Citrus Sinensis ID: 012208

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
Protein Sequence
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNLSTTPVAVRSKKDMTDMLK
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccHHHHEEcccccEEEEEccccccccccccccccccccccccccccccccccccccccHHccccccccHHHHHHccccccccccccHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccccccccccccHHHHHcccccccccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
cccEcHHcHHHHHHHccHHHHHEEEcccccEEEEEEccccccccccEcccccccccccccccHHHHHHHHHccccEEEEcccHHHHHHHHHHcccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHcHcHHHccccccccccccHHHHHHccccccccEEccccccHHHHcc
Coil and Loop (DISEMBL)
MYEFSSATRKTIASLNSSMAMTYYyatkptwkivttdctcsissccfnffsnvtnqhsktlhFTNLTHIIKNKCTWVIKAKGNDEAIAHVKekkndnaqttsESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFvmsaipflpfvfwarddvktrnaGIELGLWVSLGYFVEALGlltsdagrASFISLFTVIVVplfdgmlgaiipahTWFGVLISALGVGmlecsgsppsvgdFLNFLSAIFFGIHMLRTerisrstkkenflplLGYEICVVALLSTIWVLVggwfdssqdfdqspwtwtMLWDWmvtfpwvpalytGIFSTGICLWIEIAAMRDVSATETAIIYgleplwgagFAWFLLGERWSTAGWIGAALVLGGSLLVQMYrssspdkslkaeectktgslllipeldkeklqnnlsttpvavrskkdmtdmlk
Flexible Loop (DISEMBL)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHvkekkndnaqttsesvqiitkrpfwkRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSspdkslkaeecTKTGslllipeldkeklqnnlsttpvavrskkdmtdmlk
Low Complexity Region (SEG)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVttdctcsissccfnffsnvtnQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIgaalvlggsllvQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNLSTTPVAVRSKKDMTDMLK
Disordered region (IsUnstruct)
*****************SMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIA****************VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY********************LL*******************************
Disordered Region (DISOPRED)
***********IASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNV********************************************************************KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLV************************************************KDMT****
Disordered Region (DISEMBL)
*********KTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEK***********VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY***********EECTKTGSLLLIPELDKEKLQNNLSTTPVAVRS*********
Disordered Region (DISPRO)
*Y*FSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVT***SKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKN************ITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS****************SLLLIPELDKEKLQNNLSTTPVAVRSKKD****L*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNLSTTPVAVRSKKDMTDMLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	468	2.2.26 [Sep-21-2011]
O29470	308	Uncharacterized transport	yes	no	0.333	0.506	0.278	3e-07

>sp|O29470|Y788_ARCFU Uncharacterized transporter AF_0788 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0788 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-FWARDDVK 180
           K++ +   L ++ +++ S  P++K A + M P +F  VRF ++ + FLPF+  W   D  
Sbjct: 39  KRLYADLGLALVALIWGSTFPVVKIALDSMSPFAFNTVRFFIACLFFLPFLKGWDFKD-- 96

Query: 181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWF 239
               G ++G+   LGY  + +GL  + A  A FI+   V++ P+   ++   +       
Sbjct: 97  ----GFKIGIASFLGYTFQTVGLDYTTATNAGFITSTYVVLAPIISWLVYKDVFDKRDVS 152

Query: 240 GVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284
           GVL++ +G   L    S  ++GD L    A+FFG  +      SR
Sbjct: 153 GVLLAFVGFYFLS-GYSGFNIGDILMLFCALFFGAEIAMISHYSR 196

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	468
225456145	461	PREDICTED: uncharacterized protein LOC10	0.938	0.952	0.616	1e-152
225424254	460	PREDICTED: uncharacterized transporter A	0.75	0.763	0.705	1e-145
255570144	458	conserved hypothetical protein [Ricinus	0.756	0.772	0.690	1e-143
224111492	315	predicted protein [Populus trichocarpa]	0.670	0.996	0.682	1e-121
449520623	452	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.764	0.792	0.593	1e-120
449449134	464	PREDICTED: uncharacterized protein LOC10	0.764	0.771	0.579	1e-119
411113256	436	integral membrane protein [Triticum aest	0.786	0.844	0.565	1e-119
411113259	440	integral membrane protein [Triticum aest	0.786	0.836	0.565	1e-118
411113263	440	integral membrane protein [Triticum urar	0.786	0.836	0.56	1e-118
411113253	440	integral membrane protein [Triticum aest	0.786	0.836	0.56	1e-118

>gi|225456145|ref|XP_002278448.1| PREDICTED: uncharacterized protein LOC100247357 [Vitis vinifera] gi|297734319|emb|CBI15566.3| unnamed protein product [Vitis vinifera]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/462 (61%), Positives = 345/462 (74%), Gaps = 23/462 (4%)

Query: 26  ATKPTWKIVTTDCTCSISS--CCFNFFSNVTNQHSKTLHFTNLTHIIKN----------K 73
           AT P WK + T  +   S+  CCF FFS   +  +K   F   + ++ N          K
Sbjct: 3   ATYPRWKTIATTSSSDSSTLPCCF-FFSTSPSPRTKRGRFATFSSLLLNPHEYHLGPAKK 61

Query: 74  CTWVIKAKGNDEAIAHVKEKKNDNAQTTSE-----SVQIITK-RPFWKRVLFASKKIRSI 127
              V   + + + ++ + +K    A+  ++     S+Q   K RP W+RVLFASKK++SI
Sbjct: 62  KKSVEIGRPHQQTVSIIHDKCISKAKVKAKFDWKKSIQKGAKSRPLWRRVLFASKKMKSI 121

Query: 128 FLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIE 187
            LLNV+TIVYAS+I ++K  E IM PA+F AVRF +SAIPFLPFVF AR DV+TRNAG+E
Sbjct: 122 ILLNVVTIVYASNIAVVKEVETIMDPAAFSAVRFAVSAIPFLPFVFRARGDVQTRNAGLE 181

Query: 188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALG 247
           LGLW+SLGY  EALGLLTS+AGRASF S  TVIVVPL D MLGAI+PA TWFGVL+S LG
Sbjct: 182 LGLWISLGYLAEALGLLTSEAGRASFFSFITVIVVPLLDSMLGAIVPARTWFGVLMSVLG 241

Query: 248 VGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLST 307
           V MLECSGSPP+VGD LNFLSAIFFGIH+LRTE++SRSTKKENFLPLLGYE+CVVALLST
Sbjct: 242 VAMLECSGSPPNVGDLLNFLSAIFFGIHILRTEQLSRSTKKENFLPLLGYEVCVVALLST 301

Query: 308 IWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVS 367
            W ++GGWFD  QD DQ+ WTW +LWD MV FPW+PALYTG+FSTG+CLW+EI AMRDVS
Sbjct: 302 FWYVIGGWFDGIQDSDQASWTWAVLWDSMVAFPWIPALYTGVFSTGLCLWLEIGAMRDVS 361

Query: 368 ATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSSPDKSLKAE 427
           ATETAIIYGLEPLWGAGFAWFLLGERW T GWIGAAL+LGGSL VQM+ SSS  +S+  E
Sbjct: 362 ATETAIIYGLEPLWGAGFAWFLLGERWGTTGWIGAALLLGGSLTVQMFGSSSSSESIGVE 421

Query: 428 ECTKTGSLLLIPELDKEKLQNNLSTTPVA-VRSKKDMTDMLK 468
           +  K   +L+    +K+KLQ  LS +PV  + S+KD+ DMLK
Sbjct: 422 DGDKEVDILVS---EKQKLQTGLSASPVVIISSRKDVIDMLK 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424254|ref|XP_002280818.1| PREDICTED: uncharacterized transporter AF_0788 [Vitis vinifera] gi|297737689|emb|CBI26890.3| unnamed protein product [Vitis vinifera]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 252/357 (70%), Positives = 297/357 (83%), Gaps = 6/357 (1%)

Query: 110 KRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFL 169
           +R  W+R+LFAS+K+R I LLNV+T+VYAS+IP++K  E IM PA+F AVRFV+SAIPF+
Sbjct: 110 RRSLWRRILFASRKVRGIILLNVLTVVYASNIPVVKEVEAIMDPATFAAVRFVVSAIPFI 169

Query: 170 PFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML 229
           PFV  AR DV+TRNAGIELG WVSLGY +++LGLLTSDAGRASF+S+FTVIVVPL DGML
Sbjct: 170 PFVVRARGDVQTRNAGIELGFWVSLGYLMQSLGLLTSDAGRASFLSMFTVIVVPLLDGML 229

Query: 230 GAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKE 289
           GA +PAHTWFG L+S LGV MLE SGSPPSVGD LNFLSA+FFG+HMLRTE ISRST +E
Sbjct: 230 GATVPAHTWFGALMSILGVAMLESSGSPPSVGDLLNFLSAVFFGVHMLRTEHISRSTSRE 289

Query: 290 NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI 349
           NFLPLLGYE+C+VAL STIW  VGG F + Q+ D S   WTMLWDWMV FPW+PA YTGI
Sbjct: 290 NFLPLLGYEVCIVALFSTIWYFVGGSFGAIQECDLSSGMWTMLWDWMVAFPWIPAFYTGI 349

Query: 350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGS 409
            STG+CLWIE+ AMRDVSATETAIIYGLEP+WGAGFAWFLLGERWS+ GWIGAALVLGGS
Sbjct: 350 ISTGLCLWIEMDAMRDVSATETAIIYGLEPVWGAGFAWFLLGERWSSLGWIGAALVLGGS 409

Query: 410 LLVQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNLSTTPVAVRSKKDMTDM 466
           L VQ++ SSSP+KS + EE  +    LL+P  DKE   +  ST+PV  + +KD +D+
Sbjct: 410 LTVQIFGSSSPNKS-REEERNEKDDHLLVP--DKE---SGYSTSPVVAKFRKDASDI 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570144|ref|XP_002526034.1| conserved hypothetical protein [Ricinus communis] gi|223534681|gb|EEF36374.1| conserved hypothetical protein [Ricinus communis]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/359 (69%), Positives = 294/359 (81%), Gaps = 5/359 (1%)

Query: 110 KRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFL 169
           ++  WKR++FAS K+RSI LLNVIT+VYAS+IP++K  E IM PA+F  VRF +SAIPF+
Sbjct: 104 RKSLWKRIVFASTKVRSIILLNVITVVYASNIPVVKEVEAIMDPATFTVVRFAVSAIPFI 163

Query: 170 PFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML 229
           PFVF AR DVKTRNAGIELG WVSLGY  +ALGL+TSDAGRASFIS+FTVI+VPL DGML
Sbjct: 164 PFVFQARGDVKTRNAGIELGFWVSLGYLTQALGLMTSDAGRASFISMFTVILVPLLDGML 223

Query: 230 GAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKE 289
           GA++PA TWFG L+S +GV MLE SGSPP++GD LNFLSA+FFGIHMLRTE +SRST ++
Sbjct: 224 GAVVPARTWFGALMSIIGVAMLEFSGSPPNIGDLLNFLSAVFFGIHMLRTEHVSRSTNEK 283

Query: 290 NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI 349
           NFLPLLGYE+CVVA  ST+W  + G FD  Q  D S WTWTM+W W+VTFPW+PALYTG+
Sbjct: 284 NFLPLLGYEVCVVACFSTLWYFIEGGFDGIQACDPSSWTWTMVWHWIVTFPWIPALYTGV 343

Query: 350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGS 409
           FSTG+CLWIE+ AM DVSATETAIIYGLEP+WGA FAWFLLGERW TAGWIGA LVL GS
Sbjct: 344 FSTGLCLWIEMTAMCDVSATETAIIYGLEPVWGAAFAWFLLGERWGTAGWIGATLVLVGS 403

Query: 410 LLVQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNLSTTPVAVRSKKDMTDMLK 468
           L VQ++ SSSP  S++ E  ++    LL+P  DK   QN  ST+PV V  +KD+TDMLK
Sbjct: 404 LTVQIFGSSSPGGSVENEGKSEKVDRLLVP--DK---QNGFSTSPVPVSYRKDVTDMLK 457

