443 3444444444
Q ss_pred HHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 012101 230 SACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFW 283 (471)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 283 (471)
.++...|++++|...++.. .+.. +.+...+..+..++.+.|++++|...|+
T Consensus 159 ~~~~~~g~~~~A~~~~~~a--l~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKA--LEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHH--HHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHcCCHHHHHHHHHHH--HHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4555555555555555544 2221 1233344444444444444444444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=124.22 Aligned_cols=267 Identities=13% Similarity=0.046 Sum_probs=185.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc--CCC-CChhHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD----DVTMVSVTSACGSLGDLELALQVHKYVFQVKS--KQK-SDTLML 262 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~-~~~~~~ 262 (471)
+......+...|++++|+..|++..+.. +.+ ...+..+...+...|++++|...++...+... +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556677777888888877777653 222 24566677777777888888877776632211 111 124566
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC-----CC----HhhHHHHHHHHHhCCC--------------------hhHHHHHH
Q 012101 263 NSLIDMYGKCGRMDLAYKVFWEIDQ-----PN----VSSWTSMIVGYAANGL--------------------ANEALDCF 313 (471)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~ 313 (471)
..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777788888888888887776543 22 2366777778888888 88888888
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 012101 314 HYMRES----GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMV 384 (471)
Q Consensus 314 ~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 384 (471)
++..+. +..| ....+..+...+...|++++|.+.+++..+...-.++ ...+..+...+...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776432 1112 1345667777888889999999998887643211122 236778888899999999999998
Q ss_pred HhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHcCCChHHHHHHH
Q 012101 385 EGM-PM---KAN----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS------DGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 385 ~~m-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
++. .+ .++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|.+.|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 887 11 112 4577888899999999999999999987754322 236778999999999999999999
Q ss_pred HHhhcCC
Q 012101 451 AVMKHRN 457 (471)
Q Consensus 451 ~~m~~~~ 457 (471)
++..+..
T Consensus 327 ~~a~~~~ 333 (338)
T 3ro2_A 327 EKHLEIS 333 (338)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9887643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-13 Score=118.03 Aligned_cols=209 Identities=12% Similarity=0.055 Sum_probs=132.6
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHH
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVG 299 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 299 (471)
..+..+...+...|++++|...++.+ .+.. +.+...+..+...|...|++++|...|++..+ .+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~--l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKA--IEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHH--HTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHH--HHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 33444444555555555555555555 3321 22344555555556666666666666555432 345566667777
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 012101 300 YAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEE 379 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 379 (471)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHH
Confidence 777777888888777777653 3356667777777888888888888888876542 3356677788888888888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012101 380 ARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIY 437 (471)
Q Consensus 380 A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (471)
|.+.++++ ...| +..++..+..++...|++++|...++++.+..|.++..+..+....
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 88888887 3333 5678888999999999999999999999999988776666554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-13 Score=119.72 Aligned_cols=234 Identities=9% Similarity=-0.058 Sum_probs=187.1
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCH----hhHHHH
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNV----SSWTSM 296 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l 296 (471)
..+......+...|++++|...++.+ .+.. +.+...+..+..+|...|++++|...|++..+ ++. ..|..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~--l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKL--EAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHH--HHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH--HHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34556677888999999999999999 5543 23556788899999999999999999998765 232 348889
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 012101 297 IVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL 376 (471)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+. .+.+...+..+...+...++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998864 335678889999999999999999999999754 23345567677734445569
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCCC-----chHHHHHHHHHcCCCh
Q 012101 377 LEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGN---VKMGEWVAKHLQELE---PWSD-----GAYVVLSNIYASRGLW 443 (471)
Q Consensus 377 ~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~g~~ 443 (471)
+++|.+.|+++ ...| +...+..+..++...|+ +++|...++++.+.. +.+. ..|..++..|.+.|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999998 5555 46788888888988888 888999999988764 3221 4678899999999999
Q ss_pred HHHHHHHHHhhcCCCccCC
Q 012101 444 EEVERIRAVMKHRNLAKIP 462 (471)
Q Consensus 444 ~~A~~~~~~m~~~~~~~~~ 462 (471)
++|.+.++++.+..+....
T Consensus 238 ~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhcCccHHH
Confidence 9999999999887665433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-14 Score=123.92 Aligned_cols=239 Identities=15% Similarity=-0.005 Sum_probs=138.1
Q ss_pred CCCchHHHHHHHHHHHCCCC---CCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhH
Q 012101 99 LEAPKKALDIYIFMSRAGVL---PDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 175 (471)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34555555555555543211 123344445555555555555555555555543 33444555555555556666666
Q ss_pred HHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhh
Q 012101 176 RKVFDENPE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVK 252 (471)
Q Consensus 176 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 252 (471)
.+.|++..+ .+..+|..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...++.. ..
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH--FE 172 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH--HH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH--Hh
Confidence 655554332 23446666777777777777777777777664 344444444444455667777777777666 33
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-------HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 253 SKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPN-------VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
.. +++...+. ++..+...++.++|...+.+..+.+ ...|..+...+...|++++|...|++..+. .|+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 32 22333333 6666677777777777777766522 366777888888888888888888888765 3432
Q ss_pred HHHHHHHHHhccCCcHHHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
. .....++...|++++|.+.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 1 12233455667777777665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-12 Score=109.84 Aligned_cols=203 Identities=11% Similarity=-0.008 Sum_probs=131.2
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHH
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVG 299 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 299 (471)
..+..+...+...|++++|.+.++.+ .+.. +.+...+..+...|...|++++|...|++..+ .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDA--LKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH--HHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34444445555555555555555555 3222 22344555555555555666666655555432 344566666777
Q ss_pred HHhC-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 012101 300 YAAN-GLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 300 ~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCH
Confidence 7777 777777777777776323333 4566667777778888888888888776542 23466777788888888888
Q ss_pred HHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 012101 378 EEARAMVEGM-PMK--ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAY 430 (471)
Q Consensus 378 ~~A~~~~~~m-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 430 (471)
++|.+.++++ ... .+...+..+...+...|+.+.+..+++.+.+..|.++...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888888877 322 3556677777777888888888888888888887665443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-12 Score=118.21 Aligned_cols=243 Identities=10% Similarity=0.051 Sum_probs=194.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCC-HHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGD-LELALQVHKYVFQVKSKQKSDTLMLNSLID 267 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (471)
.|+.+...+.+.|++++|+..+++..+.. +-+...|..+..++...|+ +++|...++++ +... +.+...|..+..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a--l~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAI--IEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH--HHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHH--HHHC-CCCHHHHHHHHH
Confidence 68888888999999999999999998763 4456788888888888996 99999999998 5544 336778899999
Q ss_pred HHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc-CCcHHH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH-GGKVQE 343 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 343 (471)
++...|++++|...|+++.+ .+...|..+..++...|++++|+..++++.+.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998765 567888899999999999999999999999874 3356778888888887 565566
Q ss_pred H-----HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 012101 344 G-----KHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAG--LLEEARAMVEGMPMKA-NVVIWGCLMGACEKFG------- 407 (471)
Q Consensus 344 a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~l~~~~~~~~------- 407 (471)
| ...+++..+. .| +...|..+...+...| ++++|.+.+.++...| +...+..+..+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 4778877654 34 4567888888888887 6888988888874445 5668888888888874
Q ss_pred --CHHHHHHHHHHH-HhcCCCCCchHHHHHHHHHc
Q 012101 408 --NVKMGEWVAKHL-QELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 408 --~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 439 (471)
.+++|.++++++ .+.+|.....|..+...+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 88888777778777766543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.6e-13 Score=123.98 Aligned_cols=282 Identities=12% Similarity=-0.008 Sum_probs=188.6
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCC----cchHHHHHHHHHhcCChhhHHHHhccCCC-----C----CcchHHHHH
Q 012101 128 LKASCQLFALEIGRQLHSLAVRLGLESN----EFCESGFISLYSKAGDFEKARKVFDENPE-----R----KLGSWNAII 194 (471)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li 194 (471)
...+...|++++|...++++.+.+ +.+ ..++..+...|...|++++|...|++... . ...++..+.
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 334444444444444444444432 111 12344455555555555555555544211 0 133678888
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHcCcCC--------------------HHHHHHHHHHHH
Q 012101 195 AGLSQDGRAKEAIDMFIGLKKCGF-EPD----DVTMVSVTSACGSLGD--------------------LELALQVHKYVF 249 (471)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~ 249 (471)
..+...|++++|+..+++..+... .++ ..++..+...+...|+ ++.|...++...
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999988765310 112 3477788888999999 999999999874
Q ss_pred HhhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----HhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 012101 250 QVKSKQK---SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PN----VSSWTSMIVGYAANGLANEALDCFHYMR 317 (471)
Q Consensus 250 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 317 (471)
....... ....++..+...|...|++++|...|++..+ ++ ..++..+...+...|++++|...+++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3322221 1234678889999999999999999988764 22 2378888999999999999999999887
Q ss_pred Hc----CCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 012101 318 ES----GIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM- 387 (471)
Q Consensus 318 ~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m- 387 (471)
+. +..+. ..++..+...|...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 53 11111 457778888999999999999999988654222222 456778889999999999999998886
Q ss_pred ------CCCC-CHHHHHHHHHHHHhcCCHH
Q 012101 388 ------PMKA-NVVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 388 ------~~~p-~~~~~~~l~~~~~~~~~~~ 410 (471)
+..+ ...++..+...+...|+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 335 EISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1111 1234455555555555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=5.6e-13 Score=123.63 Aligned_cols=231 Identities=10% Similarity=0.014 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhcCC---CCHhhHHHHH
Q 012101 222 DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGR-MDLAYKVFWEIDQ---PNVSSWTSMI 297 (471)
Q Consensus 222 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li 297 (471)
...|..+...+.+.|++++|...++.+ +... +.+..+|+.+..++...|+ +++|...|++..+ .+...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~a--l~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDA--IELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHH--HHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 345667777788899999999999999 5544 3467889999999999997 9999999998875 5678999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCC
Q 012101 298 VGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR-AGL 376 (471)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~ 376 (471)
.++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++.+.. +-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999874 3367788888899999999999999999998762 2356788899999998 666
Q ss_pred HHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC------
Q 012101 377 LEEA-----RAMVEGM-PMKA-NVVIWGCLMGACEKFG--NVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG------ 441 (471)
Q Consensus 377 ~~~A-----~~~~~~m-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 441 (471)
.++| .+.+++. .+.| +...|+.+...+...| ++++|.+.++++ +..|.++..+..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5777 4777776 5566 5678999999999888 689999999998 777888788899999998864
Q ss_pred ---ChHHHHHHHHHh-hcCCCc
Q 012101 442 ---LWEEVERIRAVM-KHRNLA 459 (471)
Q Consensus 442 ---~~~~A~~~~~~m-~~~~~~ 459 (471)
.+++|.++++++ .+.++.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG
T ss_pred hHHHHHHHHHHHHHHHHHhCch
Confidence 358999999999 666554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.6e-12 Score=104.27 Aligned_cols=167 Identities=10% Similarity=0.026 Sum_probs=132.3
Q ss_pred CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012101 289 NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV 368 (471)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 368 (471)
++..|..+...|...|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 45667777888888888888888888877753 2346677777788888888888888888886542 33455666777
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHH
Q 012101 369 DLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEV 446 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 446 (471)
..+...++++.|.+.+.+. ...| +...+..+..++.+.|++++|++.+++..+..|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7888888888888888887 3344 5678888888999999999999999999999998888899999999999999999
Q ss_pred HHHHHHhhcCCC
Q 012101 447 ERIRAVMKHRNL 458 (471)
Q Consensus 447 ~~~~~~m~~~~~ 458 (471)
.+.|++..+.++
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 999998877654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=125.00 Aligned_cols=192 Identities=8% Similarity=-0.071 Sum_probs=147.5
Q ss_pred ChhHHHHHHHHHHhcCCh-HHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRM-DLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
+...+..+..+|...|++ ++|...|++..+ .+...|..+...|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 455555556666666666 666666655443 33566777777777788888888888887765 466677777778
Q ss_pred HhccC---------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC----
Q 012101 334 ACVHG---------GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA--------GLLEEARAMVEGM-PMKA---- 391 (471)
Q Consensus 334 ~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p---- 391 (471)
.+... |++++|.+.+++..+.. +.+...|..+..+|... |++++|.+.|++. .+.|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 88888998888887652 23466788888888888 8899999998888 5455
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
+...|..+..+|...|++++|.+.|+++.+..|.++..+..+..++...|++++|.+.++++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67788999999999999999999999999999988888889999999999999988755443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.9e-13 Score=124.64 Aligned_cols=268 Identities=13% Similarity=0.026 Sum_probs=162.7
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCc----chHHHHHHHHHhcCChhhHHHHhccCCCC---------Ccch
Q 012101 123 TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNE----FCESGFISLYSKAGDFEKARKVFDENPER---------KLGS 189 (471)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~~ 189 (471)
.+..+...+...|++++|...++++.+.+ +.+. ..+..+...|...|++++|.+.|++..+. ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445556777888888888888887764 2222 35666667777777777777776553211 1124
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcC-CCCChhHHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSK-QKSDTLMLNSLIDM 268 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 268 (471)
+..+...|...|++++|+..+++..+... ..+ ......++..+...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------------------------~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR---------------------------------QLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------------------HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------------------------HhhchHHHHHHHHHHHHH
Confidence 55555555556666666665555543200 000 00112234444455
Q ss_pred HHhcCC-----------------hHHHHHHHHhcCC---------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-
Q 012101 269 YGKCGR-----------------MDLAYKVFWEIDQ---------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGI- 321 (471)
Q Consensus 269 ~~~~g~-----------------~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~- 321 (471)
|...|+ +++|...+++..+ ....++..+...+...|++++|...+++..+...
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 555555 5555554444321 1123566666777777777777777777654310
Q ss_pred CCC----HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC------
Q 012101 322 RPN----HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM------ 387 (471)
Q Consensus 322 ~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m------ 387 (471)
.++ ...+..+...|...|++++|...+++......-..+ ...+..+...|...|++++|.+.+++.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 011 225667777788888888888888777553211111 456777888888889999988888876
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 388 -PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 388 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
+..+ ...++..+..+|...|++++|...+++..++..
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1111 234777888889999999999999998887654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.5e-12 Score=117.14 Aligned_cols=229 Identities=7% Similarity=-0.022 Sum_probs=128.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC----ChhHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKC----GFEP-DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS----DTLMLN 263 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 263 (471)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+.+..+....... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556677777777777776543 1111 2245666666677777777777777766332222211 123566
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-----CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CC-CCCHHHHH
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQ-----PN----VSSWTSMIVGYAANGLANEALDCFHYMRES----GI-RPNHVTFV 329 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~ 329 (471)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 666677777777777776665542 11 135566666677777777777777666541 22 22244566
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNVYQIEPR---FAHYGCMVDLLGRAGL---LEEARAMVEGMPMKANV-VIWGCLMGA 402 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~l~~~ 402 (471)
.+...+.+.|++++|...+++..+...-..+ ...+..+...|...|+ .++|..++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6666667777777777776665432111111 1223445555556666 56666666666433332 345555566
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 012101 403 CEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~ 421 (471)
|...|++++|...+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8.6e-11 Score=116.31 Aligned_cols=411 Identities=9% Similarity=-0.055 Sum_probs=274.0
Q ss_pred CCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCC---chHHHHHHHHHHHCC-CC
Q 012101 45 DTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEA---PKKALDIYIFMSRAG-VL 118 (471)
Q Consensus 45 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~ 118 (471)
.-.|.....|..++..+.+ .+.+..++.+|+++-. +.+...|..-+..-.+.|+ ++.+..+|++..... .+
T Consensus 60 ~~np~d~~~W~~yi~~~~~---~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~ 136 (679)
T 4e6h_A 60 EEQPTDIFLYVKLLKHHVS---LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGN 136 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCC
T ss_pred HHCcCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCC
Confidence 3344444499999999988 6778999999987642 4566788899999899999 999999999998764 14
Q ss_pred CCcchHHHHHHHHhccCCc--------hHHHHHHHHHHH-hCC-CCC-cchHHHHHHHHHh---------cCChhhHHHH
Q 012101 119 PDCYTLPIVLKASCQLFAL--------EIGRQLHSLAVR-LGL-ESN-EFCESGFISLYSK---------AGDFEKARKV 178 (471)
Q Consensus 119 p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~ll~~~~~---------~g~~~~a~~~ 178 (471)
|+...|..-+....+.++. +.+.++|+..+. .|. .++ ...|...+..... .++++.+.++
T Consensus 137 ~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~i 216 (679)
T 4e6h_A 137 NDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKL 216 (679)
T ss_dssp CCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHH
Confidence 7888888777766555543 345577887665 465 554 3577777765432 3457788999
Q ss_pred hccCCCC---Ccc-hH---HHHHHHHH----------cCCChhHHHHHHHHHHH--CCC----C-----------C----
Q 012101 179 FDENPER---KLG-SW---NAIIAGLS----------QDGRAKEAIDMFIGLKK--CGF----E-----------P---- 220 (471)
Q Consensus 179 ~~~~~~~---~~~-~~---~~li~~~~----------~~~~~~~a~~~~~~m~~--~g~----~-----------p---- 220 (471)
|++...- +.. .| ..+..... ...+++.|...+.++.. .++ + |
T Consensus 217 y~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~ 296 (679)
T 4e6h_A 217 YKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 296 (679)
T ss_dssp HHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence 9876532 111 22 22222210 01123344455544322 111 1 1
Q ss_pred -C---HHHHHHHHHHHcCcC-------CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH-HHHHhcCC-
Q 012101 221 -D---DVTMVSVTSACGSLG-------DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAY-KVFWEIDQ- 287 (471)
Q Consensus 221 -~---~~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~- 287 (471)
+ ...|...+..--..+ ..+.+..+|+++ +.. ++.+..+|-..+..+.+.|+.++|. .+|++...
T Consensus 297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~a--L~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~ 373 (679)
T 4e6h_A 297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQA--AQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373 (679)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH--HHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHH--HHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1 123333333322221 123456678877 443 3446778888888888899999996 99987764
Q ss_pred --CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHhccCCcHHHH
Q 012101 288 --PNVSSWTSMIVGYAANGLANEALDCFHYMRESGI---------RPN------------HVTFVGVLSACVHGGKVQEG 344 (471)
Q Consensus 288 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~ll~~~~~~~~~~~a 344 (471)
.+...|-..+...-+.|++++|.++|+++.+... .|+ ...|...+....+.|+.+.|
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A 453 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS 453 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence 3555677788888899999999999999886410 132 23567777777778899999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 345 KHFFEMMKNVYQIEPRFAHYGCMVDLLGRA-GLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 345 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
..+|..+.+..+ .+....|...+..-.+. ++.+.|.++|+.. ...| +...|...+......|+.+.|..+|+++..
T Consensus 454 R~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 454 RKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999976411 12233444333333344 4589999999988 2233 556777888888889999999999999998
Q ss_pred cCCC---CCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCC
Q 012101 422 LEPW---SDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIP 462 (471)
Q Consensus 422 ~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 462 (471)
..++ ....|...+..-.+.|+.+.+.++.+++.+..+...+
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 7763 2346778888888999999999999999887765433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-12 Score=118.55 Aligned_cols=228 Identities=7% Similarity=-0.023 Sum_probs=170.6
Q ss_pred HHHHHcCcCCHHHHHHHHHHHHHhhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC-----HhhHH
Q 012101 228 VTSACGSLGDLELALQVHKYVFQVKSKQKS---DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PN-----VSSWT 294 (471)
Q Consensus 228 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 294 (471)
....+...|++++|...++...+.....+. ...++..+...|...|++++|...+.+..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555677899999999999998332222222 346788899999999999999998887653 22 35778
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhccCCcHHHHHHHHHHhHHhc---CC-CCChhHHH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGI-RPN----HVTFVGVLSACVHGGKVQEGKHFFEMMKNVY---QI-EPRFAHYG 365 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~ 365 (471)
.+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999998775311 111 2467788889999999999999999887621 22 22345688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CC-----CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PM-----KA-NVVIWGCLMGACEKFGN---VKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
.+...|.+.|++++|.+.+++. .+ .| ....+..+...+...|+ +++|..++++.. ..+.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 8999999999999999999987 11 22 22345677788889999 777777776651 11222346778999
Q ss_pred HHHcCCChHHHHHHHHHhhcC
Q 012101 436 IYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.|...|++++|.+.+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.9e-12 Score=113.53 Aligned_cols=133 Identities=10% Similarity=-0.019 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hh
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRES----GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FA 362 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 362 (471)
++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4455555666666666666666655432 1000 1225566666677777777777777766543211111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
++..+...|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++..+..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5666777788888888888887776 1111 134677788888899999999999988887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-10 Score=104.42 Aligned_cols=218 Identities=11% Similarity=0.045 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHc-------CcCCH-------HHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 012101 204 KEAIDMFIGLKKCGFEPDDVTMVSVTSACG-------SLGDL-------ELALQVHKYVFQVKSKQKSDTLMLNSLIDMY 269 (471)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (471)
++|..+|++..... +-+...|..+...+. +.|++ ++|..+|++. +..-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rA--l~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA--ISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH--HTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHH--HHHhCcccHHHHHHHHHHH
Confidence 67778888877652 445666766666654 34665 8888888888 5532234566888888888
Q ss_pred HhcCChHHHHHHHHhcCC--CC-Hh-hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-hccCCcHHHH
Q 012101 270 GKCGRMDLAYKVFWEIDQ--PN-VS-SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA-CVHGGKVQEG 344 (471)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a 344 (471)
.+.|++++|..+|++..+ |+ .. .|..+...+.+.|++++|..+|++..+.. +++...|...... +...|+.++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999988765 33 33 78888888888999999999999988763 2334444433332 2236899999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012101 345 KHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-P---MKA--NVVIWGCLMGACEKFGNVKMGEWVAKH 418 (471)
Q Consensus 345 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 418 (471)
..+|+...+.. +-+...|..++..+.+.|++++|..+|++. . ..| ....|..++....+.|+.+.|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999987764 235678888889999999999999999988 2 355 356888888888999999999999999
Q ss_pred HHhcCCCCC
Q 012101 419 LQELEPWSD 427 (471)
Q Consensus 419 ~~~~~~~~~ 427 (471)
+.+..|.+.
T Consensus 267 a~~~~p~~~ 275 (308)
T 2ond_A 267 RFTAFREEY 275 (308)
T ss_dssp HHHHTTTTT
T ss_pred HHHHccccc
Confidence 999888654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=102.77 Aligned_cols=160 Identities=13% Similarity=-0.007 Sum_probs=86.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 012101 297 IVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL 376 (471)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcC
Confidence 333334444444444444333221 1223334444444444445555555544443321 1233444455555555555
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 377 LEEARAMVEGM-PM-KANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 377 ~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
+++|.+.++++ .. +.+...+..+..++...|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++.
T Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555 21 22455666666677777777777777777777776666667777777777777777777777766
Q ss_pred cCCCc
Q 012101 455 HRNLA 459 (471)
Q Consensus 455 ~~~~~ 459 (471)
+....
T Consensus 172 ~~~~~ 176 (186)
T 3as5_A 172 ELDEG 176 (186)
T ss_dssp HHHHC
T ss_pred HcCCC
Confidence 55433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-10 Score=103.99 Aligned_cols=261 Identities=10% Similarity=0.018 Sum_probs=109.5
Q ss_pred HHHHhcCChhhHHHHhccC----CCCCcc----hHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHH
Q 012101 164 SLYSKAGDFEKARKVFDEN----PERKLG----SWNAIIAGLSQDGRAKEAIDMFIGLKKCGF-EPDD----VTMVSVTS 230 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~----~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~li~ 230 (471)
..+...|++++|...+++. +..+.. +++.+...+...|++++|...+++...... .++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444556666665555432 111111 334444555555666666655555443210 0111 12333444
Q ss_pred HHcCcCCHHHHHHHHHHHHHhhc--CCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C------CHhhHHHHH
Q 012101 231 ACGSLGDLELALQVHKYVFQVKS--KQK--S-DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P------NVSSWTSMI 297 (471)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~--~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li 297 (471)
.+...|++++|...+++...... +.. | ....+..+...|...|++++|...+++..+ + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 45555555555555555522111 110 1 122334444555555555555555544321 0 112344444
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHH----HHHHHhccCCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHH
Q 012101 298 VGYAANGLANEALDCFHYMRESGIRPN--HVTFV----GVLSACVHGGKVQEGKHFFEMMKNVYQIEP--RFAHYGCMVD 369 (471)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~ 369 (471)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...++.......-.+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 455555555555555555443211111 11111 111224445555555555555432110000 0112334444
Q ss_pred HHHhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 370 LLGRAGLLEEARAMVEGM-------PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
.+...|++++|...+++. +..++. ..+..+..++...|+.++|...+++..+..+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 555555555555555444 111111 1333344445555555555555555554433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-13 Score=119.60 Aligned_cols=165 Identities=13% Similarity=0.141 Sum_probs=102.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc----C-CC
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKC-------GFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKS----K-QK 256 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~-~~ 256 (471)
++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...++....... + .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 6788888888899999999999888763 2233445677777778888888888888887732211 1 12
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc------
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----------PNVSSWTSMIVGYAANGLANEALDCFHYMRES------ 319 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------ 319 (471)
....++..+...|...|++++|...|++..+ .....+..+...+...|++++|.++++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2345666677777777777777777665432 11234555555666666666666666665543
Q ss_pred CCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 320 GIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 320 ~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
+..|+ ..++..+...+...|++++|.+.++++.+
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 23444555555566666666666665543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-11 Score=99.35 Aligned_cols=166 Identities=16% Similarity=0.053 Sum_probs=133.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA 334 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 334 (471)
+..+|..+...|.+.|++++|...|++..+ .+..+|..+..+|.+.|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456778888888888888888888887654 456778888888888999999999888887763 3345566667777
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMG 412 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a 412 (471)
+...++++.|...+.+..... +.+...+..+...|.+.|++++|.+.|++. .+.| +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 888899999999998887652 345667888888999999999999999988 5455 567889999999999999999
Q ss_pred HHHHHHHHhcCCCC
Q 012101 413 EWVAKHLQELEPWS 426 (471)
Q Consensus 413 ~~~~~~~~~~~~~~ 426 (471)
.+.|+++.+.+|.+
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999888754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-10 Score=107.61 Aligned_cols=228 Identities=11% Similarity=0.018 Sum_probs=122.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC----ChhHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGF-EPD----DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS----DTLMLN 263 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 263 (471)
....+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+++..+....... ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455667777777777777654311 122 235556666677777777777777766322222111 133555
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-----CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQ-----PN----VSSWTSMIVGYAANGLANEALDCFHYMRE-----SGIRPNHVTFV 329 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 329 (471)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 666666677777776666655432 11 23455566666666666666666666554 21 11244555
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNVYQIEPR---FAHYGCMVDLLGRAGL---LEEARAMVEGMPMKANV-VIWGCLMGA 402 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~l~~~ 402 (471)
.+...+.+.|++++|...+++..+...-..+ ...+..+...|...|+ ..+|...++..+..|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 5566666666666666666665543211111 2233344444445555 55555555555333322 244445555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 012101 403 CEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~ 421 (471)
|...|++++|...+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5566666666665555543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-09 Score=104.19 Aligned_cols=398 Identities=10% Similarity=0.020 Sum_probs=264.2
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCc---hHHHHHHhcccCC-C---CchhhHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQ---IYAHIIRTHMLHS-Y---SAAFHWN 90 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~~~a~~~~~~~~~-~---~~~~~~~ 90 (471)
...+++.+.+......++.+.+. ++..-|.....|..-+..-.+ .++ ...+..+|++.-. - |++..|.
