Citrus Sinensis ID: 012154

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Protein Sequence
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIARALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHRPASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLTVRKEDPPTTPAPAQKVDSWTVFPPAILKDLPTVTAAAIQKEDTPTVTPAIQKQDCLTVASPVVQKENPPIVVASAVQKGYPPNSTAPSPQEILSQVEKRENTILNIEETEAACSLGQLKI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccEEEEcccccccccEEEEEEEccEEEccccccccHHHHHHHHHHHHHHHccccccccccHHHccccccccHHHHHHHHHHHccccccEEEEEccccccccEEEEEEEccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccEEEEEcccccccccEEEEEEEccEEEccccccccHHHHHHHHHHHHHHHHccccccccHcccccccccHHHHHHHHHHHHccccccEEEEEccccccccEEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccEEEEEcccccccccccccccccHccccccc
Coil and Loop (DISEMBL)
MYKNQLQELAQRscfnlpsytciregpdhaprfkatvnfngeifesphycsTLRQAEHSAAEVALSslshrgpspslaaRILDETGVYKNLLQEIAQRvgaplpqyttirsglghlpvFTGIVELAgiaftgepaknkKQAEKNAAMAAWTSLKQLAKEtassssepetndELEQITIARALLNYRLKEKMAMAStldspipfarkfpvqntrptspqpplattskilplfcpktasrhrpassganekpaqpqpygsegrvvrpqkfpaagaapyvpirqyrtscrgiappvtvrttvpcfsapphpppsalppqmmrapavriapsvtvrqavpvyaappvhrddsltvrkedppttpapaqkvdswtvfppailkdlptvTAAAiqkedtptvtpaiqkqdcltvaspvvqkenppIVVASAVqkgyppnstapspqeILSQVEKRENTILNIEETEAACSLGQLKI
Flexible Loop (DISEMBL)
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETassssepetndeleQITIARALLNYRLKEKMAMASTLDSPIPFARKFPVqntrptspqpplattskiLPLFCPKTASRhrpassganekpaqpqpYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPvyaappvhrddsltvrkedppttpapaqkvdswTVFPPAILKDLPTVTAAAIQKEDTPTVTPAIQKQDCLTVASPVVQKENPPIVVASAVQKGYppnstapspqeiLSQVEKRENTILNIEeteaacslgqlki
Low Complexity Region (SEG)
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPaknkkqaeknaamaaWTSLKQLAKETASSSSEPETNDELEQITIARALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHRPASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVpcfsapphpppsalppQMMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLTVRKEDPPTTPAPAQKVDSWTVFPPAILKDLPTVTAAAIQKEDTPTVTPAIQKQDCLTVASPVVQKENPPIVVASAVQKGYPPNSTAPSPQEILSQVEKRENTILNIEETEAACSLGQLKI
Disordered region (IsUnstruct)
***********RSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTL************************AARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFT********************************************ITIARALLNYRLKEK**************************************PLF**************************************AAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCF*************************SVTVRQAVPVYA***************************DSWTVFPPAILKDLPTVTAAAIQKEDTPTVTPAIQKQDCLTVASPVV******IVV************************************************
Disordered Region (DISOPRED)
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSS*****************TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG***********NAAMAAW***********************************************************************************************************************************************************************************************************************************************************************************************************************ACSLGQLKI
Disordered Region (DISEMBL)
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA***********MAAWTSLK******************LEQITIARALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKT************************GRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLTVR***********QKVDSWTVFPPAILKDLPTVTAAAIQKEDTPTVTPAIQKQDCLTVASPVVQKENPPIVVASAVQKGYPPNSTAPSPQEILSQVEKRENTILNIEETEAACSLGQLKI
Disordered Region (DISPRO)
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR*P*PSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL****************LEQITIARALLNYR***************************************************************************************APYVPIRQYRTSCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMM**************Q**************************************************************************************I*******KGYPPNSTAPSPQEILSQVEK**********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIARALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHRPASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLTVRKEDPPTTPAPAQKVDSWTVFPPAILKDLPTVTAAAIQKEDTPTVTPAIQKQDCLTVASPVVQKENPPIVVASAVQKGYPPNSTAPSPQEILSQVEKRENTILNIEETEAACSLGQLKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	470	2.2.26 [Sep-21-2011]
Q9SKN2	434	Double-stranded RNA-bindi	yes	no	0.795	0.861	0.660	1e-131
Q9AV50	514	Double-stranded RNA-bindi	yes	no	0.714	0.653	0.673	1e-115
Q0DKP4	593	Double-stranded RNA-bindi	no	no	0.387	0.306	0.740	4e-74
Q9LJF5	359	Double-stranded RNA-bindi	no	no	0.389	0.509	0.693	8e-72
Q8GY79	393	Double-stranded RNA-bindi	no	no	0.621	0.743	0.448	1e-69
B7E321	404	Double-stranded RNA-bindi	no	no	0.329	0.383	0.767	1e-67
Q8H1D4	355	Double-stranded RNA-bindi	no	no	0.312	0.414	0.470	2e-29
Q5N8Z0	441	Double-stranded RNA-bindi	no	no	0.340	0.362	0.447	3e-28
Q0IV63	473	Double-stranded RNA-bindi	no	no	0.342	0.340	0.371	2e-20
Q0IQN6	424	Double-stranded RNA-bindi	no	no	0.344	0.382	0.369	2e-20

>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1

 Score =  470 bits (1209), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/389 (66%), Positives = 292/389 (75%), Gaps = 15/389 (3%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL++LS+RGPS SLAARILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
           G VELAGI FTG+PAKNKKQAEKNAAMAAW+SLKQLAKET+SS  EPE  DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
           AL+NYR+KE +   S+  +P+PFA+KF +QN RPTSPQP  ATTS+ILP  CPK  SR  
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 241 PASSGANEKPAQPQPYGSEGRVV-RPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
            +S  A     +      E R   RPQ+  A    PYVP+RQ+R+ C G+APPVT+RT V
Sbjct: 241 RSSLAATSGIDRIMAAALESRSYQRPQQRFA--NPPYVPMRQFRSQCHGMAPPVTIRTAV 298

Query: 300 PCFSAPP----------HPPPSALPPQMMR-APAVRIAPSVTVRQAVPVYA-APPVHRDD 347
           P FSAPP            P S   P +MR AP VRIAP VT+R AVPV+A APPV    
Sbjct: 299 PVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVRIRT 358

Query: 348 SLTVRKEDPPTTPAPAQKVDSWTVFPPAI 376
           ++    E   T  +  Q+ +S  V P ++
Sbjct: 359 AVKPTVEAGETRISSVQEKESIPVLPDSL 387

Binds double-stranded RNA. May be involved in RNA-mediated silencing.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE=2 SV=1

 Score =  416 bits (1070), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/343 (67%), Positives = 270/343 (78%), Gaps = 7/343 (2%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLP+YTC+REGPDHAPRFKA VNFNGE FESP + +TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL++L+ RGPS SLAARILDETGVYKNLLQE+AQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61  AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
             VELAGI FTG+PAKNKKQAEKNAA AAW+SL+QL ++ ASSS+EPE+NDE EQI IAR
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASSSNEPESNDEQEQIRIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTS-PQPPLATTSKILPLFCPKTASRH 239
           ALLNYRLKEKMAMA+   +  PF +KFP+Q  R T+ PQ   ++ SKILPLF PK+ SR 
Sbjct: 181 ALLNYRLKEKMAMANNPHA-SPFPKKFPMQPERRTAFPQSSHSSYSKILPLFRPKSNSRS 239

Query: 240 RPASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
           RP S  A++  +Q     +E    R  +FPAA AAPYVP+  +R  C  +APPVTVRT++
Sbjct: 240 RPESPAASDAASQTPFRPTESPNPR-SRFPAAEAAPYVPVGHFRMPCHSMAPPVTVRTSI 298

Query: 300 PCFSAPPHPPPSA----LPPQMMRAPAVRIAPSVTVRQAVPVY 338
           P FSAPP PPP A    LPP M   P +R+A  V +R A P++
Sbjct: 299 PVFSAPPLPPPGARTQQLPPLMSHPPPIRMASPVRIRPAPPLF 341

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1

 Score =  279 bits (713), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 137/185 (74%), Positives = 152/185 (82%), Gaps = 3/185 (1%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGE FESP +CSTLR AEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL+ LS RGPS SLAA++LDETG+YKNLLQE A R G  LP YTTIRSG GH PVFT
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK--ETASSSSEPE-TNDELEQIT 177
             VELAG+ FTG P K KKQA+KNAAMAAW+ LKQL +  E +SSS  P+  +D+ EQI 
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHDDDDQEQII 180

Query: 178 IARAL 182
           +AR L
Sbjct: 181 VARTL 185

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=2 SV=1

 Score =  271 bits (693), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 152/189 (80%), Gaps = 6/189 (3%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGEIFESP YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVALS+LS +GPS SL AR+LDETG+YKNLLQE A R G  LP YT++RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
             VELAG++F GE AK KKQAEKNAA+AAW SL+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 174

Query: 181 ALLNYRLKE 189
            L  +R KE
Sbjct: 175 VLSRFRPKE 183

Binds double-stranded RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1

 Score =  264 bits (674), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 153/341 (44%), Positives = 195/341 (57%), Gaps = 49/341 (14%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YCSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEV+L+ LS R PS SL A+ILDETG+YKNLLQE A R G  LP YT++RSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
             VELAG+ FTGE AK KKQAEKNAA+AAW+SLK++       SS    ++E EQ  +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 173

Query: 181 ALLNYR--------------------------LKEKMAMASTLDSPIPFARKFPVQNTRP 214
            L  ++                          L E++   + L +    +      N   
Sbjct: 174 VLSRFKPKEVRRRETTNQWRRRTSQQDSNKDLLIERLRWINLLTNQASSSSSTSTPNQHK 233

Query: 215 TSPQPPL------ATTSKILPLFCPKTASRHRPASSGANEKPAQPQPYGSEGRVVR---- 264
            S    L        +SKILP        +++  SS   +     +   S+ +V      
Sbjct: 234 NSSFISLIPPPPPPKSSKILPFI-----QQYKDRSSQEAKTETATEMINSKAKVNETSTR 288

Query: 265 -PQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSA 304
             ++ P +    Y  +     +   +AP V +R+ +P F+A
Sbjct: 289 LSKQMPFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAA 329

Binds double-stranded RNA. May be involved in RNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp. japonica GN=DRB5 PE=2 SV=1

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/155 (76%), Positives = 131/155 (84%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKATV FNGE F+ P  C+TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL+ LS RGPS SL AR+LDETGVYKNLLQE A R G  LP YTT+RSG GH PVF+
Sbjct: 61  AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
             VELAG++F G+PAK KK AEKNAAMAAW+SLKQ
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana GN=DBR4 PE=1 SV=1

 Score =  130 bits (327), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 93/155 (60%), Gaps = 8/155 (5%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           +YK QLQ  A +    LP Y   REGP HAPRF+  V F G+ F+S  +  TL+ AEH+A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           A++A++SL+ + P     A        YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ 155
             VE AG  F+GE AK KK AE +AA  A+ S+K 
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKN 150

Double-stranded RNA-binding protein involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the trans-acting small interfering RNAs (ta-siRNAs) biogenesis by binding and assisting DICER-LIKE 4 (DCL4). Required for DCL4 activity. Required for the 21 nucleotide ta-siRNAs production of the TAS3 transcript in leaves but not in flowers. Plays an important role in silencing RNA of both DNA and RNA viruses. Involved with argonaute 7 (AGO7) and RDR6 in turnip crinkle virus (TCV) silencing. May not be directly involved in viral siRNA production. May stabilize the 21 nucleotide viral siRNAs and deliver them to the RISC complex. Targeted by the viral silencing suppressor (VSR) transactivator/viroplasmin (TAV) protein of the cauliflower mosaic virus (CaMV) that inactivates DRB4 function in RNA silencing. Probably not involved in the guide strand selection from RNA duplexes. Involved in leaf morphology through its function in ta-siRNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp. japonica GN=DRB1 PE=2 SV=1

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 97/163 (59%), Gaps = 3/163 (1%)

Query: 2   YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
           YK+QLQ  AQ+    LPSY  IREGP HA RFK+ V  +G+ FESP Y  T+++AE +AA
Sbjct: 87  YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146

Query: 62  EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTG 121
           ++AL SL     S   + ++  +   YKNLLQE+AQ+ G  LP Y+T   G   +P+F  
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203

Query: 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSS 164
            V     +F GEPA  KKQAE NAA  A+   +   K   SS+
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFEDRRKNALSST 246

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 93/167 (55%), Gaps = 6/167 (3%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           ++K++LQE AQ++    P Y   +EGP H P FK+TV  N   ++S       + AE SA
Sbjct: 33  VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92

Query: 61  AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
           AEVAL  +    P+    A I  + ETG+ KNLLQE AQ++   +P Y   +S  G  P 
Sbjct: 93  AEVALMEIVKSIPA---NANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148

Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSS 165
           F   VE+ GI + G  A+ KK AE  AA  A  +++  ++ +A+ ++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 195

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 6/168 (3%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           ++K++LQE AQ++    P Y   +EGP H P FK+TV  N   ++S       + AE SA
Sbjct: 33  VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92

Query: 61  AEVALSSLSHRGPSPSLAARI--LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPV 118
           AEVAL  +    P+    A I  + ETG+ KNLLQE AQ++   +P Y   +S  G  P 
Sbjct: 93  AEVALMEIVKSIPA---NANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148

Query: 119 FTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSE 166
           F   VE+ GI + G  A+ KK AE  AA  A  +++  ++ +A+ +++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATK 196

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
147853140	403	hypothetical protein VITISV_005501 [Viti	0.810	0.945	0.717	1e-154
357453939	408	Ribonuclease [Medicago truncatula] gi|35	0.748	0.862	0.752	1e-152
225435325	413	PREDICTED: double-stranded RNA-binding p	0.810	0.922	0.7	1e-152
356543448	411	PREDICTED: double-stranded RNA-binding p	0.774	0.885	0.729	1e-148
356547178	393	PREDICTED: double-stranded RNA-binding p	0.725	0.867	0.731	1e-145
359806420	401	uncharacterized protein LOC100812728 [Gl	0.763	0.895	0.735	1e-140
449443363	414	PREDICTED: double-stranded RNA-binding p	0.838	0.951	0.698	1e-140
449523610	414	PREDICTED: LOW QUALITY PROTEIN: double-s	0.840	0.954	0.686	1e-136
356539370	411	PREDICTED: double-stranded RNA-binding p	0.763	0.873	0.727	1e-135
297822435	436	dsRNA-binding protein 2 [Arabidopsis lyr	0.776	0.837	0.663	1e-130

>gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/400 (71%), Positives = 318/400 (79%), Gaps = 19/400 (4%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP+YC+TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL+SLS+RGPS SLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
           G VELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKE ASSSSE E NDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAASSSSETENNDELEQITIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
           ALLNYRLKEKMA+A++    + F +KFP+QN+R  SPQ P   TSKILPL C KT  R+R
Sbjct: 181 ALLNYRLKEKMAIANSPSGTLSFPKKFPIQNSRLFSPQLPPVATSKILPLICQKTPPRNR 240

Query: 241 PASSGANEKPAQ----------PQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIA 290
           P S  AN+ P Q           QP   + R VRPQ+FPAAGA PYVPIRQ+RT   GIA
Sbjct: 241 PPSPTANDDPRQQHQVKNPVPPSQPLALDVRAVRPQRFPAAGAVPYVPIRQFRTPYHGIA 300

Query: 291 PPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLT 350
           PPVT+R  VP FSA    PPS LPPQ++RAP +RIAP V VRQAVPV+AAPPV ++D L 
Sbjct: 301 PPVTIRNAVPVFSA----PPSGLPPQVIRAPHMRIAPPVCVRQAVPVFAAPPVRKEDPLV 356

Query: 351 VRKEDPPTTPAPAQKVDSWTVFPPAILKDLPTVTAAAIQK 390
           VRKEDP     P+    S     PA +++  + TA  +Q+
Sbjct: 357 VRKEDPSAASLPSLPTKS-----PAHVEETGSATANDLQE 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453939|ref|XP_003597250.1| Ribonuclease [Medicago truncatula] gi|355486298|gb|AES67501.1| Ribonuclease [Medicago truncatula]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/372 (75%), Positives = 309/372 (83%), Gaps = 20/372 (5%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL+SLSHRGPS SLAA+ILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
           GIVELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKETASSS+EPE NDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
           ALLNYRLKEKM+M S  ++ IPF +KF +QN RPTS Q P ATTSKILPL C KT  R+R
Sbjct: 181 ALLNYRLKEKMSM-SNPNARIPFQKKFQIQNIRPTSSQSP-ATTSKILPLICQKTGPRNR 238

Query: 241 PASSGANEKP----------------AQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRT 284
           P+S+  NE P                 QPQ    E RV RP +FPAAGA PYVPIRQ R 
Sbjct: 239 PSSATPNENPRSRHPQAAATSDKSILQQPQSSAIESRVTRPLRFPAAGAPPYVPIRQMR- 297

Query: 285 SCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAPPVH 344
            C GIAP V+VRT +P FSAPP PPP+++  Q++RAP VRIAP V++RQAVPV+AAPP+ 
Sbjct: 298 PCHGIAPAVSVRTVIPVFSAPPLPPPTSV-HQIIRAPPVRIAPPVSIRQAVPVFAAPPLR 356

Query: 345 RDDSLTVRKEDP 356
           +D+   ++K+ P
Sbjct: 357 KDEPAPIQKDLP 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435325|ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis vinifera]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/410 (70%), Positives = 318/410 (77%), Gaps = 29/410 (7%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP+YC+TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL+SLS+RGPS SLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
           G VELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKE A+SSSE E NDELEQITIAR
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAANSSSETENNDELEQITIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
           ALLNYRLKEKMA+A++    + F +KFP+QN+R  SPQ P   TSKILPL C KT  R+R
Sbjct: 181 ALLNYRLKEKMAIANSPSGTLSFPKKFPIQNSRLFSPQLPPVATSKILPLICQKTPPRNR 240

Query: 241 PASSGAN-------------------EKPAQP-QPYGSEGRVVRPQKFPAAGAAPYVPIR 280
           P S  AN                   E P  P QP   + R VRPQ+FPAAGA PYVPIR
Sbjct: 241 PPSPTANDGSMPSSQPRSRPTSTTSSENPVPPSQPLALDVRAVRPQRFPAAGAVPYVPIR 300

Query: 281 QYRTSCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAA 340
           Q+RT   GIAPPVT+R  VP FSA    PPS LPPQ++RAP +RIAP V VRQAVPV+AA
Sbjct: 301 QFRTPYHGIAPPVTIRNAVPVFSA----PPSGLPPQVIRAPHMRIAPPVCVRQAVPVFAA 356

Query: 341 PPVHRDDSLTVRKEDPPTTPAPAQKVDSWTVFPPAILKDLPTVTAAAIQK 390
           PPV ++D L VRKEDP     P+    S     PA +++  + TA  +Q+
Sbjct: 357 PPVRKEDPLVVRKEDPSAASLPSLPTKS-----PAHVEETGSATANDLQE 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543448|ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/381 (72%), Positives = 310/381 (81%), Gaps = 17/381 (4%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSY CIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL+SLSHRGPS SLAA+ILDETGVYKNLLQEIAQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61  AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
           GIVELAGI FTGEPAKNKKQAEKNAAMAAW++LKQLAKETASSS+EPE NDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDELEQITIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
           ALLNYRLKEKMAM S  ++P+ F ++F +QN RP S QPP AT+SKILPL C KTA R +
Sbjct: 181 ALLNYRLKEKMAM-SNPNAPVSFHKRFQIQNPRPISSQPPPATSSKILPLICQKTAPRSK 239

Query: 241 PA-SSGANEKPAQ---------------PQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRT 284
           P+ ++ ANE P                 PQ    E R  RP KF AAGAAPYVPIRQ R 
Sbjct: 240 PSLATTANESPRSRHPQAAMTSDNSTLPPQSCSLESRATRPLKFRAAGAAPYVPIRQMRP 299

Query: 285 SCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAPPVH 344
           SC+ IAPPVT+RT VP F+ PP PPP+++P   +RAP VR+AP VT+RQAVPVYAAPP  
Sbjct: 300 SCQRIAPPVTIRTVVPAFATPPCPPPASVPHPAIRAPPVRVAPPVTIRQAVPVYAAPPSK 359

Query: 345 RDDSLTVRKEDPPTTPAPAQK 365
           +++   V+++D PT  A  Q+
Sbjct: 360 KNEPAAVQQKDLPTAGASGQQ 380

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547178|ref|XP_003541993.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/365 (73%), Positives = 296/365 (81%), Gaps = 24/365 (6%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFE+PHYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AE AL+SLSHRGPS SLAA+ILDETGVYKNLLQEIAQRVGAPLP YTT RSGLGHLPVFT
Sbjct: 61  AEAALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
           GIVELAGI FTGEPAKNKKQAEKNAAMAAW++LKQLAKETASSS+EPE NDE+EQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDEVEQITIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
           ALLNYRLKEKM M S  ++P+PF  +F +QN RP S QPP AT+SKILPL C KTA R +
Sbjct: 181 ALLNYRLKEKMTM-SNPNAPLPFHERFQIQNPRPISSQPPPATSSKILPLICQKTAPRSK 239

Query: 241 P--ASSGANEKPAQPQPYGS-----------------EGRVVRPQKFPAAGAAPYVPIRQ 281
           P  A++  NE P    P  +                 E R  RP KFPAAGAAPYVPIRQ
Sbjct: 240 PSLATTTTNESPGSRHPQAAVAVTSDNSNLPQQSCSLECRATRPLKFPAAGAAPYVPIRQ 299

Query: 282 YRTSCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAP 341
            R SC+ IAPPVT+RT VP F+A    PP+++P  ++RAP VR+AP VT+RQAVP+YAAP
Sbjct: 300 MRPSCQRIAPPVTIRTVVPAFAA----PPASVPHPVIRAPPVRVAPPVTIRQAVPLYAAP 355

Query: 342 PVHRD 346
              +D
Sbjct: 356 KQQKD 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806420|ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max] gi|255644888|gb|ACU22944.1| unknown [Glycine max]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/371 (73%), Positives = 310/371 (83%), Gaps = 12/371 (3%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL+SLS+R PS SLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
           G VELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKETA SS+EPE NDELEQITIAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTA--SR 238
           ALLNYRLKEK++M+++ ++P+PF +KF +QN RPTSPQPP A TSKILPL C K A  SR
Sbjct: 181 ALLNYRLKEKISMSNS-NAPVPFPKKFQIQNPRPTSPQPPPAATSKILPLICQKAAPRSR 239

Query: 239 HRPASSGAN---EKPAQPQPYGS-EGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVT 294
           H   +S A    +  A PQ   + E R +R  KFPAAGAAPYVPIRQ R  C+G+APPVT
Sbjct: 240 HLVGASPARASCDNSAMPQLSATPESRGIRRPKFPAAGAAPYVPIRQMR-PCQGMAPPVT 298

Query: 295 VRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAA--PPVHRDDSLTVR 352
           +RT +P FS PP    +A+  Q++RAP VR+AP VT+RQAVPV+A   PP+ +D+ + + 
Sbjct: 299 IRTAIPVFSPPPA--AAAVSHQVLRAPHVRVAPPVTIRQAVPVFATPPPPIRKDEPVPIP 356

Query: 353 KEDPPTTPAPA 363
           K++PPT  AP+
Sbjct: 357 KDEPPTISAPS 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443363|ref|XP_004139447.1| PREDICTED: double-stranded RNA-binding protein 2-like [Cucumis sativus]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/398 (69%), Positives = 315/398 (79%), Gaps = 4/398 (1%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL++LS+RGP  SLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
           GIVELAGI FTGEPAKNKKQAEKNAAMAAW++LKQLAKE+ASSSSEPE NDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
           ALLNYR KEK+AM S  ++ IPF +K  +Q  RPTSPQ P A TSKILPL C K A R R
Sbjct: 181 ALLNYRQKEKLAM-SNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLICQKAAPRSR 239

Query: 241 PASSGANEKPA-QPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
            A   AN+ P  Q Q    EG   RPQKF A  A  Y+P++Q+RTSC GIAPPVT+RT +
Sbjct: 240 -APFSANKIPIPQSQTPALEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAM 298

Query: 300 PCFSAPPHPPPSALPP-QMMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLTVRKEDPPT 358
           P FSAPP P PS LPP Q++R P +RIAP V++RQA+PV+AAPPV +++   V+KE+ P 
Sbjct: 299 PVFSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPPVRKENPPVVKKEECPA 358

Query: 359 TPAPAQKVDSWTVFPPAILKDLPTVTAAAIQKEDTPTV 396
             AP +   + +      +   PTV + A  ++ T TV
Sbjct: 359 PAAPKEDPPALSAPVTVTVPSPPTVVSTAEVEQATFTV 396

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523610|ref|XP_004168816.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein 2-like [Cucumis sativus]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/399 (68%), Positives = 315/399 (78%), Gaps = 4/399 (1%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFE P YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL++LS+RGP  SLAARILDETGVYKNLLQEIAQRVGAPLPQYTT RSGLGHLPVFT
Sbjct: 61  AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
           GIVELAGI FTGEPAKNKKQAEKNAAMAAW++LKQLAKE+ASSSSEPE NDELEQITIAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSSEPENNDELEQITIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
           ALLNYR KEK+AM S  ++ IPF +K  +Q  RPTSPQ P A TSKILPL C +  S  +
Sbjct: 181 ALLNYRQKEKLAM-SNPNATIPFHKKLQIQTPRPTSPQRPPAPTSKILPLIC-QKXSSSK 238

Query: 241 PASSGANEKPA-QPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
            +S  +N+ P  Q Q    EG   RPQKF A  A  Y+P++Q+RTSC GIAPPVT+RT +
Sbjct: 239 QSSIFSNKIPIPQSQTPALEGSGPRPQKFSAGTALSYIPVQQFRTSCHGIAPPVTIRTAM 298

Query: 300 PCFSAPPHPPPSALPP-QMMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLTVRKEDPPT 358
           P FSAPP P PS LPP Q++R P +RIAP V++RQA+PV+AAPPV +++   V+KE+ P 
Sbjct: 299 PVFSAPPLPQPSKLPPQQVIRVPPIRIAPPVSIRQAIPVFAAPPVRKENPPVVKKEECPA 358