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111492|ref|XP_002315877.1| predicted protein [Populus trichocarpa] gi|222864917|gb|EEF02048.1| predicted protein [Populus trichocarpa]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/318 (68%), Positives = 250/318 (78%), Gaps = 4/318 (1%)

Query: 151 MHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR 210
           M PA+F AVRFV+SAIPFLPF   + DD + RNAGIELG WVSLGY  +ALGLLTSDAGR
Sbjct: 1   MDPATFTAVRFVVSAIPFLPFALQSWDDARIRNAGIELGFWVSLGYLTQALGLLTSDAGR 60

Query: 211 ASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAI 270
           ASFIS+FTVIVVPL DGMLGAI+PAHTWFG L+S +GV MLE SGSPPS+GD LNFLSA+
Sbjct: 61  ASFISMFTVIVVPLLDGMLGAIVPAHTWFGALMSIVGVAMLESSGSPPSIGDLLNFLSAV 120

Query: 271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWT 330
           FFG+HMLRTE ISRST K+NFLP+LG+E+CV+A+ STIW  +G WF   Q  D S WTW 
Sbjct: 121 FFGVHMLRTEHISRSTDKKNFLPILGFEVCVIAISSTIWYFLGSWFGDVQTCDPSSWTWE 180

Query: 331 MLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLL 390
           M+W W+  FPW+PALYTGIFSTG+CLWIE+AAMRDVSATETAIIYGLEP+WGAGFAWFLL
Sbjct: 181 MVWHWLAVFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFLL 240

Query: 391 GERWSTAGWIGAALVLGGSLLVQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNL 450
           GERW   GWIGAALVLGGSL+VQ+   SS       +E         +  L     QN+ 
Sbjct: 241 GERWGATGWIGAALVLGGSLMVQICGLSSSSSVSGKDEVRSEK----VDHLLVSDKQNDF 296

Query: 451 STTPVAVRSKKDMTDMLK 468
           ST+PV V SKKD+  +LK
Sbjct: 297 STSPVRVISKKDVPKILK 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520623|ref|XP_004167333.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229323 [Cucumis sativus]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/364 (59%), Positives = 265/364 (72%), Gaps = 6/364 (1%)

Query: 105 VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMS 164
           V +  KR  W R+ FASKK+RSI LLNV+TIVYAS+IP +K  EE++ PA+F  VRF M+
Sbjct: 95  VSLFDKRSLWXRIFFASKKVRSIILLNVVTIVYASNIPFVKEVEELVDPATFNVVRFAMT 154

Query: 165 AIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPL 224
           AIPF+P V    DDV+ R+ GIELG WVSLGY ++A GL+TSDAGRASFIS+ TV+VVPL
Sbjct: 155 AIPFVPLVLDKWDDVEIRDTGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPL 214

Query: 225 FDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284
            DG+LGAI+PA TWFG L+S +GV ML  SGSPP VGD LNF+SAIFFG+HMLRTE ISR
Sbjct: 215 LDGLLGAIVPARTWFGALMSVVGVAMLASSGSPPCVGDLLNFMSAIFFGVHMLRTEHISR 274

Query: 285 STKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPA 344
              K+ FLPLL YE+CVV++LS +W  +  W + ++    S W W    DW+  FPWVPA
Sbjct: 275 RIDKDKFLPLLAYEVCVVSILSILWYFIWRWINGTETISGS-WNWKTYLDWVFMFPWVPA 333

Query: 345 LYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAAL 404
           LYTG+ STG CLW+E+AAM DVSATETAIIY LEP+WG  FAW LLGERW   GWIGAAL
Sbjct: 334 LYTGLLSTGFCLWLEMAAMCDVSATETAIIYSLEPVWGGSFAWILLGERWGLTGWIGAAL 393

Query: 405 VLGGSLLVQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNLSTTPVAVRSKKDMT 464
           VLGGSL VQ+  SSS  KS K E         L+   D    +++L+T+P+ +   K++ 
Sbjct: 394 VLGGSLTVQILASSS-TKSCKDETSKNKEVHGLLSSSD----EHSLTTSPIVITRVKNIA 448

Query: 465 DMLK 468
           D LK
Sbjct: 449 DHLK 452

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449134|ref|XP_004142320.1| PREDICTED: uncharacterized protein LOC101219169 [Cucumis sativus]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/376 (57%), Positives = 269/376 (71%), Gaps = 18/376 (4%)

Query: 105 VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMS 164
           V +  KR  W+R+ FASKK+RSI LLNV+TIVYAS IP++K  EE++ PA+F  VRF M+
Sbjct: 95  VSLFDKRSLWRRIFFASKKVRSIILLNVVTIVYASSIPVVKEVEELVDPATFNVVRFAMT 154

Query: 165 AIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPL 224
           AIPF+P V    DDV+ R+AGIELG WVSLGY ++A GL+TSDAGRASFIS+ TV+VVPL
Sbjct: 155 AIPFVPLVLDKWDDVEIRDAGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPL 214

Query: 225 FDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284
            DG+LGAI+PA TWFG L+S +GV MLE SGSPP VGD LNF+SAIFFG+HMLRTE ISR
Sbjct: 215 LDGLLGAIVPARTWFGALMSVVGVAMLESSGSPPCVGDLLNFMSAIFFGVHMLRTEHISR 274

Query: 285 STKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPA 344
              K+ FLPLL YE+CVV++LS +W  +  W + ++   +S W W    DW+  FPWVPA
Sbjct: 275 RIDKDKFLPLLAYEVCVVSILSILWYFIWRWINGTETISES-WNWKTYLDWVFMFPWVPA 333

Query: 345 LYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAAL 404
           LYTG+ STG CLW+E+AAM DVSATETAIIY LEP+WG  FAW LLGERW   GWIGAAL
Sbjct: 334 LYTGLLSTGFCLWLEMAAMCDVSATETAIIYSLEPVWGGSFAWILLGERWGLTGWIGAAL 393

Query: 405 VLG------------GSLLVQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNLST 452
           VLG            GSL VQ+  SSS  KS K E         L+   D    +++L+T
Sbjct: 394 VLGKLSSKIKKAVICGSLTVQILASSS-TKSCKDETSKNKEFHGLLSSSD----EHSLTT 448

Query: 453 TPVAVRSKKDMTDMLK 468
           +P+ +   K++ D LK
Sbjct: 449 SPIVITRVKNIADHLK 464

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113256|gb|AFW04247.1| integral membrane protein [Triticum aestivum]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/375 (56%), Positives = 272/375 (72%), Gaps = 7/375 (1%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           + +  +   ++ + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 63  REEGRKEEGDASKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 122

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPF+PFV  A  D +TRN G+ELGLWVSL Y  +A+GL+TS+AGRASF
Sbjct: 123 AVFNMVRFVIAAIPFIPFVIRAFGDRRTRNGGLELGLWVSLAYLAQAIGLITSEAGRASF 182

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP VGD LNFLSA+FFG
Sbjct: 183 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCVGDVLNFLSAVFFG 242

Query: 274 IHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW 333
           IHMLRTE+ISRST K+ F+ LL +E+ VVA  S +W L+   F    D     WT+  LW
Sbjct: 243 IHMLRTEQISRSTDKKKFMALLSFEVLVVAFTSILWFLLKDVFAEVHDSSFESWTFGALW 302

Query: 334 DWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGER 393
           D   +FPW+PALYTG+FSTG+C+W E+ AM  VSATETAI+YGLEP+WGA FAWFLLGER
Sbjct: 303 DSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWGAAFAWFLLGER 362

Query: 394 WSTAGWIGAALVLGGSLLVQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNLSTT 453
           W  A WIGAALVL GSL VQ++  S+P+KS K E C  +G+    P     K Q++LS +
Sbjct: 363 WDNAAWIGAALVLCGSLTVQLF-GSAPEKSQKVESC--SGNTFESP----LKRQDHLSLS 415

Query: 454 PVAVRSKKDMTDMLK 468
            + V S K++   L+
Sbjct: 416 AIPVDSSKNIGSQLE 430

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113259|gb|AFW04249.1| integral membrane protein [Triticum aestivum]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/375 (56%), Positives = 271/375 (72%), Gaps = 7/375 (1%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           + +  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  REEGGKEKGGVSKRVHGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPF+PFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFIPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP VGD LNFLSA+FFG
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSVIGVGLLECGGSPPCVGDVLNFLSAVFFG 246

Query: 274 IHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW 333
           IHMLRTE+ISRST K+ F+ LL +E+ VVAL S IW L+   F    D     WT+  LW
Sbjct: 247 IHMLRTEQISRSTDKKKFMALLSFEVLVVALTSIIWFLLKDAFVEVHDSSFESWTFGTLW 306

Query: 334 DWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGER 393
           D   +FPW+PALYTG+FSTG+C+W E+ AM  VSATETAI+YGLEP+WGA FAWFLLGER
Sbjct: 307 DSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWGATFAWFLLGER 366

Query: 394 WSTAGWIGAALVLGGSLLVQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNLSTT 453
           W  A WIGAALVL GSL VQ++  S+P+KS K E  +++G+    P     K Q  LS +
Sbjct: 367 WDNAAWIGAALVLCGSLTVQLF-GSAPEKSQKVE--SRSGNTFESP----LKRQERLSLS 419

Query: 454 PVAVRSKKDMTDMLK 468
            + V S+K++   L+
Sbjct: 420 AIPVDSRKNIGSQLE 434

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113263|gb|AFW04252.1| integral membrane protein [Triticum urartu]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/375 (56%), Positives = 273/375 (72%), Gaps = 7/375 (1%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           +++  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  RDEGGKEKGGVSKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPFLPFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP +GD LNFLSA+FFG
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCIGDLLNFLSAVFFG 246

Query: 274 IHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW 333
           IHMLRTE+ISRST K+ F+ LL +E+ VVA  S +W L+   F    D      T+  LW
Sbjct: 247 IHMLRTEQISRSTDKKKFMALLSFEVLVVAFTSIVWFLLKDVFTEVHDSSFESLTFGTLW 306

Query: 334 DWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGER 393
           D   +FPW+PALYTG+FSTG+C+W E+ AM  VSATETAI+YGLEP+WGA FAWFLLGER
Sbjct: 307 DSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWGAAFAWFLLGER 366

Query: 394 WSTAGWIGAALVLGGSLLVQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNLSTT 453
           W  A WIGAALVL GSL VQ++  S+P+KS K E  +++G+    P L++   QN LS +
Sbjct: 367 WDNAAWIGAALVLCGSLTVQLF-GSAPEKSQKVE--SRSGNTFESP-LER---QNRLSLS 419

Query: 454 PVAVRSKKDMTDMLK 468
            + V S+K++   L+
Sbjct: 420 AIPVDSRKNIGSQLE 434

Source: Triticum urartu

Species: Triticum urartu

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113253|gb|AFW04245.1| integral membrane protein [Triticum aestivum]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/375 (56%), Positives = 273/375 (72%), Gaps = 7/375 (1%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           +++  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  RDEGGKEKGGVSKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPFLPFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP +GD LNFLSA+FFG
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCIGDVLNFLSAVFFG 246

Query: 274 IHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW 333
           IHMLRTE+ISRST K+ F+ LL +E+ VVA  S +W L+   F    D      T+  LW
Sbjct: 247 IHMLRTEQISRSTDKKKFMALLSFEVLVVAFTSIVWFLLKDVFAEVHDSSFESLTFGTLW 306

Query: 334 DWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGER 393
           D   +FPW+PALYTG+FSTG+C+W E+ AM  VSATETAI+YGLEP+WGA FAWFLLGER
Sbjct: 307 DSAASFPWIPALYTGVFSTGLCMWAEMVAMAHVSATETAIVYGLEPVWGAAFAWFLLGER 366

Query: 394 WSTAGWIGAALVLGGSLLVQMYRSSSPDKSLKAEECTKTGSLLLIPELDKEKLQNNLSTT 453
           W  A WIGAALVL GSL VQ++  S+P+KS K E  +++G+    P L++   QN LS +
Sbjct: 367 WDNAAWIGAALVLCGSLTVQLF-GSAPEKSQKVE--SRSGNTFESP-LER---QNRLSLS 419