T Consensus 69 W~~yi~~~~~~~~~~~aR~vyEr--aL~~fP~~~~lW~~Yi~~E~~---~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 69 YVKLLKHHVSLKQWKQVYETFDK--LHDRFPLMANIWCMRLSLEFD---KMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH--HHHHCTTCHHHHHHHHHHHHT---C--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 33455555555566666666663 334345544489988888777 566 9999999997542 2 7888898
Q ss_pred HHHHHHHhCCCc--------hHHHHHHHHHHH-CCC-CCC-cchHHHHHHHHhc---------cCCchHHHHHHHHHHHh
Q 012101 91 NIIRLYTRLEAP--------KKALDIYIFMSR-AGV-LPD-CYTLPIVLKASCQ---------LFALEIGRQLHSLAVRL 150 (471)
Q Consensus 91 ~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~ 150 (471)
.-+....+.++. +...++|+.... -|. .|+ ...|...+..... .++++.+..+|+..+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 888776665554 334578887654 365 554 3566666655432 33567888999988752
Q ss_pred CCCCCcchHHHHHHHHHh-------------cCChhhHHHHhcc-------CCC--------------C--C------cc
Q 012101 151 GLESNEFCESGFISLYSK-------------AGDFEKARKVFDE-------NPE--------------R--K------LG 188 (471)
Q Consensus 151 ~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~-------~~~--------------~--~------~~ 188 (471)
....-..+|......-.. ..+++.|...+.+ +.. | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 211112233222111111 1123334444422 111 0 1 11
Q ss_pred hHHHHHHHHHcCC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHH-HHHHHHHHhhcCCCCChh
Q 012101 189 SWNAIIAGLSQDG-------RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELAL-QVHKYVFQVKSKQKSDTL 260 (471)
Q Consensus 189 ~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~ 260 (471)
.|...+..--..+ ..+.+..+|++.... ++-+...|...+..+...|+.+.|. .+++.. .. .++.+..
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA--i~-~~P~s~~ 379 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLG--QQ-CIPNSAV 379 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH--HH-HCTTCHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH--HH-hCCCCHH
Confidence 3555554333322 123456778887765 3556777887777777888888896 999988 54 3455677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC-------------CC------------HhhHHHHHHHHHhCCChhHHHHHHHH
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ-------------PN------------VSSWTSMIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (471)
.+-..+...-+.|++++|..+|+++.+ |+ ...|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788888999999999999999998764 21 23677888888888999999999999
Q ss_pred HHHc-C-CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 012101 316 MRES-G-IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA- 391 (471)
Q Consensus 316 m~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 391 (471)
..+. + ..+......+.+.-. ..++.+.|.++|+...+.++ -+...|...++.....|+.+.|..+|++. ...|
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9876 2 222233333333322 23569999999999988753 45566778888888999999999999998 4334
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 392 ---NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 392 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
....|...+..-.+.|+.+.+..+.+++.+..|.++
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 346889999989999999999999999999998765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-12 Score=113.97 Aligned_cols=248 Identities=11% Similarity=0.052 Sum_probs=157.8
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHhccCCC--------CC---cchHHHHHHHHHcCCChhHHHHHHHHHHHC------C
Q 012101 155 NEFCESGFISLYSKAGDFEKARKVFDENPE--------RK---LGSWNAIIAGLSQDGRAKEAIDMFIGLKKC------G 217 (471)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g 217 (471)
+..++..+...|...|++++|..+|++..+ .+ ..++..+...+...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345678888999999999999999987653 12 236888899999999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC----
Q 012101 218 F-EPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKS----K-QKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---- 287 (471)
Q Consensus 218 ~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 287 (471)
- +.....+..+...+...|++++|...++.+..... + .+.....+..+...|...|++++|...|++..+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 22356778888899999999999999998843221 1 223456788889999999999999999887643
Q ss_pred -------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC
Q 012101 288 -------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR 360 (471)
Q Consensus 288 -------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 360 (471)
....++..+...+...|++++|...++++.+.. |+. .+..+- ........ .
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~~----------------~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIWM----------------H 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHHH----------------H
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHHH----------------H
Confidence 123467788889999999999999999887641 100 000000 00000000 0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
...+..+...+...+.+.++...++.. ...| +..++..+..+|.+.|++++|...+++..++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 011111222233334444444445544 2233 344677777777777888888877777766544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.1e-10 Score=99.87 Aligned_cols=214 Identities=7% Similarity=-0.046 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHHhcCC---C-CHhhHHHHHHHH
Q 012101 239 ELALQVHKYVFQVKSKQKSDTLMLNSLIDMYG-------KCGRM-------DLAYKVFWEIDQ---P-NVSSWTSMIVGY 300 (471)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~ 300 (471)
++|..+|+++ +... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+
T Consensus 33 ~~a~~~~~~a--l~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQC--LLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHH--HHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 6788899888 5433 446777888877775 35886 899999998654 3 456899999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCH-H-HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNH-V-TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLG-RAGLL 377 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~ 377 (471)
...|++++|..+|++..+. .|+. . .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999974 5543 3 78888888999999999999999997542 233444544333322 36999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CC-CCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 378 EEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELE---PW-SDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 378 ~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
++|.++|++. ...| +...|..++..+.+.|++++|..+|+++.+.. |. +...|..++..+.+.|+.++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998 3334 67789999999999999999999999999963 32 34578888999999999999999999
Q ss_pred HhhcCCCc
Q 012101 452 VMKHRNLA 459 (471)
Q Consensus 452 ~m~~~~~~ 459 (471)
++.+..+.
T Consensus 266 ~a~~~~p~ 273 (308)
T 2ond_A 266 RRFTAFRE 273 (308)
T ss_dssp HHHHHTTT
T ss_pred HHHHHccc
Confidence 99876654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-11 Score=111.70 Aligned_cols=228 Identities=9% Similarity=-0.029 Sum_probs=167.1
Q ss_pred HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC-----HhhH
Q 012101 227 SVTSACGSLGDLELALQVHKYVFQVKSKQKS---DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PN-----VSSW 293 (471)
Q Consensus 227 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~ 293 (471)
.....+...|++++|...+++.......... ...++..+...|...|+++.|...+++..+ ++ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3444567889999999999998332222221 245788899999999999999988877643 22 3567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhc---CCCCChhHHH
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRES----GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVY---QIEPRFAHYG 365 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~ 365 (471)
+.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|.+.+++..+.. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88899999999999999999987653 1111 23467778888999999999999999887621 1122356778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM----PM--KAN-VVIWGCLMGACEKFGN---VKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
.+...|.+.|++++|...+++. .. .|. ...+..+...+...++ +.+|...+++... .+.....+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hhHHHHHHHHHHH
Confidence 8889999999999999999987 11 232 3456666677778888 7777777766211 1222346778999
Q ss_pred HHHcCCChHHHHHHHHHhhc
Q 012101 436 IYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~ 455 (471)
.|.+.|++++|.+.+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.3e-11 Score=113.05 Aligned_cols=207 Identities=10% Similarity=-0.077 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCH-HHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012101 203 AKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDL-ELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKV 281 (471)
Q Consensus 203 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (471)
.++++..++...... +.+...+..+..++...|++ ++|.+.|++. ++.. +.+...+..+..+|.+.|++++|...
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~a--l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKA--VKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHH--HhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445555555544331 33555666666666677777 7777777666 3332 22455666677777777777777777
Q ss_pred HHhcCC--CCHhhHHHHHHHHHhC---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC--------CcHH
Q 012101 282 FWEIDQ--PNVSSWTSMIVGYAAN---------GLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG--------GKVQ 342 (471)
Q Consensus 282 ~~~~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------~~~~ 342 (471)
|++..+ |+...+..+...+... |++++|...+++..+.. +-+...+..+..+|... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 766554 5556666666666666 77777777777776653 22455666666666666 7777
Q ss_pred HHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 012101 343 EGKHFFEMMKNVYQIEP----RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 343 ~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
+|.+.|++..+. .| +...|..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777654 34 5566777777777777777777777776 4444 4456677777777777777776544
Q ss_pred H
Q 012101 417 K 417 (471)
Q Consensus 417 ~ 417 (471)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-10 Score=94.19 Aligned_cols=167 Identities=12% Similarity=0.021 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 259 TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567778888999999999999998876 456788888999999999999999999988763 44677788888899
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 413 (471)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999997652 346678888999999999999999999998 3333 6778999999999999999999
Q ss_pred HHHHHHHhcCCCCCc
Q 012101 414 WVAKHLQELEPWSDG 428 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~ 428 (471)
..++++.+..|.++.
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999988776553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.4e-11 Score=118.16 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=129.3
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCM 367 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 367 (471)
..+|+.+...|.+.|++++|++.|++..+. .| +...+..+..+|.+.|++++|++.|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 356777777778888888888888877765 34 3567777778888888888888888887754 343 5677888
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 012101 368 VDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEE 445 (471)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (471)
..+|.+.|++++|.+.|++. .+.| +...|+.+..++...|++++|++.|+++.++.|.++..+..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888887 5556 466888899999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHhhc
Q 012101 446 VERIRAVMKH 455 (471)
Q Consensus 446 A~~~~~~m~~ 455 (471)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-10 Score=96.78 Aligned_cols=204 Identities=8% Similarity=0.022 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHH
Q 012101 220 PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSM 296 (471)
Q Consensus 220 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 296 (471)
.|+..+......+...|++++|...|+.. ++...+++...+..+..+|...|++++|...|++..+ .+...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a--l~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEY--LKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHH--HhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 45667777777888888888888888888 5555435666666678888888888888888877654 344567777
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC---hhHHHH
Q 012101 297 IVGYAANGLANEALDCFHYMRESGIRPNH-------VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR---FAHYGC 366 (471)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 366 (471)
...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|+++.+ +.|+ ...+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 788888888888888888877652 2223 3455666667777888888888887763 3454 345666
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PM-KANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
+..+|...|+. .++.+ .+ ..+...+.... ....+.+++|...+++..++.|.++.+...+..+
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 66666554432 22222 11 11233333332 2344567888888888888888776655555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-09 Score=99.02 Aligned_cols=227 Identities=10% Similarity=-0.048 Sum_probs=120.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHhccCCchHHHHHHHHHHHhCCC-CCc----chHHH
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY----TLPIVLKASCQLFALEIGRQLHSLAVRLGLE-SNE----FCESG 161 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 161 (471)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+++..+.... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445667888888888888877653221211 3444555667778888888888777653211 111 22344
Q ss_pred HHHHHHhcCChhhHHHHhccCCC-------C---C-cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCC--C--CHHHHH
Q 012101 162 FISLYSKAGDFEKARKVFDENPE-------R---K-LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFE--P--DDVTMV 226 (471)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~~~~-------~---~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~ 226 (471)
+...+...|++++|.+.+++... + . ...+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 55666667777777666654321 1 0 113455566666677777777777665543211 1 123455
Q ss_pred HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhcCCCC-------HhhHHH
Q 012101 227 SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLN----SLIDMYGKCGRMDLAYKVFWEIDQPN-------VSSWTS 295 (471)
Q Consensus 227 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~ 295 (471)
.+...+...|++++|...+++................ ..+..+...|++++|...+++..+++ ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 5556666667777777776666221111111111111 12233556666666666666655421 112334
Q ss_pred HHHHHHhCCChhHHHHHHHHHH
Q 012101 296 MIVGYAANGLANEALDCFHYMR 317 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~ 317 (471)
+...+...|++++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=100.15 Aligned_cols=193 Identities=12% Similarity=-0.015 Sum_probs=141.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVL 332 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 332 (471)
.++..+......+...|++++|...|++..+ ++...+..+..++...|++++|...+++..+.. +-+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 3556777888888899999999998887653 566677778888888999999999999888753 22456777788
Q ss_pred HHhccCCcHHHHHHHHHHhHHhcCCCCC-h-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 012101 333 SACVHGGKVQEGKHFFEMMKNVYQIEPR-F-------AHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN---VVIWGCLM 400 (471)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~ 400 (471)
.++...|++++|.+.+++..+.. |+ . ..|..+...+...|++++|.+.|++. ...|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 88888899999999998887652 33 3 44677777888889999999988887 66776 34666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 401 GACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
.+|... +...++++....+.++..|.... ....+.+++|...+++..+..+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCC
Confidence 776544 44556666666655544443332 334566899999999998876543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=4e-09 Score=92.93 Aligned_cols=240 Identities=11% Similarity=0.020 Sum_probs=167.1
Q ss_pred HHHHhcCChhhHHHHhccCCCCCcc-hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHH
Q 012101 164 SLYSKAGDFEKARKVFDENPERKLG-SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELAL 242 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 242 (471)
+-..-.|++..+..-...+...+.. .-.-+.+++...|++.... .-.|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HH
Confidence 4445579998888866665433332 3334557888888876421 2234444544444443 322 66
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCHhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 012101 243 QVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PNVSSWTSMIVGYAANGLANEALDCFHYMR 317 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 317 (471)
..+++. ...+ .++......+..++...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 87 ~~l~~l--~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 87 EELENL--LKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHT--TTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH--HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777766 5544 34455556888999999999999999998743 245677788899999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHHhcc----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 012101 318 ESGIRP-----NHVTFVGVLSACVH----GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM- 387 (471)
Q Consensus 318 ~~~~~p-----~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 387 (471)
+. .| +..+...+..++.. .++.+.|..+|+++.+. .|+...-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 66 36666677766332 34899999999999754 355333334445888999999999999865
Q ss_pred CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 388 PM----------KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 388 ~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
.. .| |..++..++......|+ +|.++++++.+..|.++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 32 24 55677567666666787 88999999999999876
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=102.64 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=17.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
.+..++.+|.+.|++++|.+.+++..+
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666667777777777777666544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-09 Score=95.82 Aligned_cols=215 Identities=13% Similarity=0.023 Sum_probs=101.3
Q ss_pred ChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHcCcCCHHHHHHHH
Q 012101 171 DFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKC----GFEPD-DVTMVSVTSACGSLGDLELALQVH 245 (471)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~~ 245 (471)
++++|...|++ ....|...|++++|...|++..+. |-+++ ..+|..+..+|.+.|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36666666543 355666667777777666655432 21111 235555555555566666666655
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhC-CChhHHHHHHHHHHHcCC---
Q 012101 246 KYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAAN-GLANEALDCFHYMRESGI--- 321 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~--- 321 (471)
+...+... ..|+...+ ..+++.+...|... |++++|+..|++..+...
T Consensus 101 ~~Al~l~~-----------------~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 101 ENAIQIFT-----------------HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHHH-----------------HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-----------------HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 55521111 11111111 12344455555553 666666665555543210
Q ss_pred CC-C-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 012101 322 RP-N-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF-----AHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV 393 (471)
Q Consensus 322 ~p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 393 (471)
.+ . ..++..+...+...|++++|...|++..+...-.+.. ..|..+..++...|++++|...+++. .+.|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 00 0 2345555556666666666666666655431111111 13444555566666666666666665 434432
Q ss_pred H------HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCC
Q 012101 394 V------IWGCLMGACE--KFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 394 ~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~ 424 (471)
. .+..++.++. ..+++++|...|+++.+++|
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 1 2333344443 23445555555555444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-09 Score=94.79 Aligned_cols=199 Identities=11% Similarity=0.062 Sum_probs=103.0
Q ss_pred HHHHHHHHHcCcCCHHHHHHHHHHHHHhh-----cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----------
Q 012101 224 TMVSVTSACGSLGDLELALQVHKYVFQVK-----SKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----------- 287 (471)
Q Consensus 224 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------- 287 (471)
++..+...+...|++++|...++.+.... ...+....++..+...|...|++++|...|.+..+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 34444444444555555555544442111 00111233445555555555555555555544332
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhc-----
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRES------GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVY----- 355 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 355 (471)
....++..+...+...|++++|...+++..+. +-.| ...++..+...|...|++++|...++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 11234555666666677777777777666543 1122 24456667777777888888888877775431
Q ss_pred -CCCCC-hhHHHHHHHHHHh------cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 012101 356 -QIEPR-FAHYGCMVDLLGR------AGLLEEARAMVEGMP-MKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 356 -~~~p~-~~~~~~li~~~~~------~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
...+. ...|..+...+.. ...+..+...++..+ ..| ...++..+..+|...|++++|...+++..+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 2223333333322 223445555555553 334 3457888889999999999999999988764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-08 Score=90.32 Aligned_cols=216 Identities=13% Similarity=0.163 Sum_probs=129.9
Q ss_pred HHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHH
Q 012101 162 FISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELA 241 (471)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 241 (471)
+.++|...|+++... -..+.......+.. |...+ |+..|++....+ .++..++..+..++...|++++|
T Consensus 51 ~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeA 119 (310)
T 3mv2_B 51 KAKTLLALGQYQSQD-----PTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKS 119 (310)
T ss_dssp HHHHHHHTTCCCCCC-----SSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCCccCC-----CCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 346777777766421 11122223333332 23322 677777776654 45566666777777778888888
Q ss_pred HHHHHHHHHhhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-----CHhhHHHHHHHHH--h--CCChhHH
Q 012101 242 LQVHKYVFQVKSKQ-KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P-----NVSSWTSMIVGYA--A--NGLANEA 309 (471)
Q Consensus 242 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~--~--~~~~~~a 309 (471)
.+++.+. +..+. .-+...+..++..|.+.|+.+.|.+.+++|.+ | +..+...++.++. . .+++.+|
T Consensus 120 L~~l~~~--i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A 197 (310)
T 3mv2_B 120 LETCVEG--IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSN 197 (310)
T ss_dssp HHHHHHH--HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHH
T ss_pred HHHHHHH--hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHH
Confidence 8888776 55543 23566677777888888888888888887764 4 1344455555522 2 2378888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcC--------CCCChhHHHHHHHHHHhcCCHHHHH
Q 012101 310 LDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ--------IEPRFAHYGCMVDLLGRAGLLEEAR 381 (471)
Q Consensus 310 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~ 381 (471)
..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.++ -+-+..+...+|......|+ +|.
T Consensus 198 ~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~ 273 (310)
T 3mv2_B 198 FYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE 273 (310)
T ss_dssp HHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH
T ss_pred HHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH
Confidence 8888887654 45533334444577778888888888876654310 02344555455555555665 777
Q ss_pred HHHHhC-CCCCCHH
Q 012101 382 AMVEGM-PMKANVV 394 (471)
Q Consensus 382 ~~~~~m-~~~p~~~ 394 (471)
++++++ ...|+..
T Consensus 274 ~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 274 DLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHTTCCCH
T ss_pred HHHHHHHHhCCCCh
Confidence 777777 4555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-09 Score=107.95 Aligned_cols=161 Identities=12% Similarity=0.071 Sum_probs=127.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA 334 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 334 (471)
+...++.+..+|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 356677788888888888888888877654 446778888888888888888888888887753 2246678888888
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~ 411 (471)
+...|++++|.+.|++..+. .| +...|..+..+|...|++++|.+.|++. .+.| +...+..+..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88889999999998888765 34 4567888888999999999999999887 6666 45688889999999999999
Q ss_pred HHHHHHHHHhc
Q 012101 412 GEWVAKHLQEL 422 (471)
Q Consensus 412 a~~~~~~~~~~ 422 (471)
|.+.++++.++
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888888764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-09 Score=95.70 Aligned_cols=204 Identities=10% Similarity=-0.014 Sum_probs=148.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-------C--CHhhHHHHHHHHHhCCChh
Q 012101 237 DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-------P--NVSSWTSMIVGYAANGLAN 307 (471)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~ 307 (471)
++++|...|... ...|...|++++|...|.+..+ + ...+|+.+..+|...|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477777777655 3356778999888888876643 1 1457888999999999999
Q ss_pred HHHHHHHHHHHcCC---CCC--HHHHHHHHHHhccC-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCH
Q 012101 308 EALDCFHYMRESGI---RPN--HVTFVGVLSACVHG-GKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 308 ~a~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~ 377 (471)
+|+..+++..+... .+. ..++..+...|... |++++|...|++..+...-..+ ..++..+...|.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 99999988765311 111 35778888889986 9999999999998764211111 34678889999999999
Q ss_pred HHHHHHHHhC-CCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHH--cCC
Q 012101 378 EEARAMVEGM-PMKANV--------VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG-----AYVVLSNIYA--SRG 441 (471)
Q Consensus 378 ~~A~~~~~~m-~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g 441 (471)
++|...|++. ...|+. ..|..+..++...|++++|...+++..++.|.... .+..++..|. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9999999998 333321 25777888999999999999999999998876443 2344566665 567
Q ss_pred ChHHHHHHHHHhhcCC
Q 012101 442 LWEEVERIRAVMKHRN 457 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~~ 457 (471)
++++|++.|+.+...+
T Consensus 255 ~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLD 270 (292)
T ss_dssp THHHHHHHHTTSSCCC
T ss_pred HHHHHHHHhccCCccH
Confidence 8999999998776543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-09 Score=81.60 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=75.0
Q ss_pred HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc
Q 012101 329 VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMK-ANVVIWGCLMGACEKF 406 (471)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~ 406 (471)
..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++ ... .+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 334444445555555555555554331 123344555555555556666666665555 222 2445566666667777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 407 GNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 407 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
|++++|.+.++++.+..|.++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777766666666667777777777777777777766553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-08 Score=87.38 Aligned_cols=184 Identities=10% Similarity=-0.013 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC--CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHH
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN----VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH--VTFVGV 331 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l 331 (471)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|...|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3455566677778888888888887764 32 245666777788888888888888887765322111 123333
Q ss_pred HHHhcc------------------CCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 012101 332 LSACVH------------------GGKVQEGKHFFEMMKNVYQIEPRFA-HYGCMVDLLGRAGLLEEARAMVEGMPMKAN 392 (471)
Q Consensus 332 l~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 392 (471)
..++.. .|+.++|...|+++.+. .|+.. .+...... +......
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~----------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL----------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH-----------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH-----------
Confidence 333332 35566666666666543 23221 11111100 0000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 393 VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD---GAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 393 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
......+...+.+.|++++|...|+++.+..|.++ ..+..++.+|.+.|++++|.+.++.+...++...
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 01113456778899999999999999999998765 4688899999999999999999999988776544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.2e-09 Score=91.10 Aligned_cols=183 Identities=13% Similarity=-0.011 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC-HHHHHHHHH
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ--PN----VSSWTSMIVGYAANGLANEALDCFHYMRESGI-RPN-HVTFVGVLS 333 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~ll~ 333 (471)
+-.+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|...|++..+... .|. ...+..+..
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 33334444444444444444444432 11 23344444455555555555555555544311 111 222333333
Q ss_pred Hhcc--------CCcHHHHHHHHHHhHHhcCCCCChh---------------HHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 012101 334 ACVH--------GGKVQEGKHFFEMMKNVYQIEPRFA---------------HYGCMVDLLGRAGLLEEARAMVEGM-PM 389 (471)
Q Consensus 334 ~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m-~~ 389 (471)
++.. .|++++|...|+++.+.+.-.+... .+..+...|.+.|++++|...|+.+ ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4444 5555555555555544321111111 1245677888899999999988887 33
Q ss_pred CCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChH
Q 012101 390 KAN----VVIWGCLMGACEKF----------GNVKMGEWVAKHLQELEPWSDG---AYVVLSNIYASRGLWE 444 (471)
Q Consensus 390 ~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 444 (471)
.|+ ...+..+..+|... |++++|...++++.+..|.++. ....+..++.+.++++
T Consensus 178 ~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 178 YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 333 35677777788766 8889999999999998887763 3334444444444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-08 Score=87.54 Aligned_cols=170 Identities=11% Similarity=-0.013 Sum_probs=136.6
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hh
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN----HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FA 362 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~ 362 (471)
.+...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...|+.+.+.++-.|. ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456677778888999999999999999998863 33 567778888999999999999999999876432333 34
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHH
Q 012101 363 HYGCMVDLLGR--------AGLLEEARAMVEGM-PMKANV-VIW-----------------GCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 363 ~~~~li~~~~~--------~g~~~~A~~~~~~m-~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~~ 415 (471)
.+..+..++.. .|++++|...|++. ...|+. ... ..+...|.+.|++++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 56677888888 99999999999998 333432 222 5567889999999999999
Q ss_pred HHHHHhcCCCCC---chHHHHHHHHHcC----------CChHHHHHHHHHhhcCCCc
Q 012101 416 AKHLQELEPWSD---GAYVVLSNIYASR----------GLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 416 ~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~ 459 (471)
|+++.+..|.++ ..+..++.+|... |++++|.+.++++.+..+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 999999988754 3677888888866 8999999999999876543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-08 Score=77.54 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=97.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLL 371 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 371 (471)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 45666777777888888888888877653 3355667777777778888888888888876542 33456677778888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 372 GRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888877 3333 5667888888888889999999998888877664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-07 Score=80.22 Aligned_cols=162 Identities=8% Similarity=-0.086 Sum_probs=116.1
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC----cHHHHHHHHHHhHHhcCCCCChhH
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG----KVQEGKHFFEMMKNVYQIEPRFAH 363 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~ 363 (471)
.++..+..+...|...+++++|...|++..+.| +...+..+-..|.. + ++++|.+.|++..+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 455566666666777777777777777777665 44555556666666 5 788888888887543 34556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHH
Q 012101 364 YGCMVDLLGR----AGLLEEARAMVEGM-PMKAN---VVIWGCLMGACEK----FGNVKMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 364 ~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
+..|...|.. .+++++|.++|++. ...|+ ...+..|...|.. .+++++|...|++..+. +.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6667777766 77888888888887 44443 6777778888877 77888888888888877 33556777
Q ss_pred HHHHHHHcC-C-----ChHHHHHHHHHhhcCCC
Q 012101 432 VLSNIYASR-G-----LWEEVERIRAVMKHRNL 458 (471)
Q Consensus 432 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 458 (471)
.|..+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888888754 3 78888888888877664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.2e-09 Score=105.82 Aligned_cols=170 Identities=8% Similarity=-0.044 Sum_probs=98.8
Q ss_pred cCcCCHHHHHHHHHHHHHhh-------cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHh
Q 012101 233 GSLGDLELALQVHKYVFQVK-------SKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAA 302 (471)
Q Consensus 233 ~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 302 (471)
...|++++|.+.+++. .. ...+.+...+..+..+|.+.|++++|...|++..+ .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~a--l~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAA--RHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHH--HTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHh--hhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 5566667777666666 31 11233445566666666666777777666666553 345566666666666
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 012101 303 NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARA 382 (471)
Q Consensus 303 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 382 (471)
.|++++|...|++..+.. +-+...+..+..++.+.|++++ .+.|+++.+.. +.+...|..+..+|.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 677777777666666542 2234455566666666666666 66666665431 2234456666666666677777766
Q ss_pred HHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 012101 383 MVEGM-PMKANV-VIWGCLMGACEKFGN 408 (471)
Q Consensus 383 ~~~~m-~~~p~~-~~~~~l~~~~~~~~~ 408 (471)
.|++. ...|+. ..+..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 66666 555543 355555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=85.78 Aligned_cols=139 Identities=9% Similarity=-0.059 Sum_probs=95.7
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 012101 300 YAANGLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
+...|++++|+..++..... .|+ ...+..+...|.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchH
Confidence 33445666666666665432 232 2344456666777777777777777776542 234566777777777888888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 012101 379 EARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEW-VAKHLQELEPWSDGAYVVLSNIYASRGL 442 (471)
Q Consensus 379 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 442 (471)
+|...|++. .+.| +..+|..+...|.+.|+++++.+ +++++.++.|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888877777 5555 46678888888888888876554 4588888888888888888888877764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-08 Score=87.77 Aligned_cols=172 Identities=6% Similarity=-0.074 Sum_probs=125.5
Q ss_pred HHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCC
Q 012101 279 YKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIE 358 (471)
Q Consensus 279 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (471)
...+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++.+... .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~ 181 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D 181 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence 333444333444556667777788888888888888887763 224566777778888888888888888888654 4
Q ss_pred CChhHHHHHH-HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHH
Q 012101 359 PRFAHYGCMV-DLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS--DGAYVVL 433 (471)
Q Consensus 359 p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l 433 (471)
|+........ ..+...++.++|.+.+++. ...| +...+..+..++...|++++|...++++.+..|.+ ...+..+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 5544332222 2355667777788877777 4445 56788888899999999999999999999988876 6688899
Q ss_pred HHHHHcCCChHHHHHHHHHhh
Q 012101 434 SNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~m~ 454 (471)
+.+|...|+.++|...+++..