Query: 359 TPAPAQKVDSWTVFPPAILKDLPTVTAAAIQKEDTPTVT 397
             AP +   + +      +   PTV + A  ++ T TV 
Sbjct: 359 PAAPKEDPPALSAPVTVTVPSPPTVVSTAEVEQATFTVV 397

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539370|ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 277/381 (72%), Positives = 310/381 (81%), Gaps = 22/381 (5%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL+SLS+R PS SLAARILDETGVYKNLLQEIAQRVGAPLPQY T RSGLGHLPVFT
Sbjct: 61  AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
           G VELAGI FTGEPAKNKKQAEKNAAMAAW+SLKQLAKETA SS+EPE NDELEQITIAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
           ALLNYRLKEK++M+++ ++P+PF +KF +QN RPTSPQPP ATTSKILPL C K A R R
Sbjct: 181 ALLNYRLKEKISMSNS-NAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSR 239

Query: 241 --------PASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPP 292
                   PASS  +  P  P    S G  +R  KFPAAGAAPYVPIRQ R  C+G+APP
Sbjct: 240 HLVAASPAPASSDNSVMPQLPATPDSRG--IRRPKFPAAGAAPYVPIRQMR-PCQGMAPP 296

Query: 293 VTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAPSVTVRQAVPVYAAP----------P 342
           VT+RT +P FS PP P  +A+  Q++RAP VR+AP VT+RQAVPV+AAP          P
Sbjct: 297 VTIRTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVP 356

Query: 343 VHRDDSLTVRKEDPPTTPAPA 363
           + +D+ + V K+D PT  AP+
Sbjct: 357 IPKDEPVAVPKDDSPTISAPS 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata] gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 256/386 (66%), Positives = 287/386 (74%), Gaps = 21/386 (5%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP YCSTLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
           AEVAL++LS+RGPS SLA+RILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLASRILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIAR 180
           G VELAGI FTG+PAKNKKQAEKNAAMAAW+SLKQLAKET+SS  EPE  DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKT---AS 237
           AL+NYR+KE +   S+  +P+PFA+KF +QN RPTSPQP  ATTS+ILP  CPK    +S
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNPRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 238 RHRPASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRT 297
           R   A+SG +   A      S  R  +    P   A PYVP+R  R+ C G+APPVT+RT
Sbjct: 241 RSLAATSGIDRIMAAALESRSYQRPQQRFANPGTAAQPYVPMRHLRSPCHGMAPPVTIRT 300

Query: 298 TVPCFSAPP----------HPPPSALPPQMMR-APAVRIAPSVTVRQAVPVYA-APPVHR 345
            VP FSAPP              S   P +MR AP VRIAP VT+R AVPV+A APPV  
Sbjct: 301 AVPVFSAPPMPPPPCTNSTQLSSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVR- 359

Query: 346 DDSLTVRKEDPPTTPAPAQKVDSWTV 371
                +RK D  TT  P  +V    V
Sbjct: 360 -----IRKVDIQTTVKPTVEVGETRV 380

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
TAIR|locus:2057491	434	DRB2 "dsRNA-binding protein 2"	0.795	0.861	0.598	1.8e-110
TAIR|locus:2163016	393	DRB5 "dsRNA-binding protein 5"	0.387	0.463	0.629	4.9e-64
TAIR|locus:2829928	359	DRB3 "dsRNA-binding protein 3"	0.695	0.910	0.414	6.4e-60
TAIR|locus:2081620	355	DRB4 "double-stranded-RNA-bind	0.404	0.535	0.356	4.2e-25
UNIPROTKB|Q0IQN6	424	DRB8 "Double-stranded RNA-bind	0.274	0.304	0.390	4.2e-15
TAIR|locus:2024407	419	HYL1 "HYPONASTIC LEAVES 1" [Ar	0.278	0.312	0.380	1.9e-14
UNIPROTKB|G3MYM8	1077	G3MYM8 "Uncharacterized protei	0.580	0.253	0.233	0.00019
TAIR|locus:4010713767	1480	AT3G22142 "AT3G22142" [Arabido	0.474	0.150	0.248	0.00044
WB|WBGene00045239	559	Y49E10.29 [Caenorhabditis eleg	0.597	0.502	0.238	0.0006

TAIR|locus:2057491 DRB2 "dsRNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
 Identities = 233/389 (59%), Positives = 268/389 (68%)

Query:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
             MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP YCSTLRQAEHSA
Sbjct:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query:    61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
             AEVAL++LS+RGPS SLAARILDETGVYKNLLQEIAQRVGAPLP+YTT RSGLGH PVFT
Sbjct:    61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query:   121 GIVELAGIAFTGEPXXXXXXXXXXXXXXXWTSLKQLAKETASSSSEPETNDELEQITIAR 180
             G VELAGI FTG+P               W+SLKQLAKET+SS  EPE  DELEQ+ IAR
Sbjct:   121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query:   181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
             AL+NYR+KE +   S+  +P+PFA+KF +QN RPTSPQP  ATTS+ILP  CPK  SR  
Sbjct:   181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query:   241 PASSGANEKPAQPQPYGSEGRVV-RPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTV 299
              +S  A     +      E R   RPQ+  A    PYVP+RQ+R+ C G+APPVT+RT V
Sbjct:   241 RSSLAATSGIDRIMAAALESRSYQRPQQRFAN--PPYVPMRQFRSQCHGMAPPVTIRTAV 298

Query:   300 XXXXX----------XXXXXXXXXXXQMMR-APAVRIAPSVTVRQAVPVYA-APPVHRDD 347
                                        +MR AP VRIAP VT+R AVPV+A APPV    
Sbjct:   299 PVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFASAPPVRIRT 358

Query:   348 SLTVRKEDPPTTPAPAQKVDSWTVFPPAI 376
             ++    E   T  +  Q+ +S  V P ++
Sbjct:   359 AVKPTVEAGETRISSVQEKESIPVLPDSL 387

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2163016 DRB5 "dsRNA-binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 4.9e-64, Sum P(3) = 4.9e-64
 Identities = 119/189 (62%), Positives = 137/189 (72%)

Query:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
             MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YCSTLRQAEH+A
Sbjct:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query:    61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
             AEV+L+ LS R PS SL A+ILDETG+YKNLLQE A R G  LP YT++RSG  H P F+
Sbjct:    61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query:   121 GIVELAGIAFTGEPXXXXXXXXXXXXXXXWTSLKQLAKETASSSSEPETNDELEQITIAR 180
               VELAG+ FTGE                W+SLK+++    S  S+ E   E EQ  +AR
Sbjct:   121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMS----SLDSQDE---EKEQEAVAR 173

Query:   181 ALLNYRLKE 189
              L  ++ KE
Sbjct:   174 VLSRFKPKE 182

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2829928 DRB3 "dsRNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 143/345 (41%), Positives = 190/345 (55%)

Query:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
             MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGEIFESP YCSTLRQAEHSA
Sbjct:     1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query:    61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
             AEVALS+LS +GPS SL AR+LDETG+YKNLLQE A R G  LP YT++RSG GH+P F+
Sbjct:    61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query:   121 GIVELAGIAFTGEPXXXXXXXXXXXXXXXWTSLKQLAKETASSSSEPETNDELEQITIAR 180
               VELAG++F GE                W SL+++ +       +P   +E EQ  +AR
Sbjct:   121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 174

Query:   181 ALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHR 240
              L  +R KE          P    R+  ++  R    Q    TT+    L C K  S + 
Sbjct:   175 VLSRFRPKEVKRR-----EPNQSRRRTVIRTIR----QNTTTTTTTTGDLLCEKLRSINL 225

Query:   241 PASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVX 300
               +  ++  P   + + S   + + Q    +         + + S     P + ++T+  
Sbjct:   226 YTNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDDPKPEMRIKTSSP 285

Query:   301 XXXXXXXXXXXXXXXQMMRAPAV---RIAPSVTVRQAVPVYAAPP 342
                                +  +   ++AP+V +R  +PV +APP
Sbjct:   286 SPLSSSVERNCYSKLLPFPSFVLNHQKLAPAVHIRSVIPVCSAPP 330

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2081620 DRB4 "double-stranded-RNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 4.2e-25, P = 4.2e-25
 Identities = 72/202 (35%), Positives = 105/202 (51%)

Query:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
             +YK QLQ  A +    LP Y   REGP HAPRF+  V F G+ F+S  +  TL+ AEH+A
Sbjct:     4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query:    61 AEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT 120
             A++A++SL+ + P        +D    YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct:    64 AKIAVASLTPQSPEG------IDVA--YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115

Query:   121 GIVELAGIAFTGEPXXXXXXXXXXXXXXXWTSLKQ-LAKETASSSSEPETNDELEQ-ITI 178
               VE AG  F+GE                + S+K   + +T S +   E  +++   +  
Sbjct:   116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPSERQEDVNSNVKS 175

Query:   179 ARALLNYRLKEKMAMASTLDSP 200
             +   ++ +   K+ M  T D+P
Sbjct:   176 SPQEIHSQPSSKVVM--TPDTP 195

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0060145 "viral gene silencing in virus induced gene silencing" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0051607 "defense response to virus" evidence=RCA

UNIPROTKB|Q0IQN6 DRB8 "Double-stranded RNA-binding protein 8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 217 (81.4 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 52/133 (39%), Positives = 76/133 (57%)

Query:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFES-PHYCSTLRQAEHS 59
             ++K++LQE AQ++    P Y   +EGP H P FK+TV  N   ++S P + +  + AE S
Sbjct:    33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91

Query:    60 AAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVF 119
             AAEVAL  +    P+ +    +  ETG+ KNLLQE AQ++   +P Y   +S  G  P F
Sbjct:    92 AAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149

Query:   120 TGIVELAGIAFTG 132
                VE+ GI + G
Sbjct:   150 ICTVEIGGIQYIG 162

GO:0003725 "double-stranded RNA binding" evidence=IDA

TAIR|locus:2024407 HYL1 "HYPONASTIC LEAVES 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 51/134 (38%), Positives = 77/134 (57%)

Query:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFES-PHYCSTLRQAEHS 59
             ++K++LQE AQ+     P Y  ++EGP H   F++TV  +G  + S P + +  + AE S
Sbjct:    15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNR-KAAEQS 73

Query:    60 AAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPV 118
             AAEVAL  L+         ++ + ETG+ KNLLQE AQ++   +P Y   +   LG +  
Sbjct:    74 AAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 133

Query:   119 FTGIVELAGIAFTG 132
             FT  VE+ GI +TG
Sbjct:   134 FTCTVEIGGIKYTG 147

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IMP

GO:0031054 "pre-miRNA processing" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0015030 "Cajal body" evidence=IDA

GO:0035198 "miRNA binding" evidence=IDA

GO:0010445 "nuclear dicing body" evidence=IDA

GO:0051607 "defense response to virus" evidence=RCA

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010589 "leaf proximal/distal pattern formation" evidence=IMP

UNIPROTKB|G3MYM8 G3MYM8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 127 (49.8 bits), Expect = 0.00019, P = 0.00019
 Identities = 69/295 (23%), Positives = 97/295 (32%)

Query:   158 KETASSSSEPETNDELEQITIARALLNYRLKEKMAM-----ASTLDSPIPFARKFPVQNT 212
             KETA ++ EPE   +  + T  +       KE         A T   P P   K P    
Sbjct:   378 KETAPTTKEPEPTTKEPEPTTPKQPAPTTPKEPAPTTPKETAPTTKEPAPTTPKEPA--- 434

Query:   213 RPTSPQPPLATTSKILPLFCPKTASRHRPASSGANEKPAQPQPYGSEGRVVRPQKFPAAG 272
              PT+P+ P  TT+K      PK  +   P    +   P +P P   +       K PA  
Sbjct:   435 -PTTPKEPAPTTTKEPAPTTPKEPAPTTPKEPESPTTPKEPAPTTPKEPTPTTPKEPAPT 493

Query:   273 A----APYVPIRQYRTSCRGIAPPVTVRTTVXXXXXXXXXXXXXXXXQMMRAPAVRIAPS 328
                  AP  P     T+ +  AP  T +                      + PA  I P 
Sbjct:   494 TPKEPAPTTPKEPTPTTPKEPAPTTTPKEPAPTTKEPEPTTKEPAPTTTTKEPAPTI-PK 552

Query:   329 VTVRQAVPVYAAPPVHRDDSLTVRKEDP-PTTPAPAQKVDSWTVFPPAILKDLPTVTAAA 387
                    P   AP  H++ + T   ++P PT+P            P +  +  PT T   
Sbjct:   553 EPA-PTTPKEPAPTTHKEPTPTTTPKEPAPTSPKEPAPTSPKEPAPTSPKEPAPTTTPKE 611

Query:   388 IQKEDTPTVTPAIQKQDCLTVASPVVQKENPPIVVASAVQKGYPPNSTAPS-PQE 441
                 D     PA  K+      +P   KE  P            P   AP+ P+E
Sbjct:   612 PAPTDPKEPAPAEPKEP-----APTSSKEPAPTTTTKEPAPTTTPKEPAPTDPKE 661

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

TAIR|locus:4010713767 AT3G22142 "AT3G22142" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 0.00044, P = 0.00044
 Identities = 60/241 (24%), Positives = 80/241 (33%)

Query:   200 PIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHRPASSGANEKPAQPQPYGSE 259
             P P   K P  N  P++PQPP        P   P  AS   P ++   + P    P  ++
Sbjct:   169 PPPSTPKPPTTNPPPSTPQPPTHKPPPCTPT--PPVASP--PMATPPTQMPPIATPPIAK 224

Query:   260 GRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVXXXXXXXXXXXXXXXXQMMR 319
               V  P       A P + I    T      PP+     +                  + 
Sbjct:   225 SPVATPPIATPPTATPPITIPPVATPPI-TTPPIANPPIIMPPIATPPVAAPPITNPPIS 283

Query:   320 APAVRIAPSVTVRQAVPVYAAPPVHRDDSLTVRKEDPPTTPAPAQKVDSWTVFPPAILKD 379
              P V   P+ T   A P  A PP+    + T     PP T  P  K       PP  +  
Sbjct:   284 KPPVTTPPTTTPPIAKPPIATPPISTPPAATPPAATPPITTLPPAK-------PPVAISP 336

Query:   380 L--PTVTAAAIQKEDTP-TVTPAIQKQDCLTVASPVVQKENPPIVVASAVQKGYPPNSTA 436
             +  P VT  A     TP T TP +      T  +       PPI   S      PP +T+
Sbjct:   337 IVTPPVTPIAQPPVATPPTATPPVATPPIATPPTSKSPISTPPI---SESPVATPPTATS 393

Query:   437 P 437
             P
Sbjct:   394 P 394

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IEA

WB|WBGene00045239 Y49E10.29 [Caenorhabditis elegans (taxid:6239)]

 Score = 119 (46.9 bits), Expect = 0.00060, P = 0.00060
 Identities = 72/302 (23%), Positives = 104/302 (34%)

Query:   167 PETNDELEQITIARALLNYRLKEKMAMASTLDSPIPFARKFPVQNTRPTSPQPPLATTSK 226
             P     + Q  +A+     + ++  A      +P P  +  P    +P   QP +    K
Sbjct:   191 PPPQQPVVQAPVAQQAPPSQPQQAQAQPVVQQAP-PVQQASPKPVAQPVQQQPVVQAPPK 249

Query:   227 ILPLFCPKTASRHRPASSGANEKPAQPQPYGSEGRVVRPQKFPAAGAAPYVPIRQYRTSC 286
              +    P       P    A  +P Q  P  +   VV+    P   A P  P+ Q     
Sbjct:   250 PIVQQAPVVQQAPPPKQQQAQAQPVQQPP--NPAPVVQQASAPVQQAPPK-PVPQQTPPV 306

Query:   287 RGIAPPVTVR---TTVXXXXXXXXXXXXXXXXQMMRAPAVRIAPSVTVRQAV--PVYAAP 341
             +   P   V+   T                  Q    PAV+ A +  V+QA   PV  AP
Sbjct:   307 QQAPPKPAVQQAPTRAAPAPPKPAPQQAPPVQQNPPKPAVQQAQAPVVQQAPAPPVQQAP 366

Query:   342 PVHRDDSLTVRKEDPPTTPAPAQKVDSW--TVFPPAILKDLPTVTAAAIQKEDTPTVTPA 399
             P          +++PP  PA  Q   S   T  PP   K  P       Q    PT +PA
Sbjct:   367 PKPTPQQAPPVRQNPPM-PAVQQAPSSQQATQAPP---KPAPQQAPPVQQNPPKPTPSPA 422

Query:   400 IQKQDCLTVASPVVQKEN--PPIVVASAVQKGYPPNSTAPSPQEILSQVEKRENTILNIE 457
                Q     A PV Q++   PP   ++ VQ    P   A S   I+ Q    +   ++ E
Sbjct:   423 PPAQK----AQPVTQQQASAPPTSPSAPVQAPNTPTQKASSQDPIVQQDPPPKEPSISSE 478

Query:   458 ET 459
              T
Sbjct:   479 PT 480


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      470       439   0.00089  118 3  11 23  0.44    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  238 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  44.62u 0.22s 44.84t   Elapsed:  00:00:02
  Total cpu time:  44.62u 0.22s 44.84t   Elapsed:  00:00:02
  Start:  Thu May  9 16:33:12 2013   End:  Thu May  9 16:33:14 2013

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SKN2	DRB2_ARATH	No assigned EC number	0.6606	0.7957	0.8617	yes	no
Q9AV50	DRB6_ORYSJ	No assigned EC number	0.6734	0.7148	0.6536	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024541001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (385 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	470
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	8e-17
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	7e-15
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	9e-15
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	1e-13
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	6e-13
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	1e-12
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	1e-12
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	2e-12
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	5e-12
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	2e-10
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	5e-10
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	1e-09
PRK12371	235	PRK12371, PRK12371, ribonuclease III; Reviewed	1e-06
PRK12371	235	PRK12371, PRK12371, ribonuclease III; Reviewed	6e-05
PHA03103	183	PHA03103, PHA03103, double-strand RNA-binding prot	3e-04
TIGR04238	201	TIGR04238, seadorna_dsRNA, seadornavirus double-st	0.001
TIGR04238	201	TIGR04238, seadorna_dsRNA, seadornavirus double-st	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.004

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 74.2 bits (183), Expect = 8e-17
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 2  YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           K+ LQELAQ+    LP Y  +  EGPDHAPRF   V   G+I       S+ ++A+ +A
Sbjct: 2  PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEG-EGSSKKEAKQNA 60

Query: 61 AEVALSSL 68
          AE AL  L
Sbjct: 61 AEAALRKL 68

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 68.9 bits (169), Expect = 7e-15
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
           K+ LQEL Q+     P      EGP H+P F  TV  NG+ + +    S+ ++A+  AA
Sbjct: 1  PKSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTG-TGSSKKEAKQLAA 59

Query: 62 EVALSSL 68
          E AL  L
Sbjct: 60 EKALQKL 66

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 68.5 bits (168), Expect = 9e-15
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
            K+LLQE+AQ+ G PLP+Y  +   G  H P FT  V + G         +KK+A++NAA
Sbjct: 2   PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAA 61

Query: 147 MAAWTSL 153
            AA   L
Sbjct: 62  EAALRKL 68

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 2  YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           K+ LQELAQ+     P Y  +  EGPDHAPRF  TV   G+        S+ ++A+  A
Sbjct: 1  PKSLLQELAQKRKLP-PEYELVKEEGPDHAPRFTVTVKVGGKRTGEG-EGSSKKEAKQRA 58

Query: 61 AEVALSSL 68
          AE AL SL
Sbjct: 59 AEAALRSL 66

Length = 67

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 67.8 bits (167), Expect = 6e-13
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAG-IAFTGEPAKNKKQAEKNA 145
           YK  LQE+ Q  G PLP+Y  ++  G  H   FT  V + G     G    +KK+AE+ A
Sbjct: 160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGT-GSSKKEAEQAA 218

Query: 146 AMAAWTSLKQL 156
           A  A   LK+ 
Sbjct: 219 AKQALKKLKEK 229

Length = 229

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
            K+LLQE+ Q+ G   P       G  H P FT  V + G  +      +KK+A++ AA 
Sbjct: 1   PKSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGTGSSKKEAKQLAAE 60

Query: 148 AAWTSL 153
            A   L
Sbjct: 61  KALQKL 66

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
            K+LLQE+AQ+   P P+Y  +   G  H P FT  V++ G         +KK+A++ AA
Sbjct: 1   PKSLLQELAQKRKLP-PEYELVKEEGPDHAPRFTVTVKVGGKRTGEGEGSSKKEAKQRAA 59

Query: 147 MAAWTSLK 154
            AA  SLK
Sbjct: 60  EAALRSLK 67

Length = 67

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAG-IAFTGEPAKNKKQAEKNA 145
           YK  LQE AQ  G PLP+Y  I   G  H   FT  V + G     G+  K+KK+AE+NA
Sbjct: 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGK-GKSKKEAEQNA 212

Query: 146 AMAAWTSL 153
           A AA   L
Sbjct: 213 AKAALEKL 220

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           YK  LQE AQ     LP Y  I  EGPDH   F   V+ NGE +       + ++AE +A
Sbjct: 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEG-KGKSKKEAEQNA 212

Query: 61  AEVALSSL 68
           A+ AL  L
Sbjct: 213 AKAALEKL 220

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 60.5 bits (148), Expect = 2e-10
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 2   YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYC----STLRQA 56
           YK +LQEL Q     LP Y  ++E GP H   F   V  NG+            S+ ++A
Sbjct: 160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKE-----LGEGTGSSKKEA 214

Query: 57  EHSAAEVALSSLSHR 71
           E +AA+ AL  L  +
Sbjct: 215 EQAAAKQALKKLKEK 229

Length = 229

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
            K +LQEL Q     LP Y  +  EGP H   F   V   G+   +     + ++AE +A
Sbjct: 163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTG-KGRSKKEAEQAA 221

Query: 61  AEVALSSLSHRGP 73
           AE AL  L  + P
Sbjct: 222 AEQALKKLGVKEP 234

Length = 235

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAG-IAFTGEPAKNKKQAEKNA 145
            K  LQE+ Q  G  LP+Y  +   G  H   FT  V + G    TG+  ++KK+AE+ A
Sbjct: 163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGK-GRSKKEAEQAA 221

Query: 146 AMAAWTSLK 154
           A  A   L 
Sbjct: 222 AEQALKKLG 230

Length = 235

>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 89  KNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIA-FTGEPAKNKKQAEKNAA 146
           K  LQE A       P Y    RSG  H P FT  VE+ G A  TGE  ++K+ AE+ AA
Sbjct: 164 KTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGE-GRSKRAAEQVAA 222

Query: 147 MA 148
             
Sbjct: 223 EK 224

Length = 235

>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 3   KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
           K +LQE A       P Y    R GPDH PRF   V   G   E+    S  R AE  AA
Sbjct: 164 KTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSK-RAAEQVAA 222

Query: 62  EVAL 65
           E  L
Sbjct: 223 EKML 226

Length = 235

>gnl|CDD|222987 PHA03103, PHA03103, double-strand RNA-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 109 IRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
             SG  H P FT  V ++GI F       KK+A+ NAA
Sbjct: 131 TSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAA 168

Length = 183

>gnl|CDD|234517 TIGR04238, seadorna_dsRNA, seadornavirus double-stranded RNA-binding protein

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 28/105 (26%), Positives = 38/105 (36%), Gaps = 11/105 (10%)

Query: 3   KNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
              LQELA +    LP Y    +EGPDHAP F   +  N    E     S+ +QAE  AA
Sbjct: 3   VGMLQELAVKRGLELPVYEKVGKEGPDHAPTFTIKLTAND--IEVIEAASSKKQAEKLAA 60

Query: 62  EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQY 106
                 +   G        +L+     K++       V       
Sbjct: 61  ATIYEDMKENG--------LLEVHDTRKSVSIMSILLVSKFFANA 97

This protein family occurs in the seadornavirus virus group, with an N-terminal domain for binding double-stranded RNA, is designated VP12 in Banna virus, VP8 in Kadipiro virus, and VP11 in Liao ning virus. Length = 201

>gnl|CDD|234517 TIGR04238, seadorna_dsRNA, seadornavirus double-stranded RNA-binding protein

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 89  KNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
             +LQE+A + G  LP Y  + + G  H P FT  +    I      A +KKQAEK AA 
Sbjct: 3   VGMLQELAVKRGLELPVYEKVGKEGPDHAPTFTIKLTANDIEVIE-AASSKKQAEKLAAA 61

Query: 148 AAWTSLKQ--LAKETASSSSEPETNDELEQITIARALLN 184
             +  +K+  L +   +  S    +  L     A AL+N
Sbjct: 62  TIYEDMKENGLLEVHDTRKSVSIMSILLVSKFFANALIN 100

This protein family occurs in the seadornavirus virus group, with an N-terminal domain for binding double-stranded RNA, is designated VP12 in Banna virus, VP8 in Kadipiro virus, and VP11 in Liao ning virus. Length = 201

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 46/244 (18%), Positives = 64/244 (26%), Gaps = 26/244 (10%)

Query: 200  PIPFARKFPVQNTRPTSPQPPLATTSKILPLFCPKTASRHRPASSGANEKPAQPQPYGSE 259
             +P     P    RP  P       +   P        R     + A+   ++     S 
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE----SL 2798

Query: 260  GRVVRPQKFPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSAPPHPP---PSALPPQ 316
                 P   PAA  AP   +    +    + PP + + T     APP PP   P +LP  
Sbjct: 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT-----APPPPPGPPPPSLPLG 2853

Query: 317  MMRAPAVRIAPSVTVRQAVPVYAAPPVHRDDSLTVRKEDPPTTPAPAQKVDSWTVFPPAI 376
               AP   +      R      AAP       L        T              PP  
Sbjct: 2854 GSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFA---------LPPDQ 2904

Query: 377  LKDLPTVTAAAIQKEDTPTVTPAIQKQDCLTVASPVVQKENPPIVVASAVQKGYPPNSTA 436
             +  P   A        P   P            P   +  PP+   +       P+   
Sbjct: 2905 PERPPQPQAPP-----PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAV 2959