Query: 454 PVAVRSKKDMTDMLK 468
            + V S+K++   L+
Sbjct: 420 AIPVDSRKNIGSQLE 434

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	468
UNIPROTKB|Q48AQ1	322	CPS_0094 "Membrane protein" [C	0.579	0.841	0.255	1.2e-15
TIGR_CMR|CPS_0094	322	CPS_0094 "membrane protein" [C	0.579	0.841	0.255	1.2e-15
TIGR_CMR|BA_1622	303	BA_1622 "transporter, EamA fam	0.506	0.782	0.242	3e-12
UNIPROTKB|Q3AES3	298	CHY_0503 "Putative membrane pr	0.395	0.620	0.252	3.8e-12
TIGR_CMR|CHY_0503	298	CHY_0503 "putative membrane pr	0.395	0.620	0.252	3.8e-12
UNIPROTKB|Q4KHB5	301	PFL_1237 "Putative membrane pr	0.335	0.521	0.245	2.2e-11
UNIPROTKB|Q74FR1	308	GSU0545 "Membrane protein, put	0.397	0.603	0.231	3.9e-09
TIGR_CMR|GSU_0545	308	GSU_0545 "membrane protein, pu	0.397	0.603	0.231	3.9e-09
UNIPROTKB|Q83C01	305	CBU_1336 "Transporter, drug/me	0.536	0.822	0.233	1.8e-08
TIGR_CMR|CBU_1336	305	CBU_1336 "membrane protein, pu	0.536	0.822	0.233	1.8e-08

UNIPROTKB|Q48AQ1 CPS_0094 "Membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 216 (81.1 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 75/294 (25%), Positives = 134/294 (45%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S +I +I LL V  I     +PI   A E+M   +F A+RF ++ +  LP +++ +    
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPI-DLAIEVMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   177 ------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG 230
                   D V    +G+ LG ++ +G++ +  G+  +    A FI+   V +VP+   ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   231 A-IIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKK 288
               ++P   W GV+ +  G+ ML        + GD L  + A  F  H++ T+R   +   
Sbjct:   124 RNVVPKSVWIGVVTATAGLYMLTIGDKLVFNKGDILVLICAFGFAGHIIMTDRFVDNLP- 182

Query:   289 ENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDF-DQSPWTW-TMLWDWMVTFPWVPALY 346
                +PL   +I  V++ STI + +G   D    + D  P +W   L+  ++ F     L 
Sbjct:   183 --IIPLSIVQIFAVSIYSTIAIFIGP--DPVFYYQDAEPVSWYQQLFTPLMIFA---ILV 235

Query:   347 TGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWI 400
             +GI  T    W +  +   +   + A+I+  EP++    AW  L E     G I
Sbjct:   236 SGILGTAYAFWAQSVSQTLLKPHKVALIFAAEPVFACIAAWVFLDEVLGEKGMI 289

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0094 CPS_0094 "membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 216 (81.1 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 75/294 (25%), Positives = 134/294 (45%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S +I +I LL V  I     +PI   A E+M   +F A+RF ++ +  LP +++ +    
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPI-DLAIEVMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   177 ------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG 230
                   D V    +G+ LG ++ +G++ +  G+  +    A FI+   V +VP+   ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   231 A-IIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKK 288
               ++P   W GV+ +  G+ ML        + GD L  + A  F  H++ T+R   +   
Sbjct:   124 RNVVPKSVWIGVVTATAGLYMLTIGDKLVFNKGDILVLICAFGFAGHIIMTDRFVDNLP- 182

Query:   289 ENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDF-DQSPWTW-TMLWDWMVTFPWVPALY 346
                +PL   +I  V++ STI + +G   D    + D  P +W   L+  ++ F     L 
Sbjct:   183 --IIPLSIVQIFAVSIYSTIAIFIGP--DPVFYYQDAEPVSWYQQLFTPLMIFA---ILV 235

Query:   347 TGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWI 400
             +GI  T    W +  +   +   + A+I+  EP++    AW  L E     G I
Sbjct:   236 SGILGTAYAFWAQSVSQTLLKPHKVALIFAAEPVFACIAAWVFLDEVLGEKGMI 289

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|BA_1622 BA_1622 "transporter, EamA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 187 (70.9 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 63/260 (24%), Positives = 131/260 (50%)

Query:   133 ITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIP--FLPFVFW---ARDDVKTRN-AGI 186
             ++ ++ +   +++ A   + P +F  +RF+ + I   F+  +F    ++  +K  + AG+
Sbjct:    16 VSFIWGATFVVVQNAMSFVGPFTFNGIRFLFAGIILLFVQILFSKKASKQHIKQSSLAGL 75

Query:   187 ELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISA 245
              +G ++ +GY ++  GLL + + +A F++  ++++VP+   + L          G+ ++ 
Sbjct:    76 IVGFFLCIGYVLQTFGLLYTTSSKAGFLTGLSIVMVPILSFIFLKQKATIFIVIGIAVAT 135

Query:   246 LGVGMLECSGS-PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVAL 304
              G+ +L    S   ++GD L    A+ F  H+L     S   KK + L L   ++  V L
Sbjct:   136 AGLYLLTAGDSFQLNIGDILVLGCAVAFAAHILVNGFFS---KKISPLLLSTSQVLAVGL 192

Query:   305 LSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALY-TGIFSTGICLWIEIAAM 363
              S+I   +  + D  + F  + WT +       +F +  AL+ T +F+T I  +I+ +A 
Sbjct:   193 FSSICAFL--FEDWEKLFSVALWTNS-------SFLF--ALFLTSLFATSIAFFIQTSAQ 241

Query:   364 RDVSATETAIIYGLEPLWGA 383
             +  S T  AII+ +EP++ A
Sbjct:   242 KHTSPTRVAIIFAMEPVFAA 261

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

UNIPROTKB|Q3AES3 CHY_0503 "Putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 155 (59.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
 Identities = 50/198 (25%), Positives = 94/198 (47%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK 180
             +K++ +   L V+T  + +   I+K     + P SF + RF++S    LP +   ++   
Sbjct:     5 TKQLLADISLIVVTAFWGTTFVIIKNILANIEPFSFLSFRFLLSTFFLLPLLL-QKEGFS 63

Query:   181 TRNA--GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA--IIPAH 236
              +    G   G ++ LGY ++ +GL  + A  + FI+   V++VP+   +L    + P  
Sbjct:    64 PKGVFFGSIAGFFLWLGYILQTIGLKYTSAANSGFITGLAVVMVPVLSSILNKKPVTPG- 122

Query:   237 TWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
               FG  +S LG+ ++        + GD L    A+FF + ++  ER S +    +    L
Sbjct:   123 VIFGTGLSFLGLFIMSFDFKAGFNTGDLLTLAGALFFSMQIVSVERFSPNFSATSLT--L 180

Query:   296 GYEICVVALLS---TIWV 310
             G +I  V +LS    +W+
Sbjct:   181 G-QIATVGVLSLPAALWL 197

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0503 CHY_0503 "putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 155 (59.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
 Identities = 50/198 (25%), Positives = 94/198 (47%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK 180
             +K++ +   L V+T  + +   I+K     + P SF + RF++S    LP +   ++   
Sbjct:     5 TKQLLADISLIVVTAFWGTTFVIIKNILANIEPFSFLSFRFLLSTFFLLPLLL-QKEGFS 63

Query:   181 TRNA--GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA--IIPAH 236
              +    G   G ++ LGY ++ +GL  + A  + FI+   V++VP+   +L    + P  
Sbjct:    64 PKGVFFGSIAGFFLWLGYILQTIGLKYTSAANSGFITGLAVVMVPVLSSILNKKPVTPG- 122

Query:   237 TWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
               FG  +S LG+ ++        + GD L    A+FF + ++  ER S +    +    L
Sbjct:   123 VIFGTGLSFLGLFIMSFDFKAGFNTGDLLTLAGALFFSMQIVSVERFSPNFSATSLT--L 180

Query:   296 GYEICVVALLS---TIWV 310
             G +I  V +LS    +W+
Sbjct:   181 G-QIATVGVLSLPAALWL 197

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q4KHB5 PFL_1237 "Putative membrane protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 143 (55.4 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
 Identities = 41/167 (24%), Positives = 82/167 (49%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S+ +R+  L+ +  +++ S      +    + P  +  +RF + ++  LP V        
Sbjct:     3 SQALRADVLMLITAVIWGSAFVAQTSGMNHIGPFLYSGLRFALGSLCLLPLVLRKTPTDR 62

Query:   177 --DDVKTRN---AGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA 231
               + +  R     G+ +GL ++LG  ++ +GL+ +    A FI+   VIVVPL   ++G 
Sbjct:    63 QPEPLLNRGLLLGGVLMGLALALGINLQQVGLMFTTVTNAGFITGLYVIVVPLLGLLIGH 122

Query:   232 IIPAHTWFGVLISALGVGMLECSGS-PPSVGDFLNFLSAIFFGIHML 277
                  TW G +++ +G+ +L  S S   + GD+L  + A  +G H++
Sbjct:   123 KTGLGTWLGAVLAVVGMFLLSVSDSFHVASGDWLQLIGAFVWGGHVI 169

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74FR1 GSU0545 "Membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 107 (42.7 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
 Identities = 46/199 (23%), Positives = 85/199 (42%)

Query:   123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPF----LPFVFWARDD 178
             K+ +I L    T+++       K     + P  F   RF ++A+      LP +      
Sbjct:    13 KVTAILLFT--TLMWGGSFLFNKIGMREVPPVHFFFFRFALAALLMGGVCLPRLARLNRH 70

Query:   179 VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAI-IPAHT 237
             +  R A + L L      FV  LG+  +   RA +++   V+ +PL    L    +   T
Sbjct:    71 IAVRGAVVGLALAAVNLTFV--LGVSGTTISRAGYLNNLFVLFIPLLTFALWRERVDRVT 128

Query:   238 WFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLG 296
             + G+ ++ +G+  L   G+   + GD L+ + A+F  IH++   R+ R    E+   +  
Sbjct:   129 FGGIALAVVGLWALASGGAEGFNQGDLLSTVCALFIAIHIIAVSRVLRD---EDVYLVTF 185

Query:   297 YEICVVALLSTIWVLVGGW 315
              +   VA +  +  LV  W
Sbjct:   186 VQFVTVAAVGLVLCLVLPW 204

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0545 GSU_0545 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 107 (42.7 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
 Identities = 46/199 (23%), Positives = 85/199 (42%)

Query:   123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPF----LPFVFWARDD 178
             K+ +I L    T+++       K     + P  F   RF ++A+      LP +      
Sbjct:    13 KVTAILLFT--TLMWGGSFLFNKIGMREVPPVHFFFFRFALAALLMGGVCLPRLARLNRH 70

Query:   179 VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAI-IPAHT 237
             +  R A + L L      FV  LG+  +   RA +++   V+ +PL    L    +   T
Sbjct:    71 IAVRGAVVGLALAAVNLTFV--LGVSGTTISRAGYLNNLFVLFIPLLTFALWRERVDRVT 128

Query:   238 WFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLG 296
             + G+ ++ +G+  L   G+   + GD L+ + A+F  IH++   R+ R    E+   +  
Sbjct:   129 FGGIALAVVGLWALASGGAEGFNQGDLLSTVCALFIAIHIIAVSRVLRD---EDVYLVTF 185

Query:   297 YEICVVALLSTIWVLVGGW 315
              +   VA +  +  LV  W
Sbjct:   186 VQFVTVAAVGLVLCLVLPW 204

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83C01 CBU_1336 "Transporter, drug/metabolite exporter family" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 64/274 (23%), Positives = 124/274 (45%)

Query:   124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRN 183
             +R+   L  IT+++    P++K A   + P+ F  +R  ++++  LP +F  R   KT  
Sbjct:     5 VRAHLALFFITLLWGLTFPLIKDALGSISPSLFVVLRTSVASLILLPVIFLQRK--KTTF 62