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999888887654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-08 Score=98.31 Aligned_cols=160 Identities=8% Similarity=-0.054 Sum_probs=122.0
Q ss_pred cCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHH
Q 012101 272 CGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
.|++++|...|++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 456788889999999999999999999998763 335678888889999999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 012101 349 EMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF---GNVKMGEWVAKHLQELE 423 (471)
Q Consensus 349 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 423 (471)
++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9997652 334678888999999999999999999998 4445 567888899999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 012101 424 PWSDGAYVVLS 434 (471)
Q Consensus 424 ~~~~~~~~~l~ 434 (471)
|.+...+..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98877776665
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-07 Score=85.43 Aligned_cols=218 Identities=13% Similarity=0.040 Sum_probs=151.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC-cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012101 200 DGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS-LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLA 278 (471)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 278 (471)
.|++++|.+++++..+.. +.. +.+ .++++.|...|... ...|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHH
Confidence 467888888888777542 111 122 46777777776654 3456778888888
Q ss_pred HHHHHhcCC-----CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCC--HHHHHHHHHHhccCCcHHHH
Q 012101 279 YKVFWEIDQ-----PN----VSSWTSMIVGYAANGLANEALDCFHYMRESG---IRPN--HVTFVGVLSACVHGGKVQEG 344 (471)
Q Consensus 279 ~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~ll~~~~~~~~~~~a 344 (471)
...|.+..+ .+ ..+|+.+...|...|++++|...|++..+.- -.|. ..++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 887776543 11 3477888888999999999999998865431 1222 3567777888888 999999
Q ss_pred HHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHH
Q 012101 345 KHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM-PM---KAN----VVIWGCLMGACEKFGNVKMG 412 (471)
Q Consensus 345 ~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~l~~~~~~~~~~~~a 412 (471)
...|++..+...-..+ ..++..+...|.+.|++++|.+.|++. .+ .++ ...+..+..++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988654211111 356778889999999999999999987 21 111 23666777788888999999
Q ss_pred HHHHHHHHhcCCCCCch-----HHHHHHHHHcCCChHHHHH
Q 012101 413 EWVAKHLQELEPWSDGA-----YVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 413 ~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~ 448 (471)
...+++.. ..|..... ...++.++ ..|+.+.+.+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999 77654432 33455555 5677766655
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-07 Score=93.61 Aligned_cols=181 Identities=12% Similarity=0.011 Sum_probs=142.9
Q ss_pred HcCCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 012101 198 SQDGRAKEAIDMFIGLK--------KCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMY 269 (471)
Q Consensus 198 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (471)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|.+.++++ ++.. +.+...+..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDL--AERV-GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHH-CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHH--hccC-cchHHHHHHHHHHH
Confidence 77899999999999987 33 2445677888888999999999999999998 5443 33577888899999
Q ss_pred HhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHH
Q 012101 270 GKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
...|++++|...|++..+ .+...|..+..++.+.|++++ ...|++..+.. +-+...+..+..++.+.|++++|.+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998764 456788889999999999999 99999988763 3356778888889999999999999
Q ss_pred HHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC--------HHHHHHHHHhC
Q 012101 347 FFEMMKNVYQIEPR-FAHYGCMVDLLGRAGL--------LEEARAMVEGM 387 (471)
Q Consensus 347 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m 387 (471)
.|+++.+ +.|+ ...+..+..++...++ +++|.+.+..+
T Consensus 556 ~~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999864 3565 4566677777766444 66677777766
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-09 Score=87.01 Aligned_cols=126 Identities=9% Similarity=-0.086 Sum_probs=104.0
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGN 408 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~ 408 (471)
-..+...|++++|+..++.... ..|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3456677899999999988753 2343 345567889999999999999999998 6666 67799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH-HHHhhcCCCcc
Q 012101 409 VKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERI-RAVMKHRNLAK 460 (471)
Q Consensus 409 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~~ 460 (471)
+++|+..|+++.+.+|.++..+..++.+|.+.|++++|.+. +++..+..+..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999887765 58777765543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-08 Score=81.56 Aligned_cols=156 Identities=8% Similarity=-0.073 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG 338 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 338 (471)
+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|...+++..+. .|+...........
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~--- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLE--- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHH---
Confidence 33445555566666666666666554 33445555555555666666666665555433 22222111110000
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
+...+...+|.+.+++. ...| +...+..+..++...|++++|...+
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00111111234444443 3334 3556666666777777777777777
Q ss_pred HHHHhcCCCC--CchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 417 KHLQELEPWS--DGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 417 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
+++.+..|.+ +..+..++.+|...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 7777666543 3366667777777777777777666543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-07 Score=79.35 Aligned_cols=185 Identities=14% Similarity=-0.004 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHh----h
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK--SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVS----S 292 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 292 (471)
+...+..+...+.+.|++++|...|+.+ ++.... .....+..+..+|.+.|++++|...|+++.+ |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~--~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEAL--DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3455666777889999999999999999 554322 2245778889999999999999999999865 4322 4
Q ss_pred HHHHHHHHHh------------------CCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 293 WTSMIVGYAA------------------NGLANEALDCFHYMRESGIRPNHV-TFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 293 ~~~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
+..+..++.. .|++++|...|+++.+. .|+.. ....... ...+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH-
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH-
Confidence 4445555544 57899999999999876 44432 2111110 011111111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 354 VYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 354 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|.+..
T Consensus 148 --------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 --------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred --------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11234667888999999999999998 44443 256888899999999999999999999988876543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-06 Score=77.64 Aligned_cols=160 Identities=8% Similarity=-0.039 Sum_probs=117.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHH----HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESG-IRPNHV----TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYG 365 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~ 365 (471)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999998887642 123321 2334566677788999999999998763222233 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchH
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-----PM---KAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS------DGAY 430 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~ 430 (471)
.+...|...|++++|...++++ .. .+. ..++..+...|.+.|++++|...+++..+..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888999999999999988877 11 122 2378889999999999999999999988754221 3478
Q ss_pred HHHHHHHHcCCC-hHHHHHHHHHhh
Q 012101 431 VVLSNIYASRGL-WEEVERIRAVMK 454 (471)
Q Consensus 431 ~~l~~~~~~~g~-~~~A~~~~~~m~ 454 (471)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 889999999994 699988887765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-07 Score=92.48 Aligned_cols=147 Identities=10% Similarity=-0.047 Sum_probs=106.8
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHH
Q 012101 235 LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALD 311 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 311 (471)
.|++++|.+.+++. .+.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~a--l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAA--VRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47888999999888 4432 33567888899999999999999999988765 456788888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 012101 312 CFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA---GLLEEARAMVEGM 387 (471)
Q Consensus 312 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 387 (471)
.+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++.
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999988763 3356788888889999999999999999987652 23466788888889888 9999999999888
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3.5e-08 Score=78.27 Aligned_cols=97 Identities=8% Similarity=-0.138 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
..+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|...|+++.++.|.++..|..++.+|.+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 35666677777888888888888887 4455 566788888888888888888888888888888888888888888888
Q ss_pred CCChHHHHHHHHHhhcCCC
Q 012101 440 RGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~ 458 (471)
.|++++|.+.|++..+...
T Consensus 117 lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 8888888888888776543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-07 Score=79.04 Aligned_cols=130 Identities=13% Similarity=-0.097 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
..+..+...+...|++++|...|++. +.|+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHH
Confidence 34556677788899999999998876 36678888888888999999999999999887652 3456678888889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 371 LGRAGLLEEARAMVEGM-PMKA-----------------NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
|...|++++|.+.|++. ...| ....+..+..++...|++++|...++++.+..|.+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999998887 2222 22678888888999999999999999998888765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.77 E-value=8.6e-06 Score=78.15 Aligned_cols=349 Identities=10% Similarity=-0.039 Sum_probs=210.2
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCC-CCchhhHHHHHHHHHhCCC-chHHHHHHHHHHHC-CCCC-CcchHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHS-YSAAFHWNNIIRLYTRLEA-PKKALDIYIFMSRA-GVLP-DCYTLPIVL 128 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~~~~~ll 128 (471)
+|..-+..+-. ++.+.+..+|++.-. .|++..|...+....+.++ .+....+|+..... |..| +...|...+
T Consensus 17 vyer~l~~~P~----~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS----KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 66666666643 668888888887643 4788888888887777663 45567778777653 4322 445566666
Q ss_pred HHHh----ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHH-------------hcCChhhHHHHhccCC----CCCc
Q 012101 129 KASC----QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYS-------------KAGDFEKARKVFDENP----ERKL 187 (471)
Q Consensus 129 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~a~~~~~~~~----~~~~ 187 (471)
..+. ..++.+.+..+|+..++.....-...|......-. ..+.+..|..+++... ..+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 5543 23567888889998887321111112222111100 0112222333332221 1122
Q ss_pred chHHHHHHHHHcCC--C-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChh
Q 012101 188 GSWNAIIAGLSQDG--R-----AKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTL 260 (471)
Q Consensus 188 ~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 260 (471)
..|...+.--...+ - .+.+..+|+++... .+-+...|...+..+.+.|+.+.|..+++.. +.. +.+..
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erA--i~~--P~~~~ 247 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERG--IEM--SDGMF 247 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHH--CCSSH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhC--CCcHH
Confidence 34555444332221 1 34567788888875 3556777887888888889999999999999 665 33333
Q ss_pred HHHHHHHHHHhcCChHH-HHHHHHhcC----------C--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 261 MLNSLIDMYGKCGRMDL-AYKVFWEID----------Q--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~-A~~~~~~~~----------~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
.+.. |....+.++ ...+.+... . .....|...+....+.++.+.|..+|.+. .. ...+...
T Consensus 248 l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v 321 (493)
T 2uy1_A 248 LSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHV 321 (493)
T ss_dssp HHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHH
T ss_pred HHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHH
Confidence 3332 222211111 122222211 0 11245666677776778899999999988 32 1223344
Q ss_pred HHH--HHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012101 328 FVG--VLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEK 405 (471)
Q Consensus 328 ~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 405 (471)
|.. .+.... .++.+.|..+|+...+.++- +...+...++...+.|+.+.|..+|+++. .....|...+..-..
T Consensus 322 ~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 322 FIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 432 222222 34699999999999876432 34456667887888999999999999983 257788888888888
Q ss_pred cCCHHHHHHHHHHHHh
Q 012101 406 FGNVKMGEWVAKHLQE 421 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~ 421 (471)
.|+.+.+..++++..+
T Consensus 397 ~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 397 VGSMELFRELVDQKMD 412 (493)
T ss_dssp HSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999999998888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-07 Score=76.95 Aligned_cols=155 Identities=12% Similarity=0.024 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHH-H
Q 012101 224 TMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVG-Y 300 (471)
Q Consensus 224 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~ 300 (471)
.+......+.+.|++++|...++.. .+.. +.+...+..+..+|.+.|++++|...|++..+ |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~a--l~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTL--SDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTS--CHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH--HHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 4556677788999999999999988 4433 33577889999999999999999999999876 433332222111 1
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR---FAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~ 377 (471)
...+...+|...+++..+.. +-+...+..+..++...|++++|...|+++.+. .|+ ...+..+...+...|+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCC
Confidence 12222334555565555542 113445555555566666666666666665433 232 33455555555555555
Q ss_pred HHHHHHHH
Q 012101 378 EEARAMVE 385 (471)
Q Consensus 378 ~~A~~~~~ 385 (471)
++|...|+
T Consensus 161 ~~A~~~y~ 168 (176)
T 2r5s_A 161 NAIASKYR 168 (176)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 55555544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-07 Score=79.08 Aligned_cols=128 Identities=7% Similarity=-0.074 Sum_probs=91.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA 374 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 374 (471)
.+..++.+.|++++|...|++..+.. +-+...+..+..++...|++++|...|+++.+.. +.+...+..+...|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 37778888899999999998888763 3356777888888888999999999999887652 23456777777777655
Q ss_pred CC--HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 375 GL--LEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 375 g~--~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
|. .+.+...++.. ...|....+.....++...|++++|...|+++.++.|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 54 34456666665 32333334455566677788999999999999988885
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-07 Score=78.69 Aligned_cols=173 Identities=12% Similarity=-0.025 Sum_probs=126.0
Q ss_pred HHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC----CchHHHHHHHHH
Q 012101 72 AHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF----ALEIGRQLHSLA 147 (471)
Q Consensus 72 ~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~ 147 (471)
+|++.|++.-...+..++..+-..|...+++++|+..|++..+.| +...+..+-..+.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 345555555444677788888888888899999999999888765 55667777777776 6 788899999888
Q ss_pred HHhCCCCCcchHHHHHHHHHh----cCChhhHHHHhccCCCCCc-----chHHHHHHHHHc----CCChhHHHHHHHHHH
Q 012101 148 VRLGLESNEFCESGFISLYSK----AGDFEKARKVFDENPERKL-----GSWNAIIAGLSQ----DGRAKEAIDMFIGLK 214 (471)
Q Consensus 148 ~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~-----~~~~~li~~~~~----~~~~~~a~~~~~~m~ 214 (471)
.+.| +...+..|...|.. .+++++|.++|++..+.+. .++..|...|.. .+++++|+..|++..
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7755 55666777777776 7888888888888766543 577888888877 778888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHcC------cCCHHHHHHHHHHHHHhhcCC
Q 012101 215 KCGFEPDDVTMVSVTSACGS------LGDLELALQVHKYVFQVKSKQ 255 (471)
Q Consensus 215 ~~g~~p~~~~~~~li~~~~~------~~~~~~a~~~~~~~~~~~~~~ 255 (471)
+. ..+...+..+...|.. ..++++|...|+.. .+.|.
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A--~~~g~ 199 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS--CLEGF 199 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH--HHHTC
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH--HHcCC
Confidence 76 2333455555555542 23788888888887 55553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.2e-07 Score=80.94 Aligned_cols=164 Identities=7% Similarity=-0.068 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHH
Q 012101 219 EPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSM 296 (471)
Q Consensus 219 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l 296 (471)
+.+...+..+...+...|++++|...+++. .... +.+...+..+..+|.+.|++++|...++++.. |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a--l~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDA--WQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHH--HHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 344455666677777888888888888887 4433 23566777788888888888888888888765 544322222
Q ss_pred -HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 012101 297 -IVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG 375 (471)
Q Consensus 297 -i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 375 (471)
...+...++.++|...+++..+.. +.+...+..+...+...|++++|...+.++.+...-..+...+..+...|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 223556667777777777777653 334566667777777788888888888877665211112456667777777777
Q ss_pred CHHHHHHHHHh
Q 012101 376 LLEEARAMVEG 386 (471)
Q Consensus 376 ~~~~A~~~~~~ 386 (471)
+.++|...+++
T Consensus 270 ~~~~a~~~~r~ 280 (287)
T 3qou_A 270 TGDALASXYRR 280 (287)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 77666665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-07 Score=81.04 Aligned_cols=163 Identities=8% Similarity=-0.063 Sum_probs=110.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H----HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCC--CCC--hh
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPN-H----VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQI--EPR--FA 362 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p~--~~ 362 (471)
.+...+..+...|++++|.+.+.+..+.....+ . ..+..+...+...|++++|...+++..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677778888888888877766432211 1 12333445567778888888888887643111 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----C
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM----PMKAN-----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW--S----D 427 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~ 427 (471)
+++.+...|...|++++|...+++. ...|+ ..++..+..+|...|++++|...+++..+..+. + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6778888888888888888888776 11122 257888888999999999999999888765321 1 2
Q ss_pred chHHHHHHHHHcCCChHHH-HHHHHHhh
Q 012101 428 GAYVVLSNIYASRGLWEEV-ERIRAVMK 454 (471)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 454 (471)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4677888899999999999 66666653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-06 Score=80.50 Aligned_cols=337 Identities=7% Similarity=-0.104 Sum_probs=203.9
Q ss_pred CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC-chHHHHHHHHHHHh-CCC-CCcchHHHHHHHHH----hcCCh
Q 012101 100 EAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFA-LEIGRQLHSLAVRL-GLE-SNEFCESGFISLYS----KAGDF 172 (471)
Q Consensus 100 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~----~~g~~ 172 (471)
|+++.+..+|++.... .|+...|..-+....+.++ .+....+|+..+.. |.. .+...|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999874 5798999988887777663 46678888887764 533 35567777776654 34678
Q ss_pred hhHHHHhccCCC-C--Ccc-hHHHHHHHHH-------------cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCc
Q 012101 173 EKARKVFDENPE-R--KLG-SWNAIIAGLS-------------QDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSL 235 (471)
Q Consensus 173 ~~a~~~~~~~~~-~--~~~-~~~~li~~~~-------------~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 235 (471)
+.+.++|++... | +.. .|......-. ..+.+..|..+++.+...--..+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 889999987643 2 111 2222211100 0112333444444443210001233454444432221
Q ss_pred --C--C---HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCHh-hHHHHHHHHHhCCCh
Q 012101 236 --G--D---LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PNVS-SWTSMIVGYAANGLA 306 (471)
Q Consensus 236 --~--~---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~li~~~~~~~~~ 306 (471)
+ + .+.+..+|+++ +... +.+..+|-..+..+.+.|+.++|..+|++... |+.. .|. .|....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~a--l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYI--LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHH--HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHH--HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcch
Confidence 1 1 34567788888 5543 44577888888888899999999999986543 3322 222 23322222
Q ss_pred hHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 012101 307 NEALDCFHYMRESG---------IRP---NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA 374 (471)
Q Consensus 307 ~~a~~~~~~m~~~~---------~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 374 (471)
++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.. ...+ .+...|......-...
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYA 332 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHH
Confidence 222 33332211 011 1234555666666678899999999998 4312 2444454333332233
Q ss_pred C-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 375 G-LLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 375 g-~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
+ +++.|.++|+.. ..-| +...|...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++
T Consensus 333 ~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 699999999987 2123 34456667777788999999999999972 234567777777778899999999888
Q ss_pred Hhhc
Q 012101 452 VMKH 455 (471)
Q Consensus 452 ~m~~ 455 (471)
++.+
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=7.3e-07 Score=75.31 Aligned_cols=131 Identities=10% Similarity=-0.048 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcH
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKV 341 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 341 (471)
+..+...+...|++++|...|++..+++...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 45567778889999999999999988888899999999999999999999999988763 34567788888889999999
Q ss_pred HHHHHHHHHhHHhcCCCC--------------ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 012101 342 QEGKHFFEMMKNVYQIEP--------------RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV 393 (471)
Q Consensus 342 ~~a~~~~~~~~~~~~~~p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 393 (471)
++|.+.|+...+...-.+ ....+..+..+|.+.|++++|.+.|+.. ...|+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999876422111 1257788889999999999999999998 666754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-07 Score=77.54 Aligned_cols=132 Identities=14% Similarity=-0.020 Sum_probs=67.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK 340 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 340 (471)
.+..+|.+.|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +-+...+..+...|...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 355566666666666666665543 344556666666666666666666666666542 2234455555555443332
Q ss_pred --HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 012101 341 --VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCL 399 (471)
Q Consensus 341 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 399 (471)
.+.+...++... ...|....+.....++...|++++|...|++. ...|+......+
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 233344444432 11222222333344555566667777766665 566665544433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=72.60 Aligned_cols=105 Identities=6% Similarity=-0.051 Sum_probs=51.2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
.+......|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34444445555555555555555554331 123344445555555555555555555554 3233 3344555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 012101 405 KFGNVKMGEWVAKHLQELEPWSDGAYVVL 433 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 433 (471)
..|++++|.+.|++..++.|.++..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 55555555555555555555444444333
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.2e-07 Score=82.67 Aligned_cols=196 Identities=10% Similarity=-0.017 Sum_probs=146.5
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHH
Q 012101 234 SLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK-CGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDC 312 (471)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (471)
..|++++|.+++++. .+.... . +.+ .+++++|...|.+. ...|...|++++|...
T Consensus 3 ~~~~~~eA~~~~~~a--~k~~~~-~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKA--EKYLKT-S----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHH--HHHHCC-C----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHH--HHHccc-c----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHH
Confidence 457888999999887 432211 1 112 57888888876653 5678889999999999
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCC--CC--hhHHHHHHHHHHhcCCHHHHHHH
Q 012101 313 FHYMRES----GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIE--PR--FAHYGCMVDLLGRAGLLEEARAM 383 (471)
Q Consensus 313 ~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p~--~~~~~~li~~~~~~g~~~~A~~~ 383 (471)
|.+..+. +-.+ -..+|..+...|...|++++|...|++..+.+.-. +. ..++..+...|.. |++++|.+.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9987653 2111 13478888888999999999999999876542111 11 3567788888988 999999999
Q ss_pred HHhC-CCC-----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHcCCChHHHHHH
Q 012101 384 VEGM-PMK-----A--NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD------GAYVVLSNIYASRGLWEEVERI 449 (471)
Q Consensus 384 ~~~m-~~~-----p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~ 449 (471)
+++. .+. + ...++..+...+.+.|++++|...+++..+..+.+. ..+..++.++...|++++|.+.
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987 111 1 145788899999999999999999999988754332 2566677888899999999999
Q ss_pred HHHhh
Q 012101 450 RAVMK 454 (471)
Q Consensus 450 ~~~m~ 454 (471)
+++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99988
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.6e-07 Score=73.00 Aligned_cols=126 Identities=8% Similarity=0.013 Sum_probs=90.2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34555556666777777777777766542 234566677777777788888888777776 3333 5667888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHH--HHHHHcCCChHHHHHHHHHhh
Q 012101 405 KFGNVKMGEWVAKHLQELEPWSDGAYVVL--SNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 454 (471)
..|++++|...++++.+..|.+...+..+ +..+.+.|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88999999999988888888776666443 444777888888888877664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.2e-06 Score=74.43 Aligned_cols=220 Identities=8% Similarity=-0.016 Sum_probs=113.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcC--CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHH----Hhc-
Q 012101 200 DGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLG--DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMY----GKC- 272 (471)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 272 (471)
....++|+.+++.+.... +-+...|+.--.++...+ +++++.+.++.+ +.... .+..+|+--...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~--L~~nP-k~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEI--ALDNE-KNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHH--HHHCT-TCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHH--HHHCc-ccHHHHHHHHHHHHHHHHhcc
Confidence 334467888888777652 333445565555566666 777888877777 44432 2333444333333 333
Q ss_pred --CChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc-----
Q 012101 273 --GRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLAN--EALDCFHYMRESGIRPNHVTFVGVLSACVHGGK----- 340 (471)
Q Consensus 273 --g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----- 340 (471)
++++++..+++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 566666666666553 44455555555555566665 66666666665532 244444444333444443
Q ss_pred -HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHH
Q 012101 341 -VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEE-ARAMVEGM-PM----KANVVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 341 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~l~~~~~~~~~~~~a~ 413 (471)
++++.+.++.+.... +-|...|+.+-..+.+.|+... +..+.++. .. ..+...+..+..++.+.|+.++|.
T Consensus 201 ~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 555555555554431 2333444444444444444222 33344443 11 124445555555555555555555
Q ss_pred HHHHHHHh-cCCCC
Q 012101 414 WVAKHLQE-LEPWS 426 (471)
Q Consensus 414 ~~~~~~~~-~~~~~ 426 (471)
++++.+.+ .+|..
T Consensus 279 ~~~~~l~~~~Dpir 292 (306)
T 3dra_A 279 TVYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHHHTTCGGG
T ss_pred HHHHHHHhccChHH
Confidence 55555543 34433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.5e-08 Score=78.90 Aligned_cols=123 Identities=8% Similarity=0.033 Sum_probs=65.4
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCH--H
Q 012101 302 ANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL-LGRAGLL--E 378 (471)
Q Consensus 302 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 378 (471)
..|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4455666666666655542 2344555555566666666666666666655432 1234445555555 5555665 6
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 379 EARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 379 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
+|...+++. ...| +...+..+...+...|++++|...++++.+..|.++
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 666666655 3333 344555555666666666666666666666655543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=4e-07 Score=69.80 Aligned_cols=104 Identities=10% Similarity=0.038 Sum_probs=86.7
Q ss_pred CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 012101 357 IEPRF-AHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVL 433 (471)
Q Consensus 357 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 433 (471)
+.|+. ..+......|.+.|++++|.+.|++. ...| +..+|..+..++.+.|++++|+..+++..+++|.+...|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34443 45667788899999999999999987 4455 677888888999999999999999999999999888889999
Q ss_pred HHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 434 SNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
+.+|...|++++|.+.|++..+..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 999999999999999999988765543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-06 Score=77.79 Aligned_cols=162 Identities=10% Similarity=-0.049 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC---CCH------hhHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HH
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNV------SSWTSMIVGYAANGLANEALDCFHYMRESGI---RPN--HV 326 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~ 326 (471)
.+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566677788888888888765432 111 2233455566778899999999988775321 122 34
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-C------CCC-CH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-----FAHYGCMVDLLGRAGLLEEARAMVEGM-P------MKA-NV 393 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~------~~p-~~ 393 (471)
+++.+...|...|++++|...+++..+.....|+ ..++..+...|...|++++|.+.+++. . ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888889999999999999888632111222 247788888999999999999998876 1 111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 012101 394 VIWGCLMGACEKFGNVKMG-EWVAKHLQEL 422 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 422 (471)
.+|..+..+|.+.|++++| ...+++....