Query: 437  PSPQ 440
            P P 
Sbjct: 2960 PQPW 2963

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 31/120 (25%), Positives = 38/120 (31%), Gaps = 7/120 (5%)

Query: 268 FPAAGAAPYVPIRQYRTSCRGIAPPVTVRTTVPCFSAPPHPPPSALPPQMMRAPAVRIAP 327
           F  A AA      + +T  R  A         P   A   P P+A P     APA   A 
Sbjct: 364 FKPAAAAEAAAPAEKKTPARPEAAAPAA---APVAQAAAAPAPAAAPAAAASAPAAPPAA 420

Query: 328 SVTVRQAVPVYAAPPVHRDDSLTVRKEDPPTTPAPAQKVDSWTVFPPAILKDLPTVTAAA 387
           +     A P  AAP      +       P      A      TV  P  +   P V +AA
Sbjct: 421 APPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAA----PETVAIPVRVAPEPAVASAA 476

Length = 618

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	470
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.93
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.59
smart00358	67	DSRM Double-stranded RNA binding motif.	99.56
smart00358	67	DSRM Double-stranded RNA binding motif.	99.55
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.55
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.55
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.54
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.53
PHA03103	183	double-strand RNA-binding protein; Provisional	99.52
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.51
PHA03103	183	double-strand RNA-binding protein; Provisional	99.48
PRK12371	235	ribonuclease III; Reviewed	99.46
PRK12371	235	ribonuclease III; Reviewed	99.44
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.39
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.36
PRK14718	467	ribonuclease III; Provisional	99.35
PRK14718	467	ribonuclease III; Provisional	99.34
PRK12372	413	ribonuclease III; Reviewed	99.31
PRK00102	229	rnc ribonuclease III; Reviewed	99.29
PRK12372	413	ribonuclease III; Reviewed	99.29
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.24
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	99.24
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.24
PRK00102	229	rnc ribonuclease III; Reviewed	99.22
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.18
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.17
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.17
KOG4334	650	consensus Uncharacterized conserved protein, conta	98.76
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.18
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	98.08
KOG1817	533	consensus Ribonuclease [RNA processing and modific	97.95
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	97.79
KOG4334	650	consensus Uncharacterized conserved protein, conta	97.35
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	96.95
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	96.66
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	96.65
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	96.3
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	94.65
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	93.74
PF14954	252	LIX1: Limb expression 1	91.98
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	86.26
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	85.96
PF14954	252	LIX1: Limb expression 1	82.68

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.93  E-value=6.7e-25  Score=221.07  Aligned_cols=152  Identities=28%  Similarity=0.301  Sum_probs=130.7

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCCcc---
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPSL---   77 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~sL---   77 (470)
                      ..|.|||||.+++. .|.|++. ++||.|++.|+++|.|+... .. |.|+|||.|||.||..+|..|....+....   
T Consensus        40 ~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~~~-a~-GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~  116 (339)
T KOG3732|consen   40 PISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGEIT-AT-GEGKSKKLAKHRAAEALLKELKKLPPLANVRKD  116 (339)
T ss_pred             hHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEeeeE-Ee-cCCCchhHHHHHHHHHHHHHHhcCCCccccccC
Confidence            57999999999986 4899998 79999999999999998554 34 599999999999999999999986542210   


Q ss_pred             ----c--c-c----------ccccCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHH
Q 012154           78 ----A--A-R----------ILDETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKK  139 (470)
Q Consensus        78 ----s--s-~----------i~D~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKK  139 (470)
                          +  . .          ..+...|++++||||||+++|.+|.|+++ +.|.+|.++|+++|.+.+..- .|.|.|||
T Consensus       117 ~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~~-~GkG~sKK  195 (339)
T KOG3732|consen  117 SLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFTE-EGKGPSKK  195 (339)
T ss_pred             cccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecceee-ecCCchHH
Confidence                0  0 0          01246799999999999999999999999 889999999999999999985 48999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 012154          140 QAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus       140 eAKQ~AAk~ALe~Lk~~~  157 (470)
                      .||++||.+||+.|+...
T Consensus       196 iAKRnAAeamLe~l~~~~  213 (339)
T KOG3732|consen  196 IAKRNAAEAMLESLGFVK  213 (339)
T ss_pred             HHHHHHHHHHHHHhccCC
Confidence            999999999999998554

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.59  E-value=6.8e-15  Score=112.43  Aligned_cols=67  Identities=42%  Similarity=0.550  Sum_probs=62.5

Q ss_pred             chhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154           87 VYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL  153 (470)
Q Consensus        87 NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L  153 (470)
                      |||+.|+||||++++..|.|++. ..|++|.+.|+|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            78999999999999999999996 78999999999999999988888999999999999999999865

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.56  E-value=1.5e-14  Score=110.93  Aligned_cols=65  Identities=48%  Similarity=0.648  Sum_probs=60.5

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHh
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL   68 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L   68 (470)
                      ||+.|+||||++++ .|.|++. ..|++|.+.|+|+|.++|..++. |.|.|||+||+.||+.||..|
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L   66 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGE-GEGSSKKEAKQRAAEAALRSL   66 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEE-eccCCHHHHHHHHHHHHHHhc
Confidence            68999999999999 7999988 58999999999999999988887 489999999999999999987

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.55  E-value=1.9e-14  Score=110.39  Aligned_cols=65  Identities=40%  Similarity=0.503  Sum_probs=61.0

Q ss_pred             hhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154           88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL  153 (470)
Q Consensus        88 pKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L  153 (470)
                      ||+.|+||||++++ .|.|++. ..|++|.+.|+|+|.|+|+.++.|.|.|||+||++||+.||..|
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   66 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL   66 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence            58899999999999 7999988 57999999999999999998888999999999999999999887

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.55  E-value=1.3e-14  Score=136.93  Aligned_cols=72  Identities=25%  Similarity=0.295  Sum_probs=66.8

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      ...|||+.||||||+++..+ .|.++ +.|++|.+.|+++|.|+|..++.|.|+|||+|||+||+.||+.|...
T Consensus       106 k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~  178 (183)
T PHA02701        106 KTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN  178 (183)
T ss_pred             CCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence            45799999999999999988 89887 67999999999999999999999999999999999999999998543

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.55  E-value=2.4e-14  Score=109.38  Aligned_cols=67  Identities=45%  Similarity=0.610  Sum_probs=61.2

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHh
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL   68 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L   68 (470)
                      .||+.|+||||++++..|.|++. ..|++|.+.|+|.|.++|..++. |.|.|||+||+.||+.||..|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGE-GEGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEE-eecCCHHHHHHHHHHHHHHhC
Confidence            37999999999998888999996 78999999999999999977777 499999999999999999875

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.54  E-value=2.7e-14  Score=110.32  Aligned_cols=66  Identities=30%  Similarity=0.370  Sum_probs=59.0

Q ss_pred             hhhHHHHHHHHhCCCCCeEEeeccCCCCC-CeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154           88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHL-PVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL  153 (470)
Q Consensus        88 pKS~LQE~cQK~~l~lP~Ye~vesGP~H~-p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L  153 (470)
                      ||+.|+|||+++++.++.|.+...|++|. +.|.|+|.|+|..++.|.|+|||+||+.||+.||..|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence            68999999999999988776665555544 8999999999999999999999999999999999987

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.53  E-value=1.7e-14  Score=136.26  Aligned_cols=68  Identities=24%  Similarity=0.341  Sum_probs=63.1

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      .||+.||||||+++..+ .|.+. +.|++|.+.|+++|+|+|..++.| .|+|||+|||+||+.||..|..
T Consensus       109 DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA02701        109 NPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATA-SGCSKKLARHAACADALTILIN  177 (183)
T ss_pred             CccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHHHh
Confidence            38999999999999887 89887 779999999999999999999985 9999999999999999999865

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.52  E-value=4.5e-14  Score=133.55  Aligned_cols=71  Identities=27%  Similarity=0.308  Sum_probs=64.2

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ...|||+.||||||+++... .|.+.+.|++|.+.|+++|.|+|..++.|.|+|||+|||+||+.||..|..
T Consensus       107 K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA03103        107 KDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN  177 (183)
T ss_pred             ccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence            35699999999999999885 455458899999999999999999999999999999999999999999854

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.51  E-value=4.4e-14  Score=109.12  Aligned_cols=66  Identities=36%  Similarity=0.532  Sum_probs=57.9

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCC-CcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHh
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHA-PRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL   68 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~-prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L   68 (470)
                      ||+.|+|||++.++.++.|.....|++|. +.|.|+|+|+|..++. |.|.|||+||+.||+.||+.|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGE-GEGSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeE-eccCCHHHHHHHHHHHHHHhC
Confidence            79999999999998766555656666665 8999999999999987 499999999999999999987

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.48  E-value=9.2e-14  Score=131.48  Aligned_cols=67  Identities=27%  Similarity=0.400  Sum_probs=60.3

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      ||+.||||||+++... .|.+...|++|.+.|+++|+|+|..+++| .|+|||+|||+||+.||..|..
T Consensus       111 pKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA03103        111 PCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPA-IGSTKKEAKNNAAKLAMDKILN  177 (183)
T ss_pred             hhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence            7899999999998774 45444889999999999999999999985 9999999999999999999864

>PRK12371 ribonuclease III; Reviewed

Probab=99.46  E-value=1.7e-13  Score=133.40  Aligned_cols=71  Identities=32%  Similarity=0.244  Sum_probs=67.0

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ..|||+.||||||+.+...|.|+++ ++|++|.+.|+|+|.++|..++.|.|+|||+||++||+.||+.|+.
T Consensus       160 ~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~  231 (235)
T PRK12371        160 RRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV  231 (235)
T ss_pred             cCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence            4599999999999999999999988 7899999999999999999999999999999999999999998865

>PRK12371 ribonuclease III; Reviewed

Probab=99.44  E-value=2.4e-13  Score=132.38  Aligned_cols=68  Identities=37%  Similarity=0.410  Sum_probs=63.9

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      ||+.||||||++++..|.|++. +.||+|.+.|+|+|.++|..+++| .|+|||+||++||+.||+.|..
T Consensus       163 ~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g-~G~sKK~Ae~~AA~~al~~~~~  231 (235)
T PRK12371        163 AKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETG-EGRSKRAAEQVAAEKMLEREGV  231 (235)
T ss_pred             HHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHhhh
Confidence            8999999999998888999988 789999999999999999999885 9999999999999999999864

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.39  E-value=1e-12  Score=128.50  Aligned_cols=72  Identities=32%  Similarity=0.331  Sum_probs=68.2

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      ..|||++||||||+.+..+|.|.++ .+|++|++.|++.|.++|..++.|.|+|||+|||.||+.||..|...
T Consensus       160 ~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~  232 (235)
T COG0571         160 FKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK  232 (235)
T ss_pred             ccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence            4799999999999999999999998 67999999999999999999999999999999999999999998654

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.36  E-value=1.6e-12  Score=127.15  Aligned_cols=69  Identities=35%  Similarity=0.498  Sum_probs=65.3

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      ||+.||||||++++.+|.|.++ ++|++|++.|++.|.++|..++.| .|+|||+|||.||+.||..|...
T Consensus       163 ~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G-~G~skk~AEq~AA~~al~~l~~~  232 (235)
T COG0571         163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTG-KGRSKKEAEQAAAEQALKKLGVK  232 (235)
T ss_pred             hhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEe-cccCHHHHHHHHHHHHHHHhccc
Confidence            7999999999999999999998 779999999999999999999885 99999999999999999998764

>PRK14718 ribonuclease III; Provisional

Probab=99.35  E-value=2.1e-12  Score=135.78  Aligned_cols=70  Identities=26%  Similarity=0.287  Sum_probs=65.5

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEE-eeecccCCHHHHHHHHHHHHHHHHH
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIA-FTGEPAKNKKQAEKNAAMAAWTSLK  154 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~-f~~G~GkSKKeAKQ~AAk~ALe~Lk  154 (470)
                      ..|||+.||||||++++.+|.|.++ ++|++|.+.|++.|.|+|.. ++.|.|.|||+|||+||+.||+.|+
T Consensus       150 ~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~  221 (467)
T PRK14718        150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVT  221 (467)
T ss_pred             ccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            4699999999999999999999998 78999999999999999964 4789999999999999999999996

>PRK14718 ribonuclease III; Provisional

Probab=99.34  E-value=2e-12  Score=135.92  Aligned_cols=71  Identities=30%  Similarity=0.368  Sum_probs=64.6

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEE-ecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIF-ESPHYCSTLRQAEHSAAEVALSSLSHRGP   73 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~-gsGG~GsSKKeAEq~AAk~AL~~L~~~~p   73 (470)
                      ||+.||||||++++.+|+|.++ ++|++|++.|++.|+|+|..+ +. |.|.|||+|||.||+.||+.|....+
T Consensus       153 yKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~-G~G~SKKeAEQ~AAk~AL~kL~~~~~  225 (467)
T PRK14718        153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVS-GSGASRRAAEQAAAKKALDEVTAVAP  225 (467)
T ss_pred             HHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEE-EEcCCHHHHHHHHHHHHHHHhcccch
Confidence            8999999999999999999998 789999999999999999654 66 59999999999999999999986543

>PRK12372 ribonuclease III; Reviewed

Probab=99.31  E-value=5.8e-12  Score=131.40  Aligned_cols=71  Identities=25%  Similarity=0.275  Sum_probs=65.6

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEE-eeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIA-FTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~-f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ..|||+.||||||++++..|.|.++ +.|++|.+.|+|.|.|+|.. ++.|.|.|||+|||+||+.||+.|..
T Consensus       150 ~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~  222 (413)
T PRK12372        150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMA  222 (413)
T ss_pred             cCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence            4699999999999999999999998 78999999999999999854 56799999999999999999999973

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.29  E-value=1e-11  Score=118.06  Aligned_cols=72  Identities=36%  Similarity=0.454  Sum_probs=67.3

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ...|||+.|+||||++++..|.|.++ .+|+.|.+.|+|+|.++|..++.|.|.|||+||++||+.||+.|+.
T Consensus       156 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~  228 (229)
T PRK00102        156 LVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE  228 (229)
T ss_pred             ccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence            45699999999999999999999987 6799999999999999999999999999999999999999999864

>PRK12372 ribonuclease III; Reviewed

Probab=99.29  E-value=6e-12  Score=131.25  Aligned_cols=71  Identities=30%  Similarity=0.341  Sum_probs=64.6

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEE-EecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEI-FESPHYCSTLRQAEHSAAEVALSSLSHRGP   73 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~-~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p   73 (470)
                      ||+.||||||++++.+|+|++. +.|++|++.|+++|+|+|.. ++. |.|.|||+|||+||+.||+.|....+
T Consensus       153 ~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~-G~G~SKKeAEQ~AAr~AL~kL~~~~~  225 (413)
T PRK12372        153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVS-GSGASRRAAEQAAAKKALDEVMAAAP  225 (413)
T ss_pred             HHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEE-EEeCCHHHHHHHHHHHHHHHHhcccc
Confidence            8999999999999999999988 88999999999999999854 456 58999999999999999999996544

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.24  E-value=2e-11  Score=101.31  Aligned_cols=68  Identities=29%  Similarity=0.416  Sum_probs=60.5

Q ss_pred             chhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEee---------e-cccCCHHHHHHHHHHHHHHHHH
Q 012154           87 VYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFT---------G-EPAKNKKQAEKNAAMAAWTSLK  154 (470)
Q Consensus        87 NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~---------~-G~GkSKKeAKQ~AAk~ALe~Lk  154 (470)
                      ++++.|+|+|++++|+.|.|++. +.||+|...|++.|.|.+..+.         . -...+||+||..||+.+|..|+
T Consensus         2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg   80 (80)
T PF14709_consen    2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG   80 (80)
T ss_pred             CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence            67999999999999999999998 7899999999999999987762         2 2456899999999999999874

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=99.24  E-value=6.8e-11  Score=126.77  Aligned_cols=154  Identities=29%  Similarity=0.347  Sum_probs=117.2

Q ss_pred             CceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCC-----------ccccc-----
Q 012154           18 PSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSP-----------SLAAR-----   80 (470)
Q Consensus        18 PeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~-----------sLss~-----   80 (470)
                      +.|... +.||.|.+.|.+.|.|+|..+    .   ||.|+..||+.+++.+.+.....           .+.+.     
T Consensus        10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~----~---~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (542)
T KOG2777|consen   10 LQYNLVSQTGPVHAPLFPFSVEVNGQEF----P---KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF   82 (542)
T ss_pred             cccccccccCCCCCCcccceEEeccccc----c---cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence            678877 889999999999999999754    2   99999999999999987653311           11110     


Q ss_pred             --ccccCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           81 --ILDETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        81 --i~D~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                        ...+..|+++.|+|+++     -+.|++. +.|+.|.+.|.|.|.|+|..|.+| |.|||+||++||+.||..|....
T Consensus        83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~  156 (542)
T KOG2777|consen   83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID  156 (542)
T ss_pred             HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence              12357899999999999     4678887 889999999999999999999877 99999999999999999998877


Q ss_pred             cccCCC--CCCCCCchhHHHHHHHHHHhh
Q 012154          158 KETASS--SSEPETNDELEQITIARALLN  184 (470)
Q Consensus       158 ~e~~s~--~~~~e~~de~E~~~iar~L~~  184 (470)
                      ......  ..--++.....+.+-...|..
T Consensus       157 ~~~~~~~~~~~~e~~~~~~~~Ia~lv~~k  185 (542)
T KOG2777|consen  157 ENPERPSEALTLENPSTLGDEIAELVLEK  185 (542)
T ss_pred             CCcccccccccccCCChHHHHHHHHHHHH
Confidence            654332  122334444444333333443

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.24  E-value=2.6e-11  Score=114.20  Aligned_cols=70  Identities=43%  Similarity=0.515  Sum_probs=65.4

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL  153 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L  153 (470)
                      ...|||+.|+||||++++..|.|++. ..|++|.+.|.|.|.++|..++.|.|.|||+||++||+.||+.|
T Consensus       150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence            45799999999999999999999998 67999999999999999999999999999999999999999864

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.22  E-value=2.9e-11  Score=114.95  Aligned_cols=68  Identities=38%  Similarity=0.574  Sum_probs=63.5

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      ||+.|+||||++++..|.|++. .+|+.|.+.|+|+|.++|..+++| .|.|||+||++||+.||+.|..
T Consensus       160 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~skk~Ae~~AA~~Al~~l~~  228 (229)
T PRK00102        160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEG-TGSSKKEAEQAAAKQALKKLKE  228 (229)
T ss_pred             HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhh
Confidence            7999999999999988999987 679999999999999999999885 9999999999999999999864

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.18  E-value=4.6e-11  Score=99.16  Aligned_cols=68  Identities=32%  Similarity=0.440  Sum_probs=59.5

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEe---------cccccCCccHHHHHHHHHHHHHhh
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFE---------SPHYCSTLRQAEHSAAEVALSSLS   69 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~g---------sGG~GsSKKeAEq~AAk~AL~~L~   69 (470)
                      .++.|+|+|+|++|..|+|++. +.||+|.+.|++.|.|+|..+.         .+--..+||+|+..||+.+|..|+
T Consensus         3 a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg   80 (80)
T PF14709_consen    3 AVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG   80 (80)
T ss_pred             HHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence            5789999999999999999997 7899999999999999987762         112357899999999999999874

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.17  E-value=6.5e-11  Score=111.56  Aligned_cols=66  Identities=42%  Similarity=0.606  Sum_probs=61.4

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHh
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL   68 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L   68 (470)
                      ||+.|+||||++++..|.|++. ..|++|.+.|.|.|.++|+.+++| .|.|||+||++||+.||+.|
T Consensus       154 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g-~g~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEG-KGKSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             hHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHhC
Confidence            7999999999998888999998 679999999999999999999885 89999999999999999875

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.17  E-value=5.5e-11  Score=121.04  Aligned_cols=105  Identities=32%  Similarity=0.323  Sum_probs=87.7

Q ss_pred             cCCccHHHHHHHHHHHHHhhccCCCCccccccc-ccC-CchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEEC
Q 012154           50 CSTLRQAEHSAAEVALSSLSHRGPSPSLAARIL-DET-GVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELA  126 (470)
Q Consensus        50 GsSKKeAEq~AAk~AL~~L~~~~pS~sLss~i~-D~~-~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~  126 (470)
                      |.+.-+|+|+||..+|..|.....+...  .+. |.. ..+++.|||||.+++..+ .|++. ++|+.|.+.|++.|.|+
T Consensus         2 g~t~~~a~~daaa~al~~l~~~~~~~~~--~~~~~~g~KS~IS~l~E~~~r~~~~v-~fevl~eeGp~H~~~fv~rvtvg   78 (339)
T KOG3732|consen    2 GKTMQQAKHDAAAKALQVLQNGLISEGV--MLNADPGAKSPISLLQEYGLRRGLTP-VYEVLREEGPPHMPNFVFRVTVG   78 (339)
T ss_pred             ccchhhhhccccccchhhccCCCcchhc--ccccCcccCChHHHHHHHHHHhCCCc-ceeeeeccCCccCCCeEEEEEEe
Confidence            6788899999999999999876543221  111 222 688999999999999875 69998 69999999999999999


Q ss_pred             CEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154          127 GIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus       127 G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      .... .|.|+|||.||++||..+|..|+.+..
T Consensus        79 ~~~a-~GeG~sKK~AKh~AA~~~L~~lk~l~~  109 (339)
T KOG3732|consen   79 EITA-TGEGKSKKLAKHRAAEALLKELKKLPP  109 (339)
T ss_pred             eeEE-ecCCCchhHHHHHHHHHHHHHHhcCCC
Confidence            7764 589999999999999999999998864

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=98.76  E-value=3.3e-08  Score=105.00  Aligned_cols=148  Identities=22%  Similarity=0.153  Sum_probs=101.2

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCC-CCc----
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGP-SPS----   76 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p-S~s----   76 (470)
                      ..-.|+||+|+....+|.|++.+.- ...-.|.+.|.+|+..||+| .|.|||.|+..||+.+|..|.-.-. +.+    
T Consensus       377 ~vCiLhEy~q~~lk~~pvyef~e~~-n~stpysa~v~~d~~~yGsG-~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d  454 (650)
T KOG4334|consen  377 KVCILHEYAQQCLKSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSG-VGASKKTAKLVAARDTLEILIPDLRVSEDNVCD  454 (650)
T ss_pred             eeehHHHHHHHHhhhcceeehhhcc-CCCCcccccccccccccccc-cccchHHHHHHHHHHHHHHhcchhhhccccccc
Confidence            3457999999999899999887322 24678999999999999995 9999999999999999999864211 000    


Q ss_pred             ------------cc--c--cccc----------cCCchhhHHHHHHHHh-CCCCC--eEEeeccCCCCCCeEEEEEEECC
Q 012154           77 ------------LA--A--RILD----------ETGVYKNLLQEIAQRV-GAPLP--QYTTIRSGLGHLPVFTGIVELAG  127 (470)
Q Consensus        77 ------------Ls--s--~i~D----------~~~NpKS~LQE~cQK~-~l~lP--~Ye~vesGP~H~p~Ft~tV~I~G  127 (470)
                                  +.  .  +|.|          ....+-+.|.++.+++ ||.--  .++++..|. ....|++.|  +.
T Consensus       455 ~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~n-qkse~im~~--Gk  531 (650)
T KOG4334|consen  455 GKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGN-QKSEVIMIL--GK  531 (650)
T ss_pred             ccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCC-ccceeEeee--cc
Confidence                        00  0  1111          1235667777777766 34211  222223332 233565554  44


Q ss_pred             EEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154          128 IAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus       128 ~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      +. ..|++++|++++|.|.++.|+.|.-
T Consensus       532 ht-~~~~cknkr~gkQlASQ~ilq~lHP  558 (650)
T KOG4334|consen  532 HT-EEAECKNKRQGKQLASQRILQKLHP  558 (650)
T ss_pred             ce-eeeeeechhHHHHHHHHHHHHHhCH
Confidence            44 4689999999999999999998753

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.18  E-value=5.4e-06  Score=87.59  Aligned_cols=72  Identities=26%  Similarity=0.258  Sum_probs=65.2

Q ss_pred             cCCchhhHHHHHHHHhCCC------CCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           84 ETGVYKNLLQEIAQRVGAP------LPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~------lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ...++|+.||.+|......      +|.|.+. ..|+.+++.|.+.|.++|+.+++|.|+|.|+|+..||+.||+.++.
T Consensus       425 ~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~  503 (533)
T KOG1817|consen  425 DWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKM  503 (533)
T ss_pred             hccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHh
Confidence            3568999999999888654      7888887 7899999999999999999999999999999999999999999875

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=98.08  E-value=3.8e-06  Score=94.83  Aligned_cols=158  Identities=22%  Similarity=0.220  Sum_probs=124.1

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCC--------
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGP--------   73 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p--------   73 (470)
                      -|+.|..||.|+... |.|++..+|++...+|.|.|.+.+..+..-|...+||+|+.+||+...++|...+.        
T Consensus         3 ~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~   81 (1282)
T KOG0921|consen    3 VKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT   81 (1282)
T ss_pred             HHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence            378999999999876 99999988999999999999999988754456778999999999999999975432        


Q ss_pred             --CCc-------------------------------cc-------------------------------cccc-------
Q 012154           74 --SPS-------------------------------LA-------------------------------ARIL-------   82 (470)
Q Consensus        74 --S~s-------------------------------Ls-------------------------------s~i~-------   82 (470)
                        +.+                               +.                               +...       
T Consensus        82 ~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~ih  161 (1282)
T KOG0921|consen   82 LTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEIH  161 (1282)
T ss_pred             cccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCcccc
Confidence              000                               00                               0000       


Q ss_pred             --ccCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEEC-----CEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           83 --DETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELA-----GIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        83 --D~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~-----G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                        +...|.|..|+++-|++.... .|+.+..|++|.+.|+.+..+-     -.....+.|++||.|+...|...+..|-+
T Consensus       162 g~wt~eN~K~~ln~~~q~~~~~~-~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm~h  240 (1282)
T KOG0921|consen  162 GNWTMENAKKALNEYLQKMRIQD-NYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQLFH  240 (1282)
T ss_pred             CCCCcchhHHHHhHHHhhhhhcc-ccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHHHH
Confidence              124588999999999999844 6888888999999999886653     22344578999999999999999998888