Query:   184 AGIE----LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWF 239
               I+    LG + S  Y  +++GL +  +  ++FI+  +V+VVP    +     P   WF
Sbjct:    63 TMIKWTLVLGFFQSATYVFQSIGLESISSADSAFITALSVVVVPFLALIFLKSKPR--WF 120

Query:   240 GVLISALGVG-MLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYE 298
               + + L +G +   +G+     +  N     F+ +       +   T +  F   L  E
Sbjct:   121 DFVTALLCLGGIFILTGA-----NIFNMKGGDFWTLGCAVAYALYIVTLQA-FSKKLKPE 174

Query:   299 ICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI 358
               ++AL  +  +L    F     F +   T   ++ W V    +  L+  IF+TG+  ++
Sbjct:   175 DTILAL--SYQILFSLIFPLLTAFYK---TTASIFSWPVI---IAVLFCAIFATGLVFYL 226

Query:   359 EIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGE 392
             ++   R +  +   +IY  EP++ A F + L GE
Sbjct:   227 QLRYQRYIPVSRAVLIYAFEPIFAALFGYLLNGE 260

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1336 CBU_1336 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 64/274 (23%), Positives = 124/274 (45%)

Query:   124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRN 183
             +R+   L  IT+++    P++K A   + P+ F  +R  ++++  LP +F  R   KT  
Sbjct:     5 VRAHLALFFITLLWGLTFPLIKDALGSISPSLFVVLRTSVASLILLPVIFLQRK--KTTF 62

Query:   184 AGIE----LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWF 239
               I+    LG + S  Y  +++GL +  +  ++FI+  +V+VVP    +     P   WF
Sbjct:    63 TMIKWTLVLGFFQSATYVFQSIGLESISSADSAFITALSVVVVPFLALIFLKSKPR--WF 120

Query:   240 GVLISALGVG-MLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYE 298
               + + L +G +   +G+     +  N     F+ +       +   T +  F   L  E
Sbjct:   121 DFVTALLCLGGIFILTGA-----NIFNMKGGDFWTLGCAVAYALYIVTLQA-FSKKLKPE 174

Query:   299 ICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI 358
               ++AL  +  +L    F     F +   T   ++ W V    +  L+  IF+TG+  ++
Sbjct:   175 DTILAL--SYQILFSLIFPLLTAFYK---TTASIFSWPVI---IAVLFCAIFATGLVFYL 226

Query:   359 EIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGE 392
             ++   R +  +   +IY  EP++ A F + L GE
Sbjct:   227 QLRYQRYIPVSRAVLIYAFEPIFAALFGYLLNGE 260

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017821001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (461 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	468
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	3e-16
pfam00892	126	pfam00892, EamA, EamA-like transporter family	7e-09
TIGR00950	260	TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran	3e-08
pfam13536	112	pfam13536, EmrE, Multidrug resistance efflux trans	4e-05
pfam00892	126	pfam00892, EamA, EamA-like transporter family	0.003
COG5006	292	COG5006, rhtA, Threonine/homoserine efflux transpo	0.003

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 78.8 bits (194), Expect = 3e-16
 Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 32/299 (10%)

Query: 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGI 186
           + LL    +   S I +  A E +       A+RF+++A+  LP +      ++      
Sbjct: 10  LALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPW 69

Query: 187 ELGLWVSLGYFVE-----ALGLLTSDAGRASFISLFTVIVVPLFDGML--GAIIPAHTWF 239
            L L ++L           L L  + A  AS I     +   L   +L  G  +      
Sbjct: 70  LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQIL 129

Query: 240 GVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
           G+L++  GV ++   G        +G  L   +A+ + ++    +R+SR          L
Sbjct: 130 GILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLSRLG-----PVTL 184

Query: 296 GYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC 355
              + ++  L  + +     F +       P              W+  LY G+FSTG+ 
Sbjct: 185 ALLLQLLLALLLLLLFFLSGFGA-------PILSRA---------WLLLLYLGVFSTGLA 228

Query: 356 LWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM 414
             +   A+R + A+  A++  LEP++ A     LLGE  S A  +GAALV+ G LL  +
Sbjct: 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 53.8 bits (130), Expect = 7e-09
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWI 400
            +  LY G+F T +   +   A++ VSA+  ++I  L P++    +  LLGE+ +    +
Sbjct: 53  ILALLYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLL 112

Query: 401 GAALVLGGSLLV 412
           G  L+L G LL+
Sbjct: 113 GIVLILLGVLLI 124

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 51/290 (17%), Positives = 88/290 (30%), Gaps = 39/290 (13%)

Query: 128 FLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIE 187
               VI       +P             F   R ++ A+  L      R     R   + 
Sbjct: 3   TTGVVIGQYLEGQVP-----------LYFAVFRRLIFALLLL-LPLLRRRPPLKRLLRLL 50

Query: 188 LGLWVSLGYFVEALGLLTSDAGRASFISLFT----VIVVPLFDGMLGAIIPAHTWFGVLI 243
           L   + +G F   L  +          +L      + V  L D M             ++
Sbjct: 51  LLGALQIGVFY-VLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVL 109

Query: 244 SALGVGMLECSGSPP--SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICV 301
              G  +L   G+      G  L   S I F +  +  +R+ +    E            
Sbjct: 110 GLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPE------------ 157

Query: 302 VALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVT-FPWVPALYTGIFSTGICLWIEI 360
           +   +   +L+G            P+ W +  +       W   LY G+  T +  ++  
Sbjct: 158 LLQFTGWVLLLGALL-------LLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWN 210

Query: 361 AAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSL 410
             +  V  +  +I+   EPL        +LGE  S    IG AL++   L
Sbjct: 211 KGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 260

>gnl|CDD|222207 pfam13536, EmrE, Multidrug resistance efflux transporter

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 17/118 (14%)

Query: 303 ALLSTIWVLV-GGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIA 361
           ALL  + VL+ G   D  +     PW W +L            L   +F   +C    +A
Sbjct: 9   ALLLLLIVLIRGRLGDVFRALKTKPWLWLILA----------GLIGFLFYALLC----LA 54

Query: 362 AMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS 419
                       I  L P++ A     L  +R      + +A++L G +L+Q+  ++ 
Sbjct: 55  L--QYGPGWVVAITALTPVFAALLGRLLFKQRLPKRELLASAIILAGVVLMQVTEATG 110

This is a membrane protein family acting as a multidrug resistance efflux transporter. Length = 112

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIEL------ 188
           + +A      K   E + P +F A RF+++ I  +  +F  R      +    L      
Sbjct: 1   LSWALYFVFSKKLLERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLG 60

Query: 189 GLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALG 247
               +LGY +    L    A  AS I+  + +   +   + LG  +      G+++  LG
Sbjct: 61  LFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLG 120

Query: 248 VGML 251
           V ++
Sbjct: 121 VLLI 124

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|227339 COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 330 TMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFL 389
             L+   +      AL   + S+ +   +E+ A+R + A     +  LEP   A      
Sbjct: 201 PALFSPSLL---PLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF 257

Query: 390 LGERWSTAGWIGAALVLGGS 409
           LGE  +   W+  A V+  S
Sbjct: 258 LGETLTLIQWLAIAAVIAAS 277

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	468
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11689	295	aromatic amino acid exporter; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.98
PRK15430	296	putative chloramphenical resistance permease RarD;	99.97
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.97
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.96
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.95
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.95
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.95
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.94
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.94
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.92
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.9
COG2962	293	RarD Predicted permeases [General function predict	99.87
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.86
KOG2765	416	consensus Predicted membrane protein [Function unk	99.8
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.75
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.65
KOG2766	336	consensus Predicted membrane protein [Function unk	99.55
COG2510	140	Predicted membrane protein [Function unknown]	99.55
KOG1580	337	consensus UDP-galactose transporter related protei	99.47
COG2510	140	Predicted membrane protein [Function unknown]	99.42
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.42
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.38
KOG1581	327	consensus UDP-galactose transporter related protei	99.37
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.33
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.33
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.31
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.3
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.25
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.08
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.08
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.06
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.04
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.03
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.02
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.01
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.95
PRK13499	345	rhamnose-proton symporter; Provisional	98.93
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.9
PRK15430	296	putative chloramphenical resistance permease RarD;	98.87
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.78
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.78
PLN00411	358	nodulin MtN21 family protein; Provisional	98.78
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.72
PRK11689	295	aromatic amino acid exporter; Provisional	98.64
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.57
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.52
PRK11272	292	putative DMT superfamily transporter inner membran	98.51
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.51
KOG1582	367	consensus UDP-galactose transporter related protei	98.48
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.4
COG2962	293	RarD Predicted permeases [General function predict	98.38
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.38
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.36
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.32
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.29
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.25
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.22
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.14
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.13
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.13
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	98.12
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.87
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.78
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.73
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.72
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.65
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.62
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.59
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.58
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.58
COG2076	106	EmrE Membrane transporters of cations and cationic	97.55
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.54
PRK11431	105	multidrug efflux system protein; Provisional	97.49
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.43
COG2076	106	EmrE Membrane transporters of cations and cationic	97.42
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.4
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.37
PRK11431	105	multidrug efflux system protein; Provisional	97.36
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.28
PRK13499	345	rhamnose-proton symporter; Provisional	97.16
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.06
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	97.0
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.86
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.85
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.72
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.45
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.37
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.3
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.22
KOG1581	327	consensus UDP-galactose transporter related protei	95.68
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.48
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.78
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	94.52
KOG4831	125	consensus Unnamed protein [Function unknown]	94.17
KOG1580	337	consensus UDP-galactose transporter related protei	94.08
KOG2922	335	consensus Uncharacterized conserved protein [Funct	93.83
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	93.56
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	93.11
KOG2765	416	consensus Predicted membrane protein [Function unk	92.26
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	90.59
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	90.35
PRK02237	109	hypothetical protein; Provisional	88.49
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	84.11
KOG3912	372	consensus Predicted integral membrane protein [Gen	83.28
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	81.9

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=4.6e-31  Score=265.83  Aligned_cols=281  Identities=15%  Similarity=0.133  Sum_probs=219.2

Q ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHHhcc--ccc--ch---hhHHHHHHHHHH
Q 012208          123 KIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARD--DVK--TR---NAGIELGLWVSL  194 (468)
Q Consensus       123 ~~~g~ll~lla~~~wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~--~~~--~~---~~~l~~gl~~~~  194 (468)
                      +.+.++.+++..+..+...++.|.+.+ +++|+.+.++|+.++.++++++.+++++  +++  .+   ....+.|++++.
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~   90 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM   90 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence            456788899999999999999998655 6999999999999999999888765432  111  12   234455666655


Q ss_pred             HHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-H------hcCccchhHHHHHHHHHHhhhhhccCCC-----------
Q 012208          195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-M------LGAIIPAHTWFGVLISALGVGMLECSGS-----------  256 (468)
Q Consensus       195 ~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~------l~er~~~~~~~gi~l~l~Gv~li~~~~~-----------  256 (468)
                      .+.+++.|++|++++.++++.++.|+++.++++ +      +|||+++.+++|++++++|+.++...++           
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~  170 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY  170 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence            566899999999999999999999999999999 5      4999999999999999999998764211           


Q ss_pred             --------------C-CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 012208          257 --------------P-PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQD  321 (468)
Q Consensus       257 --------------~-~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~  321 (468)
                                    . ...|++++++++++|++|.++.|+..++++  +....++++..++++...+..+..+.. ....
T Consensus       171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~l~~~~~-~~~~  247 (358)
T PLN00411        171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP--AAFTVSFLYTVCVSIVTSMIGLVVEKN-NPSV  247 (358)
T ss_pred             ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--cHhHHHHHHHHHHHHHHHHHHHHHccC-Cccc
Confidence                          0 134999999999999999999999988763  334556677776666655554443211 0100