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788889999999999999 7778877653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=7.9e-06 Score=72.88 Aligned_cols=158 Identities=12% Similarity=-0.036 Sum_probs=117.2
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC-----CCH----hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CC----HHHHHH
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQ-----PNV----SSWTSMIVGYAANGLANEALDCFHYMRESGIR-PN----HVTFVG 330 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 330 (471)
.+..+...|++++|..++++..+ ++. ..+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678888999999999887654 121 12334666667778999999999998874322 22 236888
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNVY----QIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-------PMKAN-VVIWG 397 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~ 397 (471)
+...|...|++++|...|+++.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887421 11122 236778889999999999999998876 22233 56888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhc
Q 012101 398 CLMGACEKFGN-VKMGEWVAKHLQEL 422 (471)
Q Consensus 398 ~l~~~~~~~~~-~~~a~~~~~~~~~~ 422 (471)
.+..++.+.|+ +++|...++++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.7e-05 Score=67.65 Aligned_cols=212 Identities=17% Similarity=0.103 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhcCC---CCHhhHHHHHHHH----HhC---CC
Q 012101 238 LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG--RMDLAYKVFWEIDQ---PNVSSWTSMIVGY----AAN---GL 305 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---~~ 305 (471)
.++|.++++.+ +.... -+..+|+.--.++...| +++++.++++.+.. .+..+|+.--..+ ... ++
T Consensus 49 s~~aL~~t~~~--L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELG--INELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHH--HHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHH--HHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 35677777777 44432 24556777777777777 88999888888765 3445666544444 444 77
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC------H
Q 012101 306 ANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQ--EGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL------L 377 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~ 377 (471)
+++++.+++++.+.. +-+...|..-...+.+.|.++ ++.+.++++.+.. .-|...|+.-...+...|+ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhH
Confidence 888899998888764 335666666555566667776 8888888887652 3455566655555556665 7
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 378 EEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV-KMGEWVAKHLQELE---PWSDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 378 ~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
+++++.++.+ ...| |...|+.+...+.+.|+. +.+..+.+++.+.+ +.++..+..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8888888877 4444 677888888888777774 44566777766655 5566677888888888899999999998
Q ss_pred Hhhc
Q 012101 452 VMKH 455 (471)
Q Consensus 452 ~m~~ 455 (471)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.61 E-value=7.2e-07 Score=67.73 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMK-ANVVIWGCLMGA 402 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~ 402 (471)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++ ... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3455556666666777777777777665441 234556666677777777777777777766 222 355677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
+...|++++|...++++.+..|.++..+..+..++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 8888888888888888888777766666666666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=74.49 Aligned_cols=90 Identities=9% Similarity=0.016 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
.+...+.+.|++++|...|+.. ...| +...|..+..+|...|++++|...++++.+..|.++..+..++.+|...|++
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 3334444444444444444444 2222 3334444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhhc
Q 012101 444 EEVERIRAVMKH 455 (471)
Q Consensus 444 ~~A~~~~~~m~~ 455 (471)
++|.+.|++..+
T Consensus 106 ~~A~~~~~~al~ 117 (148)
T 2vgx_A 106 AEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-07 Score=73.54 Aligned_cols=91 Identities=8% Similarity=-0.084 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
.+...+.+.|++++|...|+.. ...| +...|..+..++...|++++|...++++.+..|.++..+..++.+|...|++
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3444455555555555555554 2223 3445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhcC
Q 012101 444 EEVERIRAVMKHR 456 (471)
Q Consensus 444 ~~A~~~~~~m~~~ 456 (471)
++|.+.|++..+.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-07 Score=83.14 Aligned_cols=143 Identities=12% Similarity=-0.044 Sum_probs=97.2
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
...|..+...+.+.|++++|...|++..+.. |+...+ ..+.+.++- . .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-A--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-H--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-H--------HHHHHHHHHHH
Confidence 3456666666667777777777777666542 221100 001111000 0 01356777778
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHH-
Q 012101 370 LLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEV- 446 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 446 (471)
+|.+.|++++|...+++. .+.| +...|..+..+|...|++++|...|+++.++.|.+...+..+..++.+.|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887 4444 5678888888899999999999999999999888888888888888888888888
Q ss_pred HHHHHHhh
Q 012101 447 ERIRAVMK 454 (471)
Q Consensus 447 ~~~~~~m~ 454 (471)
.+.++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.3e-07 Score=68.09 Aligned_cols=115 Identities=9% Similarity=-0.020 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGA 402 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~ 402 (471)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++. ...| +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3445555555556666666666666654321 123445555666666666666666666665 2223 45566777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
+...|++++|.+.+++..+..|.+...+..+..++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 777777777777777777777766666767766666544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=9e-07 Score=67.81 Aligned_cols=117 Identities=10% Similarity=-0.040 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGA 402 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~ 402 (471)
...+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|.+.++.. ...| +...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3445555566666777777777777765542 234556666777777777777777777776 3333 45677777788
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
+...|++++|...+++..+..|.++..+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888887777777777777776654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.9e-07 Score=66.78 Aligned_cols=99 Identities=13% Similarity=-0.027 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW--SDGAYVVLSNI 436 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 436 (471)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...+++..+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345556667777777777777777776 3333 5667777888888888888888888888888887 77778888888
Q ss_pred HHcC-CChHHHHHHHHHhhcCCCc
Q 012101 437 YASR-GLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 437 ~~~~-g~~~~A~~~~~~m~~~~~~ 459 (471)
|.+. |++++|.+.+++.......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 8888 8888888888888776554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-07 Score=82.02 Aligned_cols=51 Identities=6% Similarity=-0.072 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC-CChHHHHHHHHHhhcC
Q 012101 406 FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR-GLWEEVERIRAVMKHR 456 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 456 (471)
.|+.++|.+.+++..+..|.+......+...+.+. +.+++|.++|+.+.+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45666666666666666554443444444444444 5566666666666543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-07 Score=70.63 Aligned_cols=102 Identities=7% Similarity=-0.074 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
.+...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|...++++.+..|.+...+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44567888889999999999999999998 5555 677899999999999999999999999999999888899999999
Q ss_pred HHcCCChHHHHHHHHHhhcCCCcc
Q 012101 437 YASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
|.+.|++++|.+.+++..+.....
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCc
Confidence 999999999999999988765543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=72.91 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=77.4
Q ss_pred hcCChHHHHH---HHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhccCCcHH
Q 012101 271 KCGRMDLAYK---VFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRES----GIRP-NHVTFVGVLSACVHGGKVQ 342 (471)
Q Consensus 271 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~ 342 (471)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+. +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333222223345555555566666666666666555431 1111 2234555555666666666
Q ss_pred HHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHhC------CCCCC--HHHHHHHHHHHHhcCCH
Q 012101 343 EGKHFFEMMKNVYQIEP-R----FAHYGCMVDLLGRAGLLEEARAMVEGM------PMKAN--VVIWGCLMGACEKFGNV 409 (471)
Q Consensus 343 ~a~~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~p~--~~~~~~l~~~~~~~~~~ 409 (471)
+|...+++..+...-.+ + ...+..+...+...|++++|...+++. ...+. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666666544311111 1 223455556666666666666666554 01111 12345566666677777
Q ss_pred HHHHHHHHHHHhc
Q 012101 410 KMGEWVAKHLQEL 422 (471)
Q Consensus 410 ~~a~~~~~~~~~~ 422 (471)
++|...+++..+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=4e-07 Score=69.22 Aligned_cols=96 Identities=10% Similarity=-0.080 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR 440 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (471)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+..|.++..+..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667788899999999999988 5555 6778888889999999999999999999999998888999999999999
Q ss_pred CChHHHHHHHHHhhcCCC
Q 012101 441 GLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 441 g~~~~A~~~~~~m~~~~~ 458 (471)
|++++|++.+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.8e-07 Score=67.97 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...+++..+..|.++..+..++.+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333444444444444444444444 2222 33344444444444555555555555554444444444444444555555
Q ss_pred ChHHHHHHHHHhhcC
Q 012101 442 LWEEVERIRAVMKHR 456 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~ 456 (471)
++++|.+.+++..+.
T Consensus 87 ~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 87 RFEEAKRTYEEGLKH 101 (118)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHc
Confidence 555555555444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=67.35 Aligned_cols=94 Identities=9% Similarity=-0.095 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR 440 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (471)
.+..+...+.+.|++++|...|++. ...| +...|..+..++.+.|++++|...++++.+..|.++..|..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444445555555555555555555 2223 3455555555666666666666666666666655555566666666666
Q ss_pred CChHHHHHHHHHhhcC
Q 012101 441 GLWEEVERIRAVMKHR 456 (471)
Q Consensus 441 g~~~~A~~~~~~m~~~ 456 (471)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 6666666666555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.5e-07 Score=71.47 Aligned_cols=110 Identities=12% Similarity=-0.017 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 012101 324 NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWG 397 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 397 (471)
+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 445566666667777777777777777653 2454 455666666677777777777777665 3333 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 398 CLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
.+..++...|++++|...+++..+..|.++..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 666677777777777777777777766655555444444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-06 Score=67.17 Aligned_cols=104 Identities=5% Similarity=-0.084 Sum_probs=85.6
Q ss_pred CCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 012101 322 RPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGC 398 (471)
Q Consensus 322 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 398 (471)
.|+ ...+..+...+.+.|++++|...|+.+.... +.+...|..+..+|...|++++|.+.|++. .+.| +...|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 444 3456677778889999999999999998652 335678888999999999999999999998 5555 4678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
+..+|...|++++|...|+++.++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999988643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-06 Score=65.55 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467788889999999999999999998 3334 67789999999999999999999999999999988888999999999
Q ss_pred cCCChHHHHHHHHHhhcCCCc
Q 012101 439 SRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~ 459 (471)
..|++++|.+.++++.+....
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred HhcCHHHHHHHHHHHHHhCCC
Confidence 999999999999999876543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.6e-07 Score=74.46 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=54.4
Q ss_pred hcCChhhHHH---HhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHcCcCCHH
Q 012101 168 KAGDFEKARK---VFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKC----GFEP-DDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 168 ~~g~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~ 239 (471)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++.... |..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 433322222335555666666666666666666555431 1111 2234445555555666666
Q ss_pred HHHHHHHHHHHhhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 012101 240 LALQVHKYVFQVKSKQK----SDTLMLNSLIDMYGKCGRMDLAYKVFWEI 285 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (471)
+|...+++..+...... .....+..+...+...|++++|...+++.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666655522211111 01223444455555555555555554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.5e-07 Score=71.54 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 012101 324 NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMG 401 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~ 401 (471)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677788888999999999999999997652 336678888999999999999999999998 5555 5778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 402 ACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 402 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
++...|++++|...|++..++.|.+...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999998877554433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.4e-06 Score=66.27 Aligned_cols=99 Identities=10% Similarity=-0.107 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 012101 324 NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMG 401 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~ 401 (471)
+...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...+++. ...| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34445555555555555555555555554431 122344455555555555555555555554 2222 3345555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC
Q 012101 402 ACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 402 ~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
++...|++++|...++++.+..|
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHCh
Confidence 55555555555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=75.81 Aligned_cols=185 Identities=11% Similarity=-0.088 Sum_probs=94.7
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCCChhHHHHH-------HHHHHhcCChHHHHHHHHhcCC--CC---------------
Q 012101 234 SLGDLELALQVHKYVFQVKSKQKSDTLMLNSL-------IDMYGKCGRMDLAYKVFWEIDQ--PN--------------- 289 (471)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~~--------------- 289 (471)
..++.+.|.+.|.++ ..... .....|..+ ...+.+.++..++...+..-.. |+
T Consensus 18 ~~~d~~~A~~~F~~a--~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEI--TNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHH--HHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHH--HHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 567777788877777 43332 234455544 3444444444444444443332 10
Q ss_pred -------HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC--
Q 012101 290 -------VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-- 360 (471)
Q Consensus 290 -------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-- 360 (471)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccH
Confidence 011223445555666666666666665543 233323333334555666666666666544221 0 110
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM--PMK-AN--VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~-p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
...+..+..++...|++++|+..|++. +-. |. .........++.+.|+.++|...|+++....|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 124445555666666666666666665 211 32 224445555666666666666666666666664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.41 E-value=8.2e-06 Score=65.46 Aligned_cols=128 Identities=9% Similarity=-0.106 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
..|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 345666677777888888888888777653 3356677777777888888888888888876642 3345677778888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 371 LGRAGLLEEARAMVEGM-PMKA-NVVIW--GCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
+...|++++|.+.+++. ...| +...+ ......+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888887 3333 33444 3333447778888888888877654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=67.31 Aligned_cols=93 Identities=6% Similarity=-0.074 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHH
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG-------AYVVL 433 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l 433 (471)
.+..+...+.+.|++++|.+.|++. .+.| +...|..+..+|.+.|++++|+..+++..++.|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3455666666777777777777666 4444 4556667777777777777777777777766654432 45556
Q ss_pred HHHHHcCCChHHHHHHHHHhhc
Q 012101 434 SNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
+.+|...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6667777777777777776654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=69.13 Aligned_cols=103 Identities=10% Similarity=-0.097 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGA 402 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~ 402 (471)
...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|.+.|++. .+.| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3455566667778888888888888886542 235667777888888888888888888887 4444 55678888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCch
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSDGA 429 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 429 (471)
+...|++++|...|++..+..|.++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999888876654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.3e-06 Score=67.66 Aligned_cols=124 Identities=5% Similarity=-0.020 Sum_probs=85.9
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGA-CEKFGNV-- 409 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~-~~~~~~~-- 409 (471)
+...|++++|...++...+.. +.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 345677777777777776542 234567777777788888888888888777 3333 55566667777 6677777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 410 KMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 888888888888777777777778888888888888888888877765543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=8.8e-06 Score=60.79 Aligned_cols=109 Identities=9% Similarity=-0.026 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGAC 403 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~ 403 (471)
..+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344555556666677777777777665441 224556666666777777777777777766 3333 456777777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
...|++++|...+++..+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888888888888888777666555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-05 Score=63.20 Aligned_cols=99 Identities=13% Similarity=-0.066 Sum_probs=61.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 360 RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
+...+..+...+...|++++|.+.|++. ...|+ ...+..+..++...|++++|...+++..+..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3445555666666666666666666665 44554 455566666666666666666666666666665555666666
Q ss_pred HHHHcCCChHHHHHHHHHhhcCCC
Q 012101 435 NIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
.+|...|++++|.+.+++..+...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 666666666666666666655443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=3.8e-06 Score=70.06 Aligned_cols=96 Identities=10% Similarity=-0.100 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
..+..+..+|.+.|++++|...++.. ...| +...+..+..++...|++++|...|++..+..|.++..+..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56677778888888888888888887 4344 567888888999999999999999999999999888888888888888
Q ss_pred CCChHHHH-HHHHHhhcCC
Q 012101 440 RGLWEEVE-RIRAVMKHRN 457 (471)
Q Consensus 440 ~g~~~~A~-~~~~~m~~~~ 457 (471)
.++.+++. ..++.|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88777777 5566665443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00052 Score=61.74 Aligned_cols=179 Identities=11% Similarity=0.034 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcC-CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 012101 191 NAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLG-DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMY 269 (471)
Q Consensus 191 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (471)
+.+-....+.+..++|+++++++.... +-+...|+.--.++...+ .++++.++++.+ +... +.+..+|+--..++
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~--L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEF--AVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH--HHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHH--HHhC-CCcHHHHHHHHHHH
Confidence 333333445566678999999888763 334455665555555566 588899999888 5444 34566677666666
Q ss_pred Hhc-C-ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 270 GKC-G-RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLAN--------EALDCFHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 270 ~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
.+. + +++++..+++++.+ .|..+|+...-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 665 6 78888888888876 44556665555555545555 7888888887764 335666666666666
Q ss_pred cCCc-------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 012101 337 HGGK-------VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL 376 (471)
Q Consensus 337 ~~~~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
+.+. ++++.+.+++..... +-|...|+.+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 6554 566777776665541 2344456555555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.6e-06 Score=63.68 Aligned_cols=108 Identities=7% Similarity=-0.148 Sum_probs=70.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
.+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44455555666677777777777665541 234556666777777777777777777776 4344 4567777777888
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 012101 405 KFGNVKMGEWVAKHLQELE------PWSDGAYVVLSNI 436 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~ 436 (471)
..|++++|...+++..+.. |.++.....+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888887777 5554444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=4.7e-06 Score=63.65 Aligned_cols=100 Identities=13% Similarity=-0.007 Sum_probs=88.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012101 360 RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIY 437 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (471)
+...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|...+++..+..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456778888999999999999999998 3344 6778999999999999999999999999999998888999999999
Q ss_pred HcCCChHHHHHHHHHhhcCCCc
Q 012101 438 ASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+.|++++|.+.+++..+....
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc
Confidence 9999999999999998876543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.2e-06 Score=66.21 Aligned_cols=103 Identities=11% Similarity=-0.041 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
.+..+...+.+.|++++|...|+.+.... +.+...|..+..+|.+.|++++|...|++. ...| +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34445556677788888888888776542 234566777777888888888888888877 3344 4557777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHH
Q 012101 405 KFGNVKMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
..|++++|...|+++.+..|.++....
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 888888888888888888876665443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=7.3e-06 Score=65.92 Aligned_cols=96 Identities=11% Similarity=-0.040 Sum_probs=69.5
Q ss_pred CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012101 289 NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV 368 (471)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 368 (471)
+...|..+...+...|++++|+..|++..+.. +-+...+..+..+|...|++++|...|++..+.. +.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34566677777778888888888888877653 2356667777777788888888888888776542 23356677777
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 012101 369 DLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m 387 (471)
.+|...|++++|.+.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 7888888888888887776
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-05 Score=68.76 Aligned_cols=126 Identities=11% Similarity=-0.076 Sum_probs=60.1
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhccCCc
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN--HVTFVGVLSACVHGGK 340 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~ 340 (471)
+...+...|++++|.++|..+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++...|+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence 44445555666666666655543 322233344445555566666666555332211 110 1234444455555566
Q ss_pred HHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 012101 341 VQEGKHFFEMMKNVYQIEPR--FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN 392 (471)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 392 (471)
+++|+..|++.... ...|. .........++.+.|+.++|...|+++ ...|+
T Consensus 187 ~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 187 FTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66666666655321 11132 123334444555556666666666555 33444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.31 E-value=5.3e-06 Score=73.48 Aligned_cols=189 Identities=8% Similarity=-0.057 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHH
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMI 297 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 297 (471)
+...+..+...+.+.|++++|...|+.. +... +.+...+..+..+|.+.|++++|...+++..+ .+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRA--ITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3445556666667777777777777776 4332 22566677777777777777777777777665 3456677777
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 012101 298 VGYAANGLANEALDCFHYMRESGIRPNH-VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL 376 (471)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
.++...|++++|...|++..+.. |+. ..+...+.... ....+.. +...... ....+......+... ..|+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~-~~~~~~~i~~~l~~l--~~~~ 150 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSAL---RIAKKKR-WNSIEER-RIHQESELHSYLTRL--IAAE 150 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHH---HHHHHHH-HHHHHHT-CCCCCCHHHHHHHHH--HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHH---HHHHHHH-HHHHHHH-HHhhhHHHHHHHHHH--HHHH
Confidence 88888888888888888776542 211 01111111111 1111111 1222121 334444444433332 3688
Q ss_pred HHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhc-CCHHHHHHHHHHHHh
Q 012101 377 LEEARAMVEGM-PMKANVVIW-GCLMGACEKF-GNVKMGEWVAKHLQE 421 (471)
Q Consensus 377 ~~~A~~~~~~m-~~~p~~~~~-~~l~~~~~~~-~~~~~a~~~~~~~~~ 421 (471)
.++|.+.++.. ...|+.... ..+...+.+. +.++++.++|.++.+
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888888877 667765433 3333334444 668889999988765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.1e-06 Score=64.83 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=58.0
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNVYQIEPRF----AHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMG 401 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~ 401 (471)
+...+...|++++|...|+.+.+.. |+. ..+..+..++.+.|++++|...|++. ...|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3445566677777777777766542 222 25555666666777777777776666 32332 345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 402 ACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 402 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
++...|++++|...++++.+..|.++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 66677777777777777766666544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-05 Score=76.29 Aligned_cols=163 Identities=7% Similarity=-0.117 Sum_probs=108.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH----HHHHHHHHHhccCCcHHHHHHHHHHhHHhc---CCCCC-hhH
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESG-IRPNH----VTFVGVLSACVHGGKVQEGKHFFEMMKNVY---QIEPR-FAH 363 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~-~~~ 363 (471)
+..+...|...|++++|.+++.++.+.- ..++. .+.+.+-..+...|+.+.|.++++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556777777777777777777665421 11121 122223334456678888888877764321 22222 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCC----c
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-------PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELE---PWSD----G 428 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~ 428 (471)
+..+...|...|++++|..++++. ..++. ..++..++..|...|++++|..++++..... +.++ .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777888899999999999888876 22232 3478888899999999999999998887643 2221 2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
.+..++..+...|++++|.+.+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677778888999999887766643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00024 Score=66.93 Aligned_cols=164 Identities=8% Similarity=-0.079 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc--CCCC-ChhH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCG-FEPDD----VTMVSVTSACGSLGDLELALQVHKYVFQVKS--KQKS-DTLM 261 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~-~~~~ 261 (471)
+..+...|...|++++|.+.+......- ..++. ...+.+-..+...|+.+.+..+++....... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666777777777777666654321 01111 1222233334556777777777776632211 1111 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--------C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHc--CC-CC-C--HH
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ--------P-NVSSWTSMIVGYAANGLANEALDCFHYMRES--GI-RP-N--HV 326 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~-~p-~--~~ 326 (471)
+..+...|...|++++|..+++++.. + ...++..++..|...|++++|..++++.... .+ .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 66777888888888888877776532 1 1346777778888888888888888776532 11 11 1 23
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
.+..+...+...+++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455556667778888888777766644
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.26 E-value=8.3e-06 Score=77.71 Aligned_cols=143 Identities=13% Similarity=-0.042 Sum_probs=92.3
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
...|..+...+.+.|++++|...|++..+.. |+...+ . -+... +.. ......|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~----~~~-----~~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK----ASE-----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH----HHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH----HHH-----HHHHHHHHHHHH
Confidence 3456666677777777777777777766531 211000 0 00000 000 011356677778
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHH
Q 012101 370 LLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVE 447 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 447 (471)
+|.+.|++++|...+++. .+.| +...|..+..+|...|++++|...|+++.++.|.+...+..+..++.+.|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877 4444 56788888888888889999988888888888888888888888888888888776
Q ss_pred H-HHHHhh
Q 012101 448 R-IRAVMK 454 (471)
Q Consensus 448 ~-~~~~m~ 454 (471)
+ .++.|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 455553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.001 Score=59.76 Aligned_cols=180 Identities=10% Similarity=-0.048 Sum_probs=121.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF-ALEIGRQLHSLAVRLGLESNEFCESGFISLYS 167 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 167 (471)
++.+-....+.+..++|+++++.+.+.+. -+...|+.--..+...| .++++..+++.++... +.+..+|+.--..+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33444444555666789999999988642 23445666666666667 5899999999998754 556677777777776
Q ss_pred hc-C-ChhhHHHHhccCCCCCcc---hHHHHHHHHHcCCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 168 KA-G-DFEKARKVFDENPERKLG---SWNAIIAGLSQDGRAK--------EAIDMFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 168 ~~-g-~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
+. + +.++++++++++.+.+.. +|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 66 6 888999999888766554 5554444444444455 8888888888764 4567777777777766
Q ss_pred cCC-------HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 012101 235 LGD-------LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGR 274 (471)
Q Consensus 235 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 274 (471)
.++ ++++.+.+... +... +-|...|+-+-..+.+.|+
T Consensus 214 l~~~~~~~~~~~eELe~~~~a--I~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKS--IHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHhcCC
Confidence 665 56777777766 4433 3356666665555555554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-05 Score=59.58 Aligned_cols=101 Identities=13% Similarity=0.005 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA---NVVIWGCLM 400 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~l~ 400 (471)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 3445556666777788888888887776542 234566777777888888888888888877 3344 467788888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 012101 401 GACEKF-GNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 401 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 427 (471)
.++... |++++|.+.++++.+..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 899999999988888877553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-05 Score=71.98 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC----------------HhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN----------------VSSWTSMIVGYAANGLANEALDCFHYMRES 319 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 319 (471)
+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999988764 32 244445555555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 320 GIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
. +.+...+..+..+|...|++++|...|+++.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 1233444444444444444444444444444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=3.6e-06 Score=80.57 Aligned_cols=117 Identities=8% Similarity=0.020 Sum_probs=95.2
Q ss_pred HHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 012101 333 SACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~ 410 (471)
..+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.+++. .+.| +..++..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34567889999999999887652 234678888999999999999999999988 5555 5678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH--HHcCCChHHHHHHHH
Q 012101 411 MGEWVAKHLQELEPWSDGAYVVLSNI--YASRGLWEEVERIRA 451 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 451 (471)
+|.+.++++.+..|.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999888888888777 888899999999988
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6.2e-06 Score=63.01 Aligned_cols=108 Identities=6% Similarity=-0.031 Sum_probs=71.3
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC----CC----HHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMK----AN----VVIW 396 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~----p~----~~~~ 396 (471)
..+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++. ... ++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 455666667777778888888777776542 334556667777777777777777777776 221 22 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 397 GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
..+..++...|++++|...++++.+..| ++.....+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 7777777777777777777777777665 65444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-05 Score=61.21 Aligned_cols=98 Identities=13% Similarity=-0.078 Sum_probs=68.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
.+...+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+..|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34556666777777777777777777766 3333 456677777777777777777777777777777666677777777
Q ss_pred HHcCCChHHHHHHHHHhhcC
Q 012101 437 YASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~ 456 (471)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777766544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.2e-05 Score=58.97 Aligned_cols=90 Identities=13% Similarity=0.036 Sum_probs=49.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHH
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKANV----VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS---DGAYVVLSNIYA 438 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 438 (471)
+...+...|++++|.+.|+.. ...|+. ..+..+..++...|++++|...++++.+..|.+ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344555566666666666555 222221 245555555666666666666666666655555 334555556666
Q ss_pred cCCChHHHHHHHHHhhcC
Q 012101 439 SRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~ 456 (471)
+.|++++|.+.++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666655544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.14 E-value=7.7e-06 Score=74.56 Aligned_cols=152 Identities=10% Similarity=-0.058 Sum_probs=80.8
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345666677777788888888888887764 344331 223334433332221 126777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HcCCChHHH
Q 012101 370 LLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIY-ASRGLWEEV 446 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 446 (471)
+|.+.|++++|...+++. ...| +...|..+..+|...|++++|...|+++.++.|.++..+..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999888 4455 6778889999999999999999999999999988888887777773 455677888
Q ss_pred HHHHHHhhcCCCccC
Q 012101 447 ERIRAVMKHRNLAKI 461 (471)
Q Consensus 447 ~~~~~~m~~~~~~~~ 461 (471)
.+.|++|........