Q ss_pred             hhcccC
Q 012154          156 LAKETA  161 (470)
Q Consensus       156 ~~~e~~  161 (470)
                      +.....
T Consensus       241 l~~~~~  246 (1282)
T KOG0921|consen  241 LNVMES  246 (1282)
T ss_pred             Hhhhhh
Confidence            776443

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=97.95  E-value=2.2e-05  Score=83.08  Aligned_cols=69  Identities=29%  Similarity=0.458  Sum_probs=61.9

Q ss_pred             cHHHHHHHHHHcCC------CCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            2 YKNQLQELAQRSCF------NLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         2 yKS~LQElcQK~g~------~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      +|+.||.+|....-      .+|.|.+. ..||.+++.|++.|+++|+.+++| .|++-|+|+-.||+.||+.+...
T Consensus       429 pkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~-~G~nik~Ae~rAA~~ALe~~~~d  504 (533)
T KOG1817|consen  429 PKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATG-VGSNIKQAEMRAAMQALENLKMD  504 (533)
T ss_pred             cHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeec-cCchHhHHHHHHHHHHHHHHHhh
Confidence            68999999988643      46888888 789999999999999999999995 99999999999999999999863

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=97.79  E-value=6.3e-05  Score=81.68  Aligned_cols=64  Identities=31%  Similarity=0.427  Sum_probs=56.6

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG   72 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~   72 (470)
                      +.+.|+||++     -+.|++. ..|+.|.+.|.+.|.|||..|.. | |+|||+|++.||..||+.|....
T Consensus        92 pv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~-~-~~sKk~ak~~aa~~al~~l~~~~  156 (542)
T KOG2777|consen   92 PVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEG-G-GRSKKEAKQEAAMAALQVLFKID  156 (542)
T ss_pred             chHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccC-C-CcchHHHHHHHHHHHHHHHHhcc
Confidence            4578999998     3688888 88999999999999999999864 5 99999999999999999998653

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=97.35  E-value=0.00018  Score=77.29  Aligned_cols=73  Identities=19%  Similarity=0.121  Sum_probs=61.3

Q ss_pred             chhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhccc
Q 012154           87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKET  160 (470)
Q Consensus        87 NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~e~  160 (470)
                      ..+=.|+||+|+....+|.|++.+.- ...-.|...|.+++..||.|.|.|||.||..||+.+|+.|--.....
T Consensus       376 s~vCiLhEy~q~~lk~~pvyef~e~~-n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~  448 (650)
T KOG4334|consen  376 SKVCILHEYAQQCLKSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVS  448 (650)
T ss_pred             eeeehHHHHHHHHhhhcceeehhhcc-CCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhhhc
Confidence            34568999999999999999987432 23457999999999999999999999999999999999996554433

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=96.95  E-value=0.0021  Score=65.90  Aligned_cols=73  Identities=22%  Similarity=0.193  Sum_probs=65.7

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccC-CCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSG-LGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esG-P~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ..++...|-++|+++++.-|+|.+. ++| ....+.|.+.+.-+.+.+|.|.|.|-|.|++.||..||..|-...
T Consensus       231 l~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~t  305 (333)
T KOG3769|consen  231 LQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHT  305 (333)
T ss_pred             ccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCC
Confidence            4589999999999999999999998 555 467789999999999999999999999999999999999987655

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=96.66  E-value=0.0017  Score=66.44  Aligned_cols=69  Identities=20%  Similarity=0.263  Sum_probs=61.0

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeC-CCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REG-PDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeG-P~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      +..+|-++|+++|+.-|+|.+. +.| ....+.|.+.++-|.+.+|.| .|.|-|.|++.||.+||..+=..
T Consensus       234 P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG-~Gesl~~A~e~AA~dAL~k~y~~  304 (333)
T KOG3769|consen  234 PRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQG-QGESLKLAEEQAARDALIKLYDH  304 (333)
T ss_pred             hHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccC-cchHHHHHHHHHHHHHHHHHHcC
Confidence            4578999999999999999998 555 457799999999999999985 99999999999999999998654

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=96.65  E-value=0.0016  Score=72.72  Aligned_cols=130  Identities=24%  Similarity=0.205  Sum_probs=92.9

Q ss_pred             CceE------Ee-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc----------CCCC-----
Q 012154           18 PSYT------CI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR----------GPSP-----   75 (470)
Q Consensus        18 PeYe------l~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~----------~pS~-----   75 (470)
                      ..|+      +. ..||.|.++|+++|.+||..+..  .|.|||.|+-.||.+-|.....-          +.+.     
T Consensus       386 LQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~a--~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~  463 (816)
T KOG3792|consen  386 LQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAEA--EGPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPE  463 (816)
T ss_pred             ceeccccCCCceeccCCcccchhhhhhhhcCCcccc--CCcccccchHHHHHHHhhccCCCccccccccccCCCcccCCC
Confidence            3788      65 78999999999999999998863  79999999999999999887321          0000     


Q ss_pred             -------ccc--------ccc-------c-------c---cCCchhhHHHHHHHHhCCCCCeEEee-ccC-CCCCCeEEE
Q 012154           76 -------SLA--------ARI-------L-------D---ETGVYKNLLQEIAQRVGAPLPQYTTI-RSG-LGHLPVFTG  121 (470)
Q Consensus        76 -------sLs--------s~i-------~-------D---~~~NpKS~LQE~cQK~~l~lP~Ye~v-esG-P~H~p~Ft~  121 (470)
                             +..        +.+       .       .   ...+....|+|-   +..  -.|++. +.| -.|+++|..
T Consensus       464 ~~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek---~rg--~k~El~set~~gs~~~R~v~  538 (816)
T KOG3792|consen  464 PKGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK---RRG--DKYELPSETGTGSHDKRFVK  538 (816)
T ss_pred             CCCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh---ccc--cceecccccCCCCCCceeee
Confidence                   000        000       0       0   122444444444   222  268876 555 789999999


Q ss_pred             EEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154          122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus       122 tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      .|++.|+.+ .|.+.++|-|+..|+..|++.+..
T Consensus       539 gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt~~  571 (816)
T KOG3792|consen  539 GVMRVGILA-KGLLLNGDRAVELALLCAEKPTSG  571 (816)
T ss_pred             eeeeeehhh-ccccccchHHHHHHHHhccCcccc
Confidence            999999997 489999999999998888765533

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=96.30  E-value=0.014  Score=49.43  Aligned_cols=66  Identities=24%  Similarity=0.328  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHhCC-----CCCeEEeeccCCCCCCeEEEEEEECCE----EeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           89 KNLLQEIAQRVGA-----PLPQYTTIRSGLGHLPVFTGIVELAGI----AFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        89 KS~LQE~cQK~~l-----~lP~Ye~vesGP~H~p~Ft~tV~I~G~----~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      ++.|+.||++..-     ..|.|++...+.    .|.|+|.+-..    .+.+....||+.||+.||-.|...|..++.
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~   76 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGE   76 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            5789999988642     357888774432    89999988532    244447789999999999999999988875

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=94.65  E-value=0.049  Score=62.96  Aligned_cols=71  Identities=25%  Similarity=0.230  Sum_probs=62.5

Q ss_pred             chhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeee-cccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           87 VYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTG-EPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        87 NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~-G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      |-|..|..||.++++. |.|++..+|......|.|.|.+.+..+.. |...+||.|+++||+.-.+.|....+
T Consensus         2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk   73 (1282)
T KOG0921|consen    2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGK   73 (1282)
T ss_pred             cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhcc
Confidence            5689999999999998 89999988888888999999999988653 56678999999999999999977654

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=93.74  E-value=0.12  Score=43.83  Aligned_cols=66  Identities=20%  Similarity=0.100  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHcCC-----CCCceEEeeeCCCCCCcEEEEEEECC----EEEecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154            3 KNQLQELAQRSCF-----NLPSYTCIREGPDHAPRFKATVNFNG----EIFESPHYCSTLRQAEHSAAEVALSSLSHRGP   73 (470)
Q Consensus         3 KS~LQElcQK~g~-----~lPeYel~eeGP~H~prFtv~V~VnG----e~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p   73 (470)
                      .+.|+.||++..-     ..|.|.+...+.    .|.|+|.+-.    ..+ .|..-.|||.||+.||-.|...|-+.|.
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i-~g~~~~sk~~AK~sAAf~Ac~~L~~~g~   76 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSI-EGPPMRSKKLAKRSAAFEACKKLHEAGE   76 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--E-EEE--SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeE-EccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            5789999998532     248888885442    8999999842    112 2235789999999999999999987654

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>PF14954 LIX1: Limb expression 1

Probab=91.98  E-value=0.38  Score=47.87  Aligned_cols=68  Identities=26%  Similarity=0.220  Sum_probs=48.2

Q ss_pred             cCCchhhHHHHHHHHh---CCCCCeEEee--ccCCCCCCeEEEEEEECCEE-eee-cccCCHHHHHHHHHHHHHH
Q 012154           84 ETGVYKNLLQEIAQRV---GAPLPQYTTI--RSGLGHLPVFTGIVELAGIA-FTG-EPAKNKKQAEKNAAMAAWT  151 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~---~l~lP~Ye~v--esGP~H~p~Ft~tV~I~G~~-f~~-G~GkSKKeAKQ~AAk~ALe  151 (470)
                      ...|-+..||||=|..   +..++.=.++  ++.|...+-|.|-|++-|-. ||. -.+.||.+|++.||+.||.
T Consensus        19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALm   93 (252)
T PF14954_consen   19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALM   93 (252)
T ss_pred             ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHH
Confidence            4568899999987654   2232211111  45566678899999997654 443 4789999999999999985

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=86.26  E-value=0.25  Score=53.24  Aligned_cols=67  Identities=24%  Similarity=0.297  Sum_probs=58.8

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .|..|.+||-+.+..-|.|++...   .+..|...++++|..|.++-+..++|.|+|.||..+|......
T Consensus       377 ~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~  443 (477)
T KOG2334|consen  377 PKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLW  443 (477)
T ss_pred             HHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcc
Confidence            588999999999988899999843   4789999999999999887677899999999999999987654

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=85.96  E-value=0.41  Score=51.63  Aligned_cols=71  Identities=24%  Similarity=0.298  Sum_probs=60.0

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeec-ccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGE-PAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G-~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      ...+|..|.+||.+.+..-|.|++++.   -+..|...+.++|+.|..+ +-.+||.|+|.||..+|........
T Consensus       374 ~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~e~  445 (477)
T KOG2334|consen  374 WDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLWEA  445 (477)
T ss_pred             CCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcchh
Confidence            357899999999999999999999853   3568999999999998776 5579999999999999887755543

>PF14954 LIX1: Limb expression 1

Probab=82.68  E-value=2.5  Score=42.31  Aligned_cols=71  Identities=30%  Similarity=0.388  Sum_probs=46.9

Q ss_pred             HHHHHHHHH---cCCCCCceEEe--eeCCCCCCcEEEEEEECCEE-EecccccCCccHHHHHHHHHHHHH-hhccCCC
Q 012154            4 NQLQELAQR---SCFNLPSYTCI--REGPDHAPRFKATVNFNGEI-FESPHYCSTLRQAEHSAAEVALSS-LSHRGPS   74 (470)
Q Consensus         4 S~LQElcQK---~g~~lPeYel~--eeGP~H~prFtv~V~VnGe~-~gsGG~GsSKKeAEq~AAk~AL~~-L~~~~pS   74 (470)
                      ..||||=|.   +|..++.=.+.  +..|...+.|.|=|++-|-. ||.--.+.||-+|++.||+.||-. +-++.|+
T Consensus        25 ~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSvfNEhPs  102 (252)
T PF14954_consen   25 EALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSVFNEHPS  102 (252)
T ss_pred             HHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHHHhcCCc
Confidence            468887654   33333322222  45566788999999996644 443235889999999999999866 3344443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	470
2l2n_A	103	Backbone 1h, 13c, And 15n Chemical Shift Assignment		8e-06
3adg_A	73	Structure Of Arabidopsis Hyl1 And Its Molecular Imp		8e-06
2l2m_A	77	Solution Structure Of The Second Dsrbd Of Hyl1 Leng		3e-04

>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For The First Dsrbd Of Protein Hyl1 Length = 103

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           ++K++LQE AQ+     P Y  ++EGP H   F++TV  +G  + S       + AE SA
Sbjct: 18  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77
Query: 61  AEVALSSLSHRGPSPSLAARILDETG 86
           AEVAL  L+         ++ + ETG
Sbjct: 78  AEVALRELAKSSELSQCVSQPVHETG 103

>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 73

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
          ++K++LQE AQ+     P Y  ++EGP H   F++TV  +G  + S       + AE SA
Sbjct: 4  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63
Query: 61 AEVALSSLS 69
          AEVAL  L+
Sbjct: 64 AEVALRELA 72

>pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1 Length = 77

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 82  LDETGVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTG 132
           + ETG+ KNLLQE AQ++   +P Y   +   LG +  FT  VE+ GI +TG
Sbjct: 3   MHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTG 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	470
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	2e-42
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	3e-15
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	2e-08
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	9e-31
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	7e-19
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	8e-28
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	4e-18
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	2e-27
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	1e-19
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	2e-17
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	8e-13
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	7e-17
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	1e-08
1x49_A	97	Interferon-induced, double-stranded RNA- activated	2e-15
1x49_A	97	Interferon-induced, double-stranded RNA- activated	6e-12
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	2e-14
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	8e-12
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	3e-14
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	3e-10
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	5e-14
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	1e-10
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	1e-13
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	3e-10
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	1e-13
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	2e-12
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	4e-13
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	6e-12
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	1e-12
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	2e-11
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	2e-12
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	1e-11
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	5e-12
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	1e-10
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	7e-12
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	1e-08
2dix_A	84	Interferon-inducible double stranded RNA- dependen	7e-12
2dix_A	84	Interferon-inducible double stranded RNA- dependen	1e-11
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	1e-11
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	3e-10
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	3e-11
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	9e-09
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	3e-11
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	8e-11
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	8e-11
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	8e-10
2l33_A	91	Interleukin enhancer-binding factor 3; structural	2e-10
2l33_A	91	Interleukin enhancer-binding factor 3; structural	3e-09
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	2e-10
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	1e-09
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	1e-09
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	8e-09
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	1e-09
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	1e-08
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	1e-09
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	9e-07
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	3e-09
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	4e-09
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	1e-08
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	2e-07
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	8e-07
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	2e-06
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	3e-05
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	6e-05
2qvw_A	756	GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral	4e-05
2qvw_A	756	GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral	5e-05
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	2e-04
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	2e-04
1x48_A	88	Interferon-induced, double-stranded RNA- activated	3e-04
1uil_A	113	Double-stranded RNA-binding motif; structural geno	7e-04

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score =  147 bits (372), Expect = 2e-42
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 10/168 (5%)

Query: 2   YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
           +  +L    Q+    L        GP H  RF   V  +G  F      S  ++A+++AA
Sbjct: 15  FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS-KKEAKNAAA 73

Query: 62  EVALSSLSHRGPSPSLAARILDETG------VYKNLLQEIAQRVGAPLPQYTTIRSGLGH 115
           ++A+  L+    + S        +        Y  L+  IAQ+    +  Y    SG+  
Sbjct: 74  KLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVN-YEQCASGVHG 132

Query: 116 LPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASS 163
              F    ++    ++      K++A++ AA  A+  +    +ET S 
Sbjct: 133 PEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILS--EETGSG 178

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 72.6 bits (178), Expect = 3e-15
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 2/113 (1%)

Query: 72  GPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFT 131
           G    +A  +    G +   L    Q+ G  L       SG  H   FT  V + G  F 
Sbjct: 1   GSHMEMAGDL--SAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFP 58

Query: 132 GEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIARALLN 184
               ++KK+A+  AA  A   L +  K  +        + E   +     L+N
Sbjct: 59  EGEGRSKKEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLIN 111

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
            Y   +  +AQ+    +  Y     G      F        + + S    ST ++A+  A
Sbjct: 105 NYIGLINRIAQKKRLTVN-YEQCASGVHGPEGFHYKCKMGQKEY-SIGTGSTKQEAKQLA 162

Query: 61  AEVALSSLSHRGPSPS 76
           A++A   +     + S
Sbjct: 163 AKLAYLQI-LSEETGS 177

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score =  113 bits (285), Expect = 9e-31
 Identities = 30/86 (34%), Positives = 46/86 (53%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           ++K++LQE AQ+     P Y  ++EGP H   F++TV  +G  + S       + AE SA
Sbjct: 18  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77

Query: 61  AEVALSSLSHRGPSPSLAARILDETG 86
           AEVAL  L+         ++ + ETG
Sbjct: 78  AEVALRELAKSSELSQCVSQPVHETG 103

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 80.6 bits (199), Expect = 7e-19
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 78  AARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAF-TGEPAK 136
            +  +    V+K+ LQE AQ+   P P Y  ++ G  H  +F   V L G+ + +     
Sbjct: 9   VSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFF 68

Query: 137 NKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDE 172
           N+K AE++AA  A   L++LAK +  S    +   E
Sbjct: 69  NRKAAEQSAAEVA---LRELAKSSELSQCVSQPVHE 101

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score =  104 bits (262), Expect = 8e-28
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
          ++K++LQE AQ+     P Y  ++EGP H   F++TV  +G  + S       + AE SA
Sbjct: 4  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63

Query: 61 AEVALSSLS 69
          AEVAL  L+
Sbjct: 64 AEVALRELA 72

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 77.7 bits (192), Expect = 4e-18
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAF-TGEPAKNKKQAEKNAA 146
           +K+ LQE AQ+   P P Y  ++ G  H  +F   V L G+ + +     N+K AE++AA
Sbjct: 5   FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 64

Query: 147 MAAWTSLKQ 155
             A   L +
Sbjct: 65  EVALRELAK 73

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score =  103 bits (259), Expect = 2e-27
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 84  ETGVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAE 142
             G+ KNLLQE AQ++   +P Y   +   LG +  FT  VE+ GI +TG   + KK AE
Sbjct: 2   SHGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAE 61

Query: 143 KNAAMAAWTSLKQ 155
            +A   A  +++ 
Sbjct: 62  ISAGRTALLAIQS 74

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 81.9 bits (203), Expect = 1e-19
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 1  MYKNQLQELAQRSCFNLPSYTCIR-EGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHS 59
          + KN LQE AQ+  + +P Y C + E      +F  TV   G  + +     T + AE S
Sbjct: 5  LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKY-TGAATRTKKDAEIS 63

Query: 60 AAEVALSSL 68
          A   AL ++
Sbjct: 64 AGRTALLAI 72

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
             K  L E  +R     P Y  ++   D    F + V    + ++S  +  + + AE +A
Sbjct: 27  TPKMCLLEWCRREKLPQPVYETVQRTIDR--MFCSVVTVAEQKYQSTLWDKSKKLAEQTA 84

Query: 61  AEVALSSLSHRGPSPSLAARILDETG-VYKNLLQEIAQRVGAPLP 104
           A V L S            R+ +E+  + K   +   Q  G P  
Sbjct: 85  AIVCLRSQGLPEG------RLGEESPSLNKRKREAPDQDPGGPRS 123

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 64.2 bits (156), Expect = 8e-13
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAF-TGEPAKNKKQAEKNAA 146
            K  L E  +R   P P Y T++       +F  +V +A   + +    K+KK AE+ AA
Sbjct: 28  PKMCLLEWCRREKLPQPVYETVQRT--IDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAA 85

Query: 147 MAAWTSLKQLAKETASSSS 165
           +    S           S 
Sbjct: 86  IVCLRSQGLPEGRLGEESP 104

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 78.6 bits (193), Expect = 7e-17
 Identities = 31/211 (14%), Positives = 51/211 (24%), Gaps = 33/211 (15%)

Query: 2   YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
               L E  QR     P Y          P F A+V  +G  +      S+ + A++ AA
Sbjct: 24  EVCILHEYMQRVLKVRPVYNFFECENPSEP-FGASVTIDGVTY-GSGTASSKKLAKNKAA 81

Query: 62  EVALSSLSHRGPSPSLAARILDETGV------------------------YKNLLQEIAQ 97
              L  L       +   +  D   +                           +L E  +
Sbjct: 82  RATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLK 141

Query: 98  RVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA 157
           R               G       ++        G   KNK+  ++ A+      L    
Sbjct: 142 RNHGMGDTSIKFEVVPGKNQKSEYVMACGKHTVRGW-CKNKRVGKQLASQKILQLLHPHV 200

Query: 158 K------ETASSSSEPETNDELEQITIARAL 182
           K            S      E    ++    
Sbjct: 201 KNWGSLLRMYGRESSKMVKQETSDKSVIELQ 231

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 73  PSPSLAARILDETGV-YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFT 131
            +P+    +++  G     +L E  QRV    P Y            F   V + G+ + 
Sbjct: 8   DAPTKKEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECE-NPSEPFGASVTIDGVTYG 66

Query: 132 GEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDE 172
              A +KK A+  AA A    L+ L  +    +SE +  D 
Sbjct: 67  SGTASSKKLAKNKAARAT---LEILIPDFVKQTSEEKPKDS 104

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 2/98 (2%)

Query: 72  GPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFT 131
           G S S      D  G Y + L +  Q  G  +       SG  H   FT  V +    F 
Sbjct: 1   GSSGSSGMA-SDTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFP 59

Query: 132 GEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPET 169
               ++K++A   AA  A   L     +    +S P +
Sbjct: 60  EAKGRSKQEARNAAAKLAVDILDN-ENKVDCHTSGPSS 96

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 60.9 bits (148), Expect = 6e-12
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
          Y ++L +  Q       +Y  +   GP H  RF   V  + + F      S  ++A ++A
Sbjct: 16 YMDKLNKYRQMHG-VAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSK-QEARNAA 73

Query: 61 AEVALSSLSHRGPSPS 76
          A++A+  L +      
Sbjct: 74 AKLAVDILDNENKVDC 89

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 71.0 bits (175), Expect = 2e-14
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
           YK +LQEI Q+     P+Y  I   G  H   F    ++      GE  K+KK+AE+ AA
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE-GKSKKEAEQRAA 210

Query: 147 MAAWTSLKQ 155
                 L++
Sbjct: 211 EELIKLLEE 219

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 63.7 bits (156), Expect = 8e-12
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 2   YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           YK  LQE+ Q+     P Y  I   GP H  +F                  + ++AE  A
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLG--EGKSKKEAEQRA 209

Query: 61  AEVALSSL 68
           AE  +  L
Sbjct: 210 AEELIKLL 217

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 72  GPSPSLAARILDETGV-YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIA 129
           G S S       ++       LQE+  + G  LP+YT    SG  H   FT    +    
Sbjct: 1   GSSGSSGPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI 60

Query: 130 FTGEPAKNKKQAEKNAAMAAWTSLKQLA 157
             G    +KK A++NAA      +   +
Sbjct: 61  EIGS-GTSKKLAKRNAAAKMLLRVSGPS 87

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
              LQEL  +  + LP YT  +E GP H   F  T      I       ++ + A+ +A
Sbjct: 18 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNA 75

Query: 61 AEVALSSLSHR 71
          A   L  +S  
Sbjct: 76 AAKMLLRVSGP 86

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 66.6 bits (163), Expect = 5e-14
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
               LQE+  + G  LP+YT    SG  H   FT    +      G    +KK A++NAA
Sbjct: 17  EVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS-GTSKKLAKRNAA 75

Query: 147 MAAWTSLKQL 156
                 +  +
Sbjct: 76  AKMLLRVHTV 85

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
              LQEL  +  + LP YT  +E GP H   F  T      I       ++ + A+ +A
Sbjct: 17 EVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG--SGTSKKLAKRNA 74

Query: 61 AEVALSSL 68
          A   L  +
Sbjct: 75 AAKMLLRV 82

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 64.9 bits (159), Expect = 1e-13
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 89  KNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
              LQE+A + G  LP+YT    SG  H   FT    +     TG    +K+ A++ AA 
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGS-GTSKQVAKRVAAE 61

Query: 148 AAWTSLK 154
              T  K
Sbjct: 62  KLLTKFK 68

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 3  KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
             LQELA +  + LP YT     GP H   F  T      +       ++ + A+  AA
Sbjct: 3  VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSG--TSKQVAKRVAA 60

Query: 62 EVALSSL 68
          E  L+  
Sbjct: 61 EKLLTKF 67

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAG-IAFTGEPAKNKKQAEKNAA 146
           +K  LQE+    G   P Y    +G  H   FT +V +      +G   ++KK+AE+ AA
Sbjct: 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGV-GRSKKEAEQKAA 222

Query: 147 MAAWTSLKQLAKETASSSS 165
            AAW +L+ L       +S
Sbjct: 223 AAAWKALEVLDNAMPGKTS 241

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 2   YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
           +K  LQEL        PSY     GPDH   F A V      +       + ++AE  AA
Sbjct: 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEY-GSGVGRSKKEAEQKAA 222

Query: 62  EVALSSLSHRGPSPS 76
             A  +L     +  
Sbjct: 223 AAAWKALEVLDNAMP 237

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 63.9 bits (156), Expect = 4e-13
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
             + L +I Q      P Y  +   G+     F   V++     TG    NKK A+KNAA
Sbjct: 8   PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGT-GPNKKIAKKNAA 66

Query: 147 MAAWTSLKQLAKETASSSSEPE 168
            A    L QL  + ++S  +  
Sbjct: 67  EAM---LLQLGYKASTSLQDSG 85

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
            ++L ++ Q      P Y  + E G      F   V    E+          + A+ +A
Sbjct: 8  PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATG--TGPNKKIAKKNA 65

Query: 61 AEVALSSLSHRGPSPS 76
          AE  L  L ++  +  
Sbjct: 66 AEAMLLQLGYKASTSL 81

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAG-IAFTGEPAKNKKQAEKNA 145
           YK  LQEI Q      PQY T+   G  HL  F   + L G        A +KK+A++ A
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI-AGSKKEAQQMA 237

Query: 146 AMAAWTSLKQL 156
           A  A   L  L
Sbjct: 238 AKIALEKLGAL 248

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 2   YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           YK +LQE+ Q      P Y  +R  GPDH  +F+  +  +G+   +     + ++A+  A
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 237