Q ss_pred             CCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHH
Q 012208          322 FDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIG  401 (468)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG  401 (468)
                      . ...+      +   . .+..+++.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|
T Consensus       248 ~-~~~~------~---~-~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG  315 (358)
T PLN00411        248 W-IIHF------D---I-TLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIG  315 (358)
T ss_pred             c-eecc------c---h-HHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            0 0000      0   1 13346677765 56899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCC
Q 012208          402 AALVLGGSLLVQMYRSS  418 (468)
Q Consensus       402 ~~lIi~Gv~l~~~~~~~  418 (468)
                      +++|++|+++..+.+++
T Consensus       316 ~~LIl~Gv~l~~~~~~~  332 (358)
T PLN00411        316 GILITLGFYAVMWGKAN  332 (358)
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999998865443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=100.00  E-value=2.2e-30  Score=256.15  Aligned_cols=270  Identities=18%  Similarity=0.157  Sum_probs=207.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHh
Q 012208          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLL  204 (468)
Q Consensus       125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~  204 (468)
                      ++.+++++++++||++++..|...++++|+.+.++|+.++.++++++..+++.++..++..+..++..+....+++.+++
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~   83 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLG   83 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999888766422222222222333334434455566677775


Q ss_pred             ----cCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC------------CCcHHHHHHHH
Q 012208          205 ----TSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS------------PPSVGDFLNFL  267 (468)
Q Consensus       205 ----~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~------------~~~~G~llall  267 (468)
                          +++++.++++.++.|+++.++++ ++|||+++++++|+++++.|++++..++.            ....|++++++
T Consensus        84 ~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~  163 (295)
T PRK11689         84 YANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFI  163 (295)
T ss_pred             HhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHH
Confidence                46788899999999999999999 78999999999999999999999876532            12459999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHH
Q 012208          268 SAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYT  347 (468)
Q Consensus       268 aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~l  347 (468)
                      ++++||+|.++.||..++.   ++.....   ..+++...+.....+   .. ...   +.         ...|..+++.
T Consensus       164 aa~~~A~~~v~~k~~~~~~---~~~~~~~---~~~~~~l~~~~~~~~---~~-~~~---~~---------~~~~~~l~~~  221 (295)
T PRK11689        164 GAFIWAAYCNVTRKYARGK---NGITLFF---ILTALALWIKYFLSP---QP-AMV---FS---------LPAIIKLLLA  221 (295)
T ss_pred             HHHHHHHHHHHHhhccCCC---CchhHHH---HHHHHHHHHHHHHhc---Cc-ccc---CC---------HHHHHHHHHH
Confidence            9999999999999987664   4444321   222233222222211   11 011   11         1236677777


Q ss_pred             HHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208          348 GIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS  417 (468)
Q Consensus       348 gv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~  417 (468)
                      + ++++++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++....++
T Consensus       222 ~-~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        222 A-AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             H-HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            7 46899999999999999999999999999999999999999999999999999999999988876443

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=4.5e-30  Score=253.60  Aligned_cols=273  Identities=16%  Similarity=0.226  Sum_probs=223.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccc---cchhhHHHHHHHH-HHHHHHHHH
Q 012208          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDV---KTRNAGIELGLWV-SLGYFVEAL  201 (468)
Q Consensus       126 g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~---~~~~~~l~~gl~~-~~~~~~~~~  201 (468)
                      -++.+++..++||+++++.|...++++|.+++++|+.++.++++++...++++.   +.+.+....|.++ ..++.++++
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   88 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTV   88 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678888999999999999888999999999999999999888776654332   2233344556654 456788888


Q ss_pred             HH-hcCchhhHHHHhhhhHHHHHHHHHHhcCccchhHHHHHHHHHHhhhhhccCC--CCCcHHHHHHHHHHHHHHHHHHH
Q 012208          202 GL-LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG--SPPSVGDFLNFLSAIFFGIHMLR  278 (468)
Q Consensus       202 Al-~~~~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~l~Gv~li~~~~--~~~~~G~llallaa~~~a~~~v~  278 (468)
                      +. ++++++.++++.++.|+++.+++.++|||+++++++|+++++.|+.++..++  +....|++++++++++||.|.+.
T Consensus        89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~  168 (292)
T PRK11272         89 AEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW  168 (292)
T ss_pred             HHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            98 9999999999999999999999987799999999999999999999986543  23357999999999999999999


Q ss_pred             HHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 012208          279 TERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI  358 (468)
Q Consensus       279 ~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l  358 (468)
                      .|+..++    ++.....+++.+++++..+.....+...  . ...            +...|..+++++++++++++.+
T Consensus       169 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~------------~~~~~~~i~~l~i~~s~~~~~l  229 (292)
T PRK11272        169 SSRLPLP----VGMMAGAAEMLAAGVVLLIASLLSGERL--T-ALP------------TLSGFLALGYLAVFGSIIAISA  229 (292)
T ss_pred             HHhcCCC----cchHHHHHHHHHHHHHHHHHHHHcCCcc--c-ccC------------CHHHHHHHHHHHHHHHHHHHHH
Confidence            9997643    3345567777777777666544332110  0 000            1224888999999999999999


Q ss_pred             HHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208          359 EIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS  417 (468)
Q Consensus       359 ~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~  417 (468)
                      |++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.++
T Consensus       230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999876543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.98  E-value=1.1e-29  Score=251.66  Aligned_cols=278  Identities=17%  Similarity=0.178  Sum_probs=213.7

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH-HHHHHHHHHHhc
Q 012208          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVS-LGYFVEALGLLT  205 (468)
Q Consensus       127 ~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~-~~~~~~~~Al~~  205 (468)
                      .++.++++++||+++++.|...++++|..+.++|+.++.+.++++..+++   ..++..+..|++.. ..+.+++.++++
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~   82 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPK---VPLNLLLGYGLTISFGQFAFLFCAINF   82 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45688899999999999999888999999999999998777665543222   22333444455443 344577789888


Q ss_pred             -CchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC---C-CcHHHHHHHHHHHHHHHHHHHH
Q 012208          206 -SDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS---P-PSVGDFLNFLSAIFFGIHMLRT  279 (468)
Q Consensus       206 -~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~---~-~~~G~llallaa~~~a~~~v~~  279 (468)
                       .|++.++++.++.|+++.++++ ++|||+++++++|++++++|+.++..++.   . ...|++++++++++|++|.++.
T Consensus        83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~  162 (299)
T PRK11453         83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFN  162 (299)
T ss_pred             cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence             6899999999999999999999 78999999999999999999999885431   1 2369999999999999999999


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 012208          280 ERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE  359 (468)
Q Consensus       280 r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~  359 (468)
                      |+..++.+.........+.+.++.+.........+...... .....+         +...|..++++++++++++|.+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~l~~l~i~~t~~~~~l~  232 (299)
T PRK11453        163 KKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVTI---------DMTTILSLMYLAFVATIVGYGIW  232 (299)
T ss_pred             HHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhccC---------CHHHHHHHHHHHHHHHHHHHHHH
Confidence            99876543223344445555544433332222222111000 000011         12358889999999999999999


Q ss_pred             HHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208          360 IAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS  417 (468)
Q Consensus       360 ~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~  417 (468)
                      ++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|++|+++..+.++
T Consensus       233 ~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        233 GTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            9999999999999999999999999999999999999999999999999988776543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.97  E-value=1.7e-29  Score=249.84  Aligned_cols=274  Identities=13%  Similarity=0.079  Sum_probs=203.9

Q ss_pred             cccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccc------ccchhh---HHHHHHH
Q 012208          121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD------VKTRNA---GIELGLW  191 (468)
Q Consensus       121 ~~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~------~~~~~~---~l~~gl~  191 (468)
                      +++.+|.+++++++++||.++++.|.. ++++|.++.++|+.++.++++++...+++.      .+.++.   .+..++.
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL   82 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence            355689999999999999999999986 569999999999999988777665443211      111222   2233455


Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCCCcHHHHHHHHHHH
Q 012208          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAI  270 (468)
Q Consensus       192 ~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~~~~G~llallaa~  270 (468)
                      .+.++.++++|++++|+++++++.++.|+++.++++ ++|||+++++++|++++++|++++..+.++.   .++++++++
T Consensus        83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~---~~~~l~aa~  159 (296)
T PRK15430         83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL---PIIALGLAF  159 (296)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHHH
Confidence            667899999999999999999999999999999999 7899999999999999999999987543322   257889999


Q ss_pred             HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHH
Q 012208          271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIF  350 (468)
Q Consensus       271 ~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~  350 (468)
                      +|+.|.+..|+..++.. .+......+.+.++.+...    ..... ........+            ..+...++.+.+
T Consensus       160 ~~a~~~i~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~------------~~~~~~~~~~g~  221 (296)
T PRK15430        160 SFAFYGLVRKKIAVEAQ-TGMLIETMWLLPVAAIYLF----AIADS-STSHMGQNP------------MSLNLLLIAAGI  221 (296)
T ss_pred             HHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHHHH----HHccC-CcccccCCc------------HHHHHHHHHHHH
Confidence            99999999888754211 1222222333333322211    11110 000000001            012233444444


Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          351 STGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       351 ~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                      .+.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|++|+.+.....
T Consensus       222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999998888876544

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.97  E-value=6.2e-29  Score=245.53  Aligned_cols=270  Identities=16%  Similarity=0.161  Sum_probs=217.6

Q ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHH
Q 012208          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD--DVKTRNAGIELGLWVSLGYFVEA  200 (468)
Q Consensus       123 ~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~--~~~~~~~~l~~gl~~~~~~~~~~  200 (468)
                      +.+++.++++++++|+.++.+.|++.++++|..+.++|++++.++++++...++.  +++.++..+..|++.+..+.+++
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   89 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFY   89 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999988999999999999999888877654332  23444556677888888889999


Q ss_pred             HHHhcCchhhHHHHhhhhHHHHHHHHHHhcCccchhHHHHHHHHHHhhhhhccCC----CCCcHHHHHHHHHHHHHHHHH
Q 012208          201 LGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHM  276 (468)
Q Consensus       201 ~Al~~~~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~l~Gv~li~~~~----~~~~~G~llallaa~~~a~~~  276 (468)
                      +|++++|++.++++.++.|+++.+++   +||+.  +..++.+++.|+.++..++    +....|++++++++++|++|.
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~---~~~~~--~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~  164 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS---SRRPV--DFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYI  164 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh---cCChH--HHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998876   35554  4456778899999876432    123569999999999999999


Q ss_pred             HHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHH
Q 012208          277 LRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICL  356 (468)
Q Consensus       277 v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~  356 (468)
                      +..|+..++.   ++... .+...+++++..++......    . ..   +.         ...|...+++|+++++++|
T Consensus       165 v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~----~-~~---~~---------~~~~~~~l~lgv~~t~~~~  223 (293)
T PRK10532        165 LSGQRAGAEH---GPATV-AIGSLIAALIFVPIGALQAG----E-AL---WH---------WSILPLGLAVAILSTALPY  223 (293)
T ss_pred             HHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHHccC----c-cc---CC---------HHHHHHHHHHHHHHHHHHH
Confidence            9999997663   45554 45556666665554433221    0 00   11         1135567899999999999


Q ss_pred             HHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208          357 WIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS  418 (468)
Q Consensus       357 ~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~  418 (468)
                      .+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|++|+++..++.++
T Consensus       224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999998876543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.96  E-value=8.6e-28  Score=233.04  Aligned_cols=254  Identities=19%  Similarity=0.246  Sum_probs=209.6

Q ss_pred             HhhhHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHH-HHHHHHHHHHHHhcCchhhHHHH
Q 012208          137 YASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLLTSDAGRASFI  214 (468)
Q Consensus       137 wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~-~~~~~~~~~~Al~~~~~~~a~ii  214 (468)
                      ||.+++..|...+ ..++..+.+.|+..+.+++.++..++ ++++.+.+.+..|.+ ..+++.++++|++++++++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii   79 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL   79 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence            8999999999765 58899999999999888887766554 333344445555554 56788999999999999999999


Q ss_pred             hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 012208          215 SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG--SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENF  291 (468)
Q Consensus       215 ~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~--~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~  291 (468)
                      .++.|+++.+++. ++|||+++++++|+++++.|++++..++  +....|++++++++++|+++.++.|+..++.++ ++
T Consensus        80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~-~~  158 (260)
T TIGR00950        80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP-EL  158 (260)
T ss_pred             HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc-hH
Confidence            9999999999999 7899999999999999999999987654  344689999999999999999999998876421 23