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 888988877655443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.14 E-value=1e-05 Score=63.47 Aligned_cols=62 Identities=8% Similarity=-0.122 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQEL-------EPWSDGAY----VVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.|..+..++.+.|++++|+..+++..++ +|.+...| ...+.++...|++++|++.|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666777777777777777777777777 77666666 77777777777777777777776543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.8e-06 Score=65.45 Aligned_cols=93 Identities=12% Similarity=0.003 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----Cc
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW--S----DG 428 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~ 428 (471)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++..+..+. + ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555555555555555554 1011 1335566666777777777777777776654211 1 12
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456677777778888888877776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.8e-06 Score=65.59 Aligned_cols=103 Identities=13% Similarity=-0.068 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcC----------------CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ----------------IEPRFAHYGCMVDLLGRAGLLEEARAMVEGM- 387 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 387 (471)
...+......+.+.|++++|...|........ -+.+...|..+..+|.+.|++++|...++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556666677778888888888887765310 0112245566666666777777777766666
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 388 PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 388 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
.+.| +...|..+..++...|++++|...|++..++.|.++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3344 455666666777777777777777777777766554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=62.82 Aligned_cols=132 Identities=9% Similarity=-0.023 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hh
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIR-PN----HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FA 362 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 362 (471)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555554432100 11 124555555666666777766666665432111111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|.+.+++..+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4556666777777777777777665 1111 13466777788888899999998888877653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-05 Score=61.79 Aligned_cols=109 Identities=8% Similarity=-0.031 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCC-CCC----hhHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQI-EPR----FAHYG 365 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~~~ 365 (471)
..|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.......- .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566666777777777777777766653 334555666666667777777777777766544211 111 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLM 400 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~ 400 (471)
.+...|...|++++|.+.|+.. ...|+......+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666777777777777777766 4445544444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-06 Score=64.58 Aligned_cols=91 Identities=9% Similarity=-0.039 Sum_probs=57.3
Q ss_pred CCcHHHHHHHHHHhHHhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQ-IEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEW 414 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 414 (471)
.|++++|+..|++..+... -+.+...+..+..+|...|++++|.+.|++. ...| +..++..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4677777777777764200 0123345666777777777777777777776 3334 45566777777777777777777
Q ss_pred HHHHHHhcCCCCCc
Q 012101 415 VAKHLQELEPWSDG 428 (471)
Q Consensus 415 ~~~~~~~~~~~~~~ 428 (471)
.+++..+..|.++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 77777777766554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=74.86 Aligned_cols=126 Identities=11% Similarity=-0.004 Sum_probs=96.1
Q ss_pred HhccCCcHHHHHHHHHHhHHhcC--C---CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQ--I---EP-RFAHYGCMVDLLGRAGLLEEARAMVEGM---------PMKANV-VIWG 397 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~--~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~ 397 (471)
.+...|++++|+.++++..+... + .| ...+++.|..+|...|++++|..++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888888877665421 1 12 2356888888999999999998888876 345554 4789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---hHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 398 CLMGACEKFGNVKMGEWVAKHLQE-----LEPWSDG---AYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.|...|...|++++|+.+++++.+ .|++.|. ....+..++...|.+++|+.++.++++.-..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998875 5776664 3456777888899999999999999875433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=6.1e-06 Score=68.76 Aligned_cols=149 Identities=9% Similarity=-0.026 Sum_probs=91.7
Q ss_pred hcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CC--------------HHHHHHHH
Q 012101 271 KCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIR-PN--------------HVTFVGVL 332 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~--------------~~~~~~ll 332 (471)
..|+++++.+.|+.-.+ .....+..+...+...|++++|...|++..+.... |+ ...+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 34555555555443222 23345666677777888888888888887764211 10 25677777
Q ss_pred HHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 012101 333 SACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~ 410 (471)
.+|...|++++|...++...+.. +.+...+..+..+|...|++++|.+.|++. .+.| +...+..+..++...++.+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 78888889999998888887652 345667778888888899999999888887 4445 4566777777777766666
Q ss_pred HHH-HHHHHHHh
Q 012101 411 MGE-WVAKHLQE 421 (471)
Q Consensus 411 ~a~-~~~~~~~~ 421 (471)
++. ..+..+..
T Consensus 174 ~~~~~~~~~~f~ 185 (198)
T 2fbn_A 174 KKDKLTFGGMFD 185 (198)
T ss_dssp C-----------
T ss_pred HHHHHHHHHHhc
Confidence 665 44444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.3e-05 Score=57.83 Aligned_cols=58 Identities=12% Similarity=-0.027 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|++.+++..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444431 1123344444444444444444444444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-05 Score=72.33 Aligned_cols=138 Identities=7% Similarity=-0.105 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
..+..+...+.+.|++++|...|++..+. .++.. .... .+...+. -+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~~--~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAKL--QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGGG--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHHH--HHHHHHHHHHHHHH
Confidence 45666777777788888888877776652 01000 0000 1111001 01234577888889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH
Q 012101 371 LGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
|.+.|++++|.+.+++. ...| +...|..+..+|...|++++|...++++.++.|.+...+..+..++.+.++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 6666 567889999999999999999999999999999888888888888888888887765
Q ss_pred H
Q 012101 449 I 449 (471)
Q Consensus 449 ~ 449 (471)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.5e-05 Score=59.11 Aligned_cols=96 Identities=8% Similarity=-0.058 Sum_probs=64.2
Q ss_pred HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 012101 329 VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF 406 (471)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~ 406 (471)
..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|...|++. .+.| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344455667777777777777776542 234556667777777778888887777776 4445 455777777788888
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 012101 407 GNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 407 ~~~~~a~~~~~~~~~~~~~~ 426 (471)
|++++|...++++.+..|.+
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 88888888888887777643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=72.36 Aligned_cols=126 Identities=9% Similarity=-0.128 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACE 404 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~ 404 (471)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 456677777888899999999999988654 354321 233444444444332 237888899999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCccee
Q 012101 405 KFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLA 467 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 467 (471)
+.|++++|...++++.+..|.+...|..++.+|...|++++|.+.|++..+...........+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L 304 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL 304 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999999889999999999999999999999999988766544444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=60.88 Aligned_cols=82 Identities=15% Similarity=0.057 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH
Q 012101 374 AGLLEEARAMVEGM-PM---KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 374 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
.|++++|...|++. .. .| +...+..+..+|...|++++|...++++.+..|.++..+..++.+|.+.|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555555554 33 13 223455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhhc
Q 012101 449 IRAVMKH 455 (471)
Q Consensus 449 ~~~~m~~ 455 (471)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0023 Score=57.23 Aligned_cols=80 Identities=8% Similarity=0.011 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCC-hhHHHH
Q 012101 238 LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG--RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGL-ANEALD 311 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~ 311 (471)
++++..+++.+ +... +.+..+|+--.-++.+.| .++++..+++++.+ .|..+|+.-.-.....|. ++++++
T Consensus 90 l~~EL~~~~~~--L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESC--LRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 34555555555 3322 234445554444444545 35666666665543 444555555555555555 366666
Q ss_pred HHHHHHHcC
Q 012101 312 CFHYMRESG 320 (471)
Q Consensus 312 ~~~~m~~~~ 320 (471)
.++++.+..
T Consensus 167 ~~~~~I~~~ 175 (331)
T 3dss_A 167 FTDSLITRN 175 (331)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
Confidence 666666653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=8.4e-05 Score=59.43 Aligned_cols=100 Identities=11% Similarity=-0.042 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHc--------CC--------CC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRES--------GI--------RP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
..+......+.+.|++++|...|.+.... .. .| +...|..+..+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555666666777777777777766553 00 11 124555566666677777777777776655
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 012101 354 VYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN 392 (471)
Q Consensus 354 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 392 (471)
.. +.+...|..+..+|...|++++|...|+.. .+.|+
T Consensus 92 ~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 92 RE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred cC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 41 233456666666777777777777777666 44554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.8e-06 Score=61.74 Aligned_cols=93 Identities=14% Similarity=-0.009 Sum_probs=66.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 012101 360 RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS------DGAYV 431 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 431 (471)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|...++++.+..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455666777777888888888888777 3344 56677788888888888888888888888888776 44556
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 012101 432 VLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~ 452 (471)
.+..++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 666666666666655554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.87 E-value=7.5e-05 Score=54.15 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
+...+..+..++...|++++|+..|+++.+..|.++..|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556777777777888888888888888887777777777788888888888888877777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00092 Score=65.19 Aligned_cols=169 Identities=8% Similarity=-0.044 Sum_probs=131.8
Q ss_pred ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC-
Q 012101 274 RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGL----------ANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG- 339 (471)
Q Consensus 274 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~- 339 (471)
..++|.+.++++.. .+..+|+.--.++...|+ ++++++.++++.+.. +-+...|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567888877764 344667766666666666 899999999998864 335667777777777788
Q ss_pred -cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 012101 340 -KVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG-LLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF--------- 406 (471)
Q Consensus 340 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~--------- 406 (471)
+++++.+.++++.+.. +-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 6799999999998763 346677877777778888 899999999998 6666 677888887777663
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 012101 407 -----GNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEE 445 (471)
Q Consensus 407 -----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (471)
+.++++.+.++++....|.+.+.|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999998887554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.85 E-value=2.7e-05 Score=74.12 Aligned_cols=100 Identities=7% Similarity=-0.112 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----------------VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
.+..+...|.+.|++++|...|++. .+.|+ ...|..+..+|.+.|++++|+..++++.++.|.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4445555555666666666666555 22221 578888999999999999999999999999999
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCC
Q 012101 426 SDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIP 462 (471)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 462 (471)
+...|..++.+|...|++++|...|++..+.......
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999987665443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0034 Score=56.13 Aligned_cols=181 Identities=11% Similarity=-0.005 Sum_probs=128.3
Q ss_pred hHHHHHHHHhcCC---CCHhhHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc-HHHHHHHH
Q 012101 275 MDLAYKVFWEIDQ---PNVSSWTSMIVGYAANG--LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK-VQEGKHFF 348 (471)
Q Consensus 275 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 348 (471)
++++..+++.+.. .+..+|+.-.-.+.+.+ .+++++.+++++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777654 56778888777777777 4899999999999875 3366666665555666677 58999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 012101 349 EMMKNVYQIEPRFAHYGCMVDLLGRA--------------GLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF------ 406 (471)
Q Consensus 349 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~------ 406 (471)
+.+.+.. +-|...|+.....+.+. +.++++++.+... ...| |...|+.+-..+.+.
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998763 34555666555555444 4578888888887 4455 677787666665554
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHH---HHHcCCChHHHHHHHHHhhcCCC
Q 012101 407 -----GNVKMGEWVAKHLQELEPWSDGAYVVLSN---IYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 407 -----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
+.++++++.++++.+..|++.-.+..++. .....|..+++...+.++.+-++
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 45789999999999999977433332222 22356788899999999887554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00014 Score=69.54 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=39.0
Q ss_pred HHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChh
Q 012101 231 ACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLAN 307 (471)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 307 (471)
.+.+.|++++|.+.+++. ++.. +.+...+..+..+|.+.|++++|...+++..+ .+...|..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~A--l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQA--IELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHH--HHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344555666666666555 3321 12344444445555555555555544444332 22334444444444444444
Q ss_pred HHHHHHHHHHH
Q 012101 308 EALDCFHYMRE 318 (471)
Q Consensus 308 ~a~~~~~~m~~ 318 (471)
+|.+.+++..+
T Consensus 92 eA~~~~~~al~ 102 (477)
T 1wao_1 92 AALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0001 Score=54.90 Aligned_cols=80 Identities=9% Similarity=-0.045 Sum_probs=53.5
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012101 343 EGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQ 420 (471)
Q Consensus 343 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 420 (471)
.|...|++..+.. +.+...+..+...|...|++++|...|++. ...| +...|..+..++...|++++|...+++..
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666665431 234556667777777777777777777776 3334 45567777777777777777777777777
Q ss_pred hcCC
Q 012101 421 ELEP 424 (471)
Q Consensus 421 ~~~~ 424 (471)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00015 Score=51.07 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...+++..+..|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666677777777777777766 3333 45667777777778888888888888887777777667776666665
Q ss_pred cC
Q 012101 439 SR 440 (471)
Q Consensus 439 ~~ 440 (471)
+.
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00013 Score=57.19 Aligned_cols=69 Identities=13% Similarity=0.055 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC-------CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PM-------KANV-VIW----GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA 429 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-------~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 429 (471)
.|..+..++.+.|++++|+..+++. .+ .|+. ..| .....++...|++++|+..|++..++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777888888888887777776 44 8865 477 889999999999999999999999998876654
Q ss_pred HH
Q 012101 430 YV 431 (471)
Q Consensus 430 ~~ 431 (471)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00012 Score=67.49 Aligned_cols=116 Identities=4% Similarity=-0.096 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKA-NVVIWGCLMGAC 403 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~l~~~~ 403 (471)
...+..+...+.+.|++++|.+.|++..+.. +... .....+++. ...| +..+|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777775421 1100 000111111 1233 456888899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+.|++++|+..++++.+..|.+...+..++.+|.+.|++++|++.|++..+....
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988889999999999999999999999999876543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00025 Score=52.16 Aligned_cols=70 Identities=9% Similarity=-0.071 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 391 ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 391 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
++...+..+...+...|++++|...+++..+..|.++..+..++.+|.+.|++++|++.+++..+.....
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3566788899999999999999999999999999999999999999999999999999999998876543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00048 Score=48.90 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 391 ANVVIWGCLMGACEKFGN---VKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 391 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.|...+..+..++...++ .++|..++++..+.+|.++.....++..+.+.|++++|...|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466777777777765554 699999999999999999999999999999999999999999999988766
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00091 Score=51.68 Aligned_cols=89 Identities=4% Similarity=-0.172 Sum_probs=43.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc---
Q 012101 367 MVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS--- 439 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 439 (471)
+...|...+..++|.+.|++.-..-+...+..|...|.. .+|+++|...|++..+.+ ++..+..|..+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCC
Confidence 333344444444444444444111234444444444444 455555555555555543 23345555555555
Q ss_pred -CCChHHHHHHHHHhhcCC
Q 012101 440 -RGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 440 -~g~~~~A~~~~~~m~~~~ 457 (471)
.+++++|.+++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 555566666655555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=4.6e-05 Score=59.66 Aligned_cols=87 Identities=11% Similarity=-0.013 Sum_probs=53.4
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH----------HHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL----------EEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
+.+.+++|.+.++...+.. +.+...|..+..++...+++ ++|...|++. .+.| +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3456677777777776542 23455666666666666553 4666666666 5555 3446666666666
Q ss_pred hcC-----------CHHHHHHHHHHHHhcCCC
Q 012101 405 KFG-----------NVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 405 ~~~-----------~~~~a~~~~~~~~~~~~~ 425 (471)
..| ++++|++.|+++.+++|.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 553 666777777777666664
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00046 Score=65.69 Aligned_cols=122 Identities=13% Similarity=0.029 Sum_probs=81.0
Q ss_pred HHhCCChhHHHHHHHHHHHc---CC---CCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHh----cCC-CCC-hhHHHH
Q 012101 300 YAANGLANEALDCFHYMRES---GI---RPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNV----YQI-EPR-FAHYGC 366 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~---~~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~-~~~~~~ 366 (471)
+...|++++|+.++++..+. -+ .|+ ..+++.|..+|...|++++|..++++..+. +|- .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566677777666665432 11 222 346777777777778888777777765432 121 232 346777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 367 MVDLLGRAGLLEEARAMVEGM---------PMKANVV-IWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
|...|...|++++|+.++++. ...|+.. +.+.+-.++...+.+++|+.++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887776 3345443 556666788888999999999988876
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.001 Score=64.88 Aligned_cols=157 Identities=10% Similarity=0.019 Sum_probs=121.4
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCc----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 012101 304 GLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGK----------VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLG 372 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 372 (471)
...++|++.++++.+. .|+ ...|+.--.++...|+ ++++.+.++.+.+.. +-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3456889999999986 454 3445444344444445 899999999998763 345667877777888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC-------
Q 012101 373 RAG--LLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG-NVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR------- 440 (471)
Q Consensus 373 ~~g--~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 440 (471)
+.| +++++++.++++ ...| |..+|+.-..+..+.| .++++.+.++++.+.+|.+.++|.....++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 888 779999999999 4444 7889998888888999 899999999999999999999999888877653
Q ss_pred -------CChHHHHHHHHHhhcCCCccCCCc
Q 012101 441 -------GLWEEVERIRAVMKHRNLAKIPAY 464 (471)
Q Consensus 441 -------g~~~~A~~~~~~m~~~~~~~~~~~ 464 (471)
+.++++.+.+++....++.....|
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW 229 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAW 229 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 567999999998887766544433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00051 Score=48.25 Aligned_cols=68 Identities=21% Similarity=0.180 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+...+..+...+...|++++|...+++..+..|.++..+..++.+|.+.|++++|.+.+++..+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34578888899999999999999999999999988889999999999999999999999998876543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0004 Score=65.02 Aligned_cols=82 Identities=11% Similarity=0.006 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---hHHHHHH
Q 012101 374 AGLLEEARAMVEGM---------PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQE-----LEPWSDG---AYVVLSN 435 (471)
Q Consensus 374 ~g~~~~A~~~~~~m---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~ 435 (471)
.|++++|+.++++. ...|+. .+++.+..+|...|++++|+.+++++.+ .|+.+|. +++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666665543 223433 4677777778888888888877777764 3555543 5667777
Q ss_pred HHHcCCChHHHHHHHHHhhc
Q 012101 436 IYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~ 455 (471)
+|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 78888888888877776643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0044 Score=47.72 Aligned_cols=112 Identities=9% Similarity=-0.155 Sum_probs=91.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 012101 304 GLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR----AGLLEE 379 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 379 (471)
+++++|.+.|++..+.| .|+.. +-..|...+.+++|.+.|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 44444 666777778889999999999764 456677788888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 012101 380 ARAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 380 A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 424 (471)
|.++|++.-..-+...+..|...|.. .+|+++|...+++..+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998223477888888888888 8999999999999988774
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00096 Score=62.51 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=50.3
Q ss_pred HHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---hHHH
Q 012101 371 LGRAGLLEEARAMVEGM---------PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQE-----LEPWSDG---AYVV 432 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~ 432 (471)
+.+.|++++|++++++. ...|+ ..+++.+..+|...|++++|+.+++++.+ .++.+|. +++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556666666665544 11222 23666667777777777777777766654 3444443 4556
Q ss_pred HHHHHHcCCChHHHHHHHHHhh
Q 012101 433 LSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
|+.+|...|++++|+.++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6667777777777777666654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00063 Score=48.81 Aligned_cols=80 Identities=15% Similarity=0.053 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKA-NVV-IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
....+.+.|++++|.+.+++. ...| +.. .+..+..++...|++++|...|+++.+..|.++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 445677788888888888887 4444 456 78888888889999999999999999988877765522 445
Q ss_pred HHHHHHHHHhh
Q 012101 444 EEVERIRAVMK 454 (471)
Q Consensus 444 ~~A~~~~~~m~ 454 (471)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00044 Score=54.09 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=52.4
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 012101 373 RAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV----------KMGEWVAKHLQELEPWSDGAYVVLSNIYASR 440 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (471)
+.+.+++|.+.++.. ...| +...|..+..++...+++ ++|+..|++..+++|....+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666665 3344 445666566666655543 4666666776666666666666666666655
Q ss_pred C-----------ChHHHHHHHHHhhcCCC
Q 012101 441 G-----------LWEEVERIRAVMKHRNL 458 (471)
Q Consensus 441 g-----------~~~~A~~~~~~m~~~~~ 458 (471)
| ++++|++.|++..+.++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 3 66667776666665443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00067 Score=48.67 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=56.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSDG-AYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
....+...|++++|...++++.+..|.++. .+..++.+|...|++++|.+.|++..+.+....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 456788999999999999999999998888 999999999999999999999999988766543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.031 Score=41.60 Aligned_cols=140 Identities=7% Similarity=0.001 Sum_probs=95.2
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.-.|..++..++..+.... .+..-||.+|.-....-+-+-..++++.+-+-+.+. .+|+....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 4467788888888877764 356667777765555556666666666664433221 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 381 RAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 381 ~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
..-+-.++ .+....+..+......|+-++-.+++..+....+.++.....+..+|.+.|+..+|.+++++.-+.|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444443 245566667777888888888888888876666667778888888888888888888888888888874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0016 Score=48.20 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFW 283 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~ 283 (471)
.+..+...|...|++++|...|+
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~ 43 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLR 43 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHH
Confidence 33333333333444444433333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0052 Score=57.45 Aligned_cols=92 Identities=15% Similarity=-0.032 Sum_probs=68.0
Q ss_pred cCCcHHHHHHHHHHhHHhcC--CC---CC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQ--IE---PR-FAHYGCMVDLLGRAGLLEEARAMVEGM---------PMKANV-VIWGCLM 400 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~l~ 400 (471)
..|++++|..++++..+... +. |+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34678888888777654321 11 22 356788888899999999988888876 345654 4799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCCc
Q 012101 401 GACEKFGNVKMGEWVAKHLQE-----LEPWSDG 428 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~ 428 (471)
..|...|++++|+.+++++.+ .|+++|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999998875 4666653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0032 Score=45.28 Aligned_cols=60 Identities=10% Similarity=0.006 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
.|..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444444432 1123334444444444444444444444443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00047 Score=63.39 Aligned_cols=237 Identities=8% Similarity=0.069 Sum_probs=150.9
Q ss_pred ChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 012101 49 DPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVL 128 (471)
Q Consensus 49 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 128 (471)
.+. +|..|-.+..+ .+.+.+|+.-|-+. .|...|..+|.+..+.|.+++-+..+.-.++.. -++..=+.|+
T Consensus 53 ~p~-VWs~LgkAqL~---~~~v~eAIdsyIkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 53 EPA-VWSQLAKAQLQ---KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCC-CSSSHHHHTTT---SSSCTTTTTSSCCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred Ccc-HHHHHHHHHHc---cCchHHHHHHHHhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 355 88888888877 56677777666444 345568889999999999988888877666543 3445556788
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC------------------------C
Q 012101 129 KASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP------------------------E 184 (471)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~------------------------~ 184 (471)
-+|++.++..+.++++. .|+..-...+.+-|...|.++.|.-+|..+. .
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888766554442 4666666667777777888888877776643 1
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHH
Q 012101 185 RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNS 264 (471)
Q Consensus 185 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 264 (471)
.++.+|..+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|-+++...+++.- .. --.....+|+-
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEag--lg-lErAHmGmFTE 268 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAA--LG-LERAHMGMFTE 268 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHH--TT-STTCCHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHH--hC-CCchhHHHHHH
Confidence 3566899999999988888777554443332 222 1223455566777777777776655 31 12234556666
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC-----------CCHhhHHHHHHHHHhCCChhHHH
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQ-----------PNVSSWTSMIVGYAANGLANEAL 310 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~ 310 (471)
|.-.|++- ++++..+-++.... .....|.-++-.|.+..++|.|.
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 66666653 34444443333221 23445666666677666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.009 Score=55.89 Aligned_cols=98 Identities=11% Similarity=-0.095 Sum_probs=72.9
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HH
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQ--IEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM---------PMKANV-VI 395 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~ 395 (471)
+..+...|++++|+.++++..+... +.|+ ..+++.+..+|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445567888888888887764311 1222 356788888899999999999888876 345544 47
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHLQE-----LEPWSDGA 429 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 429 (471)
++.|...|...|++++|+.+++++.+ .|+++|.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 89999999999999999999998875 47766643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.044 Score=49.29 Aligned_cols=69 Identities=12% Similarity=-0.057 Sum_probs=45.9
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 358 EPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
+.+...|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.++++..++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 445556666666566667777777777776 444666666666666777777777777777777777644
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.29 Score=47.76 Aligned_cols=115 Identities=10% Similarity=-0.050 Sum_probs=70.2
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 304 GLANEALDCFHYMRESG-IRPNHV--TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.+.+.|...+....... ..+... ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37789999998886543 222222 2223333444555355566666655332 24444444455555677999999
Q ss_pred HHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 381 RAMVEGMPMKA-N-VVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 381 ~~~~~~m~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
...|+.|+..+ + ..-.-=+..+....|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999994332 2 22222244567788999999999998875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.009 Score=53.75 Aligned_cols=78 Identities=14% Similarity=0.061 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceeec
Q 012101 390 KANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATR 469 (471)
Q Consensus 390 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 469 (471)
..+..+|..+...+...|++++|...++++..+++ +...|..++..+.-.|++++|.+.+++....++.. +.+.|.+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~-~t~~~~~~ 351 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA-NTLYWIEN 351 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH-HHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-ChHHHHhC
Confidence 45778888888888888999999999999999985 44567788999999999999999999988876654 35665544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.025 Score=57.86 Aligned_cols=190 Identities=16% Similarity=0.063 Sum_probs=107.6
Q ss_pred HHHHhcCChhhHHH-HhccCC-CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHH
Q 012101 164 SLYSKAGDFEKARK-VFDENP-ERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELA 241 (471)
Q Consensus 164 ~~~~~~g~~~~a~~-~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 241 (471)
......+++++|.+ ++..++ .. ....++..+.+.|.+++|+++.+. | ..- .......|+++.|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~~~---~~~~~~~~l~~~~~~~~a~~~~~~-------~-~~~----f~~~l~~~~~~~A 671 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEGKD---SLTKIARFLEGQEYYEEALNISPD-------Q-DQK----FELALKVGQLTLA 671 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCCHH---HHHHHHHHHHHTTCHHHHHHHCCC-------H-HHH----HHHHHHHTCHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCCchH---HHHHHHHHHHhCCChHHheecCCC-------c-chh----eehhhhcCCHHHH
Confidence 33445788888888 665544 22 226677777788888888776531 1 111 2233456888888
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 012101 242 LQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGI 321 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 321 (471)
.++.+.+ .+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...