Query: 61  AEVALSSLS 69
           A++AL  L 
Sbjct: 238 AKIALEKLG 246

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAF-TGEPAKNKKQAEKNA 145
           YK  LQEI Q      P+Y  +         +F   V + G    TG+  + KK+AEK A
Sbjct: 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGK-GRTKKEAEKEA 239

Query: 146 AMAAWTSLKQ 155
           A  A+  L +
Sbjct: 240 ARIAYEKLLK 249

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 2   YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           YK  LQE+ Q      P Y  +R    D    F   V  NG+   +     T ++AE  A
Sbjct: 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTI-ATGKGRTKKEAEKEA 239

Query: 61  AEVALSSLSH 70
           A +A   L  
Sbjct: 240 ARIAYEKLLK 249

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
             +LLQE   R+G   P Y  +   G  H P FT  V +   + TG+   +KK A+  AA
Sbjct: 16  PISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ-GPSKKAAKHKAA 73

Query: 147 MAAWTSLK 154
             A   LK
Sbjct: 74  EVALKHLK 81

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 2  YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
            + LQE   R     P Y  +  EG  H P F   V              + + A+H A
Sbjct: 16 PISLLQEYGTRI-GKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTG--QGPSKKAAKHKA 72

Query: 61 AEVALSSLSHRG-PSPSL 77
          AEVAL  L       P+L
Sbjct: 73 AEVALKHLKGGSMLEPAL 90

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 60.6 bits (147), Expect = 7e-12
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
              +L E  QRV    P Y            F   V + G+ +    A +KK A+  AA 
Sbjct: 18  EVCILHEYMQRVLKVRPVYNFFECE-NPSEPFGASVTIDGVTYGSGTASSKKLAKNKAAR 76

Query: 148 AAWTSLKQLAKETASSSSEPETND 171
           A    L+ L  +    +SE   + 
Sbjct: 77  AT---LEILIPDFVKQTSESGPSS 97

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
              L E  QR     P Y    E  + +  F A+V  +G  +      S+ + A++ AA
Sbjct: 18 EVCILHEYMQRVLKVRPVYNFF-ECENPSEPFGASVTIDGVTY-GSGTASSKKLAKNKAA 75

Query: 62 EVALSSL 68
             L  L
Sbjct: 76 RATLEIL 82

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 60.0 bits (146), Expect = 7e-12
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 3  KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
             L E   ++  N+P Y C   +   H P F   V             ++ + A+H AA
Sbjct: 11 IQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGDITCTG--EGTSKKLAKHRAA 67

Query: 62 EVALSSLSHRGPSPS 76
          E A++ L      PS
Sbjct: 68 EAAINILKANASGPS 82

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 89  KNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
             +L E   +    +P Y         H+P FT  V +  I  TGE   +KK A+  AA 
Sbjct: 11  IQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAE 68

Query: 148 AAWTSLKQLAKETASSSS 165
           AA   +  L    +  SS
Sbjct: 69  AA---INILKANASGPSS 83

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
             + + EI  +       +  +R  G  H+  F     +  I   GE    KK ++K AA
Sbjct: 9   PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEGE-GNGKKVSKKRAA 66

Query: 147 MAAWTSLKQL 156
                 L++L
Sbjct: 67  EKMLVELQKL 76

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
            +Q+ E+  +       +  +RE GP H   F         + E     +  + ++  A
Sbjct: 9  PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEG--EGNGKKVSKKRA 65

Query: 61 AEVALSSLSH 70
          AE  L  L  
Sbjct: 66 AEKMLVELQK 75

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 59.6 bits (144), Expect = 3e-11
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 51  STLRQAEHSAAEVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTI- 109
           S+     HS+  V   S            RI       KN +  + +        Y    
Sbjct: 3   SSHHHHHHSSGLVPRGSHMSDPKKKMCKERIPQ----PKNTVAMLNEL--RHGLIYKLES 56

Query: 110 RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEP 167
           ++G  H P+FT  VE+ G  + G+  ++KK A   AA  A  S  Q       S  +P
Sbjct: 57  QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAATALRSFIQFKDGAVLSPLKP 113

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 52.2 bits (125), Expect = 9e-09
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           KN +  L +    +   Y    + GP HAP F  +V  +G+ +       + + A   A
Sbjct: 36 PKNTVAMLNELR--HGLIYKLESQTGPVHAPLFTISVEVDGQKYLG--QGRSKKVARIEA 91

Query: 61 AEVALSSL 68
          A  AL S 
Sbjct: 92 AATALRSF 99

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGE-PAKNKKQAEKNAA 146
            KN L     +     P Y     G  +   F   V + G  + G   + NKK A+ N  
Sbjct: 8   IKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSN-- 64

Query: 147 MAAWTSLKQLAKETASSSSE 166
            AA   +  L +     S E
Sbjct: 65  -AARDFVNYLVRINEVKSEE 83

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 57.9 bits (140), Expect = 8e-11
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
           KN L     +     P+Y     G  +  +F   V   G  +      +  + A+ +AA
Sbjct: 8  IKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 62 EVALSSLSHRG 72
             ++ L    
Sbjct: 67 RDFVNYLVRIN 77

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 57.4 bits (139), Expect = 8e-11
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 2  YKNQLQELA-----QRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYC---ST 52
           K+QLQ+       +    ++P Y  ++  GP HA  +   V F GE       C    +
Sbjct: 3  PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERI----GCGKGPS 58

Query: 53 LRQAEHSAAEVALSSLS 69
          ++QAE  AA  AL   +
Sbjct: 59 IQQAEMGAAMDALEKYN 75

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 88  YKNLLQEIA-----QRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAF-TGEPAKNKKQ 140
            K+ LQ+       +     +P Y T+   G  H   +T  V   G     G+   + +Q
Sbjct: 3   PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQ 61

Query: 141 AEKNAAMAAWTSLKQLAKE 159
           AE  AAM A          
Sbjct: 62  AEMGAAMDALEKYNFPQMH 80

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
           KN + EL ++       Y  I E G  H  RF   V  +G+ F+     S  + A+  A
Sbjct: 16 GKNPVMELNEK--RRGLKYELISETGGSHDKRFVMEVEVDGQKFQG--AGSNKKVAKAYA 71

Query: 61 AEVALSSLSHRGPSPSLAAR 80
          A  AL  L    P    A +
Sbjct: 72 ALAALEKLFPDTPLALDANK 91

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 72  GPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAF 130
           G      + +L + G  KN + E+ ++      +Y  I  +G  H   F   VE+ G  F
Sbjct: 2   GHHHHHHSHMLTKHG--KNPVMELNEK--RRGLKYELISETGGSHDKRFVMEVEVDGQKF 57

Query: 131 TGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPE 168
            G    NKK A+  AA+AA   L++L  +T  +    +
Sbjct: 58  QGA-GSNKKVAKAYAALAA---LEKLFPDTPLALDANK 91

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 72  GPSPSLAARILDETGV-YKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIA 129
           G S S   +ILD   +   N L  + Q    P  QY  +  SG  H PVFT  V++ G  
Sbjct: 1   GSSGSSGRKILDSKAIDLMNALMRLNQI--RPGLQYKLLSQSGPVHAPVFTMSVDVDGTT 58

Query: 130 FTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPE 168
           +      +KK A+ + A+     L+ +   T   +    
Sbjct: 59  YEAS-GPSKKTAKLHVAVKV---LQAMGYPTGFDADISG 93

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
            N L  L Q        Y  + + GP HAP F  +V+ +G  +E+     + + A+   
Sbjct: 18 LMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEA--SGPSKKTAKLHV 73

Query: 61 AEVALSSL 68
          A   L ++
Sbjct: 74 AVKVLQAM 81

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
             +L E  +        Y  I E G  H  RF   V  +G+ F+     S  + A+  A
Sbjct: 9  PVMELNEKRRG-----LKYELISETGGSHDKRFVMEVEVDGQKFQG--AGSNKKVAKAYA 61

Query: 61 AEVALSSLSHRGP 73
          A  AL  L    P
Sbjct: 62 ALAALEKLFPDTP 74

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 51.1 bits (123), Expect = 8e-09
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
               L E  + +     +Y  I  +G  H   F   VE+ G  F G    NKK A+  AA
Sbjct: 9   PVMELNEKRRGL-----KYELISETGGSHDKRFVMEVEVDGQKFQGA-GSNKKVAKAYAA 62

Query: 147 MAAWTSLKQLA 157
           +AA   L    
Sbjct: 63  LAALEKLFPDT 73

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 89  KNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
           KN L ++ +    P  QY  + ++G  H P+F   VE+ G  F G     KK+A+ +AA 
Sbjct: 7   KNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGS-GPTKKKAKLHAAE 63

Query: 148 AAWTSLKQL 156
            A  S  Q 
Sbjct: 64  KALRSFVQF 72

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 3  KNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
          KN L +L +        Y  + + GP HAP F  +V  NG++FE      T ++A+  AA
Sbjct: 7  KNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEG--SGPTKKKAKLHAA 62

Query: 62 EVALSSL 68
          E AL S 
Sbjct: 63 EKALRSF 69

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAF-TGEPAKNKKQAEKNAA 146
            KN L E+ Q        +      L  +P F   V++  I     E   + ++AE  AA
Sbjct: 256 AKNELAELLQINKLGHKLHYRK---LTEMPPFRVEVKIGDILLDEAE-GNSIREAEHRAA 311

Query: 147 MAAWTSLKQLAK 158
           M    + + L K
Sbjct: 312 MKVLENDELLRK 323

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 12/71 (16%)

Query: 2   YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYC----STLRQAE 57
            KN+L EL Q +      +          P F+  V     +           +++R+AE
Sbjct: 256 AKNELAELLQINKLGHKLHY---RKLTEMPPFRVEVKIGDIL-----LDEAEGNSIREAE 307

Query: 58  HSAAEVALSSL 68
           H AA   L + 
Sbjct: 308 HRAAMKVLEND 318

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
              +L E+   +     +Y  +  SG  H   F   V + G  F G   +NKK A+  AA
Sbjct: 6   PVMILNELRPGL-----KYDFLSESGESHAKSFVMSVVVDGQFFEGS-GRNKKLAKARAA 59

Query: 147 MAAWTSLKQL 156
            +A  ++  L
Sbjct: 60  QSALATVFNL 69

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
              L EL          Y  + E G  HA  F  +V  +G+ FE        + A+  A
Sbjct: 6  PVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFFEG--SGRNKKLAKARA 58

Query: 61 AEVALSSL 68
          A+ AL+++
Sbjct: 59 AQSALATV 66

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHS 59
           + ++ ++EL +      P           +  + + TV   G+         + R A+ +
Sbjct: 198 VPRSPVRELLEM----EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGV-GRSYRIAKSA 252

Query: 60  AAEVALSSL 68
           AA  AL SL
Sbjct: 253 AARRALRSL 261

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAG-IAFTGEPAKNKKQAEKNA 145
            ++ ++E+ +      P+      +   +       VE+ G   F G   ++ + A+  A
Sbjct: 199 PRSPVRELLEM----EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGV-GRSYRIAKSAA 253

Query: 146 AMAAWTSLKQ 155
           A  A  SLK 
Sbjct: 254 ARRALRSLKA 263

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 49.2 bits (116), Expect = 8e-07
 Identities = 34/166 (20%), Positives = 52/166 (31%), Gaps = 10/166 (6%)

Query: 89  KNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
           KN L ++ +    P  QY  +  +G  H P+F   VE+ G  F G     KK+A+ +AA 
Sbjct: 7   KNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGS-GPTKKKAKLHAAE 63

Query: 148 AAWTSLKQLAKETASSSSEPETNDELEQITIARALLNYRLKEKMAMASTLDSPIPFARKF 207
            A  S  Q    + +  +   T       T  +A     L          + P      F
Sbjct: 64  KALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPP------F 117

Query: 208 PVQNTRPTSPQPPLATTSKILPLFCPKTASRHRPASSGANEKPAQP 253
            V +    S       +    P+    T                 P
Sbjct: 118 YVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSGKNP 163

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 102 PLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL 156
           P  +Y  +  SG  H   F   V + G  F G   +NKK A+  AA +A  ++  L
Sbjct: 172 PGLKYDFLSESGESHAKSFVMSVVVDGQFFEGS-GRNKKLAKARAAQSALATVFNL 226

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 15  FNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH 70
                Y  + E G  HA  F  +V  +G+ FE        + A+  AA+ AL+++ +
Sbjct: 171 RPGLKYDFLSESGESHAKSFVMSVVVDGQFFEG--SGRNKKLAKARAAQSALATVFN 225

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 43.4 bits (101), Expect = 6e-05
 Identities = 37/186 (19%), Positives = 60/186 (32%), Gaps = 15/186 (8%)

Query: 3   KNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
           KN L +L +        Y  + + GP HAP F  +V  NG++FE      T ++A+  AA
Sbjct: 7   KNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEG--SGPTKKKAKLHAA 62

Query: 62  EVALSSLSHRGPSPSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTG 121
           E AL S      +      +     V  +   + A         + T         V + 
Sbjct: 63  EKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSN 122

Query: 122 IVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKETASSSSEPETNDELEQITIARA 181
                     G+ + +       +A     SL Q           P   + +  +   R 
Sbjct: 123 ----------GDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSGKNPVMILNELRP 172

Query: 182 LLNYRL 187
            L Y  
Sbjct: 173 GLKYDF 178

>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 18/157 (11%), Positives = 37/157 (23%), Gaps = 20/157 (12%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
                 +      A   ++ ++                ++ +         + +      
Sbjct: 449 AVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLE------RLRDIPAED 502

Query: 147 MAAWTSLKQLAKETASSSSEPETNDELEQITIARALLNYRL-----------KEKMAMAS 195
           M  W  L  +     S  S P     +  I    A   +             K + A   
Sbjct: 503 MLDWYRL-GIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPGFYVEQQTDKNESACPP 561

Query: 196 TLDSPIPFARK-FPVQNTRPTSPQPPLATTSKILPLF 231
           T+     + R           +  P     SK+L L+
Sbjct: 562 TIPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALY 598

>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 4/66 (6%), Positives = 12/66 (18%), Gaps = 5/66 (7%)

Query: 2   YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
              +  +           +  + +   +       +   +    E          AE   
Sbjct: 449 AVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLER----LRDIPAEDML 504

Query: 61  AEVALS 66
               L 
Sbjct: 505 DWYRLG 510

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Length = 94

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 2/71 (2%)

Query: 89  KNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGE-PAKNKKQAEKNAAM 147
           K  L  +          Y T++      P       +      G    +N K A   AA 
Sbjct: 9   KRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAE 67

Query: 148 AAWTSLKQLAK 158
            A    K L  
Sbjct: 68  NALRDKKMLDF 78

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B Length = 117

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 2/72 (2%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGE-PAKNKKQAEKNAA 146
            K  L  +          Y T++      P       +      G    +N K A   AA
Sbjct: 10  AKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 68

Query: 147 MAAWTSLKQLAK 158
             A    K L  
Sbjct: 69  ENALRDKKMLDF 80

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 88

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 83  DETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAE 142
             +  Y  L+   AQ+    +  Y            F    ++    +       K++A+
Sbjct: 3   SGSSGYIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAK 61

Query: 143 KNAAMAAWTSLKQLAKETASSSS 165
           + AA  A+  L +   +TA +S 
Sbjct: 62  QLAAKEAYQKLLKSPPKTAGTSG 84

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A Length = 113

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFT-----GIVELAGIAFTGEPAKNKKQAE 142
            K  L +  Q+      +Y   + G  H   F       I +L    F  E   NKK A 
Sbjct: 28  AKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAA 86

Query: 143 KNAAMAAWTSLKQL 156
           ++ A++    L  L
Sbjct: 87  QSCALSLVRQLYHL 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	470
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.98
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.96
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.94
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.79
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.77
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.77
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.76
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.76
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.75
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.75
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.73
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.72
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.72
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.72
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.71
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.71
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.71
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.71
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.7
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.7
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.7
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.7
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.7
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.7
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.69
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.69
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.68
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.67
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.67
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.67
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.67
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.66
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.65
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.65
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.65
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.64
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.64
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.63
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.63
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.62
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.61
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.61
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.61
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.61
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.6
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.58
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.57
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.56
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.55
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.54
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.53
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.5
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.49
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.47
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.46
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.45
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.44
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.43
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.41
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.36
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.34
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.33
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.32
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.17
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	98.91
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	98.85
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	98.58
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	98.51
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	95.1
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	90.07
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	84.74
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	83.49
2db2_A	119	KIAA0890 protein; DSRM domain, structural genomics	81.88

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.98  E-value=1.1e-32  Score=253.69  Aligned_cols=153  Identities=21%  Similarity=0.273  Sum_probs=133.4

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCCc---
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSPS---   76 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~s---   76 (470)
                      .||+.||||||++++. |.|+++ +.||+|++.|+++|+|+|..++.| .|+|||+|||+||+.||+.|.......+   
T Consensus        14 n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~~   91 (179)
T 1qu6_A           14 FFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEG-EGRSKKEAKNAAAKLAVEILNKEKKAVSPLL   91 (179)
T ss_dssp             SHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEE-ECCSSHHHHHHHHHHHHHHHHSCCSCCSCSS
T ss_pred             CHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEec-CCCCHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence            4899999999999987 899987 789999999999999999888774 9999999999999999999987543211   


Q ss_pred             --ccccc-cccCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154           77 --LAARI-LDETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL  153 (470)
Q Consensus        77 --Lss~i-~D~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L  153 (470)
                        +.... .....||++.||||||++++.+ .|++.++|++|.+.|+|+|.|+|+.|+.|.|.|||+||++||+.||..|
T Consensus        92 ~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L  170 (179)
T 1qu6_A           92 LTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI  170 (179)
T ss_dssp             CCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHH
Confidence              00111 1145799999999999999987 8998889999999999999999999888999999999999999999999


Q ss_pred             Hhh
Q 012154          154 KQL  156 (470)
Q Consensus       154 k~~  156 (470)
                      ...
T Consensus       171 ~~~  173 (179)
T 1qu6_A          171 LSE  173 (179)
T ss_dssp             HHC
T ss_pred             hcc
Confidence            654

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.96  E-value=4.6e-29  Score=239.36  Aligned_cols=148  Identities=20%  Similarity=0.130  Sum_probs=120.2

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCCC-cc-
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPSP-SL-   77 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS~-sL-   77 (470)
                      .||+.||||||++++.+|.|+++ ++||+  +.|+++|+|+|..|+.| .|+|||+|||+||+.||..|....+.. +. 
T Consensus        23 d~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~   99 (232)
T 2yt4_A           23 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPDFVKQTSEE   99 (232)
T ss_dssp             CHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHSTTTTTC----
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeec-CCCCHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence            48999999999999999999997 78987  99999999999999885 999999999999999999997643210 00 


Q ss_pred             --------c---------ccc-----cccCCchhhHHHHHHHHhCCCCCeEE--ee-ccCCCCCCeEEEEEEECCEEeee
Q 012154           78 --------A---------ARI-----LDETGVYKNLLQEIAQRVGAPLPQYT--TI-RSGLGHLPVFTGIVELAGIAFTG  132 (470)
Q Consensus        78 --------s---------s~i-----~D~~~NpKS~LQE~cQK~~l~lP~Ye--~v-esGP~H~p~Ft~tV~I~G~~f~~  132 (470)
                              .         ..+     .....|||+.||| ||++++.+|.|+  ++ ++|++|.+.|+|+|.  +. ++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~~-~~~  175 (232)
T 2yt4_A          100 KPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--KH-TVR  175 (232)
T ss_dssp             ----CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--TE-EEE
T ss_pred             ccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--EE-EEE
Confidence                    0         000     0134699999999 999999999999  55 789999999999887  54 456


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHh
Q 012154          133 EPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus       133 G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      |.|.|||+|||.||+.||..|..
T Consensus       176 G~G~sKK~Aeq~AA~~aL~~L~~  198 (232)
T 2yt4_A          176 GWCKNKRVGKQLASQKILQLLHP  198 (232)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHST
T ss_pred             EEeCCHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999964

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.94  E-value=8.6e-26  Score=216.83  Aligned_cols=146  Identities=31%  Similarity=0.351  Sum_probs=121.7

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCC------
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGP------   73 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p------   73 (470)
                      .||+.|++|++.  +.+|.|+++ ++||+|++.|+++|+|+|..+ . |.|+|||+|||+||+.||+.|.....      
T Consensus         5 ~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~   80 (236)
T 2l3j_A            5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-E-GSGPTKKKAKLHAAEKALRSFVQFPNASEAHL   80 (236)
T ss_dssp             CTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-E-EEESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred             CCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-E-EecCChHHHHHHHHHHHHHHHHhccccccchh
Confidence            489999999987  357999997 789999999999999999986 5 59999999999999999999875310      


Q ss_pred             ------C-----Cc--------cc---c-------------------------cc---------------------cccC
Q 012154           74 ------S-----PS--------LA---A-------------------------RI---------------------LDET   85 (470)
Q Consensus        74 ------S-----~s--------Ls---s-------------------------~i---------------------~D~~   85 (470)
                            .     .+        +.   .                         .+                     .+..
T Consensus        81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~  160 (236)
T 2l3j_A           81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSG  160 (236)
T ss_dssp             SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSS
T ss_pred             hhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCC
Confidence                  0     00        00   0                         00                     0023


Q ss_pred             CchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154           86 GVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        86 ~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      .|||++||||     +..|.|+++ ++|++|.+.|+|+|.|+|+.+ .|.|+|||+|||+||+.||..|...
T Consensus       161 ~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~  226 (236)
T 2l3j_A          161 KNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL  226 (236)
T ss_dssp             CCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence            6999999999     567999987 789999999999999999987 7899999999999999999999653

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.79  E-value=2e-19  Score=142.12  Aligned_cols=67  Identities=31%  Similarity=0.406  Sum_probs=63.7

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhh
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLS   69 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~   69 (470)
                      |||+.||||||++++.+|.|++. ++||+|++.|+++|+|+|. ++.| .|+|||+||++||+.||..|.
T Consensus         1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G-~G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETG-SGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999987 7899999999999999998 8874 999999999999999999986

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.77  E-value=1.1e-18  Score=139.52  Aligned_cols=70  Identities=36%  Similarity=0.549  Sum_probs=66.4

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHH
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNAAMAAWTSLK  154 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~G-kSKKeAKQ~AAk~ALe~Lk  154 (470)
                      ..|||+.||||||++++.+|.|+++.+|++|.+.|+|.|.|+|..++.|.| +|||+|||+||+.||..|.
T Consensus         2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence            369999999999999999999999866999999999999999999999999 9999999999999999885

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.77  E-value=1.4e-18  Score=138.95  Aligned_cols=68  Identities=40%  Similarity=0.576  Sum_probs=64.1

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEeccccc-CCccHHHHHHHHHHHHHhh
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYC-STLRQAEHSAAEVALSSLS   69 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~G-sSKKeAEq~AAk~AL~~L~   69 (470)
                      .||+.||||||++++.+|.|++..+||+|++.|+++|+|+|..++.| .| +|||+||++||+.||..|.
T Consensus         4 d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             SHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEee-eccCCHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999669999999999999999999885 89 9999999999999999885

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.76  E-value=1.1e-18  Score=140.72  Aligned_cols=71  Identities=38%  Similarity=0.586  Sum_probs=67.1

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ..|||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||..|..
T Consensus         3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence            3699999999999999999999997 7899999999999999999999999999999999999999999863

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.76  E-value=1.5e-18  Score=140.01  Aligned_cols=69  Identities=32%  Similarity=0.463  Sum_probs=64.8

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      +||+.||||||++++.+|.|+++ ++||+|++.|+++|+|+|..++.| .|+|||+||++||+.||..|..
T Consensus         5 n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGA-ATRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             HHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECC-CBSSHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHHHhh
Confidence            38999999999999999999997 789999999999999999999885 9999999999999999999864

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.75  E-value=3.5e-18  Score=142.37  Aligned_cols=74  Identities=26%  Similarity=0.283  Sum_probs=67.7

Q ss_pred             ccCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           83 DETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        83 D~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ....|||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|..+.
T Consensus        12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~p   86 (88)
T 3adl_A           12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTVP   86 (88)
T ss_dssp             CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHccC
Confidence            345799999999999999999999997 7899999999999999998 8889999999999999999999997554

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.75  E-value=2.6e-18  Score=135.80  Aligned_cols=66  Identities=30%  Similarity=0.308  Sum_probs=63.3

Q ss_pred             hhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 012154           88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK  154 (470)
Q Consensus        88 pKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk  154 (470)
                      ||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|+
T Consensus         2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence            7999999999999999999987 7899999999999999998 8899999999999999999999985

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.73  E-value=8e-18  Score=140.36  Aligned_cols=71  Identities=27%  Similarity=0.271  Sum_probs=66.8

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ...|||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|..
T Consensus        14 ~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~   85 (89)
T 2cpn_A           14 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSG   85 (89)
T ss_dssp             CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence            35699999999999999999999997 7899999999999999998 88899999999999999999999964

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.72  E-value=1.3e-17  Score=139.05  Aligned_cols=69  Identities=26%  Similarity=0.230  Sum_probs=65.5

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK  154 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk  154 (470)
                      ..|||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|.
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~   74 (89)
T 1uhz_A            5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLG   74 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHh
Confidence            4699999999999999999999997 7899999999999999997 8889999999999999999999995

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.72  E-value=1.6e-17  Score=136.84  Aligned_cols=73  Identities=26%  Similarity=0.216  Sum_probs=66.7

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      ...|||+.||||||+++ ..|.|+++ ++|++|.+.|+|.|.|+| .++.|.|+|||+|||+||+.||..|.....
T Consensus         6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~   79 (84)
T 2dix_A            6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANAS   79 (84)
T ss_dssp             CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcccc
Confidence            34799999999999998 68999997 789999999999999999 888899999999999999999999975543

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=139.03  Aligned_cols=69  Identities=26%  Similarity=0.316  Sum_probs=63.9

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .||+.||||||++++.+|.|+++ ++||+|++.|+++|+|+|. ++.| .|+|||+||++||+.||..|...
T Consensus        16 d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~   85 (88)
T 3adl_A           16 HEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVHTV   85 (88)
T ss_dssp             CHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHHcc
Confidence            38999999999999999999997 7899999999999999998 8874 99999999999999999999754