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHH
Q 012208          292 LPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATET  371 (468)
Q Consensus       292 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~  371 (468)
                      .....+++.++.++..+.........   ..  .            ...|..++++++++++++|.+|++++++.++.++
T Consensus       159 ~~~~~~~~~~~~~~l~~~~~~~~~~~---~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  221 (260)
T TIGR00950       159 LQFTGWVLLLGALLLLPFAWFLGPNP---QA--L------------SLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA  221 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCC---Cc--c------------hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            44555667777777776655432111   11  1            1137778899999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHH
Q 012208          372 AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGS  409 (468)
Q Consensus       372 s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv  409 (468)
                      +.+.+++|+++++++++++||++++.+++|+++++.|+
T Consensus       222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999985

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.95  E-value=2.6e-26  Score=227.90  Aligned_cols=276  Identities=11%  Similarity=0.049  Sum_probs=208.9

Q ss_pred             hhhHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHH--hcc---cccchhhHHHHHHHHHHHHHHHHHHHhcCchhhH
Q 012208          138 ASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFW--ARD---DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRA  211 (468)
Q Consensus       138 g~~~~~~k~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~--~~~---~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a  211 (468)
                      -...+..|++.++ ..|..++++|+.++.+.+.+....  +++   +++.++..++.|++++....+.++++++++++.+
T Consensus        15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~   94 (302)
T TIGR00817        15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFT   94 (302)
T ss_pred             HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            3444678988887 669999999999988777665321  111   2334566778899988889999999999999999


Q ss_pred             HHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012208          212 SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSP-PSVGDFLNFLSAIFFGIHMLRTERISRSTKKE  289 (468)
Q Consensus       212 ~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~-~~~G~llallaa~~~a~~~v~~r~~~~~~~~~  289 (468)
                      +++.++.|++++++++ ++|||+++++++|++++++|+++....+.+ ...|++++++++++|++|.++.||..++ ++.
T Consensus        95 ~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~  173 (302)
T TIGR00817        95 HTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTI-KSL  173 (302)
T ss_pred             HHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCC
Confidence            9999999999999999 789999999999999999999887644433 3469999999999999999999998762 135


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChh
Q 012208          290 NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSAT  369 (468)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~  369 (468)
                      |+..+..|++..+.+..+|+....+...... .+...+.    ..+.....+...+..+..+....+.+++.++++.+|+
T Consensus       174 ~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~  248 (302)
T TIGR00817       174 DKTNLYAYISIMSLFLLSPPAFITEGPPFLP-HGFMQAI----SGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPL  248 (302)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHcchHHHH-HHHHHhh----cccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence            8889999999999988888876543211100 0000000    0000000122222333323333345667899999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCC
Q 012208          370 ETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS  419 (468)
Q Consensus       370 ~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~  419 (468)
                      ++++..+++|+++++++++++||++++.+++|++++++|++++.+.++++
T Consensus       249 t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~  298 (302)
T TIGR00817       249 THSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK  298 (302)
T ss_pred             HHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999998765443

specificities overlap.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.95  E-value=4.6e-29  Score=229.90  Aligned_cols=275  Identities=16%  Similarity=0.157  Sum_probs=222.0

Q ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhc----ccccchhhHHHHHHHHHHHHH
Q 012208          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR----DDVKTRNAGIELGLWVSLGYF  197 (468)
Q Consensus       122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~----~~~~~~~~~l~~gl~~~~~~~  197 (468)
                      ++..|+++..++.++-..+.+..|.+.  .+|.+..-.|+++-+++..+....++    ++...|++++++|+.++.+..
T Consensus        35 ~p~~gl~l~~vs~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   35 KPNLGLLLLTVSYFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM  112 (346)
T ss_pred             CCccCceehhhHHHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence            566788888888555555555555544  68999998887766666555444433    345668888999999999999


Q ss_pred             HHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC---------------CCcHH
Q 012208          198 VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS---------------PPSVG  261 (468)
Q Consensus       198 ~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~---------------~~~~G  261 (468)
                      +.|||++|++.++|++|++++|+++.++++ ++||+.++.+.++.++.+.||++|..+..               .+..|
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g  192 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG  192 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence            999999999999999999999999999999 89999999999999999999999987631               23678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhH
Q 012208          262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW  341 (468)
Q Consensus       262 ~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (468)
                      .+.++.++++.|.-+++.|++.++.   |....+.|..+++.+..+......+ ....++...               .|
T Consensus       193 t~aai~s~lf~asvyIilR~iGk~~---h~~msvsyf~~i~lV~s~I~~~~ig-~~~lP~cgk---------------dr  253 (346)
T KOG4510|consen  193 TVAAISSVLFGASVYIILRYIGKNA---HAIMSVSYFSLITLVVSLIGCASIG-AVQLPHCGK---------------DR  253 (346)
T ss_pred             hHHHHHhHhhhhhHHHHHHHhhccc---cEEEEehHHHHHHHHHHHHHHhhcc-ceecCcccc---------------ce
Confidence            9999999999999999999998885   4455556666676666665544443 223333222               36


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208          342 VPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS  418 (468)
Q Consensus       342 ~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~  418 (468)
                      +.++.+|+++ ++++.+.++++|+..|+.++++.+++.++|.+++.++|||.|++++|.|+++|+.+.+.+...+..
T Consensus       254 ~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa  329 (346)
T KOG4510|consen  254 WLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWA  329 (346)
T ss_pred             EEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHh
Confidence            6677888875 678888899999999999999999999999999999999999999999999999999888776543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.95  E-value=1.3e-24  Score=219.49  Aligned_cols=282  Identities=11%  Similarity=0.093  Sum_probs=217.0

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHhc---ccc----cchhhHHHHHHHHHHH
Q 012208          124 IRSIFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWAR---DDV----KTRNAGIELGLWVSLG  195 (468)
Q Consensus       124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~---~~~----~~~~~~l~~gl~~~~~  195 (468)
                      .+..++.+....+-.......|.+.+.++ |+.++.+|++++.+++.+++..+.   ++.    ..++..+..|+++...
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~  127 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFV  127 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            34455555555555666777899888999 999999999999887665543321   111    1344567889988877


Q ss_pred             HHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCCC-cHHHHHHHHHHHHHH
Q 012208          196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFG  273 (468)
Q Consensus       196 ~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~~-~~G~llallaa~~~a  273 (468)
                      +.+.+.|+++++++.++++..+.|++++++++ ++|||++++++++++++++|+.+.+..+.+. ..|++++++++++++
T Consensus       128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a  207 (350)
T PTZ00343        128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSS  207 (350)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHH
Confidence            77788999999999999999999999999999 7999999999999999999999988655433 569999999999999


Q ss_pred             HHHHHHHHHhhccC----CCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-C-CCCchhhhhccccchhhHHHHHHH
Q 012208          274 IHMLRTERISRSTK----KENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDF-D-QSPWTWTMLWDWMVTFPWVPALYT  347 (468)
Q Consensus       274 ~~~v~~r~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ll~l  347 (468)
                      ++.++.|+..++.+    +.++..+..+....+.++.+|+....+........ . ...+.         ...+..+++ 
T Consensus       208 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~l~-  277 (350)
T PTZ00343        208 LRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMT---------NYTKGIIIF-  277 (350)
T ss_pred             HHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc---------ccchHHHHH-
Confidence            99999999887643    24556566666888888888877654321100000 0 00000         001223344 


Q ss_pred             HHHHHHHHHHHHHH----HhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208          348 GIFSTGICLWIEIA----AMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY  415 (468)
Q Consensus       348 gv~~~~~~~~l~~~----al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~  415 (468)
                      .++.+++.+.+|+.    ++++++|...++..+++|+++++++++++||++++.+++|++++++|+++++..
T Consensus       278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            35556888888884    999999999999999999999999999999999999999999999999998764

>TIGR00688 rarD rarD protein

Probab=99.94  E-value=1.7e-24  Score=209.71  Aligned_cols=241  Identities=14%  Similarity=0.143  Sum_probs=179.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcc------ccc--chh----hHHHHHHHH
Q 012208          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD------DVK--TRN----AGIELGLWV  192 (468)
Q Consensus       125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~------~~~--~~~----~~l~~gl~~  192 (468)
                      +|++++++++++||+++++.|.. ++++|.++.++|++++.++++++...+++      +.+  .++    .....|++.
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   80 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI   80 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            47889999999999999999984 46999999999999999887766533221      111  111    234557777


Q ss_pred             HHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCCCcHHHHHHHHHHHH
Q 012208          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIF  271 (468)
Q Consensus       193 ~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~~~~G~llallaa~~  271 (468)
                      +.++.++++|++++++++++++.++.|+++.++++ ++|||+++++++++++++.|++++..++++.   .+++++++++
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~---~~~~l~aa~~  157 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSL---PWEALVLAFS  157 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHH
Confidence            88899999999999999999999999999999999 8999999999999999999999886543322   1468999999


Q ss_pred             HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHH
Q 012208          272 FGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFS  351 (468)
Q Consensus       272 ~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~  351 (468)
                      |++|.+..|+..++    +....... .....+...+....... ........             ...|..+++.|++ 
T Consensus       158 ~a~~~i~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~l~~~g~~-  217 (256)
T TIGR00688       158 FTAYGLIRKALKNT----DLAGFCLE-TLSLMPVAIYYLLQTDF-ATVQQTNP-------------FPIWLLLVLAGLI-  217 (256)
T ss_pred             HHHHHHHHhhcCCC----CcchHHHH-HHHHHHHHHHHHHHhcc-CcccccCc-------------hhHHHHHHHHHHH-
Confidence            99999999987653    22222111 11111122211111111 11000000             0137777777876 


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHH
Q 012208          352 TGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFL  389 (468)
Q Consensus       352 ~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~l  389 (468)
                      +.++|.+|++++++.++++++++.|++|+++.+++.++
T Consensus       218 t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       218 TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999875

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.94  E-value=2.3e-24  Score=211.73  Aligned_cols=267  Identities=14%  Similarity=0.143  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHh--ccccc-----chhhHHHHHHHHHHHHHHH
Q 012208          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--RDDVK-----TRNAGIELGLWVSLGYFVE  199 (468)
Q Consensus       127 ~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~--~~~~~-----~~~~~l~~gl~~~~~~~~~  199 (468)
                      +++.++++++|+...+..|...+..++.  .+++...+.++++++..++  +..++     .+...+..++....++.++
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL   80 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999655544443  4666667777777666543  11111     1222334455677888999


Q ss_pred             HHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC--CCcHHHHHHHHHHHHHHHHH
Q 012208          200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHM  276 (468)
Q Consensus       200 ~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~--~~~~G~llallaa~~~a~~~  276 (468)
                      ++|+++++++.++++.++.|+++.++++ ++|||+++++++|+++++.|++++..++.  ....|+.++++++++|++|.
T Consensus        81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~  160 (281)
T TIGR03340        81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS  160 (281)
T ss_pred             HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999 79999999999999999999999875432  33468889999999999999


Q ss_pred             HHHHHHhhccCCC-CchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHH
Q 012208          277 LRTERISRSTKKE-NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC  355 (468)
Q Consensus       277 v~~r~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~  355 (468)
                      +..|+..++.++. +......+.+...+   .++........... ....            ...+..+++.++++++++
T Consensus       161 i~~k~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~~~~s~l~  224 (281)
T TIGR03340       161 LSDKAAALGVPAFYSALGYLGIGFLAMG---WPFLLLYLKRHGRS-MFPY------------ARQILPSATLGGLMIGGA  224 (281)
T ss_pred             hhccccccchhcccccHHHHHHHHHHHH---HHHHHHHHHHhccc-hhhh------------HHHHHHHHHHHHHHHHHH
Confidence            9988865443211 11112222222221   22222111000000 0000            012556778888999999