T Consensus 672 ~~~~~~~--------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~----------- 727 (814)
T 3mkq_A 672 RDLLTDE--------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLV----------- 727 (814)
T ss_dssp HHHHTTC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHH-----------
T ss_pred HHHHHhh--------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHH-----------
Confidence 8875433 2566788888888888888888887766543 122222233334333333
Q ss_pred CCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HHHH
Q 012101 322 RPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANV----VIWG 397 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~~~~ 397 (471)
.+.......|+++.|...+-... -+...++.|.+.+++++|..+-+..+ |.. ....
T Consensus 728 --------~~~~~a~~~~~~~~A~~~~~~~g----------~~~~a~~~~~~~~~~~~A~~lA~~~~--~~~~~i~~~~~ 787 (814)
T 3mkq_A 728 --------TLAKDAETTGKFNLAFNAYWIAG----------DIQGAKDLLIKSQRFSEAAFLGSTYG--LGDNEVNDIVT 787 (814)
T ss_dssp --------HHHHHHHHTTCHHHHHHHHHHHT----------CHHHHHHHHHHTTCHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred --------HHHHHHHHcCchHHHHHHHHHcC----------CHHHHHHHHHHcCChHHHHHHHHHhC--CChHHHHHHHH
Confidence 33444444555555555554431 12345556666677777777766653 222 2333
Q ss_pred HHHHHHHhcCCHHHH
Q 012101 398 CLMGACEKFGNVKMG 412 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a 412 (471)
.....+...|+.+.|
T Consensus 788 ~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 788 KWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHTTTCHHHH
T ss_pred HHHHHHHhccchhHH
Confidence 333444455554433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.022 Score=58.40 Aligned_cols=26 Identities=8% Similarity=-0.098 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
..|..+...+.+.|+++.|.+.|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44555555555555555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0094 Score=51.38 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=59.2
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHcC-CChHH
Q 012101 377 LEEARAMVEGM-PMKAN---VVIWGCLMGACEKF-----GNVKMGEWVAKHLQELEPWS-DGAYVVLSNIYASR-GLWEE 445 (471)
Q Consensus 377 ~~~A~~~~~~m-~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 445 (471)
...|...+++. .+.|+ ...|..+...|.+. |+.++|.+.|++..+++|.. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 55565 44666666667663 77777777777777777753 66777777777764 77777
Q ss_pred HHHHHHHhhcCCCccCCCc
Q 012101 446 VERIRAVMKHRNLAKIPAY 464 (471)
Q Consensus 446 A~~~~~~m~~~~~~~~~~~ 464 (471)
|.+.+++....++...|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 7777777777766654543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.032 Score=39.31 Aligned_cols=67 Identities=7% Similarity=-0.129 Sum_probs=50.0
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 359 PRFAHYGCMVDLLGRAGL---LEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
.+...+..+..++...++ .++|..++++. ...| +......+...+.+.|++++|...|+++.+..|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666667776654444 67888888887 5555 5567777788888899999999999998888876
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.014 Score=45.08 Aligned_cols=88 Identities=11% Similarity=-0.022 Sum_probs=66.2
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG---LLEEARAMVEGM-PMK-A--NVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~l~~~~~~~~~~~~ 411 (471)
+....+++.|.+.... + .++..+.-.+..++++.+ +.+++..+|+.. ... | +...+-.+.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 4566777777776553 3 367777777888888888 566888888888 333 5 34566667778899999999
Q ss_pred HHHHHHHHHhcCCCCCc
Q 012101 412 GEWVAKHLQELEPWSDG 428 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~ 428 (471)
|.+.++.+.+.+|.+..
T Consensus 90 A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCCCCHH
Confidence 99999999999997754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.28 Score=38.82 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=50.3
Q ss_pred HHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHH
Q 012101 269 YGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
..+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34555666665555544 3445566666666666666666666554331 222222333345544444443
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012101 349 EMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPM 389 (471)
Q Consensus 349 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (471)
+....+ | -++.....+...|+++++.++|.+.+.
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 333221 1 133344445556666666666655543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.041 Score=39.69 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-----P----MKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
.-+-.|...+.+.|+++.|...|+.. . -.+....+..+..++.+.|+++.|...++++.+..|.++.+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34445666666666666666666654 1 1234567888888888999999999999988888887765433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.042 Score=42.43 Aligned_cols=84 Identities=13% Similarity=0.020 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHH
Q 012101 306 ANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG---KVQEGKHFFEMMKNVYQIEP--RFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 380 (471)
...+.+.|.+....|. ++..+...+..++++.+ +++++..++++..+. . .| ....+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666655553 56666666666777776 566788888877665 2 24 234444566677888888888
Q ss_pred HHHHHhC-CCCCC
Q 012101 381 RAMVEGM-PMKAN 392 (471)
Q Consensus 381 ~~~~~~m-~~~p~ 392 (471)
.+.++.+ .+.|+
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 8888877 55663
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.052 Score=39.14 Aligned_cols=68 Identities=7% Similarity=-0.193 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELE-------PWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+..-+..+...+.+.|++..|...++.+.+.. +....++..|+.+|.+.|++++|...+++..+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 45566778899999999999999999987743 223347889999999999999999999999875443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.71 Score=36.57 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=60.8
Q ss_pred HHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHH
Q 012101 164 SLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQ 243 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 243 (471)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777766555 2344677777777777777777777766542 2334444444566655555
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC
Q 012101 244 VHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ 287 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 287 (471)
+-+.. ...| -++.....+.-.|+++++.++|.+..+
T Consensus 82 la~iA--~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIA--QTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHH--HHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHH--HHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 44443 2232 134444555566777777766655543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.52 Score=40.71 Aligned_cols=115 Identities=13% Similarity=-0.003 Sum_probs=55.1
Q ss_pred hcCChhhHHHHhccCCCCCcc--hHHHHHHH-HHcC--CC------hhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHc
Q 012101 168 KAGDFEKARKVFDENPERKLG--SWNAIIAG-LSQD--GR------AKEAIDMFIGLKKCGFEPD---DVTMVSVTSACG 233 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~~~~--~~~~li~~-~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~ 233 (471)
+.++..+..+.+.+....++. .|..++.+ +... |+ ...|...+++..+. .|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHH
Confidence 344445555666666554544 35554442 2222 22 34455555555544 343 345555555555
Q ss_pred Cc-----CCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhcC
Q 012101 234 SL-----GDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKC-GRMDLAYKVFWEID 286 (471)
Q Consensus 234 ~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 286 (471)
+. |+.++|.+.|++. +..+..-+..++....+.++.. |+.+.+.+.+++..
T Consensus 211 ~vPp~~gGd~ekA~~~ferA--L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHL--TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHH--HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHH--HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 52 5666666666665 3333222233444444444442 55555555554443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0017 Score=59.83 Aligned_cols=237 Identities=11% Similarity=0.092 Sum_probs=159.0
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 155 NEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
.+.+|+.|..+....+.+.+|.+.| ++..|+..|..+|....+.|.+++-+.++...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4456777888888878777777666 334566678888888888888888888887766553333 333567778888
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC------------------------CCH
Q 012101 235 LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ------------------------PNV 290 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~ 290 (471)
.++..+.+++ -..||..-...+.+-|...|.++.|.-+|..+.. .++
T Consensus 129 ~~rL~elEef---------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 129 TNRLAELEEF---------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp SCSSSTTTST---------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred hCcHHHHHHH---------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 8876543332 1235555566778888888888888877776652 567
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCC-CCChhHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQI-EPRFAHYGCMVD 369 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~ 369 (471)
.||..+-.+|...+.+.-|.-.--.+.- .||. ...++..|-..|.+++-+.+++.-. |+ .....+|+-|.-
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaI 271 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAI 271 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHH
Confidence 8999998999999888777665544442 2332 3345667888888888888888765 33 244566777777
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 012101 370 LLGRAGLLEEARAMVEGM----PMKA------NVVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m----~~~p------~~~~~~~l~~~~~~~~~~~~a~ 413 (471)
.|++- ++++..+.++-. .++. ....|.-++-.|.+-.+++.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 77665 566666665554 2221 2234677777777777777653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.076 Score=40.46 Aligned_cols=105 Identities=11% Similarity=-0.016 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHhccCCcH------HHHHHHHHHhHHhcCCCCChh-HHHHHHH------HHHhcCCHHHHHHHHHhC---
Q 012101 324 NHVTFVGVLSACVHGGKV------QEGKHFFEMMKNVYQIEPRFA-HYGCMVD------LLGRAGLLEEARAMVEGM--- 387 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~li~------~~~~~g~~~~A~~~~~~m--- 387 (471)
|..+|-..+...-+.|+. ++.+++|++... .++|+.. .|...|. .+...+++++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445555555555555666 666667766654 3344321 1222221 112345666666666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 012101 388 PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 388 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
..+- ...|-...+.-.+.|+++.|.+++.+...++|.+.....
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 1111 455555555556666666666666666666665544333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.42 Score=35.43 Aligned_cols=88 Identities=13% Similarity=-0.021 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 012101 341 VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEE---ARAMVEGM-PMK-A--NVVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~l~~~~~~~~~~~~a~ 413 (471)
...+.+.|...... |. ++..+--.+..++.+..+..+ +..+++.. ... | .....-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444555544332 22 555555556666666665555 66666665 222 4 2234555667888889999999
Q ss_pred HHHHHHHhcCCCCCchH
Q 012101 414 WVAKHLQELEPWSDGAY 430 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (471)
+.++.+.+..|.+..+.
T Consensus 95 ~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhCCCCHHHH
Confidence 99999988888776443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.3 Score=48.68 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=49.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 400 MGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
...|...|+++.|+.+.++....-|..-.+|..|+.+|.+.|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556788999999999999999999888899999999999999999999999986
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.57 E-value=1.7 Score=32.49 Aligned_cols=63 Identities=6% Similarity=-0.038 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCC
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQI 357 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (471)
....+......|+-|+-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++.+. |+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 34455566666776766666666433 23556666666667777777777777777766554 44
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.44 E-value=1.3 Score=33.77 Aligned_cols=101 Identities=12% Similarity=0.205 Sum_probs=66.1
Q ss_pred CCHhhHHHHHHHHHhCCCh------hHHHHHHHHHHHcCCCCCHHH----HHHHHH---HhccCCcHHHHHHHHHHhHHh
Q 012101 288 PNVSSWTSMIVGYAANGLA------NEALDCFHYMRESGIRPNHVT----FVGVLS---ACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~----~~~ll~---~~~~~~~~~~a~~~~~~~~~~ 354 (471)
.|..+|-..+...-+.|++ ++..++|++.... ++|+... |..+.- .+...+++++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5666777777777777877 7777888877765 5665321 111110 112337888899999888664
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 012101 355 YQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA 391 (471)
Q Consensus 355 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 391 (471)
.-.- ...|....+.-.+.|+..+|.+++.+. |..|
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 2222 666766667677899999999998887 4444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.08 E-value=0.065 Score=39.75 Aligned_cols=86 Identities=6% Similarity=-0.204 Sum_probs=62.5
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHcCCChHHHHH
Q 012101 376 LLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKM---GEWVAKHLQELE-P-WSDGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 376 ~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
....+.+-+.+. .-.|+..+--.+.+++.++.+... ++.+++.+.+.+ | ........|+-++.+.|++++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444 124778887888889998887665 888888888765 3 223466688889999999999999
Q ss_pred HHHHhhcCCCccC
Q 012101 449 IRAVMKHRNLAKI 461 (471)
Q Consensus 449 ~~~~m~~~~~~~~ 461 (471)
.++.+.+..+...
T Consensus 96 ~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 96 YVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHHhCCCCH
Confidence 9999988665443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.53 E-value=6.8 Score=36.56 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhh--cCCCCC--hh
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD-----DVTMVSVTSACGSLGDLELALQVHKYVFQVK--SKQKSD--TL 260 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~ 260 (471)
...|...+...|++.+|.+++..+...-...+ ...+...+..|...+++.+|..++..+.... ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 35577778888888888888888764311111 1345556667777778877777777652111 111121 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEI 285 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (471)
.+...+..+...+++.+|.+.|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4455556666666666666655444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.63 E-value=6.5 Score=34.44 Aligned_cols=170 Identities=8% Similarity=0.041 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHH----HHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 159 ESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAID----MFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-+ +++...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44566667888899999888633 2334566677666555 45666677889999888888888755
Q ss_pred cCCH-HHHHHHHHHHHH--hhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhC---CCh
Q 012101 235 LGDL-ELALQVHKYVFQ--VKSK--QKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAAN---GLA 306 (471)
Q Consensus 235 ~~~~-~~a~~~~~~~~~--~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~~ 306 (471)
...- ..-.++.+.+.. .+.| ..-++.....+...|.+.|++.+|+.-|-.-...|...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 3211 111233333310 2222 2346778889999999999999999877633323445554444333332 222
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHh
Q 012101 307 NEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 307 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
.++ +...-..++. |...++...|..+++...+.
T Consensus 185 ~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 221 2222233333 34568899999888877644
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.98 Score=35.18 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=23.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.-..+..+|.+.|++++|+.+++.+..+
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 4456888999999999999999987543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.45 E-value=6 Score=36.93 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHHHhhc-----CCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 012101 235 LGDLELALQVHKYVFQVKS-----KQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEI 285 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (471)
.++++.|.+.+..+ .+. +......+...++..|...|+++...+.+.-+
T Consensus 29 ~~~~~~a~e~ll~l--EK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L 82 (445)
T 4b4t_P 29 QNDCNSALDQLLVL--EKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL 82 (445)
T ss_dssp HHHHHHHHHHHHHH--HHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH--HHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 36777787777666 332 23444566777777888888887766555443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.51 E-value=2.9 Score=31.60 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=45.5
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 358 EPRFAHYGCMVDLLGRAGLLE---EARAMVEGM-PMKA-N-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.|+..+--.+..++.+..+.+ ++..+++.. ...| + ....-.|.-++.+.|++++|.++.+.+.+..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 456655555666676666544 466666666 2233 2 234445556788888888888888888888886643
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.16 E-value=18 Score=37.03 Aligned_cols=253 Identities=10% Similarity=-0.005 Sum_probs=131.6
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHcCcCCHHHHHHHHHHHHHhhcCC-------CCChhHHHHH
Q 012101 195 AGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMV--SVTSACGSLGDLELALQVHKYVFQVKSKQ-------KSDTLMLNSL 265 (471)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~l 265 (471)
-+....|+.++++.++......+-..+...-. .+.-+....|....+..++... +...- .+....-.++
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~--L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNI--IVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHH--HHHHSSCCSCHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHH--HcCccccccccccHHHHHHHHH
Confidence 34667788888888877665422122333222 2223334555545677777666 33321 0112222222
Q ss_pred --HHHHHhcCChHHHHHHHHhcCCCCHhh--HH--HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--Hhcc
Q 012101 266 --IDMYGKCGRMDLAYKVFWEIDQPNVSS--WT--SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS--ACVH 337 (471)
Q Consensus 266 --~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~ 337 (471)
.-+|.-.++-+-...+...+...+... .. +|...++-.|+.+-...++..+.+.. +......+.. ++..
T Consensus 460 GLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 460 GIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333334455443334444443444322 12 22333456677777777887776642 3333333333 3446
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHH--HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYG--CMVDLLGRAGLLEEARAMVEGMPMKANVVIWGC--LMGACEKFGNVKMGE 413 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~--l~~~~~~~~~~~~a~ 413 (471)
.|+.+.+..+.+.+... -.|....-. ++.-+|+-.|+.....+++..+...++..+-.. +.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHH
Confidence 78888888888888643 133333222 233467788898888888888832333333233 333444567766667
Q ss_pred HHHHHHHhcCCCCCchHH--HHHHHHHcCCC-hHHHHHHHHHhhcC
Q 012101 414 WVAKHLQELEPWSDGAYV--VLSNIYASRGL-WEEVERIRAVMKHR 456 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~-~~~A~~~~~~m~~~ 456 (471)
++++.+.+.+ ++.+-. .+..+....|. ..+|..++..+...
T Consensus 615 rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D 658 (963)
T 4ady_A 615 RIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD 658 (963)
T ss_dssp HHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC
Confidence 7776555533 232222 33333333443 36788888888653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=0.9 Score=41.68 Aligned_cols=59 Identities=10% Similarity=-0.006 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
....++..+...|++++|...+..+ ...| +...|..++.++.+.|+..+|.+.|+++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666677777777777776666 3344 666777777777777777777777776643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.67 E-value=2 Score=30.14 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
+.-++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.+.|-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344667777777778889999999999999999999999999999997765433 446766654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.27 E-value=8.3 Score=41.05 Aligned_cols=79 Identities=6% Similarity=-0.001 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHhcc----CCCCCc--c--hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012101 158 CESGFISLYSKAGDFEKARKVFDE----NPERKL--G--SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVT 229 (471)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~--~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 229 (471)
.|.-++..+-+.+.++.+.++-.. ....+. . .|..+.+.+...|++++|...+-.+.....+ ...+..++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 355666667677766665554432 222221 1 4677777788888888887777777655332 33445555
Q ss_pred HHHcCcCCH
Q 012101 230 SACGSLGDL 238 (471)
Q Consensus 230 ~~~~~~~~~ 238 (471)
...|..+..
T Consensus 979 ~~lce~~~~ 987 (1139)
T 4fhn_B 979 NQLTKQGKI 987 (1139)
T ss_dssp HHHHHHCCH
T ss_pred HHHHhCCCh
Confidence 555554443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.24 E-value=3.9 Score=28.49 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=63.2
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012101 136 ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKK 215 (471)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 215 (471)
..++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45777777777776553 22333334466788999999999999999999998887754 577888888888878877
Q ss_pred CCCCCCHHHHHH
Q 012101 216 CGFEPDDVTMVS 227 (471)
Q Consensus 216 ~g~~p~~~~~~~ 227 (471)
.| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.62 E-value=1.2 Score=33.15 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 358 EPRFAHYGCMVDLLGRAGLLE---EARAMVEGM-PMKA--NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.|+..+--.+..++.+..+.+ ++..++++. ...| ....+-.+.-++.+.|++++|.+..+.+.+..|.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 355555445555666665543 466666666 2234 2345555667788888888888888888888877653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.61 E-value=5.4 Score=39.82 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=29.2
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGMP 388 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 388 (471)
|...|+++.|+++-++.... .|+ ..+|..|..+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456666666666665532 333 4456666666666666666666666664
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=88.38 E-value=4.1 Score=28.41 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=60.3
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012101 136 ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKK 215 (471)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 215 (471)
..++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45777777777776553 22233334456778899999999999999999988877754 466777788777777776
Q ss_pred CCCCCCHHHHHH
Q 012101 216 CGFEPDDVTMVS 227 (471)
Q Consensus 216 ~g~~p~~~~~~~ 227 (471)
.| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 66 555555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.13 E-value=5.2 Score=28.06 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=40.6
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 379 EARAMVEGM---PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 379 ~A~~~~~~m---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
++.+-++.+ ..-|+..+..+.++||.+.+|+..|.++|+-++..-.....+|-.+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344444444 667899999999999999999999999998887654333445665553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.15 E-value=12 Score=39.74 Aligned_cols=119 Identities=12% Similarity=0.057 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--------------------------CCHhhHHHHHHHHHhCCChhHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--------------------------PNVSSWTSMIVGYAANGLANEALD 311 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~li~~~~~~~~~~~a~~ 311 (471)
+....-.+..+|...|++++|...|.+... .-..-|..++..+-+.|.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 343344556677888888888888877642 001235667777777888888887
Q ss_pred HHHHHHHcCCCCCH----HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 012101 312 CFHYMRESGIRPNH----VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEE 379 (471)
Q Consensus 312 ~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 379 (471)
+-+...+....-+. ..|..+..++...|++++|...+-.+... .--......||...|..|..+.
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCChhh
Confidence 77766554221111 14666777778888888887777766432 2233456666666665555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.11 E-value=3.4 Score=37.79 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=43.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH----hcCCCCChhH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN----VYQIEPRFAH 363 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 363 (471)
.++..+...|+++++...+..+.... +-+...+..++.++...|+..+|.+.|+...+ ..|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555666677777776666666542 34566777777777777777777777766543 3466666554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.04 E-value=5.7 Score=30.91 Aligned_cols=52 Identities=6% Similarity=-0.074 Sum_probs=26.9
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC-----CCH-------hhHHHHHHHHHhCCChhHHHHHHHHH
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQ-----PNV-------SSWTSMIVGYAANGLANEALDCFHYM 316 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m 316 (471)
-+..+...|.++.|+-+.+.+.. ++. .++..+..++...|++.+|...|++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34555566666666655544331 221 13344455555566666666666554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.54 E-value=19 Score=31.85 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDC----FHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
+|.++..=|.+.+++++|.+++.. -...+.+.|+...|.++ ++...+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666678889999999887532 23445667776655554 455667788999888888888776
Q ss_pred cCCcHHHH-HHHHHHhH---HhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 012101 337 HGGKVQEG-KHFFEMMK---NVYQ--IEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 337 ~~~~~~~a-~~~~~~~~---~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~ 410 (471)
....-+-. ..+.+++. .++| -.-++.....+...|.+.+++.+|...|- .+..+....+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 55431111 11222221 1112 23456677788899999999999998884 355555567766665555544311
Q ss_pred HHHHHHHHHHhcCCCCCchHH-HHHHHHHcCCChHHHHHHHHHhhc
Q 012101 411 MGEWVAKHLQELEPWSDGAYV-VLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
....|. ..+--|...++...|..+++...+
T Consensus 185 ---------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ---------------TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 112222 334456677888888887666553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.38 E-value=5 Score=29.86 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 306 ANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
.-+..+-++.+....+.|+.......+.+|.+.+++..|.++|+-++.+.| +...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 345666677777778899999999999999999999999999999977644 34556776654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.95 E-value=25 Score=31.99 Aligned_cols=164 Identities=10% Similarity=0.002 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC--CChhHHHHHHHHHHhcCC-hHHHHHHHHhcCC---CCHhhH---
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK--SDTLMLNSLIDMYGKCGR-MDLAYKVFWEIDQ---PNVSSW--- 293 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~--- 293 (471)
.....+...|.+.|+.++..+++......-..+. ........+++.+....+ .+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777776666665411001111 012234455555554322 2222222222221 111222
Q ss_pred ---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhccCCcHHHHHHHHHHhHHhc-CCCCChhHH
Q 012101 294 ---TSMIVGYAANGLANEALDCFHYMRESGIRPNH-----VTFVGVLSACVHGGKVQEGKHFFEMMKNVY-QIEPRFAHY 364 (471)
Q Consensus 294 ---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~~ 364 (471)
.-++..|...|++.+|.+++.++.+.=-..|. ..+..-+..|...+++.++...+....... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 13556666677777776666666553111111 123334445566666666666666554321 121222222
Q ss_pred HH----HHHHHH-hcCCHHHHHHHHHh
Q 012101 365 GC----MVDLLG-RAGLLEEARAMVEG 386 (471)
Q Consensus 365 ~~----li~~~~-~~g~~~~A~~~~~~ 386 (471)
.. -...+. ..+++..|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 11 112234 56666666665544
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=83.69 E-value=16 Score=29.54 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCC
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANG 304 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 304 (471)
+..+-...+.++.+.|..+....+...+..++...-...+.++.+.+
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33344444444444444333333333333344444444444444443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.60 E-value=12 Score=27.92 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=39.5
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 386 GMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 386 ~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
.+.+-|+..+..+.+++|.+.+|+..|.++|+-++..-.....+|-.+++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34677999999999999999999999999999988655334556666554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.40 E-value=9.3 Score=26.64 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHH
Q 012101 236 GDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (471)
..-++|..+-+.+ ...+. ...+--.-+..+...|+|++|..+.+...-||...|-++- -.+.|..+++..-+.+
T Consensus 20 H~HqEA~tIAdwL--~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWL--ERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHH--HHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence 3456666666665 33332 2222222344567788999999888888888888887764 3577888888888878
Q ss_pred HHHcCCCCCHHHHHH
Q 012101 316 MRESGIRPNHVTFVG 330 (471)
Q Consensus 316 m~~~~~~p~~~~~~~ 330 (471)
+..+| .|....|..
T Consensus 94 la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 94 LGGSS-DPALADFAA 107 (115)
T ss_dssp HHTCS-SHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 87776 555555543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.77 E-value=10 Score=26.53 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHH
Q 012101 236 GDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (471)
..-++|..+-+.+ ...+. ...+--.-+..+...|+|++|..+.+...-||...|-++-. .+.|..+++..-+.+
T Consensus 21 H~HqEA~tIAdwL--~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWL--HLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHH--HHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3456666666655 33332 22222223445667888888888888888888888876643 466777777777777
Q ss_pred HHHcCCCCCHHHHHH
Q 012101 316 MRESGIRPNHVTFVG 330 (471)
Q Consensus 316 m~~~~~~p~~~~~~~ 330 (471)
+..+| .|....|..