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.71  E-value=3.7e-18  Score=137.41  Aligned_cols=70  Identities=17%  Similarity=0.231  Sum_probs=65.5

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ...|||+.||||||++++. |.|+++ ++|++|.+.|+|+|.|+| .++.|.|+|||+|||+||+.||..|+.
T Consensus         5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            3469999999999999999 999987 789999999999999999 888899999999999999999999864

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.71  E-value=1.6e-17  Score=138.59  Aligned_cols=69  Identities=28%  Similarity=0.322  Sum_probs=64.3

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .||+.||||||++++.+|.|+++ ++||+|++.|+++|+|+|. ++.| .|+|||+||++||+.||..|...
T Consensus        17 d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~   86 (89)
T 2cpn_A           17 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVSGP   86 (89)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEe-eeCCHHHHHHHHHHHHHHHHHhh
Confidence            38999999999999999999987 7899999999999999998 8875 99999999999999999999753

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.71  E-value=1.7e-17  Score=138.39  Aligned_cols=69  Identities=20%  Similarity=0.216  Sum_probs=64.0

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .||+.||||||++++.+|.|+++ ++|++|++.|+++|+|+|. ++.| .|+|||+||++||+.||..|...
T Consensus         7 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~   76 (89)
T 1uhz_A            7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATG-TGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHhcc
Confidence            48999999999999999999997 7899999999999999997 7774 99999999999999999999753

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.71  E-value=8.8e-18  Score=139.05  Aligned_cols=71  Identities=25%  Similarity=0.233  Sum_probs=65.3

Q ss_pred             CchhhHHHHHHHH-----hCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154           86 GVYKNLLQEIAQR-----VGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        86 ~NpKS~LQE~cQK-----~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      .|||+.||||||+     +++.+|.|+++ ++||+|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||..|...
T Consensus         1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~   77 (85)
T 2khx_A            1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP   77 (85)
T ss_dssp             CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred             CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence            4899999999998     46789999997 78999999999999999999999999999999999999999987544

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.70  E-value=3.5e-17  Score=139.81  Aligned_cols=75  Identities=33%  Similarity=0.501  Sum_probs=66.5

Q ss_pred             ccCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHHhhh
Q 012154           83 DETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        83 D~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~G-kSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ....|||+.||||||++++.+|.|+++.+|++|.+.|+|.|.|+|..++.|.| +|||+|||+||+.||..|....
T Consensus        14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~   89 (103)
T 2l2n_A           14 SNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS   89 (103)
T ss_dssp             -----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence            44579999999999999999999999966999999999999999999999999 9999999999999999997544

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.70  E-value=2.6e-17  Score=139.37  Aligned_cols=73  Identities=26%  Similarity=0.276  Sum_probs=67.5

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ...|||+.||||||++++. |.|+++ ++|++|.+.|+|.|.|+|+.++.|.|+|||+|||+||+.||..|....
T Consensus        12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~   85 (97)
T 1x49_A           12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNEN   85 (97)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhc
Confidence            5679999999999999997 799987 789999999999999999999999999999999999999999996443

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.70  E-value=1.1e-17  Score=138.47  Aligned_cols=70  Identities=30%  Similarity=0.376  Sum_probs=63.7

Q ss_pred             CcHHHHHHHHHH-----cCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQR-----SCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK-----~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .||+.||||||+     +++.+|.|+++ ++||+|++.|+++|+|+|..++.| .|+|||+||++||+.||..|...
T Consensus         2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G-~G~SKK~AEq~AA~~AL~~L~~~   77 (85)
T 2khx_A            2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCG-KGPSIQQAEMGAAMDALEKYNFP   77 (85)
T ss_dssp             CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCE-EESSHHHHHHHHHHHHHTTCCSS
T ss_pred             CHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhHh
Confidence            389999999998     46778999997 789999999999999999999884 99999999999999999988654

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.70  E-value=3.2e-17  Score=140.07  Aligned_cols=72  Identities=38%  Similarity=0.545  Sum_probs=65.9

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEeccccc-CCccHHHHHHHHHHHHHhhccCC
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYC-STLRQAEHSAAEVALSSLSHRGP   73 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~G-sSKKeAEq~AAk~AL~~L~~~~p   73 (470)
                      .||+.||||||++++.+|.|++..+||+|++.|+++|+|+|..++.| .| +|||+||++||+.||..|.....
T Consensus        18 d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G-~G~~SKK~Aeq~AA~~AL~~L~~~~~   90 (103)
T 2l2n_A           18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELAKSSE   90 (103)
T ss_dssp             -CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEe-ecCCCHHHHHHHHHHHHHHHHhcccc
Confidence            48999999999999999999999669999999999999999999885 89 99999999999999999986543

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.70  E-value=4.6e-17  Score=134.07  Aligned_cols=68  Identities=26%  Similarity=0.356  Sum_probs=62.6

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .||+.||||||+++ .+|.|+++ ++||+|++.|+++|+|+| .++.| .|+|||+|||+||+.||..|...
T Consensus         9 d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~   77 (84)
T 2dix_A            9 TPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTG-EGTSKKLAKHRAAEAAINILKAN   77 (84)
T ss_dssp             CHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEE-CSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEe-eeCCHHHHHHHHHHHHHHHHhcc
Confidence            48999999999998 68999997 789999999999999999 78774 99999999999999999999754

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.70  E-value=3e-17  Score=131.35  Aligned_cols=69  Identities=32%  Similarity=0.392  Sum_probs=63.6

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      ..|||+.||||||+  +..|.|+++ ++|++|++.|+|.|.|+|..+ .|.|+|||+|||+||+.||..|.++
T Consensus         3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~   72 (73)
T 2b7t_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF   72 (73)
T ss_dssp             SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhcC
Confidence            46999999999996  778999997 789999999999999999987 7999999999999999999999753

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.69  E-value=1.2e-17  Score=134.41  Aligned_cols=67  Identities=19%  Similarity=0.272  Sum_probs=62.3

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      .||+.||||||++++. |.|++. ++||+|++.|+++|+|+| .++.| .|+|||+||+.||+.||..|..
T Consensus         8 d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G-~G~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            8 SPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEG-EGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEE-CCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEE-eeCCHHHHHHHHHHHHHHHHhh
Confidence            3899999999999998 999997 789999999999999999 78874 9999999999999999999864

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.69  E-value=6.7e-17  Score=134.42  Aligned_cols=74  Identities=20%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCC-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhccc
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLP-VFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKET  160 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p-~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~e~  160 (470)
                      ..|||+.||||||++++.+ .|+ .++|++|.+ .|+|.|.|+|+.++.|.|+|||+|||+||+.||..|.......
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~   79 (88)
T 1x48_A            5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKT   79 (88)
T ss_dssp             SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4699999999999999977 999 888999999 7999999999999999999999999999999999998765433

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.68  E-value=6.2e-17  Score=134.86  Aligned_cols=72  Identities=31%  Similarity=0.331  Sum_probs=58.5

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ...|||+.||||||+++. .|.|+++ ++|++|++.|+|.|.|+|+ ++.|.|+|||+|||+||+.||..|....
T Consensus        12 ~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~   84 (90)
T 3llh_A           12 PGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGS   84 (90)
T ss_dssp             -CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred             cCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence            457999999999999875 7999997 8899999999999999998 5779999999999999999999996554

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.67  E-value=7.4e-17  Score=134.40  Aligned_cols=68  Identities=31%  Similarity=0.347  Sum_probs=56.0

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .||+.||||||+++. .|.|++. ++||+|++.|+++|+|+|+ ++. |.|+|||+|||+||+.||..|...
T Consensus        15 d~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~-G~G~SKK~Aeq~AA~~aL~~L~~~   83 (90)
T 3llh_A           15 TPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCT-GQGPSKKAAKHKAAEVALKHLKGG   83 (90)
T ss_dssp             CHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEE-EEeCCHHHHHHHHHHHHHHHHHhc
Confidence            489999999999984 7999987 8899999999999999998 566 599999999999999999999764

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.67  E-value=7e-17  Score=137.30  Aligned_cols=72  Identities=24%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECC-EEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAG-IAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G-~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ..|||+.||||||++ +..|.|++.++|++|.+.|+|.|.|+| ..++.|.|+|||+|||+||+.||+.|....
T Consensus         5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~   77 (99)
T 1whq_A            5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN   77 (99)
T ss_dssp             CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence            359999999999999 889999997789999999999999999 688889999999999999999999997543

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.67  E-value=5.7e-17  Score=137.30  Aligned_cols=69  Identities=23%  Similarity=0.375  Sum_probs=64.1

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG   72 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~   72 (470)
                      ||+.||||||++++. |.|+++ +.||+|++.|+++|+|+|+.++.| .|+|||+|||+||+.||..|....
T Consensus        16 ~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~   85 (97)
T 1x49_A           16 YMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEA-KGRSKQEARNAAAKLAVDILDNEN   85 (97)
T ss_dssp             HHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCE-EESSHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHHhhc
Confidence            899999999999986 799987 789999999999999999988874 999999999999999999997654

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.67  E-value=8.8e-17  Score=128.60  Aligned_cols=66  Identities=35%  Similarity=0.455  Sum_probs=60.5

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      .||+.||||||+  +.+|.|++. ++||+|++.|+++|+|+|..+ . |.|+|||+||++||+.||..|..
T Consensus         5 d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~L~~   71 (73)
T 2b7t_A            5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-E-GSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-E-EEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-E-eecCCHHHHHHHHHHHHHHHHhc
Confidence            489999999996  578999997 789999999999999999887 5 59999999999999999999875

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.66  E-value=6e-17  Score=137.71  Aligned_cols=70  Identities=19%  Similarity=0.180  Sum_probs=64.4

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECC-EEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNG-EIFESPHYCSTLRQAEHSAAEVALSSLSHRG   72 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnG-e~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~   72 (470)
                      .||+.||||||++ +.+|+|++.+.|++|++.|+|+|+|+| ..++.| .|+|||+|||+||+.||..|...+
T Consensus         7 d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~   77 (99)
T 1whq_A            7 GIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMG-NSTNKKDAQSNAARDFVNYLVRIN   77 (99)
T ss_dssp             SSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEE-EESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEe-ccCCHHHHHHHHHHHHHHHHHhhC
Confidence            4899999999999 888999998889999999999999999 678874 999999999999999999998654

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.65  E-value=1.6e-16  Score=132.14  Aligned_cols=69  Identities=20%  Similarity=0.269  Sum_probs=63.6

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEeeeCCCCCC-cEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAP-RFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG   72 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~eeGP~H~p-rFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~   72 (470)
                      .||+.||||||++++.+ .|+ .++||+|++ +|+++|+|+|+.++.| .|+|||+|||+||+.||..|....
T Consensus         7 d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~   76 (88)
T 1x48_A            7 GYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAAKEAYQKLLKSP   76 (88)
T ss_dssp             CHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEE-EESSHHHHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHHHHhcC
Confidence            48999999999999876 999 888999999 7999999999999885 999999999999999999998764

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.65  E-value=5.1e-16  Score=131.57  Aligned_cols=74  Identities=24%  Similarity=0.215  Sum_probs=67.3

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhcc
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKE  159 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~e  159 (470)
                      ...|||+.||||||++++.+|.|+++ ++|++  +.|+|.|.|+|..++.|.|+|||+|||+||+.||..|.....+
T Consensus        14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~   88 (98)
T 1x47_A           14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVK   88 (98)
T ss_dssp             TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSSSC
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhhhh
Confidence            45799999999999999999999998 67887  8999999999999999999999999999999999999754433

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.65  E-value=4.4e-16  Score=131.59  Aligned_cols=69  Identities=28%  Similarity=0.342  Sum_probs=64.0

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ...|||+.||||||++  ..|.|+++ ++|++|.+.|++.|.|+|+.+ .|.|+|||+|||+||+.||..|..
T Consensus        14 ~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~   83 (97)
T 2dmy_A           14 KAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY   83 (97)
T ss_dssp             CSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence            5679999999999996  68999998 689999999999999999998 799999999999999999999953

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.64  E-value=3.5e-16  Score=135.83  Aligned_cols=72  Identities=22%  Similarity=0.220  Sum_probs=66.6

Q ss_pred             CchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           86 GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVEL-----AGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        86 ~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I-----~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      .|||+.||||||++++ .|.|++.+.||+|.+.|+|.|.|     +|..++.|.|+|||+|||+||+.||..|.....
T Consensus        26 ~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~  102 (113)
T 1uil_A           26 ENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV  102 (113)
T ss_dssp             HHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4899999999999999 99999658899999999999999     688888899999999999999999999987654

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.64  E-value=1.1e-16  Score=135.73  Aligned_cols=73  Identities=18%  Similarity=0.010  Sum_probs=66.5

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGI-AFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~-~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      ..|||+.||||||+. ...|.|+++..||+|++.|++.|.|+|. .++.|.|+|||+|||+||+.||..|.-+..
T Consensus         5 ~~D~KT~LQE~~Q~~-~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~k   78 (94)
T 1t4n_A            5 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF   78 (94)
T ss_dssp             CHHHHHHHHHHTCSS-SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence            459999999999997 4689999986699999999999999998 899999999999999999999998876654

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.63  E-value=4.3e-16  Score=135.26  Aligned_cols=69  Identities=28%  Similarity=0.354  Sum_probs=63.3

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEE-----CCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNF-----NGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG   72 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~V-----nGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~   72 (470)
                      ||+.||||||++++ +|.|++.+.||+|++.|+++|+|     +|..++.| .|+|||+|||+||+.||..|...+
T Consensus        28 ~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G-~G~SKK~AEq~AA~~AL~~L~~~~  101 (113)
T 1uil_A           28 AKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARE-HGSNKKLAAQSCALSLVRQLYHLG  101 (113)
T ss_dssp             HHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEEC-CCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEE-eeCCHHHHHHHHHHHHHHHHHhcC
Confidence            79999999999998 89999668999999999999999     68888874 999999999999999999997643

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.63  E-value=3.4e-16  Score=131.59  Aligned_cols=69  Identities=30%  Similarity=0.328  Sum_probs=63.0

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGP   73 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p   73 (470)
                      ++|+.||||||+++  .|.|+++ ++||+|++.|+++|+|+|..+ . |.|+|||+|||+||+.||..|....+
T Consensus        15 ~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~-G~G~SKK~AEq~AA~~AL~~L~~~~~   84 (91)
T 2l33_A           15 HGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-Q-GAGSNKKVAKAYAALAALEKLFPDTP   84 (91)
T ss_dssp             STTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-E-eeeCCHHHHHHHHHHHHHHHHhhcCC
Confidence            47999999999998  7899987 789999999999999999987 5 59999999999999999999986654

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.62  E-value=6.7e-16  Score=130.50  Aligned_cols=67  Identities=24%  Similarity=0.329  Sum_probs=61.5

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .||+.||||||++  .+|.|+++ ++||+|++.|+++|+|+|..+ . |.|+|||+|||+||+.||..|...
T Consensus        17 d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~aL~~L~~~   84 (97)
T 2dmy_A           17 DLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-E-ASGPSKKTAKLHVAVKVLQAMGYP   84 (97)
T ss_dssp             SCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-E-EeeCCHHHHHHHHHHHHHHHhCCC
Confidence            3899999999996  57999998 789999999999999999998 6 599999999999999999999753

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.61  E-value=2.2e-16  Score=133.86  Aligned_cols=67  Identities=18%  Similarity=0.139  Sum_probs=61.5

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCE-EEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE-IFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe-~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      ||+.||||||+++ .+|.|++..+||+|++.|+++|.|+|. .++.| .|+|||+|||+||+.||..|..
T Consensus         8 ~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G-~G~SKK~AEQ~AA~~AL~~l~~   75 (94)
T 1t4n_A            8 AKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDKKM   75 (94)
T ss_dssp             HHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEE-EESSHHHHHHHHHHHHHHCHHH
T ss_pred             chHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHHHH
Confidence            7999999999975 679999986699999999999999998 88885 9999999999999999998754

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.61  E-value=9.5e-16  Score=128.90  Aligned_cols=68  Identities=32%  Similarity=0.295  Sum_probs=63.0

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ..++|+.||||||+++  .|.|+++ ++|++|++.|+|.|.|+|..+ .|.|+|||+|||+||+.||..|..
T Consensus        13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~   81 (91)
T 2l33_A           13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFP   81 (91)
T ss_dssp             CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred             ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhh
Confidence            3589999999999988  7899997 789999999999999999987 799999999999999999999963

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.61  E-value=1.4e-15  Score=134.98  Aligned_cols=71  Identities=27%  Similarity=0.244  Sum_probs=66.0

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHHhh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~G-kSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      ...|||+.||||||++++.+|.|+++..  +|.+.|+|.|.|+|+.|+.|.| +|||+|||+||+.||..|...
T Consensus        24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~   95 (128)
T 1whn_A           24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP   95 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred             cCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence            4569999999999999999999999865  8999999999999999999999 999999999999999999643

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.61  E-value=1.1e-15  Score=129.60  Aligned_cols=68  Identities=28%  Similarity=0.299  Sum_probs=62.9

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .||+.||||||++++.+|.|+++ ++|++  +.|++.|+|+|..++.| .|+|||+|||+||+.||..|...
T Consensus        17 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~   85 (98)
T 1x47_A           17 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPD   85 (98)
T ss_dssp             CHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHhh
Confidence            38999999999999999999998 68987  99999999999999885 99999999999999999999754

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.60  E-value=5.8e-16  Score=135.97  Aligned_cols=75  Identities=17%  Similarity=0.001  Sum_probs=67.9

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhhhccc
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGI-AFTGEPAKNKKQAEKNAAMAAWTSLKQLAKET  160 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~-~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~e~  160 (470)
                      ..|||+.||||||+. ...|.|+++..||+|++.|++.|.|+|. .++.|.|.|||+|||+||+.||..|..+....
T Consensus         7 ~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~Ky~   82 (117)
T 1t4o_A            7 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYA   82 (117)
T ss_dssp             CTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred             CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999994 5789999986699999999999999999 89999999999999999999999988776643

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.58  E-value=2.6e-15  Score=133.36  Aligned_cols=68  Identities=24%  Similarity=0.250  Sum_probs=63.1

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEeccccc-CCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYC-STLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~G-sSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .||+.||||||++++.+|+|+++.+  +|++.|+++|+|+|+.|+.| .| +|||+|||+||+.||..|...
T Consensus        27 d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G-~G~~SKK~AEQ~AA~~AL~~L~~~   95 (128)
T 1whn_A           27 TPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQST-LWDKSKKLAEQTAAIVCLRSQGLP   95 (128)
T ss_dssp             CHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEES-SCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEE-eccCCHHHHHHHHHHHHHHHHhcc
Confidence            3899999999999999999999865  89999999999999999885 99 999999999999999999754

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.57  E-value=1.1e-15  Score=134.29  Aligned_cols=67  Identities=18%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCE-EEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGE-IFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe-~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      ||+.||||||+.+ .+|.|+++.+||+|++.|+++|+|+|. .++.| .|+|||+|||+||+.||..+..
T Consensus        10 ~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G-~G~SKK~AEQ~AA~~AL~~l~~   77 (117)
T 1t4o_A           10 AKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDKKM   77 (117)
T ss_dssp             HHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEE-EESSHHHHHHHHHHHHHHCHHH
T ss_pred             chHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHHHH
Confidence            8999999999954 789999986699999999999999998 88885 9999999999999999988764

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.56  E-value=3.1e-15  Score=130.63  Aligned_cols=69  Identities=28%  Similarity=0.317  Sum_probs=63.1

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      ...|||+.||||||+     |.|+++ ++|++|++.|+|+|.|+|+.+ .|.|+|||+|||+||+.||+.|.....
T Consensus        35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~  104 (114)
T 2ljh_A           35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKD  104 (114)
T ss_dssp             CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTT
T ss_pred             CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCC
Confidence            457999999999984     899997 789999999999999999999 899999999999999999999976543

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.55  E-value=1.1e-14  Score=115.67  Aligned_cols=66  Identities=29%  Similarity=0.319  Sum_probs=60.3

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      ..|+++.|||||     ..|.|+++ ++|++|.+.|+|.|.|+|+.+ .|.|+|||+|||+||+.||..|...
T Consensus         3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~~   69 (71)
T 2b7v_A            3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence            469999999994     67899987 789999999999999999986 7999999999999999999999754

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.54  E-value=5.5e-15  Score=129.05  Aligned_cols=64  Identities=28%  Similarity=0.324  Sum_probs=59.0

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .||+.||||||+     |.|+++ ++|++|++.|+++|+|+|+.+ . |.|+|||+|||+||+.||+.|...
T Consensus        38 d~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~-G~G~SKK~AEq~AA~~AL~~L~~~  102 (114)
T 2ljh_A           38 NTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-L-GQGRSKKVARIEAAATALRSFIQF  102 (114)
T ss_dssp             CHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-E-eeeCCHHHHHHHHHHHHHHHHHcC
Confidence            489999999984     899987 789999999999999999999 6 599999999999999999999764

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.53  E-value=6.2e-15  Score=135.55  Aligned_cols=72  Identities=28%  Similarity=0.323  Sum_probs=67.0

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ..|||+.||||||++++. |.|+++ ++|++|.+.|+|.|.|+|+.++.|.|.|||+|||+||+.||..|....
T Consensus        12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~   84 (179)
T 1qu6_A           12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEK   84 (179)
T ss_dssp             SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhccc
Confidence            369999999999999997 899987 789999999999999999989889999999999999999999997543

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.50  E-value=3.3e-14  Score=114.71  Aligned_cols=68  Identities=31%  Similarity=0.351  Sum_probs=60.7

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGP   73 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p   73 (470)
                      .|+-|+||+|.+  ..|.|++. ++||+|++.|+++|.|+|..+ . |.|+|||+|||+||+.||+.|....+
T Consensus         6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~L~~~~~   74 (75)
T 3p1x_A            6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-Q-GAGSNKKVAKAYAALAALEKLFPDTP   74 (75)
T ss_dssp             CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCTTCC
T ss_pred             CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-E-EEECCHHHHHHHHHHHHHHHHHccCC
Confidence            367789999986  47899998 799999999999999999988 6 59999999999999999999987654

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.49  E-value=3.8e-14  Score=112.58  Aligned_cols=63  Identities=25%  Similarity=0.293  Sum_probs=56.8

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      .+|+.|||||     .+|.|++. ++||+|++.|+++|+|+|..+ . |.|+|||+|||+||+.||..|..
T Consensus         5 np~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~-G~G~SKK~Aeq~AA~~al~~L~~   68 (71)
T 2b7v_A            5 NPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-E-GSGRNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             CHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-E-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-E-EeeCCHHHHHHHHHHHHHHHHHh
Confidence            4799999993     57999987 789999999999999999876 5 59999999999999999999865

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.47  E-value=9.1e-14  Score=112.17  Aligned_cols=65  Identities=32%  Similarity=0.312  Sum_probs=56.1

Q ss_pred             hhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        88 pKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      .|+.|++|+|..  ..|.|+++ ++|++|++.|++.|.|+|..+ .|.|+|||+|||+||+.||+.|..
T Consensus         6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~   71 (75)
T 3p1x_A            6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFP   71 (75)
T ss_dssp             CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCT
T ss_pred             CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHc
Confidence            355566666654  57899998 789999999999999999998 799999999999999999999853

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.46  E-value=6.4e-14  Score=132.04  Aligned_cols=69  Identities=32%  Similarity=0.309  Sum_probs=65.8

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK  154 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk  154 (470)
                      ..|||+.||||||++++..|.|+++ ++|++|.+.|+|.|.|+|+ ++.|.|.|||+|||.||+.||..|+
T Consensus       149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~  218 (221)
T 2nug_A          149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE  218 (221)
T ss_dssp             CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhh
Confidence            4699999999999999999999987 7899999999999999999 9999999999999999999999985

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.45  E-value=1.4e-13  Score=132.58  Aligned_cols=71  Identities=30%  Similarity=0.310  Sum_probs=66.8

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ..|||+.||||||++++..|.|+++ ++|++|.+.|+|.|.|+|+.++.|.|.|||+|||.||+.||..|..
T Consensus       178 ~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~  249 (252)
T 1o0w_A          178 LFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLK  249 (252)
T ss_dssp             CSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred             ccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            4699999999999999999999997 7899999999999999999999999999999999999999999853

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.44  E-value=8.7e-14  Score=131.13  Aligned_cols=68  Identities=29%  Similarity=0.372  Sum_probs=63.1

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      .||+.||||||++++.+|.|++. ++|++|.+.|+|.|+++|+ ++.| .|+|||+||+.||+.||+.|..
T Consensus       151 ~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G-~G~skK~Ae~~AA~~AL~~L~~  219 (221)
T 2nug_A          151 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLG-EGKSKKEAEQRAAEELIKLLEE  219 (221)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEE-ecCCHHHHHHHHHHHHHHHhhc
Confidence            37999999999999999999987 7899999999999999999 8885 9999999999999999999863

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.43  E-value=1.5e-13  Score=132.42  Aligned_cols=70  Identities=30%  Similarity=0.358  Sum_probs=64.1

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .||+.||||||++++..|.|++. ++||+|++.|+|.|.++|+.++.| .|.|||+||+.||+.||..|..+
T Consensus       180 dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~  250 (252)
T 1o0w_A          180 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG-KGRTKKEAEKEAARIAYEKLLKE  250 (252)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhhc
Confidence            37999999999999989999998 789999999999999999999885 99999999999999999999754

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.41  E-value=4.7e-13  Score=128.40  Aligned_cols=71  Identities=25%  Similarity=0.237  Sum_probs=66.0

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      ...|||+.||||||++++.+|.|+++ ++|++  +.|+|.|.|+|..++.|.|.|||+|||+||+.||..|...
T Consensus        20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~   91 (232)
T 2yt4_A           20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   91 (232)
T ss_dssp             TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence            45799999999999999999999997 68887  8999999999999999999999999999999999999653

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.36  E-value=5.9e-14  Score=135.47  Aligned_cols=72  Identities=35%  Similarity=0.340  Sum_probs=0.0

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ...|||+.||||||++++..|.|+++ ++|++|.+.|+|.|.|+|+.++.|.|.|||+|||.||+.||+.|+.
T Consensus       175 ~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~  247 (248)
T 3n3w_A          175 LIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA  247 (248)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             cccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence            34799999999999999999999997 7899999999999999999999999999999999999999999875