Q ss_pred             HHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHH
Q 012208          356 LWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLL  411 (468)
Q Consensus       356 ~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l  411 (468)
                      |.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|++|+++
T Consensus       225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            99999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.92  E-value=2.4e-22  Score=198.75  Aligned_cols=281  Identities=16%  Similarity=0.173  Sum_probs=219.3

Q ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHhh-cCC-HHHHHHHHHHHHHHHHHHHHHHhccc-------ccchhhHHHHHHHH
Q 012208          122 KKIRSIFLLNVITIVYASDIPILKAAEE-IMH-PASFCAVRFVMSAIPFLPFVFWARDD-------VKTRNAGIELGLWV  192 (468)
Q Consensus       122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~-~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~-------~~~~~~~l~~gl~~  192 (468)
                      +..+.+++.=+.+++-..+...+..+.+ +++ |....++-+++-.++..++...|++.       ++.+++.++++++.
T Consensus        10 ~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D   89 (334)
T PF06027_consen   10 RFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD   89 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH
Confidence            3345666666677777777888876544 344 77888888877777666665555432       23455677889999


Q ss_pred             HHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC----------CCCcHH
Q 012208          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG----------SPPSVG  261 (468)
Q Consensus       193 ~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~----------~~~~~G  261 (468)
                      ..++++.+.|++|++.+.++++..+..++++++++ ++|+|+++.+++|++++++|++++...+          ++...|
T Consensus        90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~G  169 (334)
T PF06027_consen   90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILG  169 (334)
T ss_pred             HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchh
Confidence            99999999999999999999999999999999999 8999999999999999999999876442          234799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhH
Q 012208          262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW  341 (468)
Q Consensus       262 ~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (468)
                      ++++++++++||+++++.++..++.   +.....++..+++.++..+...+.+. .+..   ...|.+.         .+
T Consensus       170 Dll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile~-~~i~---~~~w~~~---------~~  233 (334)
T PF06027_consen  170 DLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILER-SGIE---SIHWTSQ---------VI  233 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHheeh-hhhh---ccCCChh---------hH
Confidence            9999999999999999999998874   56677777777777777665544332 1222   1222211         12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCC
Q 012208          342 VPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS  419 (468)
Q Consensus       342 ~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~  419 (468)
                      . .+....++..+-|.+....++..+|+..++-..+..+++++++++++|+++++..++|.++|++|++++...+.+.
T Consensus       234 ~-~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~  310 (334)
T PF06027_consen  234 G-LLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE  310 (334)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence            2 2233344566778888899999999999999999999999999999999999999999999999999988766544

Some of the sequences in this family are annotated as putative membrane proteins.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.92  E-value=1e-21  Score=192.54  Aligned_cols=271  Identities=25%  Similarity=0.316  Sum_probs=211.8

Q ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHHhc--ccccch---hhHHHHHHHHHHHH
Q 012208          123 KIRSIFLLNVITIVYASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTR---NAGIELGLWVSLGY  196 (468)
Q Consensus       123 ~~~g~ll~lla~~~wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~--~~~~~~---~~~l~~gl~~~~~~  196 (468)
                      ...+..+.++..+.|+.+....|...++ .++....+.|...+.+...+...+++  ..+...   +..+..++....+.
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence            3467778888889999999999998776 77777778899988887544444332  111221   22334445567788


Q ss_pred             HHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-H-hcCccchhHHHHHHHHHHhhhhhccCCCCC----cHHHHHHHHHHH
Q 012208          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-M-LGAIIPAHTWFGVLISALGVGMLECSGSPP----SVGDFLNFLSAI  270 (468)
Q Consensus       197 ~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~-l~er~~~~~~~gi~l~l~Gv~li~~~~~~~----~~G~llallaa~  270 (468)
                      .+++.++++++++.++++.++.|+++.+++. + +|||+++.+++++++++.|++++..++...    ..|+++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~  164 (292)
T COG0697          85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL  164 (292)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999996 5 599999999999999999999999876543    479999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCchhHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHH
Q 012208          271 FFGIHMLRTERISRSTKKENFLPLLG-YEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI  349 (468)
Q Consensus       271 ~~a~~~v~~r~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv  349 (468)
                      +++++.+..|+.. +   .++..... +.+........+.  ......  ....              ...|..+.+.|+
T Consensus       165 ~~a~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~--------------~~~~~~~~~~g~  222 (292)
T COG0697         165 LWALYTALVKRLS-R---LGPVTLALLLQLLLALLLLLLF--FLSGFG--APIL--------------SRAWLLLLYLGV  222 (292)
T ss_pred             HHHHHHHHHHHhc-C---CChHHHHHHHHHHHHHHHHHHH--Hhcccc--ccCC--------------HHHHHHHHHHHH
Confidence            9999999999887 3   24455544 3333111111111  111111  0010              124788889999


Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208          350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY  415 (468)
Q Consensus       350 ~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~  415 (468)
                      +++++++.+|++++++.++..++.+.+++|+++++++++++||+++..+++|+++++.|+.+....
T Consensus       223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         223 FSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            999899999999999999999999999999999999999999999999999999999999988865

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.90  E-value=2.1e-21  Score=178.57  Aligned_cols=268  Identities=19%  Similarity=0.166  Sum_probs=221.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHHHHH
Q 012208          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD--DVKTRNAGIELGLWVSLGYFVEALGL  203 (468)
Q Consensus       126 g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~--~~~~~~~~l~~gl~~~~~~~~~~~Al  203 (468)
                      .++.++.++..--....+.|.+...+++..++.+|..++.++++++++..++  .++.+...+..|...+..+++||.++
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si   92 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI   92 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777777777778889999999999999999999999999988876543  45677788889999999999999999


Q ss_pred             hcCchhhHHHHhhhhHHHHHHHHHHhcCccchhHHHHHHHHHHhhhhhccCC----CCCcHHHHHHHHHHHHHHHHHHHH
Q 012208          204 LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHMLRT  279 (468)
Q Consensus       204 ~~~~~~~a~ii~~~~Pl~~~ll~~~l~er~~~~~~~gi~l~l~Gv~li~~~~----~~~~~G~llallaa~~~a~~~v~~  279 (468)
                      +.+|.+.+..|.++-|+.+.+++     ..+.++.+.+.+++.|+.++.-.+    ..+..|..+++.++.||++|.+..
T Consensus        93 ~riPlGiAVAiEF~GPL~vA~~~-----sRr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G  167 (292)
T COG5006          93 ERIPLGIAVAIEFTGPLAVALLS-----SRRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLG  167 (292)
T ss_pred             HhccchhhhhhhhccHHHHHHHh-----ccchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence            99999999999999999888773     234566777788889988876443    456799999999999999999999


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 012208          280 ERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE  359 (468)
Q Consensus       280 r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~  359 (468)
                      +|..+..   +...-+...+.++.++.+|+........-.                 ++......+.++++++++.|.+-
T Consensus       168 ~r~g~~~---~g~~g~a~gm~vAaviv~Pig~~~ag~~l~-----------------~p~ll~laLgvavlSSalPYsLE  227 (292)
T COG5006         168 QRAGRAE---HGTAGVAVGMLVAALIVLPIGAAQAGPALF-----------------SPSLLPLALGVAVLSSALPYSLE  227 (292)
T ss_pred             chhcccC---CCchHHHHHHHHHHHHHhhhhhhhcchhhc-----------------ChHHHHHHHHHHHHhcccchHHH
Confidence            9998643   445666677888888887775543221111                 12235667888999999999999


Q ss_pred             HHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208          360 IAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS  418 (468)
Q Consensus       360 ~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~  418 (468)
                      ..++++.++...++++.++|.++.+.|++++||.+|+.||+|+++|+.+..-..+..+|
T Consensus       228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~  286 (292)
T COG5006         228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK  286 (292)
T ss_pred             HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence            99999999999999999999999999999999999999999999999998876665444

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.87  E-value=1.7e-19  Score=170.52  Aligned_cols=272  Identities=17%  Similarity=0.178  Sum_probs=215.8

Q ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccc---------ccchhhHHHHHHHHH
Q 012208          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD---------VKTRNAGIELGLWVS  193 (468)
Q Consensus       123 ~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---------~~~~~~~l~~gl~~~  193 (468)
                      ..+|+++.+.+.++||......|.+. +.++.++...|.....++++.+....|+.         ++......+.+++.+
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~   83 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLLE-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG   83 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            35799999999999999999999875 49999999999999988887766554322         222223345577788


Q ss_pred             HHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCCCcHHHHHHHHHHHHH
Q 012208          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFF  272 (468)
Q Consensus       194 ~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~~~~G~llallaa~~~  272 (468)
                      ..+..|.+|.....+-+++.-.+..|++.++++. |+|||+++.|+++++++.+||.......+..   -+.++.=+++|
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~l---pwval~la~sf  160 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSL---PWVALALALSF  160 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCC---cHHHHHHHHHH
Confidence            8899999999999999999999999999999999 8999999999999999999999866443222   24556668899


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHH
Q 012208          273 GIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFST  352 (468)
Q Consensus       273 a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~  352 (468)
                      +.|...-|+..     +|+.+-....++...+.++...+..+.....  .....           ...|.+++..|. .+
T Consensus       161 ~~Ygl~RK~~~-----v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~--~~~~~-----------~~~~~LLv~aG~-vT  221 (293)
T COG2962         161 GLYGLLRKKLK-----VDALTGLTLETLLLLPVALIYLLFLADSGQF--LQQNA-----------NSLWLLLVLAGL-VT  221 (293)
T ss_pred             HHHHHHHHhcC-----CchHHhHHHHHHHHhHHHHHHHHHHhcCchh--hhcCC-----------chHHHHHHHhhH-HH
Confidence            99998655442     4667777777777777777666665543320  11011           012445554455 57


Q ss_pred             HHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208          353 GICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS  417 (468)
Q Consensus       353 ~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~  417 (468)
                      +++..+|..|-++.+-+..+.+.|.+|..-.+++.+++||+++..+++..++|..|.+++....-
T Consensus       222 avpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l  286 (293)
T COG2962         222 AVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL  286 (293)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999886543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.86  E-value=1.3e-19  Score=178.60  Aligned_cols=260  Identities=13%  Similarity=0.111  Sum_probs=199.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccc----hhhHHHHHHHHHHHHHHHHH
Q 012208          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKT----RNAGIELGLWVSLGYFVEAL  201 (468)
Q Consensus       126 g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~----~~~~l~~gl~~~~~~~~~~~  201 (468)
                      ++++.++++++||++.+..|... +.++.++.  |..++.+++..+....+.++..    ....+..|+.+..++++++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~   78 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK   78 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence            57889999999999999999876 67787775  7877777766554443322222    22344556667888899999


Q ss_pred             HHhcCchhhHHHHhh-hhHHHHHHHHH-HhcCccchhH----HHHHHHHHHhhhhhccCCC---------CCcHHHHHHH
Q 012208          202 GLLTSDAGRASFISL-FTVIVVPLFDG-MLGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNF  266 (468)
Q Consensus       202 Al~~~~~~~a~ii~~-~~Pl~~~ll~~-~l~er~~~~~----~~gi~l~l~Gv~li~~~~~---------~~~~G~llal  266 (468)
                      |+++++++.+..+.. +.+++..+++. ++||+.++++    .+|+++++.|++++...+.         ....|.++++
T Consensus        79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l  158 (290)
T TIGR00776        79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLL  158 (290)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHH
Confidence            999999999999987 88888888888 7999999999    9999999999999865321         1258999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHH---HHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHH
Q 012208          267 LSAIFFGIHMLRTERISRSTKKENFLPLLGYEIC---VVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVP  343 (468)
Q Consensus       267 laa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (468)
                      +++++|+.|.+..|+..     .++....+.+..   +++++..+.   ..  .. .     ++.         .+.++.
T Consensus       159 ~sg~~y~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~---~~--~~-~-----~~~---------~~~~~~  213 (290)
T TIGR00776       159 MSTIGYLVYVVVAKAFG-----VDGLSVLLPQAIGMVIGGIIFNLG---HI--LA-K-----PLK---------KYAILL  213 (290)
T ss_pred             HHHHHHHHHHHHHHHcC-----CCcceehhHHHHHHHHHHHHHHHH---Hh--cc-c-----chH---------HHHHHH
Confidence            99999999999999762     356666444333   333322221   10  00 0     000         111333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-cCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhH----HHHHHHHHHHHHHHh
Q 012208          344 ALYTGIFSTGICLWIEIAAMR-DVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGW----IGAALVLGGSLLVQM  414 (468)
Q Consensus       344 ll~lgv~~~~~~~~l~~~al~-~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~----iG~~lIi~Gv~l~~~  414 (468)
                      .+..|++ ..+++.+|..+.+ +.+++.++.+.+.+|+.+.+++++++||..++.++    +|+++|+.|+.+...
T Consensus       214 ~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       214 NILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            3347777 7999999999999 99999999999999999999999999999999999    999999999988754