T Consensus 95 la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 95 LARSQ-DPRIQTFVN 108 (116)
T ss_dssp HTTCC-CHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 77665 555555543
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.58 E-value=15 Score=29.69 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
..|......+-..|++++|.++|+...+.+
T Consensus 116 lfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 116 LFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444444444455555555554444443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.45 E-value=24 Score=29.99 Aligned_cols=118 Identities=12% Similarity=0.105 Sum_probs=70.7
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHHhc
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFA----HYGCMVDLLGRA 374 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~ 374 (471)
...+.|+.++++.....-++.. +-|...-..+++.+|-.|++++|.+-++...+. .|+.. +|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4566788888888887777663 446666667778888888888888888887644 45533 33333332
Q ss_pred CCHHHHHH-HHHhC---C-CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCC
Q 012101 375 GLLEEARA-MVEGM---P-MKANVVIWGCLMGACE--KFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 375 g~~~~A~~-~~~~m---~-~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
+...+ +|..- + +.....-...++.+.. ..|+.++|..+-.++.+.-|..+
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 11111 22211 1 1112223334444443 56888888888888877765544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=80.88 E-value=9.5 Score=28.39 Aligned_cols=68 Identities=9% Similarity=-0.015 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHhccCC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 012101 322 RPNHVTFVGVLSACVHGG---KVQEGKHFFEMMKNVYQIEP--RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN 392 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 392 (471)
.|+..|--....++.++. +..+++.+++++.+. + | ....+-.+.-++.+.|++++|.+..+.+ .+.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344444333444444443 334566666666543 2 3 2233444555666666666666666666 55553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 471 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 26/207 (12%), Positives = 67/207 (32%), Gaps = 10/207 (4%)
Query: 245 HKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFW---EIDQPNVSSWTSMIVGYA 301
+ Q + + ++L ++ G + LA F +D + ++ ++
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 302 ANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF 361
+ + A+ + + V + G + + +++P F
Sbjct: 215 EARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYR---RAIELQPHF 270
Query: 362 AH-YGCMVDLLGRAGLLEEARAMVE--GMPMKANVVIWGCLMGACEKFGNVKMGEWVAKH 418
Y + + L G + EA + L + GN++ + +
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330
Query: 419 LQELEPWSDGAYVVLSNIYASRGLWEE 445
E+ P A+ L+++ +G +E
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.001
Identities = 39/294 (13%), Positives = 79/294 (26%), Gaps = 19/294 (6%)
Query: 166 YSKAGDFEKARKVFDE----NPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD 221
+AGDFE A + + P+ G + + Q R + P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDN-TGVLLLLSSIHFQCRRLDRSAHFS--TLAIKQNPL 65
Query: 222 DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKV 281
A +LG++ + + +
Sbjct: 66 LAE------AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 282 FWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKV 341
+ + + + G +AL + ++ ++ G
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179
Query: 342 QEGKHF---FEMMKNVYQIEPRFAH-YGCMVDLLGRAGLLEEARAMVEGMP--MKANVVI 395
+ ++P F Y + ++L A + + A A + V+
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 396 WGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERI 449
G L + G + + + EL+P AY L+N +G E E
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC 293
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 471 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.98 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.98 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.95 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.67 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.63 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.47 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.45 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.4 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.28 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.26 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.08 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.07 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.99 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.98 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.89 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.89 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.88 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.79 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.75 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.75 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.62 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.47 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.39 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.36 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.33 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.31 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.23 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.21 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.15 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.95 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.91 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.9 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.25 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.09 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.02 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.29 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.16 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.58 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.88 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.01 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.97 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.8e-21 Score=178.12 Aligned_cols=372 Identities=12% Similarity=0.041 Sum_probs=290.8
Q ss_pred HHHhcccccCchHHHHHHhcccC--CCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 012101 59 SKCTNLLQLNQIYAHIIRTHMLH--SYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFA 136 (471)
Q Consensus 59 ~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 136 (471)
..+.+ .|++++|...++++- .+.+..++..+...|.+.|++++|+..|++..+.. +-+..++..+..++.+.|+
T Consensus 7 ~~~~~---~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 7 HREYQ---AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHH---HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 34455 688999999888763 23467788888999999999999999999988764 2356778888889999999
Q ss_pred chHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccC---CCCCcchHHHHHHHHHcCCChhHHHHHHHHH
Q 012101 137 LEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDEN---PERKLGSWNAIIAGLSQDGRAKEAIDMFIGL 213 (471)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 213 (471)
+++|...+....+.. +.+..............+....+....... ..................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence 999999999988865 334444444555555555555555444332 2334445666667777788888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCH
Q 012101 214 KKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNV 290 (471)
Q Consensus 214 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 290 (471)
.... +.+...+..+...+...|+++.|...++.. .... +.+...+..+...+...|++++|...|++..+ .+.
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 237 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA--VTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHH--HHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH
Confidence 7653 445667778888888999999999999988 4443 33567788899999999999999999987654 566
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
..+..+...+.+.|++++|...|++..+.. +-+..++..+...+...|++++|.+.++..... .+.+...+..+...
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHH
Confidence 778888889999999999999999988763 234667888888899999999999999988764 34566778888899
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 012101 371 LGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGL 442 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 442 (471)
+...|++++|.+.|++. .+.|+ ..++..+..++.+.|++++|...|+++.++.|.++..|..++.+|.+.|+
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999987 66674 56788899999999999999999999999999888899999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.7e-21 Score=180.43 Aligned_cols=360 Identities=12% Similarity=0.066 Sum_probs=293.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 012101 92 IIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD 171 (471)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 171 (471)
+...+.+.|++++|++.++++.+.. +-+...+..+..++.+.|++++|...++++++.. |.+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 3456778899999999999998764 2356778888889999999999999999999875 4566788999999999999
Q ss_pred hhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 172 FEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 172 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
+++|.+.+....+. +...+..........+....+........... .................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 99999999876543 33344555555556666666666666655554 344445555566667778888888888776
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 249 FQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
.... +.+...+..+...+...|++++|...+++..+ .+...|..+...+...|++++|...+++....+ +.+.
T Consensus 162 --~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 162 --IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp --HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred --hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 4433 34567788889999999999999999987654 456788889999999999999999999998864 4456
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGAC 403 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~ 403 (471)
..+..+...+.+.|++++|...|+++.+.. +-+...+..+...+...|++++|.+.++.. ..+.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 777788889999999999999999987642 334668889999999999999999999988 3345778899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
...|++++|+..++++.+..|.++.++..++.+|.+.|++++|.+.|++..+..+..
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999988899999999999999999999999998876543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=6.2e-14 Score=125.87 Aligned_cols=228 Identities=11% Similarity=0.015 Sum_probs=130.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDM 268 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (471)
.+-.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|+++.|...+... .+.. +-+...+..+...
T Consensus 21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a--l~~~-p~~~~~~~~la~~ 96 (323)
T d1fcha_ 21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRC--LELK-PDNQTALMALAVS 96 (323)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhh--hccc-ccccccccccccc
Confidence 33456667888999999999999988773 345778888888888999999999999888 4443 2356777788888
Q ss_pred HHhcCChHHHHHHHHhcCC--CCHhh----------------HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 012101 269 YGKCGRMDLAYKVFWEIDQ--PNVSS----------------WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVG 330 (471)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~--~~~~~----------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 330 (471)
|...|++++|.+.++.... |+... ....+..+...+.+.+
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 154 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE---------------------- 154 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHH----------------------
T ss_pred ccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHH----------------------
Confidence 8888888888888877543 11100 0011112222233344
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGN 408 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~ 408 (471)
|.+.+....+..+-.++...+..+...+...|++++|...+++. ...| +..+|..+..++...|+
T Consensus 155 -------------a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 221 (323)
T d1fcha_ 155 -------------VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 221 (323)
T ss_dssp -------------HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred -------------HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhccccccc
Confidence 44444444333222223334444444455555555555555544 2222 23344445555555555
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 409 VKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 409 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
+++|.+.++++.+..|.++.++..++.+|.+.|++++|++.|++..+
T Consensus 222 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 222 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555554444455555555555555555555554433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.1e-13 Score=124.15 Aligned_cols=250 Identities=10% Similarity=0.048 Sum_probs=165.7
Q ss_pred HHHHHHHhcCChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCC
Q 012101 161 GFISLYSKAGDFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGD 237 (471)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 237 (471)
.....+.+.|++++|.+.|++..+. +..+|..+..++...|++++|+..|++..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4566788999999999999986543 45589999999999999999999999988763 4456788888899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhHH---------------HHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHh
Q 012101 238 LELALQVHKYVFQVKSKQKSDTLML---------------NSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAA 302 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 302 (471)
+++|.+.++.. ....... .... ...+..+...+.+.+|...|.+..
T Consensus 103 ~~~A~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al---------------- 163 (323)
T d1fcha_ 103 QRQACEILRDW--LRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV---------------- 163 (323)
T ss_dssp HHHHHHHHHHH--HHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred ccccccchhhH--HHhccch-HHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHH----------------
Confidence 99999999988 4432211 1100 011111222233333433333221
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 012101 303 NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARA 382 (471)
Q Consensus 303 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 382 (471)
. ...-.++...+..+...+...|++++|...+++..... +-+...|..+...|...|++++|.+
T Consensus 164 --------~------~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 227 (323)
T d1fcha_ 164 --------R------LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVA 227 (323)
T ss_dssp --------H------HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------H------HhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHH
Confidence 1 11112334455556666666777777777777765442 2235566677777777888888877
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----------hHHHHHHHHHcCCChHHH
Q 012101 383 MVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG-----------AYVVLSNIYASRGLWEEV 446 (471)
Q Consensus 383 ~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A 446 (471)
.|++. ...| +..+|..+..+|.+.|++++|+..|++..++.|.+.. .|..+..++...|+.+.+
T Consensus 228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77776 4445 4567888888888999999999999888887665443 234455566555655544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.4e-09 Score=97.82 Aligned_cols=159 Identities=13% Similarity=0.026 Sum_probs=69.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCC----CCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-----hhHHH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGI----RPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-----FAHYG 365 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~ 365 (471)
.+...+...|+++.+...+........ ......+......+...++...+...+........-..+ ...+.
T Consensus 138 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (366)
T d1hz4a_ 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 217 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHH
Confidence 344444555555555555554443211 111222333333344445555555444443322111111 11233
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHH
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKA-----NVVIWGCLMGACEKFGNVKMGEWVAKHLQELE------PWSDGAYVVL 433 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l 433 (471)
.+...+...|++++|...++.. ...| ....+..+..++...|++++|...++++.... +.....+..+
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHH
Confidence 3344445555555555555554 1111 12334444555555555555555555554321 1111234455
Q ss_pred HHHHHcCCChHHHHHHHHHh
Q 012101 434 SNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~m 453 (471)
+.+|.+.|++++|.+.+++.
T Consensus 298 a~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=9.7e-09 Score=90.52 Aligned_cols=185 Identities=11% Similarity=0.052 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-C-HhhHHHHHHHHHhCCChhHHHHH
Q 012101 237 DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P-N-VSSWTSMIVGYAANGLANEALDC 312 (471)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~~~~~~a~~~ 312 (471)
..+.+..+|+.. ++...+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+....+.|+.+.|.++
T Consensus 79 ~~~~a~~i~~ra--l~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 79 FSDEAANIYERA--ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHH--HTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred chHHHHHHHHHH--HHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 456778888887 6555555667788888888888999999999988754 2 2 34678888888888899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHH-HhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 012101 313 FHYMRESGIRPNHVTFVGVLS-ACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM---- 387 (471)
Q Consensus 313 ~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 387 (471)
|.++.+.+.. +...|..... -+...|+.+.|..+|+.+...+ +.+...|...++.+.+.|+.+.|..+|++.
T Consensus 157 ~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 157 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 9988876432 3333333322 2344678899999999887763 344667888888888999999999999886
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 388 PMKAN--VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 388 ~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
+..|+ ...|...+..-...|+.+.+..+.+++.+.-|..
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 34443 4578888888888899999999998888877654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=1.6e-09 Score=93.03 Aligned_cols=218 Identities=11% Similarity=-0.019 Sum_probs=121.7
Q ss_pred ChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012101 202 RAKEAIDMFIGLKKCGFEPD---DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLA 278 (471)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 278 (471)
+.+.++.-+++........+ ..++..+..+|.+.|++++|...|+.. +... +-+..+|..+..+|.+.|++++|
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~a--l~l~-p~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA--LAIR-PDMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHh--hccC-CCCHHHHhhhchHHHHHHHHHHh
Confidence 45566666666665422111 135555666777788888888888877 4432 23566777777788888888888
Q ss_pred HHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhc
Q 012101 279 YKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVY 355 (471)
Q Consensus 279 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 355 (471)
...|++..+ .+..+|..+..++...|++++|...|++..+.. +.+......+..++.+.+..+.+..+.......
T Consensus 91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (259)
T d1xnfa_ 91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 168 (259)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-
Confidence 888877654 334566777777777788888888887777653 223333333333344444444444444444321
Q ss_pred CCCCChhHHHHHHHHHHhcCCH----HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 356 QIEPRFAHYGCMVDLLGRAGLL----EEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 356 ~~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
.+....+. ++..+...... +.+...+... ...|+ ..+|..+...+...|++++|...|++..+.+|.+.
T Consensus 169 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 169 --DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp --CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred --chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 22222222 22222222121 2222211111 22232 23556667777777777777777777777777554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.3e-07 Score=84.41 Aligned_cols=258 Identities=10% Similarity=-0.029 Sum_probs=144.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCc------chHHHHHHHHhccCCchHHHHHHHHHHHhCCC-CC----cchHH
Q 012101 92 IIRLYTRLEAPKKALDIYIFMSRAGVLPDC------YTLPIVLKASCQLFALEIGRQLHSLAVRLGLE-SN----EFCES 160 (471)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 160 (471)
....+...|++++|++++++..+.. |+. ..+..+...+...|++++|...+++..+.... ++ ...+.
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3455677888888888888887653 332 24555666777888888888888887653211 11 22344
Q ss_pred HHHHHHHhcCChhhHHHHhccCC-------CCCc----chHHHHHHHHHcCCChhHHHHHHHHHHHCC----CCCCHHHH
Q 012101 161 GFISLYSKAGDFEKARKVFDENP-------ERKL----GSWNAIIAGLSQDGRAKEAIDMFIGLKKCG----FEPDDVTM 225 (471)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~~~-------~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~ 225 (471)
.+...+...|++..+...+.... .+.. ..+..+...+...|+++.+...+....... .......+
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 55566777777777777665421 1111 134555666777778887777777665432 12223344
Q ss_pred HHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhcCCC-------CHhhHH
Q 012101 226 VSVTSACGSLGDLELALQVHKYVFQVKSKQKSD----TLMLNSLIDMYGKCGRMDLAYKVFWEIDQP-------NVSSWT 294 (471)
Q Consensus 226 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~ 294 (471)
......+...++...+...+............. ...+..+...+...|++++|...+....+. ....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 445555566667776666666552221211111 123444455566666677776666655431 122344
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHh
Q 012101 295 SMIVGYAANGLANEALDCFHYMRE----SGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMM 351 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (471)
.+...+...|++++|...+++... .+..|+ ...+..+...|...|++++|.+.+++.
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455566666666666666665542 122332 223444445555566666666655554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=2.9e-08 Score=87.39 Aligned_cols=184 Identities=5% Similarity=-0.077 Sum_probs=143.6
Q ss_pred CChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHH
Q 012101 273 GRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 273 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
+..++|..+|++..+ .+...|...+......|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345778888887543 4556788888889999999999999999987643333557888888899999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 349 EMMKNVYQIEPRFAHYGCMVDL-LGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 349 ~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
+.+.+.. +.+...|...... +...|+.+.|..+|+.+ ...| +...|...+..+.+.|+++.|..+|++..+..+.
T Consensus 158 ~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9997642 2233444444433 33468999999999998 3333 5778999999999999999999999999988765
Q ss_pred CCc----hHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 426 SDG----AYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 426 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
++. .|...+......|+.+.+.++.+++.+.-.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 543 677778877888999999999998866543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=7.3e-09 Score=88.74 Aligned_cols=196 Identities=11% Similarity=-0.003 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
.++..+..+|.+.|++++|...|++..+ .++.+|+.+..++.+.|++++|+..|++..+.. +-+...+..+..++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 4566667778888888888888877653 456677777788888888888888888877753 223456666677777
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----hcCCHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACE----KFGNVKM 411 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~----~~~~~~~ 411 (471)
..|+++.|.+.|+...+.. +.+......+...+.+.+..+.+..+.... ...++...++ ++..+. ..+..+.
T Consensus 117 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHHHH
Confidence 7788888888887776542 223333333344445555554444444433 1111111111 111221 1122333
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 412 GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+...+.......+....+|..++..|...|++++|.+.|+.....++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 333333333333433446667777888888888888888877765543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=5.3e-09 Score=92.39 Aligned_cols=225 Identities=10% Similarity=0.036 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhcCC---CCHhhHHHHH
Q 012101 222 DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG-RMDLAYKVFWEIDQ---PNVSSWTSMI 297 (471)
Q Consensus 222 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li 297 (471)
...++.+...+.+.+..++|.++++.+ ++.. +-+...|+....++...| ++++|...+++..+ .+..+|+.+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~a--i~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDA--IELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH--HHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 345666666777888999999999999 5553 335678888888888876 58999999988764 5678899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC
Q 012101 298 VGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGL 376 (471)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 376 (471)
..+.+.|++++|+..++++.+.. +-+...|..+...+.+.|++++|.+.++.+.+. .| +...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccc
Confidence 99999999999999999999863 335788888999999999999999999999865 34 45567766666665554
Q ss_pred ------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--hHHHHHHHHHcC--CChH
Q 012101 377 ------LEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG--AYVVLSNIYASR--GLWE 444 (471)
Q Consensus 377 ------~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~--g~~~ 444 (471)
+++|.+.+... ...| +...|+.+...+.. ...+++.+.++...++.|.+.. .+..++..|... +..+
T Consensus 196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~ 274 (315)
T d2h6fa1 196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274 (315)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence 67888888776 5556 56677777665544 4568888899998888876544 445667776543 5666
Q ss_pred HHHHHHHHhh
Q 012101 445 EVERIRAVMK 454 (471)
Q Consensus 445 ~A~~~~~~m~ 454 (471)
.+...+++..
T Consensus 275 ~~~~~~~ka~ 284 (315)
T d2h6fa1 275 NKEDILNKAL 284 (315)
T ss_dssp SHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=1.7e-09 Score=96.87 Aligned_cols=229 Identities=8% Similarity=-0.062 Sum_probs=159.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC--cCCHHHHHHHHHHHHHhhcCCCCChhHH-HHHHHHHHhcCCh
Q 012101 199 QDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS--LGDLELALQVHKYVFQVKSKQKSDTLML-NSLIDMYGKCGRM 275 (471)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~ 275 (471)
..|++++|+.+++...+.. +-+...+..+..++.. .++++.+...+..+ ..... .+...+ ......+...+.+
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a--l~~~~-~~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARF--LEADE-RNFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH--HHHCT-TCHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHH--HhhCc-hhhhhhhhHHHHHHHhcccc
Confidence 3455778888888887653 3455555555555544 44588888888888 55433 234443 4455677788999
Q ss_pred HHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 276 DLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 276 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
++|...++...+ .+...|+.+...+.+.|++++|...+.+..+. .|+.. .....+...+..+.+...+....
T Consensus 161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHH
Confidence 999999988876 45677888888888888888776665544432 22221 12223344455666777777765
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 012101 353 NVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAY 430 (471)
Q Consensus 353 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 430 (471)
.. -+++...+..+...+...|+.++|...+.+. ...| +..++..+..++...|++++|.+.++++.+++|.....|
T Consensus 236 ~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 236 LG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp HS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred Hh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 43 2344455666777888889999999988887 6666 456888899999999999999999999999999776677
Q ss_pred HHHHHHHH
Q 012101 431 VVLSNIYA 438 (471)
Q Consensus 431 ~~l~~~~~ 438 (471)
..|...+.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76766554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=7.9e-08 Score=84.67 Aligned_cols=209 Identities=11% Similarity=0.088 Sum_probs=143.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcC-CHHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLG-DLELALQVHKYVFQVKSKQKSDTLMLNSLID 267 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (471)
+|+.+...+.+.+.+++|+++++++.+.. +-+...|+....++...+ ++++|...++.+ ++.. +-+..+|..+..
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~a--l~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAI--IEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH--HHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHH--HHHH-HhhhhHHHHHhH
Confidence 56667777788888889998888888763 334556677777766655 588888888887 4443 335778888888
Q ss_pred HHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC------
Q 012101 268 MYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG------ 338 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------ 338 (471)
.+.+.|++++|...++++.+ .+...|..+...+...|++++|++.++++.+.. +-+...|+.+...+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 88888999999988888765 567788888888888899999999999988863 22455555544443333
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM----PMKANVVIWGCLMGACEK 405 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~ 405 (471)
+.+++|.+.+..+.+.. +.+...|..+...+...| .+++.+.++.. +...+...+..+...|..
T Consensus 200 ~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC--CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 33677888888776552 234556666655554433 45555555554 323355566666666643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.67 E-value=2.3e-08 Score=89.17 Aligned_cols=226 Identities=6% Similarity=-0.095 Sum_probs=135.1
Q ss_pred CChhhHHHHhccCCC---CCcchHHHHHHHHHcCC--ChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHcCcCCHHHHHH
Q 012101 170 GDFEKARKVFDENPE---RKLGSWNAIIAGLSQDG--RAKEAIDMFIGLKKCGFEPDDVTMV-SVTSACGSLGDLELALQ 243 (471)
Q Consensus 170 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~~~~~~a~~ 243 (471)
|++++|+.+++...+ .+...|..+..++...+ ++++|+..+++..+.. +++...+. .....+...+.++.|..
T Consensus 87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence 334455555544322 23334555555555544 4677777777776653 33344433 33455666777888888
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 012101 244 VHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP 323 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 323 (471)
.++.+ +... +.+...|+.+..++.+.|++++|...+....+...... .....+...+..+++...+....... ++
T Consensus 166 ~~~~~--i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~ 240 (334)
T d1dcea1 166 FTDSL--ITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-AE 240 (334)
T ss_dssp HHHTT--TTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-CC
T ss_pred HHHHH--HHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-cc
Confidence 77776 4443 23566777777788888887776655544433211111 12333455566677777777766653 33
Q ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 012101 324 NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLM 400 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~ 400 (471)
+...+..+...+...++.++|...+.+.... .| +...+..+...|...|++++|.+.++.. .+.|+ ...|+.+.
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 241 PLFRCELSVEKSTVLQSELESCKELQELEPE---NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 3444555555666667888888887777533 33 3456677778888888888888888888 66674 34555555
Q ss_pred HHHH
Q 012101 401 GACE 404 (471)
Q Consensus 401 ~~~~ 404 (471)
..+.
T Consensus 318 ~~~~ 321 (334)
T d1dcea1 318 SKFL 321 (334)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=4.5e-07 Score=78.76 Aligned_cols=191 Identities=11% Similarity=0.003 Sum_probs=116.9
Q ss_pred HHHHHhcCChHHHHHHHHhcCC-----CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CC-CCCHHHHHHH
Q 012101 266 IDMYGKCGRMDLAYKVFWEIDQ-----PN----VSSWTSMIVGYAANGLANEALDCFHYMRES----GI-RPNHVTFVGV 331 (471)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~l 331 (471)
...|...|++++|...|.+..+ .+ ..+|..+..+|.+.|++++|.+.+++..+. |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 4456677777777777766543 11 246777777888888888888887765432 11 1113345555
Q ss_pred HHHh-ccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-------CCH-HHHH
Q 012101 332 LSAC-VHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM-PMK-------ANV-VIWG 397 (471)
Q Consensus 332 l~~~-~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-------p~~-~~~~ 397 (471)
...| ...|++++|.+.+++..+......+ ..++..+...|...|++++|.+.|++. ... ... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 5555 3468888888888776543211111 234667788888888888888888876 111 111 2234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHc--CCChHHHHHHHHHhhcC
Q 012101 398 CLMGACEKFGNVKMGEWVAKHLQELEPWSDG-----AYVVLSNIYAS--RGLWEEVERIRAVMKHR 456 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m~~~ 456 (471)
..+..+...|+++.|...+++..+..|..+. ....++.++.. .+.+++|+..|+.+.+.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 4555667788888888888888887654322 23455666654 34678888877665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=4.6e-08 Score=72.10 Aligned_cols=92 Identities=14% Similarity=0.060 Sum_probs=59.7
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 012101 368 VDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEE 445 (471)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (471)
...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+.+|.++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 34455666666666666666 3334 445666666666677777777777777777666666666677777777777777
Q ss_pred HHHHHHHhhcCCCc
Q 012101 446 VERIRAVMKHRNLA 459 (471)
Q Consensus 446 A~~~~~~m~~~~~~ 459 (471)
|+..+++..+..+.
T Consensus 90 A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 90 AKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 77777666665443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=7.1e-08 Score=78.85 Aligned_cols=116 Identities=9% Similarity=-0.140 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 012101 323 PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLM 400 (471)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~ 400 (471)
|+...+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|+.. .+.| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 667777777788888888888888888876652 345567788888888888888888888887 6677 466888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 012101 401 GACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR 440 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (471)
.+|...|++++|...|+++.++.|.+...+...+..+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 8888888888888888888887765554444444444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.3e-06 Score=70.32 Aligned_cols=141 Identities=10% Similarity=-0.086 Sum_probs=94.6
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHH
Q 012101 266 IDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGK 345 (471)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (471)
...+...|+++.|.+.|.++.+++..+|..+..+|...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4556778899999999998888888888888888999999999999999888764 334667777888888889999998
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 346 HFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 346 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
+.|++..... +.+... .|...| +..+++ ..++..+..++.+.|++++|.+.++...+..|
T Consensus 91 ~~~~kAl~~~--~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQL--RGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHTT--TTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhC--ccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8888875421 111100 000000 001111 23444555666677777777777777666665
Q ss_pred CC
Q 012101 425 WS 426 (471)
Q Consensus 425 ~~ 426 (471)
.+
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 43
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=7.2e-07 Score=71.97 Aligned_cols=121 Identities=9% Similarity=-0.042 Sum_probs=92.9
Q ss_pred HhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~ 411 (471)
.+...|+++.|.+.|.++. +|+..+|..+..+|...|++++|.+.|++. .+.| +...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 3456788888888887652 466677777888888888888888888887 5555 55688888888889999999
Q ss_pred HHHHHHHHHhcCCCCC----------------chHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 412 GEWVAKHLQELEPWSD----------------GAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
|...|++.....+.++ .++..++.+|.+.|++++|.+.++...+..+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9988888876543332 24567888999999999999999988765543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.1e-06 Score=64.49 Aligned_cols=104 Identities=10% Similarity=-0.022 Sum_probs=80.9
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 409 (471)
...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...++.. .+.| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 445677788888888888887652 344567888888888888888888888887 4444 667888888899999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012101 410 KMGEWVAKHLQELEPWSDGAYVVLSNIY 437 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (471)
++|+..+++..+..|.++..+..+..+-
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999998888877666665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.47 E-value=2e-07 Score=67.94 Aligned_cols=88 Identities=11% Similarity=-0.045 Sum_probs=79.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
.+...+.+.|++++|...|++. ...| +..+|..+..++.+.|++++|+..++++.+..|.++..+..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566788899999999999998 5556 5779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 012101 444 EEVERIRAVM 453 (471)
Q Consensus 444 ~~A~~~~~~m 453 (471)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=4.7e-07 Score=73.78 Aligned_cols=96 Identities=8% Similarity=-0.044 Sum_probs=79.7
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGC 366 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 366 (471)
|+...+......+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...|+...+ +.|+ ...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 455566677888999999999999999988764 44677788888899999999999999999874 4564 567888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 012101 367 MVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m 387 (471)
+..+|.+.|++++|...|+..