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.34  E-value=8.2e-14  Score=132.95  Aligned_cols=73  Identities=32%  Similarity=0.447  Sum_probs=0.0

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ..|||+.||||||++++..|.|++..+|++|.+.|+|.|.|+|+.++.|.|.|||+||++||+.||+.|....
T Consensus       161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~  233 (242)
T 2a11_A          161 GLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD  233 (242)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             cCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence            4699999999999999999999998899999999999999999998899999999999999999999997544

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.33  E-value=1.1e-13  Score=133.55  Aligned_cols=68  Identities=29%  Similarity=0.521  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      ||+.||||||++++.+|+|++. ++|++|++.|+|.|+|+|+.++.| .|.|||+||+.||+.||+.|..
T Consensus       179 pks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~  247 (248)
T 3n3w_A          179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARA-IAGSKKEAQQMAAKIALEKLGA  247 (248)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHc
Confidence            8999999999999999999997 889999999999999999988885 9999999999999999998864

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.32  E-value=1.4e-13  Score=131.36  Aligned_cols=70  Identities=31%  Similarity=0.419  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG   72 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~   72 (470)
                      ||+.||||||++++..|+|++..+|++|.+.|+|.|+++|+.++.| .|.|||+||+.||+.||+.|...+
T Consensus       164 pkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~skk~Ae~~AA~~AL~~L~~~~  233 (242)
T 2a11_A          164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSG-VGRSKKEAEQKAAAAAWKALEVLD  233 (242)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhhcc
Confidence            7999999999999989999988899999999999999999988885 899999999999999999997653

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.17  E-value=4.4e-11  Score=114.77  Aligned_cols=69  Identities=32%  Similarity=0.392  Sum_probs=62.4

Q ss_pred             CchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           86 GVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        86 ~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      .|+|+.|++|++.  +..|.|+++ ++|++|.+.|+|.|.|+|..+ .|.|.|||+|||+||+.||..|....
T Consensus         4 ~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~~   73 (236)
T 2l3j_A            4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQFP   73 (236)
T ss_dssp             CCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhcc
Confidence            5899999999976  567899997 689999999999999999986 79999999999999999999997543

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=98.91  E-value=1.4e-10  Score=117.36  Aligned_cols=69  Identities=23%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             CCchhhHHHHHHHHhCCCC-CeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           85 TGVYKNLLQEIAQRVGAPL-PQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~l-P~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      ..|||+.||||||++++.. |.|++. ++|+     |++.|.|+|+.++.|.|.|||+|||.||+.||+.|+....
T Consensus       253 ~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~~k  323 (341)
T 3rv0_A          253 NKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELLRK  323 (341)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhh
Confidence            4699999999999999765 589987 5664     9999999999999999999999999999999999977644

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=98.85  E-value=2.7e-10  Score=115.19  Aligned_cols=64  Identities=27%  Similarity=0.329  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHcCCCC-CceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            2 YKNQLQELAQRSCFNL-PSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         2 yKS~LQElcQK~g~~l-PeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      ||+.||||||++++.. |.|++. +.|+     |++.|+++|+.++.| .|.|||+|||.||+.||+.|...
T Consensus       256 ~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G-~G~SKK~AEq~AA~~AL~~L~~~  321 (341)
T 3rv0_A          256 AKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEA-EGNSIREAEHRAAMKVLENDELL  321 (341)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHhhhh
Confidence            7999999999998765 599987 6664     999999999999885 99999999999999999998764

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=98.58  E-value=5.2e-08  Score=93.79  Aligned_cols=67  Identities=18%  Similarity=0.106  Sum_probs=52.9

Q ss_pred             CchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           86 GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        86 ~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      .++|+.||||++.... .+.|.  ..|..|.+.|+|.|.|+|..++.|.|.|||+|||.||+.||+.|+.
T Consensus       197 ~~~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~  263 (265)
T 3c4b_A          197 NVPRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA  263 (265)
T ss_dssp             HSCCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            3567777777776542 22232  3445789999999999999889999999999999999999999964

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=98.51  E-value=6.6e-08  Score=93.06  Aligned_cols=66  Identities=20%  Similarity=0.142  Sum_probs=52.6

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      +|+.||||+|.+.. .+.|.  ..|..|++.|++.|.++|..++.| .|+|||+|||.||+.||+.|...
T Consensus       199 ~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~G-~G~SkK~Aeq~AA~~AL~~l~~~  264 (265)
T 3c4b_A          199 PRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFKG-VGRSYRIAKSAAARRALRSLKAN  264 (265)
T ss_dssp             CCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEEE-EESSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEEE-eeCCHHHHHHHHHHHHHHHHhhC
Confidence            56778888877642 23333  345579999999999999988884 99999999999999999998653

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=95.10  E-value=0.032  Score=47.38  Aligned_cols=71  Identities=15%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             CchhhHHHHHHHHhC-----CCCCeEEeeccCCCCCCeEEEEEEECCE----EeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154           86 GVYKNLLQEIAQRVG-----APLPQYTTIRSGLGHLPVFTGIVELAGI----AFTGEPAKNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        86 ~NpKS~LQE~cQK~~-----l~lP~Ye~vesGP~H~p~Ft~tV~I~G~----~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      .+.++.|+.||++.-     ...|.|.+.+... ....| |+|.+-..    .+.+..-.|||.||+.||.+|...|..+
T Consensus         4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~   81 (102)
T 2kou_A            4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNL   81 (102)
T ss_dssp             SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHC
Confidence            467899999999874     2467888642111 12367 88887542    2333355999999999999999999887


Q ss_pred             hc
Q 012154          157 AK  158 (470)
Q Consensus       157 ~~  158 (470)
                      +.
T Consensus        82 G~   83 (102)
T 2kou_A           82 GV   83 (102)
T ss_dssp             CS
T ss_pred             CC
Confidence            74

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=90.07  E-value=0.43  Score=40.42  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHcC-----CCCCceEEeeeCCCCCCcEEEEEEECC-----EEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154            3 KNQLQELAQRSC-----FNLPSYTCIREGPDHAPRFKATVNFNG-----EIFESPHYCSTLRQAEHSAAEVALSSLSHRG   72 (470)
Q Consensus         3 KS~LQElcQK~g-----~~lPeYel~eeGP~H~prFtv~V~VnG-----e~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~   72 (470)
                      .+.|+.||++.-     ...|.|.+..... ....| |+|.+-.     ...|.  .-.|||.||+.||-+|...|-+.|
T Consensus         7 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~--~~~sk~~AK~sAAf~Ac~~L~~~G   82 (102)
T 2kou_A            7 ISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESS--LLPSTEAAKKDACLKAVHELHNLG   82 (102)
T ss_dssp             HHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEE--EESSHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCC--ccccHHHHHHHHHHHHHHHHHHCC
Confidence            578999999963     2358888652111 12367 8888842     22232  349999999999999999998766


Q ss_pred             C
Q 012154           73 P   73 (470)
Q Consensus        73 p   73 (470)
                      .
T Consensus        83 ~   83 (102)
T 2kou_A           83 V   83 (102)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=84.74  E-value=1.1  Score=50.92  Aligned_cols=41  Identities=22%  Similarity=0.256  Sum_probs=36.0

Q ss_pred             eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154          118 VFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus       118 ~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      .|.|.+.+-+..+-.|..+-||+|||.||+.||+.|+..+.
T Consensus        58 ~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~~g~~~~   98 (950)
T 3htx_A           58 LYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGIRPQ   98 (950)
T ss_dssp             EEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTTTTSTTT
T ss_pred             eEEEEeeCCCceEecchhhccccHHHHHHHHHHHHhCCCcc
Confidence            89999999887766789999999999999999999887544

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=83.49  E-value=1  Score=51.24  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=33.0

Q ss_pred             cEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154           32 RFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus        32 rFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .|.|.+.+-+..+-+ +..+-||+|||.||+.||++|+..
T Consensus        58 ~~~c~~~lp~~~~~~-~~~~~kkd~eq~aa~~al~~~g~~   96 (950)
T 3htx_A           58 LYRCHLQLPEFSVVS-NVFKKKKDSEQSAAELALDKLGIR   96 (950)
T ss_dssp             EEEEEEECSSCEEEC-CCBSCHHHHHHHHHHHHHTTTTST
T ss_pred             eEEEEeeCCCceEec-chhhccccHHHHHHHHHHHHhCCC
Confidence            788888887666656 489999999999999999999863

>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.88  E-value=2.2  Score=37.40  Aligned_cols=76  Identities=21%  Similarity=0.128  Sum_probs=50.1

Q ss_pred             ccccCCchhhHHHHHHHHhCCC--CCeEEee--ccCCCCCCeEEEEEEEC---CEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154           81 ILDETGVYKNLLQEIAQRVGAP--LPQYTTI--RSGLGHLPVFTGIVELA---GIAFTGEPAKNKKQAEKNAAMAAWTSL  153 (470)
Q Consensus        81 i~D~~~NpKS~LQE~cQK~~l~--lP~Ye~v--esGP~H~p~Ft~tV~I~---G~~f~~G~GkSKKeAKQ~AAk~ALe~L  153 (470)
                      .+.+-..+|+.|....|+.-..  .-.|.+.  .+|.   ++=.|++.+.   -.+| .|.|+.|-+||.+||-.|+..|
T Consensus        12 ~L~~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~---k~K~~tl~l~WP~~mef-~a~G~rK~eAE~kAAA~AC~kL   87 (119)
T 2db2_A           12 LLKEFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGP---KKKKVTLHIKWPKSVEV-EGYGSKKIDAERQAAAAACQLF   87 (119)
T ss_dssp             STTTCSCHHHHHHHHHHHHTTHHHHHHHEEEEECCSS---SSEEEEEEECSSSCEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCChHHHHHHHHHHHHccCchhhheeEEeecCC---ceeEEEEEecCCCcEEE-EeeccchHHHHHHHHHHHHHHH
Confidence            3445568999999988765321  0122221  2332   2235555553   3445 4799999999999999999999


Q ss_pred             Hhhhccc
Q 012154          154 KQLAKET  160 (470)
Q Consensus       154 k~~~~e~  160 (470)
                      +.+..-.
T Consensus        88 K~Lgll~   94 (119)
T 2db2_A           88 KGWGLLG   94 (119)
T ss_dssp             HHHTSSC
T ss_pred             HHcCccC
Confidence            9998744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	470
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	2e-15
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	1e-14
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	3e-14
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	1e-12
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	3e-14
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	1e-12
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	6e-14
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	3e-13
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	4e-13
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	9e-13
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	9e-13
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	3e-10
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	7e-11
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	5e-09
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	9e-11
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	9e-11
d1t4oa_	81	d.50.1.1 (A:) RNase III, C-terminal domain {Baker'	4e-10
d1t4oa_	81	d.50.1.1 (A:) RNase III, C-terminal domain {Baker'	3e-08
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	5e-10
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	9e-09
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	8e-10
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	3e-09
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	1e-09
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	6e-09
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	3e-09
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	1e-08
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	9e-09
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	6e-08
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	1e-08
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	1e-07
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	1e-07
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	3e-07
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	1e-07
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	5e-07
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	3e-07
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	5e-06
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	3e-06
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	4e-06

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.4 bits (167), Expect = 2e-15
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
           YK  LQEI Q      P+Y  +         +F   V + G        + KK+AEK AA
Sbjct: 2   YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAA 61

Query: 147 MAAWTSL 153
             A+  L
Sbjct: 62  RIAYEKL 68

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
          YK  LQE+ Q      P Y  +R    D    F   V  NG+   +     T ++AE  A
Sbjct: 2  YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGK-GRTKKEAEKEA 60

Query: 61 AEVALSSL 68
          A +A   L
Sbjct: 61 ARIAYEKL 68

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.8 bits (160), Expect = 3e-14
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 83  DETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQA 141
           D  G Y + L +  Q  G     Y  +  SG  H   FT  V +    F     ++K++A
Sbjct: 4   DTPGFYMDKLNKYRQMHG-VAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEA 62

Query: 142 EKNAAMAAWTSLKQLAKETASSS 164
              AA  A   L    K    +S
Sbjct: 63  RNAAAKLAVDILDNENKVDCHTS 85

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (148), Expect = 1e-12
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
          Y ++L +  Q     +        GP H  RF   V  + + F      S  ++A ++AA
Sbjct: 9  YMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSK-QEARNAAA 67

Query: 62 EVALSSLSHRGPSPS 76
          ++A+  L +      
Sbjct: 68 KLAVDILDNENKVDC 82

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 65.0 bits (158), Expect = 3e-14
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
           YK +LQEI Q+     P+Y  I   G  H   F    ++      GE  K+KK+AE+ AA
Sbjct: 2   YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE-GKSKKEAEQRAA 60

Query: 147 MAAWTSLK 154
                 L+
Sbjct: 61  EELIKLLE 68

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 60.8 bits (147), Expect = 1e-12
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
          YK  LQE+ Q+     P Y  I   GP H  +F                  + ++AE  A
Sbjct: 2  YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLG--EGKSKKEAEQRA 59

Query: 61 AEVALSSL 68
          AE  +  L
Sbjct: 60 AEELIKLL 67

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.6 bits (157), Expect = 6e-14
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
           Y  L+   AQ+    +               F    ++    +       K++A++ AA 
Sbjct: 1   YIGLVNSFAQKKKLSVNYEQC-EPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAK 59

Query: 148 AAWTSLKQLAKETASSS 164
            A+  L +   +TA +S
Sbjct: 60  EAYQKLLKSPPKTAGTS 76

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
          Y   +   AQ+   ++  Y       +   RF         ++ +     T ++A+  AA
Sbjct: 1  YIGLVNSFAQKKKLSVN-YEQCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAA 58

Query: 62 EVALSSLSHRGPSPSLAA 79
          + A   L    P  +  +
Sbjct: 59 KEAYQKLLKSPPKTAGTS 76

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 4e-13
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
          +  +L    Q+    L        GP H  RF   V  +G  F      S  ++A+++AA
Sbjct: 15 FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK-KEAKNAAA 73

Query: 62 EVALSSLSHRGPSPS 76
          ++A+  L+    + S
Sbjct: 74 KLAVEILNKEKKAVS 88

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 9e-13
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 86  GVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKN 144
           G +   L    Q+ G  + +Y  +  SG  H   FT  V + G  F     ++KK+A+  
Sbjct: 13  GFFMEELNTYRQKQG-VVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNA 71

Query: 145 AAMAAWTSLKQLAKETAS 162
           AA  A   L +  K  + 
Sbjct: 72  AAKLAVEILNKEKKAVSP 89

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 9e-13
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
              +L E  QRV    P Y            F   V + G+ +    A +KK A+  AA 
Sbjct: 11  EVCILHEYMQRVLKVRPVYNFF-ECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAAR 69

Query: 148 AAWTSLKQLAKETASSSSE 166
           A    L+ L  +    +SE
Sbjct: 70  AT---LEILIPDFVKQTSE 85

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 3e-10
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
              L E  QR     P Y    E  + +  F A+V  +G  + S    S  + A++ AA
Sbjct: 11 EVCILHEYMQRVLKVRPVYNFF-ECENPSEPFGASVTIDGVTYGSGTASSK-KLAKNKAA 68

Query: 62 EVALSSL 68
             L  L
Sbjct: 69 RATLEIL 75

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.6 bits (134), Expect = 7e-11
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
              L EL          Y  + E G  HA  F  +V  +G+ F         + A+  A
Sbjct: 6  PVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF--EGSGRNKKLAKARA 58

Query: 61 AEVALSSL 68
          A+ AL+++
Sbjct: 59 AQSALATV 66

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.6 bits (121), Expect = 5e-09
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
              +L E+         +Y  +  SG  H   F   V + G  F G   +NKK A+  AA
Sbjct: 6   PVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFFEGS-GRNKKLAKARAA 59

Query: 147 MAAWTSLKQL 156
            +A  ++  L
Sbjct: 60  QSALATVFNL 69

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 9e-11
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 80  RILDETGV-YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKN 137
           +ILD   +   N L  + Q    P  QY  + +SG  H PVFT  V++ G  +      +
Sbjct: 2   KILDSKAIDLMNALMRLNQI--RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEA-SGPS 58

Query: 138 KKQAEKNAAMAAWTSLK 154
           KK A+ + A+    ++ 
Sbjct: 59  KKTAKLHVAVKVLQAMG 75

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (134), Expect = 9e-11
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 2  YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
            N L  L Q        Y  + + GP HAP F  +V+ +G  +       + + A+   
Sbjct: 11 LMNALMRLNQI--RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY--EASGPSKKTAKLHV 66

Query: 61 AEVALSSLSHRGPSPS 76
          A   L ++ +     +
Sbjct: 67 AVKVLQAMGYPTGFDA 82

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (129), Expect = 4e-10
 Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 1/67 (1%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
           K QL  L   +      Y  +++     P                     ++ A   AA
Sbjct: 8  AKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 66

Query: 62 EVALSSL 68
          E AL   
Sbjct: 67 ENALRDK 73

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 2/72 (2%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEP-AKNKKQAEKNAA 146
            K  L  +          Y T++      P       +      G    +N K A   AA
Sbjct: 8   AKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 66

Query: 147 MAAWTSLKQLAK 158
             A    K L  
Sbjct: 67  ENALRDKKMLDF 78

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 53.2 bits (127), Expect = 5e-10
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 89  KNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
              LQE+A + G  LP+YT  + SG  H   FT    +     TG    +K+ A++ AA 
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSG-TSKQVAKRVAAE 61

Query: 148 AAWTSLK 154
              T  K
Sbjct: 62  KLLTKFK 68

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 49.7 bits (118), Expect = 9e-09
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 1  MYKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHS 59
          M    LQELA +  + LP YT  +E GP H   F  T      +       ++ + A+  
Sbjct: 1  MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE--TGSGTSKQVAKRV 58

Query: 60 AAEVALSSL 68
          AAE  L+  
Sbjct: 59 AAEKLLTKF 67

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (127), Expect = 8e-10
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 3  KNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
          KN L +L +        Y  + + GP HAP F  +V  NG++FE      T ++A+  AA
Sbjct: 7  KNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFE--GSGPTKKKAKLHAA 62

Query: 62 EVALSSL 68
          E AL S 
Sbjct: 63 EKALRSF 69

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 89  KNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
           KN L ++ +    P  QY  + ++G  H P+F   VE+ G  F G     KK+A+ +AA 
Sbjct: 7   KNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGS-GPTKKKAKLHAAE 63

Query: 148 AAWTSLKQL 156
            A  S  Q 
Sbjct: 64  KALRSFVQF 72

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (128), Expect = 1e-09
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIV-----ELAGIAFTGEPAKNKKQAE 142
            K  L +  Q+      +Y   + G  H   F   +     +L    F  E   NKK A 
Sbjct: 28  AKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAA 86

Query: 143 KNAAMAAWTSLKQLAKETASSS 164
           ++ A++    L  L    A SS
Sbjct: 87  QSCALSLVRQLYHLGVIEAYSS 108

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (123), Expect = 6e-09
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 2   YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHY----CSTLRQAE 57
            K +L +  Q+       Y   + GPDH   F A +    +      +     S  + A 
Sbjct: 28  AKARLNQYFQKE-KIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAA 86

Query: 58  HSAAEVALSSLSHRG 72
            S A   +  L H G
Sbjct: 87  QSCALSLVRQLYHLG 101

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.1 bits (122), Expect = 3e-09
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
            +Q+ E+  +       +  +RE GP H   F         + E     +  + ++  A
Sbjct: 9  PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEG--EGNGKKVSKKRA 65

Query: 61 AEVALSSLSH 70
          AE  L  L  
Sbjct: 66 AEKMLVELQK 75

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
             + + EI  +    +        G  H+  F     +  I   GE    KK ++K AA 
Sbjct: 9   PISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEG-NGKKVSKKRAAE 67

Query: 148 AAWTSLKQL 156
                L++L
Sbjct: 68  KMLVELQKL 76

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (123), Expect = 9e-09
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
           K  L E  +R     P Y  ++        F + V    + ++S  +  + + AE +AA
Sbjct: 28 PKMCLLEWCRREKLPQPVYETVQ--RTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAA 85

Query: 62 EVALSSL 68
           V L S 
Sbjct: 86 IVCLRSQ 92

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (117), Expect = 6e-08
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 1/81 (1%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
            K  L E  +R   P P Y T++  +  +      V       +    K+KK AE+ AA+
Sbjct: 28  PKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQ-STLWDKSKKLAEQTAAI 86

Query: 148 AAWTSLKQLAKETASSSSEPE 168
               S           S    
Sbjct: 87  VCLRSQGLPEGRLGEESPSLN 107

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
           KN L     +     P+Y     G  +  +F   V   G  +      +  + A+ +AA
Sbjct: 8  IKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 62 EVALSSLSHRGPSPS 76
             ++ L       S
Sbjct: 67 RDFVNYLVRINEVKS 81

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEP-AKNKKQAEKNAA 146
            KN L     +     P Y     G  +   F   V + G  + G   + NKK A+ NAA
Sbjct: 8   IKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 147 MAAWTSLKQLAKETASS 163
                 L ++ +  +  
Sbjct: 67  RDFVNYLVRINEVKSEE 83

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIRE-GPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
              LQEL  +  + LP YT  +E GP H   F  T      I       ++ + A+ +A
Sbjct: 11 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIE--IGSGTSKKLAKRNA 68

Query: 61 AEVALSSL 68
          A   L  +
Sbjct: 69 AAKMLLRV 76

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRS-GLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAA 146
               LQE+  + G  LP+YT  +  G  H   FT    +      G    +KK A++NAA
Sbjct: 11  PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG-TSKKLAKRNAA 69

Query: 147 MAAWTSL 153
                 +
Sbjct: 70  AKMLLRV 76

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
          Y   +  +AQ+    +    C   G      F        + +      ST ++A+  AA
Sbjct: 16 YIGLINRIAQKKRLTVNYEQC-ASGVHGPEGFHYKCKMGQKEYSI-GTGSTKQEAKQLAA 73

Query: 62 EVALSSLSHRGPSPS 76
          ++A   +     + S
Sbjct: 74 KLAYLQILSEE-TGS 87

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 86  GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNA 145
           G Y  L+  IAQ+    +       SG+     F    ++    ++      K++A++ A
Sbjct: 14  GNYIGLINRIAQKKRLTVNYEQC-ASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLA 72

Query: 146 AMAAWTSLKQ 155
           A  A+  +  
Sbjct: 73  AKLAYLQILS 82

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 3e-07
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 2  YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
              L E   ++           +   H P F   V             ++ + A+H AA
Sbjct: 4  PIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCT--GEGTSKKLAKHRAA 61

Query: 62 EVALSSL 68
          E A++ L
Sbjct: 62 EAAINIL 68

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 5e-06
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 88  YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
              +L E   +                H+P FT  V +  I  TGE   +KK A+  AA 
Sbjct: 4   PIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEG-TSKKLAKHRAAE 62

Query: 148 AAWTSLK 154
           AA   LK
Sbjct: 63  AAINILK 69

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 89  KNLLQEIAQRVGAPLPQYTTIR-SGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAM 147
            + L +I Q      P Y  +   G+     F   V++     TG    NKK A+KNAA 
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTG-PNKKIAKKNAAE 67

Query: 148 AAWTSLKQLAKETASSSS 165
           A    L   A  +   S 
Sbjct: 68  AMLLQLGYKASTSLQDSG 85

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 3  KNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAE 62
           ++L ++ Q      P Y  + E      R +  +        +       + A+ +AAE
Sbjct: 9  ISRLAQIQQARKEKEPDYILLSE-RGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAE 67

Query: 63 VALSSLSHRGPSPS 76
            L  L ++  +  
Sbjct: 68 AMLLQLGYKASTSL 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	470
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.77
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.76
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.76
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.73
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.73
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.73
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.72
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.72
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.71
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.71
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.7
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.7
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.7
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.69
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.69
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.68
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.68
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.67
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.66
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.66
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.66
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.65
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.62
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.61
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.61
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.6
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.58
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.56
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.51
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.5
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.42
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.4
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.4
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.38
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.35
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.3

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=4.1e-19  Score=138.34  Aligned_cols=67  Identities=31%  Similarity=0.364  Sum_probs=64.7

Q ss_pred             chhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154           87 VYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL  153 (470)
Q Consensus        87 NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L  153 (470)
                      |||+.||||||++++.+|.|++. .+|++|.+.|++.|.|+|..++.|.|+|||+|||+||+.||+.|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            79999999999999999999987 78999999999999999999999999999999999999999987

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=6.4e-19  Score=137.20  Aligned_cols=67  Identities=31%  Similarity=0.381  Sum_probs=63.5

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHh
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL   68 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L   68 (470)
                      -||+.||||||++++.+|.|++. .+|++|++.|++.|.++|..++. |.|+|||+||++||+.||+.|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~-g~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIAT-GKGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEE-EEeCCHHHHHHHHHHHHHHHh
Confidence            38999999999999999999987 78999999999999999999987 499999999999999999987

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.76  E-value=7e-19  Score=137.86  Aligned_cols=67  Identities=30%  Similarity=0.385  Sum_probs=63.2

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhh
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLS   69 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~   69 (470)
                      |+|+.||||||++++.+|.|+++ ++|++|++.|+++|.|+|..+ . |.|+|||+||++||+.||+.|.
T Consensus         1 ~Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~-g~g~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-T-GSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-e-cCcCcHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999988 789999999999999999875 5 5999999999999999999985

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.73  E-value=3.7e-18  Score=133.69  Aligned_cols=66  Identities=30%  Similarity=0.289  Sum_probs=62.8

Q ss_pred             hhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 012154           88 YKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK  154 (470)
Q Consensus        88 pKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk  154 (470)
                      ||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.|+|+.+ .|.|+|||+||++||+.||+.|+
T Consensus         2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~g~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-ecCcCcHHHHHHHHHHHHHHHhc
Confidence            7999999999999999999998 789999999999999999976 68999999999999999999986

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.73  E-value=2.5e-18  Score=134.02  Aligned_cols=67  Identities=33%  Similarity=0.336  Sum_probs=63.1