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999876
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.4e-06 Score=67.98 Aligned_cols=116 Identities=8% Similarity=0.016 Sum_probs=89.2
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 409 (471)
...|.+.|++++|...|+++.+.. +-+...|..+..+|...|++++|.+.|+.. .+.| +..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 445678888999999998887652 345667888888889999999999999888 5555 557889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHH--HcCCChHHHHHH
Q 012101 410 KMGEWVAKHLQELEPWSDGAYVVLSNIY--ASRGLWEEVERI 449 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~ 449 (471)
++|...+++..+..|.++..+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999988877766655443 334455555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=3.8e-06 Score=72.66 Aligned_cols=174 Identities=11% Similarity=-0.066 Sum_probs=128.4
Q ss_pred ChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhccCCcHHHHHHHH
Q 012101 274 RMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRES----GIRPN-HVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
++++|..+|. .....|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|.+.+
T Consensus 32 ~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4677776644 4567888999999999999988653 22222 357888889999999999999999
Q ss_pred HHhHHhcCCCCC----hhHHHHHHHHHHh-cCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 012101 349 EMMKNVYQIEPR----FAHYGCMVDLLGR-AGLLEEARAMVEGM-------PMKAN-VVIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 349 ~~~~~~~~~~p~----~~~~~~li~~~~~-~g~~~~A~~~~~~m-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
+...+...-..+ ...+..+...|.. .|++++|.+.+++. +..+. ..++..+...+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 987654221222 3445566666644 69999999999876 21221 34678889999999999999999
Q ss_pred HHHHHhcCCCCCc-------hHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 416 AKHLQELEPWSDG-------AYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 416 ~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
++++....+..+. .+...+..+...|+++.|.+.+++..+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999987765542 244566677889999999999999987754
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=9.7e-07 Score=68.85 Aligned_cols=94 Identities=13% Similarity=-0.033 Sum_probs=84.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
.....|.+.|++++|...|++. .+.| +...|..+..+|...|++++|...|+++.+.+|.+..+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456788999999999999998 5555 6678999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHHhhcCCCc
Q 012101 444 EEVERIRAVMKHRNLA 459 (471)
Q Consensus 444 ~~A~~~~~~m~~~~~~ 459 (471)
++|.+.+++.....+.
T Consensus 95 ~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 95 RAALRDYETVVKVKPH 110 (159)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999876543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.28 E-value=0.00012 Score=61.85 Aligned_cols=150 Identities=11% Similarity=-0.095 Sum_probs=90.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHH
Q 012101 304 GLANEALDCFHYMRESGIRPNHVTFV-GVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR----AGLLE 378 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 378 (471)
.+.+.|...++...+.|.......+. ..............+...+..... ..+...+..+...|.. ..+..
T Consensus 88 ~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~ 163 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLK 163 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred hhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccc
Confidence 45566666666666654322211111 111112233455666666666543 2445556666666654 45566
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc----CCChHHHHHHH
Q 012101 379 EARAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS----RGLWEEVERIR 450 (471)
Q Consensus 379 ~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 450 (471)
.+...++...-..+......+...|.. ..++++|...|++..+.+. +..+..|+.+|.+ ..+.++|.+.|
T Consensus 164 ~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--~~a~~~LG~~y~~G~g~~~n~~~A~~~~ 241 (265)
T d1ouva_ 164 KALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENF 241 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred cchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccC--HHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 666666665223355666666655554 5688999999998888763 4567778888875 34788899999
Q ss_pred HHhhcCCCc
Q 012101 451 AVMKHRNLA 459 (471)
Q Consensus 451 ~~m~~~~~~ 459 (471)
++..+.|..
T Consensus 242 ~kAa~~g~~ 250 (265)
T d1ouva_ 242 KKGCKLGAK 250 (265)
T ss_dssp HHHHHHTCH
T ss_pred HHHHHCcCH
Confidence 888777654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=0.00081 Score=58.17 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCc
Q 012101 191 NAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSL 235 (471)
Q Consensus 191 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 235 (471)
..++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus 103 ~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 103 EELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 34555555555555555555544322 133444455555555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=6.8e-06 Score=64.56 Aligned_cols=132 Identities=10% Similarity=-0.080 Sum_probs=91.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLL 371 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 371 (471)
.+......+.+.|++++|+..|++....- |.. .+..+.-......+. ..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 34445566777888888888887766531 100 000000111111111 23566788889
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 012101 372 GRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEE 445 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (471)
.+.|++++|...++.. .+.| +..+|..+..+|...|++++|...|+++.++.|.++.+...+..+..+.+...+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 5566 677999999999999999999999999999999888888777777655544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=9.8e-06 Score=59.40 Aligned_cols=101 Identities=14% Similarity=-0.006 Sum_probs=73.1
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL---EEARAMVEGM-PMKANV---VIWGCLMGA 402 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~l~~~ 402 (471)
.++..+...+++++|++.|+...... +.+..++..+..++.+.++. ++|.++++++ ...|+. .+|..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 45666777788888888888887652 34556777777777765544 4588888876 444433 367778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSDGAYVV 432 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 432 (471)
|.+.|++++|.+.|+++.+.+|.+......
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l 111 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKEL 111 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence 999999999999999999998877654443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.6e-05 Score=62.30 Aligned_cols=66 Identities=8% Similarity=-0.149 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+|+.+..+|.+.|++++|+..+++..+++|.++.++..++.+|...|++++|...|+...+.++.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~ 128 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 128 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 456778889999999999999999999999999999999999999999999999999999886654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.0025 Score=54.94 Aligned_cols=238 Identities=9% Similarity=0.027 Sum_probs=131.7
Q ss_pred CCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHH
Q 012101 119 PDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLS 198 (471)
Q Consensus 119 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 198 (471)
||..-...+.+.|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+.+.+.. +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 455555566677777888888888887532 35667777788888888877776543 4557777788877
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012101 199 QDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLA 278 (471)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 278 (471)
+.....-+ .+...+...+......++..|-..|.++....+++.. ... ...+...++-++..|++.+. ++.
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~--~~~-~~~~~~~~~~L~~lyak~~~-~kl 151 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA--LGL-ERAHMGMFTELAILYSKFKP-QKM 151 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--TTS-TTCCHHHHHHHHHHHHTTCH-HHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHH--HcC-CccchHHHHHHHHHHHHhCh-HHH
Confidence 77655443 2222334456666678888898999999999999877 533 34567788889999988653 444
Q ss_pred HHHHHhcCC-CC----------HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHH
Q 012101 279 YKVFWEIDQ-PN----------VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHF 347 (471)
Q Consensus 279 ~~~~~~~~~-~~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 347 (471)
.+.++.... -| ...|.-++-.|.+.|++++|..++- ++ .++.......+..+.+..+.+...++
T Consensus 152 ~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~ 226 (336)
T d1b89a_ 152 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVELYYRA 226 (336)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHH
Confidence 444544321 11 1234455555666666666654432 22 23333333444555566666655555
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012101 348 FEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEG 386 (471)
Q Consensus 348 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 386 (471)
.....+. .|+ ..+.++......-++.++.+.+++
T Consensus 227 i~~yL~~---~p~--~i~~lL~~v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 227 IQFYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSK 260 (336)
T ss_dssp HHHHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHc---CHH--HHHHHHHHhccCCCHHHHHHHHHh
Confidence 5544432 232 234444444444455554444444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.07 E-value=4.1e-05 Score=59.79 Aligned_cols=91 Identities=11% Similarity=-0.067 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR 440 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (471)
+|+.+..+|.+.|++++|...++.. .+.| +..+|..+..++...|++++|...|+++.+++|.++.+...+..+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4666778899999999999999988 4444 6779999999999999999999999999999998888877777776555
Q ss_pred CChHH-HHHHHHHh
Q 012101 441 GLWEE-VERIRAVM 453 (471)
Q Consensus 441 g~~~~-A~~~~~~m 453 (471)
+...+ ..+++..|
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 44433 34444444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=9.4e-06 Score=60.29 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHH
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG-------AYVVLS 434 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~ 434 (471)
+..+...|.+.|++++|.+.|.+. .+.| +...+..+..+|.+.|++++|...++++.++.|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677888899999999999888 4455 5778888999999999999999999999988876654 455677
Q ss_pred HHHHcCCChHHHHHHHHHhhcC
Q 012101 435 NIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
..+...+++++|.+.+++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 7788889999999999887643
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=4.7e-06 Score=61.19 Aligned_cols=96 Identities=6% Similarity=-0.095 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC--chHHHHHHHH
Q 012101 365 GCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG---NVKMGEWVAKHLQELEPWSD--GAYVVLSNIY 437 (471)
Q Consensus 365 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~ 437 (471)
..++..+...+++++|.+.|++. ...| +..++..+..++.+.+ ++++|+.+++++.+.+|.+. .++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46778888999999999999998 5555 6678888999998755 45679999999988876543 3788999999
Q ss_pred HcCCChHHHHHHHHHhhcCCCcc
Q 012101 438 ASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
.+.|++++|++.|+++.+..+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~ 105 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQN 105 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhhHHHHHHHHHHHHhCcCC
Confidence 99999999999999999876543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=3.4e-05 Score=60.39 Aligned_cols=84 Identities=8% Similarity=-0.110 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
...|..+..+|.+.|++++|...++.. .+.| +..+|..+..++...|++++|...|+++.++.|.++.+...+..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345677788899999999999999988 6666 56789999999999999999999999999999988877777766655
Q ss_pred cCCChH
Q 012101 439 SRGLWE 444 (471)
Q Consensus 439 ~~g~~~ 444 (471)
+.....
T Consensus 157 ~l~~~~ 162 (169)
T d1ihga1 157 KIKAQK 162 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.98 E-value=5.8e-05 Score=57.84 Aligned_cols=125 Identities=10% Similarity=-0.130 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLL 371 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 371 (471)
.+......+.+.|++.+|+..|.+....- |. ............... ....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~-----------~~~~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IH-----------TEEWDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TT-----------CTTCCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-----------hhhhhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 44555667777888888888887766531 10 000000000000011 1224667788888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012101 372 GRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIY 437 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (471)
.+.|++++|++.++.. .+.| +..+|..+..++...|++++|...|++..+++|.+..+...+..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8999999999998887 5555 6778999999999999999999999999999988876665554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.89 E-value=6.1e-05 Score=57.71 Aligned_cols=66 Identities=14% Similarity=-0.088 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+|..+..+|.+.|++++|+..++++.+.+|.+..+|..++.+|...|++++|...|++..+.++.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 467778889999999999999999999999999999999999999999999999999999887654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.89 E-value=0.0047 Score=51.54 Aligned_cols=221 Identities=10% Similarity=-0.097 Sum_probs=118.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC----cCCHHHHHHHHHHHHHhhcCCCCChhHHHH
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS----LGDLELALQVHKYVFQVKSKQKSDTLMLNS 264 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 264 (471)
.+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...+...+... .+.+ +......
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a--~~~~---~~~a~~~ 75 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA--CDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTT---CHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccc--cccc---ccchhhc
Confidence 34445555556666666666666666554 23333333333332 44566666666655 3333 2223333
Q ss_pred HHHHHHh----cCChHHHHHHHHhcCC-CCHhhHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 265 LIDMYGK----CGRMDLAYKVFWEIDQ-PNVSSWTSMIVGYAA----NGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 265 l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
+...+.. ..+.+.|...++...+ ........+...+.. ......+...+......+ +...+..+...+
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~ 152 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 152 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhhh
Confidence 3333332 3455666666655433 122222223233332 234555666666555432 444444455444
Q ss_pred cc----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 012101 336 VH----GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR----AGLLEEARAMVEGMPMKANVVIWGCLMGACEK-- 405 (471)
Q Consensus 336 ~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~-- 405 (471)
.. ..+...+...++...+. .+......+...|.. ..++++|...|+.....-+...+..|...|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 228 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred ccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCC
Confidence 43 45666777777776543 244444455555544 56788888888887222255666667666664
Q ss_pred --cCCHHHHHHHHHHHHhcCC
Q 012101 406 --FGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 406 --~~~~~~a~~~~~~~~~~~~ 424 (471)
..+.++|.+.|++..+.+.
T Consensus 229 g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 229 GVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CCccCHHHHHHHHHHHHHCcC
Confidence 3478888888888888775
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.88 E-value=2.2e-05 Score=56.62 Aligned_cols=89 Identities=6% Similarity=-0.145 Sum_probs=67.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcC
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAG 170 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 170 (471)
.+-..+.+.|++++|+..|++..+... -+...|..+..++.+.|++++|...+++.++.. |.+..++..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 345567778888888888888877642 256777777788888888888888888888765 455677777888888888
Q ss_pred ChhhHHHHhcc
Q 012101 171 DFEKARKVFDE 181 (471)
Q Consensus 171 ~~~~a~~~~~~ 181 (471)
++++|.+.|++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88888877764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=4.9e-05 Score=59.40 Aligned_cols=68 Identities=6% Similarity=-0.117 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+...|..+..++.+.|++++|+..+.++.++.|.++..|..++.+|.+.|++++|++.|++..+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~ 143 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 143 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34567778899999999999999999999999999999999999999999999999999999886554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.75 E-value=0.00014 Score=57.15 Aligned_cols=117 Identities=9% Similarity=0.023 Sum_probs=76.8
Q ss_pred HHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 012101 333 SACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKA-NVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~l~~~~~~~~~~~~ 411 (471)
......|++++|.+.|......+ +.... ......+.+...-..+ .+ ....+..+..++.+.|++++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~---rG~~l--------~~~~~~~w~~~~r~~l--~~~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREW---RGPVL--------DDLRDFQFVEPFATAL--VEDKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC---CSSTT--------GGGTTSTTHHHHHHHH--HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC---ccccc--------ccCcchHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCchH
Confidence 35667788888888888876542 21110 0000000000000000 01 23466778888889999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc-----CCCccCC
Q 012101 412 GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH-----RNLAKIP 462 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 462 (471)
|...++++.+..|.+...|..++.+|.+.|++++|++.|+++.. -|+.+.+
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 99999999999998888999999999999999999999888743 4665443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.75 E-value=0.00018 Score=56.04 Aligned_cols=66 Identities=8% Similarity=-0.101 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+|..+..+|.+.|++++|+..+++..+++|.+...|..++.+|...|++++|.+.|+++.+.++.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~ 130 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 356667788999999999999999999999999999999999999999999999999999887654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=1.1e-05 Score=75.53 Aligned_cols=93 Identities=10% Similarity=-0.079 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
.+..+...+.+.|+.++|...++.. ...| ..++..+...+...|++++|...++++.++.|.+...|+.|+.+|...|
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp ---------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence 3444444555555555555444332 1111 2344455555556666666666666666666655556666666666666
Q ss_pred ChHHHHHHHHHhhcC
Q 012101 442 LWEEVERIRAVMKHR 456 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~ 456 (471)
+..+|...|.+....
T Consensus 201 ~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 201 DHLTTIFYYCRSIAV 215 (497)
T ss_dssp CHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHhC
Confidence 666666555555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00034 Score=51.45 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=26.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 296 MIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
+...+.+.|++++|+..|++..+.+ +.+...+..+..+|.+.|+++.|.+.++.+.
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3344445555555555555544432 2234444444455555555555555555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.47 E-value=0.00033 Score=53.59 Aligned_cols=87 Identities=13% Similarity=-0.096 Sum_probs=60.5
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----C-----
Q 012101 370 LLGRAGLLEEARAMVEGM----PMKA----------NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW----S----- 426 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m----~~~p----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~----- 426 (471)
.+...|++++|.+.|++. +..| ....|+.+..+|.+.|++++|...+++..++.+. .
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 444556666666666655 1112 1356778888889999999998888888764321 1
Q ss_pred --CchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 427 --DGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 427 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
...+..++.+|...|++++|.+.|++..+.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 124677889999999999999999887654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.001 Score=51.98 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=54.4
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH----hcCCCCChhH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN----VYQIEPRFAH 363 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 363 (471)
...+..+...+...|++++|+..++++.+.. +-+...|..++.+|...|+.++|.+.|+++.. ..|+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3456677778888888888888888887763 44677788888888888888888888877643 3477777654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.36 E-value=0.00026 Score=53.45 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=46.5
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 377 LEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG-----------NVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 377 ~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
+++|.+.|++. .+.| +..+|..+..+|...| ++++|.+.|++..++.|.+...+..|...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------
Confidence 34555555555 4444 3456666666665443 46889999999999999776544444443
Q ss_pred HHHHHHHHHhhcCCC
Q 012101 444 EEVERIRAVMKHRNL 458 (471)
Q Consensus 444 ~~A~~~~~~m~~~~~ 458 (471)
.+|.+++.++.++|+
T Consensus 130 ~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 455666666655543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.33 E-value=0.00054 Score=57.34 Aligned_cols=126 Identities=8% Similarity=-0.028 Sum_probs=82.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHH
Q 012101 300 YAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~ 378 (471)
..+.|++++|+..+++..+.. +-|...+..+...++..|++++|.+.++...+. .|+. ..+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345788888888888888763 445677888888888888888888888888754 4553 33444444444444444
Q ss_pred HHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 012101 379 EARAMVEGM--PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA 429 (471)
Q Consensus 379 ~A~~~~~~m--~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 429 (471)
++..-.... ...| +...+......+...|+.++|.+.++++.+..|..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 433322221 1223 23344455567778899999999999888888766543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.0008 Score=46.29 Aligned_cols=71 Identities=17% Similarity=0.050 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM--------PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
+-.+...+.+.|++++|...|++. ...++ ..+++.+..++.+.|++++|...++++.+++|.++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345666677777777777777665 11223 457888889999999999999999999999988877666553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.23 E-value=9e-05 Score=56.07 Aligned_cols=88 Identities=14% Similarity=0.039 Sum_probs=61.9
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 372 GRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEK----------FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
.+.+.+++|.+.|+.. .+.| +..++..+..++.. .+.+++|+..|+++.+++|.++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3444556666666655 3344 34455555555543 3456889999999999999999999999999977
Q ss_pred CC-----------ChHHHHHHHHHhhcCCCc
Q 012101 440 RG-----------LWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 440 ~g-----------~~~~A~~~~~~m~~~~~~ 459 (471)
.| .+++|.+.|++..+..+.
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~ 118 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPD 118 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence 65 368899999888776543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.21 E-value=0.0001 Score=61.95 Aligned_cols=122 Identities=12% Similarity=-0.010 Sum_probs=83.2
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVKMG 412 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a 412 (471)
..+.|++++|+..+++..+.. +-+...+..+...|+..|++++|.+.++.. ...|+. ..+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 356799999999999998752 456688999999999999999999999999 667754 4555555554443333332
Q ss_pred HHHHHHHHhcC-CCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 413 EWVAKHLQELE-PWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 413 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
..-........ |.+...+...+..+.+.|+.++|.+.++++.+...
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 22111111111 21112344556678889999999999999876654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.15 E-value=0.0022 Score=48.71 Aligned_cols=90 Identities=11% Similarity=0.020 Sum_probs=57.2
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC----
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPR----------FAHYGCMVDLLGRAGLLEEARAMVEGM--------PMKAN---- 392 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~---- 392 (471)
+...|++++|++.|++..+...-.|+ ...|+.+..+|...|++++|.+.+++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 33445555555555555443222221 235666677777777777777666654 12222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 393 -VVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 393 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
...++.+..+|...|++++|...|++..++.+
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 23567788999999999999999999887654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.0001 Score=68.74 Aligned_cols=167 Identities=8% Similarity=-0.118 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHCCCCCCcchHHHHHHHH--hccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHh
Q 012101 102 PKKALDIYIFMSRAGVLPDCYTLPIVLKAS--CQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVF 179 (471)
Q Consensus 102 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 179 (471)
+..+.+.++...+....++..-....+..+ ...+.++.+...+....... +++...+..+...+.+.|+.+.|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 455667777766554444443333222222 12233444444443333221 344556677777888888888888877
Q ss_pred ccCCCCCc-chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC
Q 012101 180 DENPERKL-GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD 258 (471)
Q Consensus 180 ~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 258 (471)
.....++. .++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+. +... +|.
T Consensus 144 ~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra--l~~~-~~~ 219 (497)
T d1ya0a1 144 SSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRS--IAVK-FPF 219 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHH--HSSS-BCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHH--HhCC-CCC
Confidence 66544332 257778888888999999999999988763 445678999999999999999999999888 5444 345
Q ss_pred hhHHHHHHHHHHhcC
Q 012101 259 TLMLNSLIDMYGKCG 273 (471)
Q Consensus 259 ~~~~~~l~~~~~~~g 273 (471)
...+..|...+.+..
T Consensus 220 ~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 220 PAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 667777777766543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.0016 Score=44.74 Aligned_cols=69 Identities=7% Similarity=-0.168 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------chHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 393 VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD-------GAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 393 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
...+-.+...+.+.|++++|...|++..+..+.++ .++..++.+|.+.|++++|++.++++.+.++..+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~ 80 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence 34455678899999999999999999987653322 3688899999999999999999999988766543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.90 E-value=0.027 Score=39.49 Aligned_cols=141 Identities=7% Similarity=0.005 Sum_probs=98.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 012101 300 YAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEE 379 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 379 (471)
+...|..++..+++.+.... .+..-|+.+|.-....-+-+...+.++.+-+-+.+.| +++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 34568888888888887764 3566677777666666666777777777754443333 333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 380 ARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 380 A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
...-+-.++ .+....+..+.....+|+-+.-.++.+.+.+.+..+|.....++.+|.+-|...++-+++.+.-+.|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 245556667788888899999999998887777777888888999999999999999999999888874
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.37 Score=43.05 Aligned_cols=115 Identities=10% Similarity=-0.032 Sum_probs=61.5
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHH-HH-HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 304 GLANEALDCFHYMRESG-IRPNHV-TF-VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~-~~p~~~-~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.+.+.+..++....... ..++.. .. ..+.......+..+.+...+...... ..+.......+....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHH
Confidence 45667777776665542 222211 11 12222334455566666666665433 23444444445555566777777
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 381 RAMVEGMPMKA--NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 381 ~~~~~~m~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
...++.|...| ...-.-=+..++...|+.+.|...|..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 77777773332 122222244666777777777777777653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.45 Score=42.51 Aligned_cols=345 Identities=11% Similarity=-0.030 Sum_probs=162.0
Q ss_pred cCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHH
Q 012101 67 LNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSL 146 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 146 (471)
.+++......+...| .+...-.....+....|+.+.|...+..+-..|. .....+..+.. .
T Consensus 85 ~~~w~~~~~~~~~~p--~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~----------------~ 145 (450)
T d1qsaa1 85 REDWRGLLAFSPEKP--GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFS----------------V 145 (450)
T ss_dssp TTCHHHHHHHCCSCC--SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHH----------------H
T ss_pred ccCHHHHHHhccCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHH----------------H
Confidence 455666555553322 2333344566666677777777766666544432 12222333333 2
Q ss_pred HHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 012101 147 AVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMV 226 (471)
Q Consensus 147 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 226 (471)
+.+.| ..+...+-.-+......|+...|..+...+...........+..... ...+...... . .++.....
T Consensus 146 ~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~---~--~~~~~~~~ 216 (450)
T d1qsaa1 146 WRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART---T--GATDFTRQ 216 (450)
T ss_dssp HHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH---S--CCCHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc---C--CCChhhhH
Confidence 22222 22222333344445556667777777666654433334444443322 2222222111 1 22222222
Q ss_pred HHHHHHcC--cCCHHHHHHHHHHHHHhhcCCCCChhHHHHH----HHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHH
Q 012101 227 SVTSACGS--LGDLELALQVHKYVFQVKSKQKSDTLMLNSL----IDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIV 298 (471)
Q Consensus 227 ~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 298 (471)
.+..+..+ ..+.+.+..++... ...... +..-...+ .......+..+.+...+..... .+.....-.+.
T Consensus 217 ~~~~~l~rla~~d~~~a~~~l~~~--~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~ 293 (450)
T d1qsaa1 217 MAAVAFASVARQDAENARLMIPSL--AQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR 293 (450)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH--HHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHhh--hhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH
Confidence 22222222 24566666666655 222211 11111111 1122234455555555543322 23333333444
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
.....+++..+...++.|... ..-...-.--+..++...|+.+.|...|..+.. .++ -|..|... +.|..-
T Consensus 294 ~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~ 364 (450)
T d1qsaa1 294 MALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEY 364 (450)
T ss_dssp HHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCC
T ss_pred HHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCC
Confidence 455566777777777666432 111223333455666777777777777777742 233 23332211 122110
Q ss_pred HHHHHHHhCCCCCCH-HH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 379 EARAMVEGMPMKANV-VI---WGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 379 ~A~~~~~~m~~~p~~-~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
.. . .......+.. .. -..-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+....+..
T Consensus 365 ~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 365 EL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 00 0 0000111111 11 1123455668888888888888776532 34456677777888888888888777664
Q ss_pred c
Q 012101 455 H 455 (471)
Q Consensus 455 ~ 455 (471)
.
T Consensus 441 ~ 441 (450)
T d1qsaa1 441 L 441 (450)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.02 E-value=0.15 Score=36.78 Aligned_cols=50 Identities=4% Similarity=-0.102 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc----CCChHHHHHHHHHhhcCCC
Q 012101 407 GNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS----RGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 407 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 458 (471)
.|.++|.++|++..+.+. +.....|..+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g~--~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLND--QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccCc--chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 356667777777666553 3345556666654 3467777777777666554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.29 E-value=0.53 Score=33.59 Aligned_cols=111 Identities=9% Similarity=-0.140 Sum_probs=72.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHH
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR----AGLLEEA 380 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 380 (471)
++++|.++|++..+.|. +. ....+ +.....+.++|.+.+++..+. | +...+..|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~-~~--a~~~l--~~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MF--GCLSL--VSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TT--HHHHH--HTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCC-hh--hhhhh--ccccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 56788888888877762 22 22222 234456788888888887654 3 34444555555544 4578889
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 012101 381 RAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 381 ~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 424 (471)
.++|++.-..-+......|...|.. ..|.++|..++++..+.+.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9998888212245555566666654 4588999999999888774
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=0.069 Score=37.67 Aligned_cols=70 Identities=13% Similarity=-0.029 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 359 PRFAHYGCMVDLLGRAG---LLEEARAMVEGM-PMKA-NV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
|+..+--....++.+.. +.+++..+|++. ...| +. ..+..|.-+|.+.|++++|.+.++.+.+.+|.+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 44444334445555443 345677777776 3234 33 35566667778888888888888888888876653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.58 E-value=0.74 Score=32.08 Aligned_cols=61 Identities=7% Similarity=0.001 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHh
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
.+..+......|+-++-.++++.+.+.+ .|++.....+..+|.+.|...++.+++.+..+.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3444555666666666666666655533 555666666666777777777777777666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.88 E-value=1.2 Score=31.09 Aligned_cols=48 Identities=8% Similarity=0.042 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCCCC-chHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 410 KMGEWVAKHLQELEPWSD-GAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
++|+.+++.+.+.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+..
T Consensus 55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 445555555554444322 234445555555555555555555554433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.01 E-value=2.4 Score=27.83 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=40.8
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 379 EARAMVEGM---PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 379 ~A~~~~~~m---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
++.+-++.+ ..-|+.....+.++||.+.+|+..|.++|+.++..--.+...|-.+++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq 83 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344444444 667899999999999999999999999998887654334556665543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.97 E-value=5 Score=26.28 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
+.-++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.+.| ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4446677777777778899999999999999999999999999999976644 34556666554
|