Q ss_pred             chhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 012154           87 VYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLK  154 (470)
Q Consensus        87 NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk  154 (470)
                      |||+.||||||++++.+|.|++. .+|++|.+.|+|.|.|+|.. +.|.|+|||+|||+||+.||+.|+
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCEE-EEEecCCHHHHHHHHHHHHHHHhC
Confidence            79999999999999999999987 78999999999999999986 568999999999999999999884

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3.2e-18  Score=139.34  Aligned_cols=75  Identities=28%  Similarity=0.303  Sum_probs=69.0

Q ss_pred             ccCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           83 DETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        83 D~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      |..+|||++||||||++++. |.|+++ .+|++|.+.|+|.|.|+|..++.|.|+|||+||+.||+.||..|.....
T Consensus         4 ~~~~~yk~~L~E~~Qk~~~~-~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g~sKK~Aeq~AA~~aL~~L~~~~~   79 (85)
T d1x49a1           4 DTPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK   79 (85)
T ss_dssp             CCTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCchhHHHHHHHHHHhcCCC-CeEEEEEecCCCCCceEEEEEecCceEeeccccccHHHHHHHHHHHHHHHHHHcCc
Confidence            56789999999999999995 789887 7899999999999999999998899999999999999999999977654

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=5.5e-18  Score=135.65  Aligned_cols=72  Identities=18%  Similarity=0.226  Sum_probs=66.1

Q ss_pred             hhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhccc
Q 012154           88 YKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAKET  160 (470)
Q Consensus        88 pKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~e~  160 (470)
                      ||++||||||++++.+ .|++.++|++|.+.|+|+|.|+|+.|+.|.|+|||+|||+||+.||+.|.......
T Consensus         1 Y~s~L~E~~Qk~~~~~-~~~~~~~G~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~~~~~~~   72 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKT   72 (76)
T ss_dssp             HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             ChHHHHHHHHHhCCCC-ccccCCcCCCCCCcEEEEEEECCEEeCCcCccHHHHHHHHHHHHHHHHHHccCCCC
Confidence            7999999999999977 57777889999999999999999999999999999999999999999998776543

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.2e-17  Score=132.68  Aligned_cols=69  Identities=28%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSL  153 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~L  153 (470)
                      ...|||+.||||||++++.+|.|+++ ++|++|.+.|+|.|.++++. +.|.|+|||+|||+||+.||+.|
T Consensus         7 ~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1           7 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGSGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEeccee-eccccccHHHHHHHHHHHHHHhC
Confidence            45799999999999999999999987 78999999999999999986 57899999999999999999986

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.8e-18  Score=132.40  Aligned_cols=69  Identities=28%  Similarity=0.246  Sum_probs=63.9

Q ss_pred             CchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154           86 GVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        86 ~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      .||++.||||||++++ .|.|+++ ++|++|++.|+|+|.|+|+ ++.|.|+|||+||++||+.||..|+..
T Consensus         2 K~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~al~~L~~~   71 (73)
T d2dixa1           2 KTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAAEAAINILKAN   71 (73)
T ss_dssp             CCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEeccccHHHHHHHHHHHHHHHHHhc
Confidence            5899999999999987 7999987 7899999999999999998 557899999999999999999999764

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=7.6e-18  Score=134.84  Aligned_cols=71  Identities=18%  Similarity=0.285  Sum_probs=65.0

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCC
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPS   74 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS   74 (470)
                      ||+.||||||++++.+ .|.+.++|++|.+.|+++|.|||+.|+.| .|.|||+||++||+.||..|....+.
T Consensus         1 Y~s~L~E~~Qk~~~~~-~~~~~~~G~~h~~~F~~~v~v~~~~~~~g-~G~sKK~Aeq~AA~~Al~~L~~~~~~   71 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAAKEAYQKLLKSPPK   71 (76)
T ss_dssp             HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSCEEEEE-EESSHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ChHHHHHHHHHhCCCC-ccccCCcCCCCCCcEEEEEEECCEEeCCc-CccHHHHHHHHHHHHHHHHHHccCCC
Confidence            8999999999998764 78777889999999999999999999884 99999999999999999999987653

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.70  E-value=7.2e-18  Score=131.37  Aligned_cols=67  Identities=30%  Similarity=0.381  Sum_probs=61.7

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhh
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLS   69 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~   69 (470)
                      -||+.||||||++++.+|.|++. .+|++|++.|+++|.++|.. +. |.|+|||+||++||+.||+.|.
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~-g~g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TL-GEGKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EE-EEESSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCEE-EE-EecCCHHHHHHHHHHHHHHHhC
Confidence            38999999999999999999987 88999999999999999975 55 4899999999999999999874

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.2e-18  Score=139.06  Aligned_cols=73  Identities=29%  Similarity=0.350  Sum_probs=67.0

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      .+|||+.||||||++++ .|.|.++ .+|++|.+.|+|.|.|+|..++.|.|.|||+||++||+.||+.|.....
T Consensus        12 ~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Aeq~AA~~aL~~L~~~~~   85 (90)
T d1qu6a1          12 AGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKK   85 (90)
T ss_dssp             SCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCS
T ss_pred             CCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeeccCCCcHHHHHHHHHHHHHHHHHhhCC
Confidence            56999999999999988 6888886 8899999999999999999998999999999999999999999976543

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.4e-18  Score=139.42  Aligned_cols=72  Identities=22%  Similarity=0.395  Sum_probs=65.9

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCCC
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGPS   74 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~pS   74 (470)
                      .||++||||||++++ +|.|.+. .+|++|++.|+|.|.|+|+.+++ |.|.|||+||++||+.||+.|..+..+
T Consensus        14 ~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~-g~G~sKK~Aeq~AA~~aL~~L~~~~~~   86 (90)
T d1qu6a1          14 FFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPE-GEGRSKKEAKNAAAKLAVEILNKEKKA   86 (90)
T ss_dssp             SHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCE-EECCSSHHHHHHHHHHHHHHHHSCCSC
T ss_pred             CHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeec-cCCCcHHHHHHHHHHHHHHHHHhhCCC
Confidence            589999999999987 6899987 88999999999999999999987 499999999999999999999887543

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3e-17  Score=129.61  Aligned_cols=68  Identities=24%  Similarity=0.291  Sum_probs=61.9

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .|++.||||||++++ +|.|++. ++|++|++.|+++|.|+|. ++. |.|+|||+||++||+.||..|...
T Consensus         3 ~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~-g~g~sKK~Aeq~AA~~al~~L~~~   71 (73)
T d2dixa1           3 TPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCT-GEGTSKKLAKHRAAEAAINILKAN   71 (73)
T ss_dssp             CHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEE-ECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EEE-eccccHHHHHHHHHHHHHHHHHhc
Confidence            479999999999987 7999987 8899999999999999997 456 489999999999999999999764

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.8e-17  Score=134.94  Aligned_cols=72  Identities=26%  Similarity=0.201  Sum_probs=66.7

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ..|||+.||||||+++|.+|.|+++ .+|++|.+.|+|.|.|+|+.+ .|.|+|||+||+.||+.||+.|+...
T Consensus         5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g~g~SKK~Ae~~AA~~aL~~l~~~~   77 (89)
T d1uhza_           5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TGTGPNKKIAKKNAAEAMLLQLGYKA   77 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTSSH
T ss_pred             CCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-cccchHHHHHHHHHHHHHHHHhCccC
Confidence            4699999999999999999999987 789999999999999999987 68999999999999999999996544

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2.9e-17  Score=137.60  Aligned_cols=73  Identities=23%  Similarity=0.247  Sum_probs=66.9

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEe-eecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAF-TGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f-~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      ..|||+.||||||++++. |.|++.+.|++|.+.|+|+|.|+|..| +.|.|.|||+|||+||+.||+.|.....
T Consensus         5 ~~~~Ks~LqE~~qk~k~~-P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~~~   78 (99)
T d1whqa_           5 SSGIKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE   78 (99)
T ss_dssp             CCSSHHHHHHHHHHTTCC-CEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CccHHHHHHHHHHhCCCC-CeEEEecccCCCCceEEEEEEeccccceeccCCccHHHHHHHHHHHHHHHHHHcCC
Confidence            469999999999999984 999988889999999999999999886 6699999999999999999999977654

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2e-17  Score=134.53  Aligned_cols=70  Identities=23%  Similarity=0.357  Sum_probs=64.9

Q ss_pred             cHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154            2 YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRGP   73 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~p   73 (470)
                      ||++||||||++++ .|.|.+. .+|++|++.|+|.|.|+|..++. |.|+|||+||+.||+.||..|.....
T Consensus         9 yk~~L~E~~Qk~~~-~~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~-g~g~sKK~Aeq~AA~~aL~~L~~~~~   79 (85)
T d1x49a1           9 YMDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPE-AKGRSKQEARNAAAKLAVDILDNENK   79 (85)
T ss_dssp             HHHHHHHHHHHHTC-CEEEEEEEEESCSSSCEEEEEEEESSCCCCC-EEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHhcCC-CCeEEEEEecCCCCCceEEEEEecCceEeec-cccccHHHHHHHHHHHHHHHHHHcCc
Confidence            89999999999998 4899887 88999999999999999999977 59999999999999999999988754

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5e-17  Score=129.05  Aligned_cols=66  Identities=29%  Similarity=0.353  Sum_probs=61.2

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHh
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSL   68 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L   68 (470)
                      .||+.||||||++++.+|.|++. +.|++|.+.|++.|.+++.. +. |.|+|||+||++||+.||..|
T Consensus        10 npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~-g~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1          10 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EI-GSGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EE-EEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEeccee-ec-cccccHHHHHHHHHHHHHHhC
Confidence            38999999999999999999987 89999999999999999975 56 599999999999999999876

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=8.9e-17  Score=131.94  Aligned_cols=69  Identities=20%  Similarity=0.220  Sum_probs=63.9

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .+|+.||||||+++|.+|+|+++ ++|++|.+.|+|+|+|+|..+ . |.|+|||+||+.||+.||+.|...
T Consensus         7 ~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~-g~g~SKK~Ae~~AA~~aL~~l~~~   76 (89)
T d1uhza_           7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-T-GTGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-c-ccchHHHHHHHHHHHHHHHHhCcc
Confidence            37999999999999999999987 789999999999999999986 5 589999999999999999999754

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4e-17  Score=133.76  Aligned_cols=73  Identities=21%  Similarity=0.236  Sum_probs=67.2

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ...|||++||||||++++. +.|++.++|++|.+.|+|+|.|+|+.|+.|.|+|||+||++||+.||..|....
T Consensus        12 ~~~n~~s~L~E~~Qk~~~~-~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~~~~   84 (89)
T d1qu6a2          12 SMGNYIGLINRIAQKKRLT-VNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEE   84 (89)
T ss_dssp             CCCCCHHHHHHHHHHSCCE-EEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             cccCHHHHHHHHHHhcCCC-cceeeeccCCCCCCceEEEEEECCccccccccchHHHHHHHHHHHHHHHHHccC
Confidence            4569999999999999996 568888889999999999999999999999999999999999999999997754

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2.3e-17  Score=138.25  Aligned_cols=71  Identities=18%  Similarity=0.199  Sum_probs=64.0

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEE-ecccccCCccHHHHHHHHHHHHHhhccCC
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIF-ESPHYCSTLRQAEHSAAEVALSSLSHRGP   73 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~-gsGG~GsSKKeAEq~AAk~AL~~L~~~~p   73 (470)
                      .||+.||||||++++ +|.|++.+.|++|+++|+++|.|+|..| +. |.|.|||+||++||+.||+.|...+.
T Consensus         7 ~~Ks~LqE~~qk~k~-~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~-g~g~sKK~AEq~AA~~al~~L~~~~~   78 (99)
T d1whqa_           7 GIKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGM-GNSTNKKDAQSNAARDFVNYLVRINE   78 (99)
T ss_dssp             SSHHHHHHHHHHTTC-CCEEEEEEEECSSSEEEEEEEECTTCSCCEE-EEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cHHHHHHHHHHhCCC-CCeEEEecccCCCCceEEEEEEeccccceec-cCCccHHHHHHHHHHHHHHHHHHcCC
Confidence            489999999999987 5999988889999999999999999776 55 58999999999999999999987653

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=3.3e-17  Score=130.56  Aligned_cols=71  Identities=20%  Similarity=0.269  Sum_probs=64.4

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      ...||++.||||||+++++ |.|+++ ++|++|.+.|+|+|.|+|.. +.|.|.|||+|||+||+.||+.|+.+
T Consensus         5 ~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~~-~~g~G~SKK~Aeq~AA~~al~~L~~l   76 (76)
T d1ekza_           5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIV-TEGEGNGKKVSKKRAAEKMLVELQKL   76 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTEE-EEECCCSTTSSSHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeeeE-eeeccCcHHHHHHHHHHHHHHHHHcC
Confidence            3569999999999999998 789987 78999999999999999875 56899999999999999999999753

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3e-16  Score=127.33  Aligned_cols=71  Identities=25%  Similarity=0.238  Sum_probs=63.0

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQ  155 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~  155 (470)
                      ...|||+.||||||+.++.+|.|.+.. +.+|...|+|+|.|+|..++.|.|+|||.||++||+.||+.|..
T Consensus         7 ~~K~p~s~LqE~~Qk~~~~~p~Y~~~~-~~g~~~~F~~~v~i~g~~~~~g~G~sKK~Aeq~AA~~AL~~L~~   77 (85)
T d1x47a1           7 NGKSEVCILHEYMQRVLKVRPVYNFFE-CENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIP   77 (85)
T ss_dssp             TCCCHHHHHHHHHHHHTCSCCEEEEEE-CSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred             CCcCHHHHHHHHHHHhCCCCCCeEEEe-cCCCCCCEEEEEEECCEEEecCCcchHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999873 22355579999999999999999999999999999999999843

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=5.7e-16  Score=132.66  Aligned_cols=72  Identities=22%  Similarity=0.227  Sum_probs=65.5

Q ss_pred             CchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           86 GVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVEL-----AGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        86 ~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I-----~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      .|+|++||||||++++. |.|++.+.|++|.+.|+|+|.|     ++..++.|.|.|||+|||+||+.||+.|..+..
T Consensus        26 ~n~Ks~LqE~~Qk~k~~-p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~g~  102 (113)
T d1uila_          26 ENAKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV  102 (113)
T ss_dssp             HHHHHHHHHHHHHSCCC-CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cCHHHHHHHHHHhCCCC-CceEEeeeccCCCCeEEEEEEEeeeccCCeEEeecccchHHHHHHHHHHHHHHHHHHcCC
Confidence            48999999999999986 8999888899999999999999     566677799999999999999999999988765

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-16  Score=130.07  Aligned_cols=70  Identities=17%  Similarity=0.209  Sum_probs=64.6

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG   72 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~   72 (470)
                      .||++||||||++++. +.|++.+.|++|.+.|.|+|.|+|+.|+.| .|+|||+||+.||+.||..|....
T Consensus        15 n~~s~L~E~~Qk~~~~-~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g-~G~sKK~Akq~AA~~Al~~L~~~~   84 (89)
T d1qu6a2          15 NYIGLINRIAQKKRLT-VNYEQCASGVHGPEGFHYKCKMGQKEYSIG-TGSTKQEAKQLAAKLAYLQILSEE   84 (89)
T ss_dssp             CCHHHHHHHHHHSCCE-EEEEEEEECSSSSSEEEEEEEEETTBCCEE-EESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHhcCCC-cceeeeccCCCCCCceEEEEEECCcccccc-ccchHHHHHHHHHHHHHHHHHccC
Confidence            4899999999999975 689888899999999999999999999885 999999999999999999998764

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=2.3e-16  Score=125.62  Aligned_cols=67  Identities=18%  Similarity=0.255  Sum_probs=60.7

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      .+++.||||||++++. |.|++. ++|++|++.|+|+|+|+|.. +. |.|.|||+||++||+.||+.|..
T Consensus         8 ~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~~-~~-g~G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           8 SPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIV-TE-GEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTEE-EE-ECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeeeE-ee-eccCcHHHHHHHHHHHHHHHHHc
Confidence            3789999999999987 899987 78999999999999999875 55 48999999999999999999864

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.7e-16  Score=124.91  Aligned_cols=68  Identities=25%  Similarity=0.252  Sum_probs=60.0

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      +||+.||||||+.++.+|.|.+.. +.+|...|.++|.|+|..|+.| .|+|||+||++||+.||+.|..
T Consensus        10 ~p~s~LqE~~Qk~~~~~p~Y~~~~-~~g~~~~F~~~v~i~g~~~~~g-~G~sKK~Aeq~AA~~AL~~L~~   77 (85)
T d1x47a1          10 SEVCILHEYMQRVLKVRPVYNFFE-CENPSEPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIP   77 (85)
T ss_dssp             CHHHHHHHHHHHHTCSCCEEEEEE-CSSSSCCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHhCCCCCCeEEEe-cCCCCCCEEEEEEECCEEEecC-CcchHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999873 2335567999999999999874 9999999999999999999854

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=8e-16  Score=134.38  Aligned_cols=69  Identities=23%  Similarity=0.241  Sum_probs=62.3

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      +||+.||||||++++.+|.|++...+  |+++|+++|+|+|+.|++++.++|||+||++||+.||+.|...
T Consensus        27 ~pKs~LqE~~Qk~~~~~P~Y~~~~~~--~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~~   95 (128)
T d1whna_          27 TPKMCLLEWCRREKLPQPVYETVQRT--IDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP   95 (128)
T ss_dssp             CHHHHHHHHHHHTTCCCCCCCEEECS--SSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHhcCCCCCeEEEeecc--cCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCCC
Confidence            58999999999999999999988654  7889999999999999886445899999999999999999754

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.3e-15  Score=130.46  Aligned_cols=69  Identities=28%  Similarity=0.369  Sum_probs=61.8

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEE-----CCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNF-----NGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG   72 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~V-----nGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~   72 (470)
                      ||+.||||||++++. |.|++...|++|++.|+++|.|     ++..++. |.|.|||+|||+||+.||+.|...+
T Consensus        28 ~Ks~LqE~~Qk~k~~-p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~-G~G~sKK~AEq~AA~~~l~~L~~~g  101 (113)
T d1uila_          28 AKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAR-EHGSNKKLAAQSCALSLVRQLYHLG  101 (113)
T ss_dssp             HHHHHHHHHHHSCCC-CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEE-CCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCC-CceEEeeeccCCCCeEEEEEEEeeeccCCeEEee-cccchHHHHHHHHHHHHHHHHHHcC
Confidence            699999999999875 9999888899999999999999     5666666 4999999999999999999997654

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=4.5e-15  Score=129.55  Aligned_cols=72  Identities=26%  Similarity=0.241  Sum_probs=64.1

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHHhhh
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELAGIAFTGEPA-KNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~G~~f~~G~G-kSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ...|||+.||||||++++.+|.|+++..  +|++.|+|+|.|+|+.|+.+.| +|||+|||+||+.||+.|....
T Consensus        24 ~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~--~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~~~   96 (128)
T d1whna_          24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPE   96 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCSS
T ss_pred             CCCCHHHHHHHHHHhcCCCCCeEEEeec--ccCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCCCC
Confidence            4579999999999999999999998865  3778999999999999987765 8999999999999999996443

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=7.6e-15  Score=115.80  Aligned_cols=67  Identities=27%  Similarity=0.288  Sum_probs=60.8

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLA  157 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~  157 (470)
                      ..|+++.|||||++     +.|+++ ++|++|.+.|+|.|.|+|+.| .|.|.|||+||++||+.||+.|.+..
T Consensus         3 ~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L~~~~   70 (71)
T d2b7va1           3 GKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNLH   70 (71)
T ss_dssp             SSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCEEE-EecCCCHHHHHHHHHHHHHHHHHccC
Confidence            57999999999874     579987 889999999999999999998 58999999999999999999997653

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.1e-14  Score=117.10  Aligned_cols=74  Identities=19%  Similarity=0.052  Sum_probs=62.2

Q ss_pred             cCCchhhHHHHHHHHhCCCCCeEEeeccCCCCCCeEEEEEEEC-CEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           84 ETGVYKNLLQEIAQRVGAPLPQYTTIRSGLGHLPVFTGIVELA-GIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        84 ~~~NpKS~LQE~cQK~~l~lP~Ye~vesGP~H~p~Ft~tV~I~-G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      .+.|+|+.||||||+.++. |.|++++.|.+|...|++.|.+. |..++.|.|.|||+|||+||+.||+.++.+..
T Consensus         4 id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~~l~k   78 (81)
T d1t4oa_           4 LDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF   78 (81)
T ss_dssp             CCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cccCHHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEecccchhhHHHHHHHHHHHHhccHHHH
Confidence            4679999999999999996 99999966555556777888875 56677899999999999999999998877653

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=4.3e-14  Score=111.43  Aligned_cols=64  Identities=25%  Similarity=0.298  Sum_probs=57.0

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhcc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHR   71 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~   71 (470)
                      .+++.|||||++     +.|++. ++|++|.+.|+++|.|+|..| . |.|+|||+||++||+.||+.|.+.
T Consensus         5 npv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~-g~G~SKK~Ak~~AA~~aL~~L~~~   69 (71)
T d2b7va1           5 NPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-E-GSGRNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             CHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-E-EEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCEEE-E-ecCCCHHHHHHHHHHHHHHHHHcc
Confidence            368999999864     479987 889999999999999999998 5 589999999999999999998653

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.8e-13  Score=109.99  Aligned_cols=68  Identities=26%  Similarity=0.305  Sum_probs=58.4

Q ss_pred             CCchhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 012154           85 TGVYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQLAK  158 (470)
Q Consensus        85 ~~NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~~~  158 (470)
                      ..|+++.|+|+     .+.|.|+++ ++|++|.+.|+|.|.|+|+.| .|.|.|||+|||+||+.||+.|+....
T Consensus        11 ~~n~~~~L~e~-----~~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~G~SKK~Aeq~AA~~aL~~L~~~~~   79 (84)
T d2dmya1          11 LMNALMRLNQI-----RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYPTG   79 (84)
T ss_dssp             CTHHHHHHHHH-----SCSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCCCS
T ss_pred             ccCHHHHHHHh-----CCCCeEEEEEeeCCCCCCeEEEEEEECCEEE-EcCCCCHHHHHHHHHHHHHHHhCCCCC
Confidence            35777777776     255789997 789999999999999999998 589999999999999999999975544

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=6.3e-14  Score=112.69  Aligned_cols=67  Identities=19%  Similarity=0.222  Sum_probs=57.4

Q ss_pred             cHHHHHHHHHHcCCCCCceEEeeeCCCCCCcEEEEEEE-CCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNF-NGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         2 yKS~LQElcQK~g~~lPeYel~eeGP~H~prFtv~V~V-nGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      +|+.||||||+.|+. |.|++...|.+|...|.+.|.+ +|..++. |.|.|||+|||+||+.||+.+..
T Consensus         8 ~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~-g~g~SKK~AEq~AA~~aL~~~~~   75 (81)
T d1t4oa_           8 AKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGT-GVGRNIKIAGIRAAENALRDKKM   75 (81)
T ss_dssp             HHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEE-EEESSHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEe-cccchhhHHHHHHHHHHHHhccH
Confidence            799999999999986 9999997666677778888887 4566666 59999999999999999998753

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=3.4e-13  Score=106.57  Aligned_cols=67  Identities=33%  Similarity=0.419  Sum_probs=56.0

Q ss_pred             chhhHHHHHHHHhCCCCCeEEee-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhh
Q 012154           87 VYKNLLQEIAQRVGAPLPQYTTI-RSGLGHLPVFTGIVELAGIAFTGEPAKNKKQAEKNAAMAAWTSLKQL  156 (470)
Q Consensus        87 NpKS~LQE~cQK~~l~lP~Ye~v-esGP~H~p~Ft~tV~I~G~~f~~G~GkSKKeAKQ~AAk~ALe~Lk~~  156 (470)
                      ++|+.|+++-+.  ...+.|+++ ++|++|.+.|+|.|.|+|+.| .|.|.|||+||++||+.||+.|.++
T Consensus         5 ~pK~~l~~L~e~--~~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~l~~~   72 (73)
T d2b7ta1           5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF   72 (73)
T ss_dssp             SSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHhc--CCCCEEEEEEeeCCCCCceEEEEEEECCEEE-EcCCCcHHHHHHHHHHHHHHHHhhC
Confidence            456665555433  255789988 789999999999999999998 6899999999999999999999654

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=6.1e-13  Score=105.12  Aligned_cols=66  Identities=35%  Similarity=0.472  Sum_probs=57.4

Q ss_pred             CcHHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhc
Q 012154            1 MYKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSH   70 (470)
Q Consensus         1 myKS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~   70 (470)
                      ++|+.|+++-+.+  ..+.|++. ++|++|++.|+++|+|+|..| . |.|+|||+||++||+.||+.|.+
T Consensus         5 ~pK~~l~~L~e~~--~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~-g~G~SKK~Aeq~AA~~aL~~l~~   71 (73)
T d2b7ta1           5 LPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-E-GSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSHHHHHHHHHHC--SCCEEEEEEEECSSSSCEEEEEEESSSSEE-E-EEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHhcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-E-cCCCcHHHHHHHHHHHHHHHHhh
Confidence            4688888876543  45899988 789999999999999999988 5 48999999999999999999864

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.2e-12  Score=104.56  Aligned_cols=63  Identities=21%  Similarity=0.343  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHcCCCCCceEEe-eeCCCCCCcEEEEEEECCEEEecccccCCccHHHHHHHHHHHHHhhccC
Q 012154            3 KNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALSSLSHRG   72 (470)
Q Consensus         3 KS~LQElcQK~g~~lPeYel~-eeGP~H~prFtv~V~VnGe~~gsGG~GsSKKeAEq~AAk~AL~~L~~~~   72 (470)
                      ++.|+|+   .  ..|.|++. ++|++|++.|+++|.|+|..| . |.|+|||+||++||+.||+.|....
T Consensus        15 ~~~L~e~---~--~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~-g~G~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T d2dmya1          15 LMRLNQI---R--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-E-ASGPSKKTAKLHVAVKVLQAMGYPT   78 (84)
T ss_dssp             HHHHHHH---S--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHh---C--CCCeEEEEEeeCCCCCCeEEEEEEECCEEE-E-cCCCCHHHHHHHHHHHHHHHhCCCC
Confidence            4455554   2  45799987 889999999999999999987 4 5899999999999999999997543