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.80  E-value=2.6e-18  Score=166.43  Aligned_cols=221  Identities=14%  Similarity=0.167  Sum_probs=184.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC--------
Q 012208          186 IELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--------  256 (468)
Q Consensus       186 l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~--------  256 (468)
                      +..+.+++++++.++.|+.+++++..+++.+++-+|+..++. +..||+++.++++++++++||+++...++        
T Consensus       163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a  242 (416)
T KOG2765|consen  163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPA  242 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCc
Confidence            445667889999999999999999999999999999999999 56899999999999999999999986632        


Q ss_pred             -CCcHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhcc
Q 012208          257 -PPSVGDFLNFLSAIFFGIHMLRTERISRST-KKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWD  334 (468)
Q Consensus       257 -~~~~G~llallaa~~~a~~~v~~r~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  334 (468)
                       ....|.++++++|+.||+|.++.||-..+. +++|.-.+..+..++..+++.|..++.... ..+..+...        
T Consensus       243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e~F~lP~--------  313 (416)
T KOG2765|consen  243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEERFELPS--------  313 (416)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccCcccCCC--------
Confidence             336899999999999999999999988776 466766666666666667777666665444 222222111        


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208          335 WMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM  414 (468)
Q Consensus       335 ~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~  414 (468)
                         ..+...++..++++++++-.+|.+|+-..++..+++.+.+++..+++.+.++-|..+++.+++|.+.|++|.+++++
T Consensus       314 ---~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  314 ---STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             ---CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence               11245577888999999999999999999999999999999999999999998999999999999999999999987


Q ss_pred             ccCC
Q 012208          415 YRSS  418 (468)
Q Consensus       415 ~~~~  418 (468)
                      ..+.
T Consensus       391 ~~~~  394 (416)
T KOG2765|consen  391 SSEN  394 (416)
T ss_pred             cccc
Confidence            6643

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.75  E-value=1.2e-15  Score=151.47  Aligned_cols=255  Identities=17%  Similarity=0.192  Sum_probs=203.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhc---ccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-
Q 012208          152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-  227 (468)
Q Consensus       152 ~p~~~~~~R~~~a~l~ll~~~~~~~---~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-  227 (468)
                      .|..+++.++....+...+.....+   .++...+.++..+++..++..+.+.|++|+|...-.++....|+.+++++. 
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l  110 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL  110 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence            3889999999888877776665544   234456677888999999999999999999999999999999999999998 


Q ss_pred             HhcCccchhHHHHHHHHHHhhhhhccCCC-----C------CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH
Q 012208          228 MLGAIIPAHTWFGVLISALGVGMLECSGS-----P------PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLG  296 (468)
Q Consensus       228 ~l~er~~~~~~~gi~l~l~Gv~li~~~~~-----~------~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~  296 (468)
                      ++|+|+++.+++++++..+|+++....+.     .      ...|+++.+++.++.+...++.++..++++ .++...++
T Consensus       111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~-~~~~~~mf  189 (303)
T PF08449_consen  111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYG-KSPWELMF  189 (303)
T ss_pred             hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHH
Confidence            79999999999999999999999875431     1      123999999999999999999999998765 57788999


Q ss_pred             HHHHHHHHHHHHHHHHh--hcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHH
Q 012208          297 YEICVVALLSTIWVLVG--GWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAII  374 (468)
Q Consensus       297 ~~~~~~~l~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~  374 (468)
                      +...++.+...+.....  +...+....-           ..++..+..++...+ ++.+++...+...++.++...+++
T Consensus       190 y~n~~~~~~~~~~~~~l~~~~~~~~~~f~-----------~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v  257 (303)
T PF08449_consen  190 YTNLFSLPFLLILLFLLPTGEFRSAIRFI-----------SAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIV  257 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhHHHHHH-----------HHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhH
Confidence            99999888877766662  2111100000           001122444444444 456666666788999999999999


Q ss_pred             hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCC
Q 012208          375 YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS  419 (468)
Q Consensus       375 ~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~  419 (468)
                      ..+.-+++++++++++|+++++.+|+|.++++.|+.+..+.++|+
T Consensus       258 ~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  258 TTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            999999999999999999999999999999999999998876553

; GO: 0055085 transmembrane transport

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.65  E-value=8.7e-16  Score=150.39  Aligned_cols=270  Identities=14%  Similarity=0.147  Sum_probs=211.0

Q ss_pred             hhHHHHHHHhh--cCC-HHHHHHHHHHHHHHHHHHHHHHhcc------cccchhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 012208          139 SDIPILKAAEE--IMH-PASFCAVRFVMSAIPFLPFVFWARD------DVKTRNAGIELGLWVSLGYFVEALGLLTSDAG  209 (468)
Q Consensus       139 ~~~~~~k~~~~--~~~-p~~~~~~R~~~a~l~ll~~~~~~~~------~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~  209 (468)
                      ......|...+  +++ |..++.++...+.+.++.....+-.      ++..+...+.+|++..++..+.+.|+.+.|++
T Consensus        31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~Vs  110 (316)
T KOG1441|consen   31 GVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVS  110 (316)
T ss_pred             eeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchh
Confidence            33445577766  544 8888888777777776665554422      12356677888999999999999999999999


Q ss_pred             hHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHhh-cc
Q 012208          210 RASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS-PPSVGDFLNFLSAIFFGIHMLRTERISR-ST  286 (468)
Q Consensus       210 ~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~-~~~~G~llallaa~~~a~~~v~~r~~~~-~~  286 (468)
                      ..+++..++|++++++++ +.+|+.+...++.++....||.+.+..+. -+..|.+.++++.+..+...++.++..+ +.
T Consensus       111 F~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~  190 (316)
T KOG1441|consen  111 FYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKG  190 (316)
T ss_pred             HHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            999999999999999999 78999999999999999999999988765 5579999999999999999999999985 23


Q ss_pred             CCCCchhHHHHHHHHHHHHHH-HHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012208          287 KKENFLPLLGYEICVVALLST-IWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRD  365 (468)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~  365 (468)
                      .+.|++.+..++.-.+.+.++ |+....+.... .......|...          ....++..++. ..-...-+..+.+
T Consensus       191 ~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~sv~~-f~~Nls~f~~ig~  258 (316)
T KOG1441|consen  191 ESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVT----------FLILLLNSVLA-FLLNLSAFLVIGR  258 (316)
T ss_pred             cccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchh----------hHHHHHHHHHH-HHHHHHHHHHHcc
Confidence            467999999998888888887 66555443222 11111111111          22223333443 3334455689999


Q ss_pred             CChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCCC
Q 012208          366 VSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSSP  420 (468)
Q Consensus       366 ~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~~  420 (468)
                      ++|...++...+.-++.++.++++|+++.++.+..|+++.++|++++.+.+.+++
T Consensus       259 tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~  313 (316)
T KOG1441|consen  259 TSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK  313 (316)
T ss_pred             cCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999999999999999999999998776543

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.55  E-value=1e-15  Score=141.02  Aligned_cols=268  Identities=17%  Similarity=0.214  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHH-HHhhcC-CHHHHHHHHHHHHHHHHHHHHHHhccccc-chhhHHHHHHHHHHHHHHHH
Q 012208          124 IRSIFLLNVITIVYASDIPILK-AAEEIM-HPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLWVSLGYFVEA  200 (468)
Q Consensus       124 ~~g~ll~lla~~~wg~~~~~~k-~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~l~~gl~~~~~~~~~~  200 (468)
                      +.++.+.=+..++-......+. ++..++ .|....|+.+++-+++..+++.+|++..+ .+++++++++.-.-++++..
T Consensus        17 li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV   96 (336)
T KOG2766|consen   17 LIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVV   96 (336)
T ss_pred             hheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEe
Confidence            3343333333333333333333 343433 48889999999999999988888775433 34457777888888899999


Q ss_pred             HHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC---------CCCCcHHHHHHHHHHH
Q 012208          201 LGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS---------GSPPSVGDFLNFLSAI  270 (468)
Q Consensus       201 ~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~---------~~~~~~G~llallaa~  270 (468)
                      .|.||++...+..+.......+.+++| |+|.|..+.++.|+++|++||++++..         +++...|+++.+++|-
T Consensus        97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GAT  176 (336)
T KOG2766|consen   97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGAT  176 (336)
T ss_pred             eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecce
Confidence            999999999999998777778888898 899999999999999999999998643         3456799999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHH-H
Q 012208          271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTG-I  349 (468)
Q Consensus       271 ~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg-v  349 (468)
                      +||+.++....+.++.   |...++....+++++++..-..+ +    ..+.....|.            |....++. .
T Consensus       177 lYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i~-~----~~~~~tl~w~------------~~i~~yl~f~  236 (336)
T KOG2766|consen  177 LYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFIF-E----RHHVSTLHWD------------SAIFLYLRFA  236 (336)
T ss_pred             eeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHhh-h----ccceeeEeeh------------HHHHHHHHHH
Confidence            9999999999999885   66777777777777776544222 1    1222222222            22233333 3


Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 012208          350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQ  413 (468)
Q Consensus       350 ~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~  413 (468)
                      ++.++-|.+....++..+++..++-..+.-.+++++  ..||-+.+|...+..+.+..|.+++.
T Consensus       237 L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs  298 (336)
T KOG2766|consen  237 LTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS  298 (336)
T ss_pred             HHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee
Confidence            445666777778899999999999999999999998  67888899999999999999988774

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.55  E-value=6.3e-14  Score=116.35  Aligned_cols=129  Identities=18%  Similarity=0.203  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcc-------cccchhhHHHHHHHHHHHHH
Q 012208          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD-------DVKTRNAGIELGLWVSLGYF  197 (468)
Q Consensus       125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~-------~~~~~~~~l~~gl~~~~~~~  197 (468)
                      ...++.+++++++|...++.|...++++|...+++|..+..++++.+....++       .++.+...++.|+..++++.
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999888887776542       34556666777999999999


Q ss_pred             HHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208          198 VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (468)
Q Consensus       198 ~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~  253 (468)
                      +||+|++...++.++.+..++|+++.++++ |+|||++..+++|++++..|+++++.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999 89999999999999999999998763

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.47  E-value=1.1e-12  Score=119.83  Aligned_cols=254  Identities=13%  Similarity=0.088  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc---ccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-H
Q 012208          153 PASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-M  228 (468)
Q Consensus       153 p~~~~~~R~~~a~l~ll~~~~~~~---~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~  228 (468)
                      ...++|++...-.++.=+++..++   .+...-+.+...++...+++...+.|++++|--...+-.+.-|+=+++++. +
T Consensus        53 alaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~  132 (337)
T KOG1580|consen   53 ALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF  132 (337)
T ss_pred             HHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh
Confidence            444555555555554433332222   222233344555666777888899999999988888889999999999999 7


Q ss_pred             hcCccchhHHHHHHHHHHhhhhhccCC--------CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHH
Q 012208          229 LGAIIPAHTWFGVLISALGVGMLECSG--------SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEIC  300 (468)
Q Consensus       229 l~er~~~~~~~gi~l~l~Gv~li~~~~--------~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~  300 (468)
                      .|.+.++++...++++++||.+....+        .+...|.++.+++-..-++....+.|+...+.. ....++++..+
T Consensus       133 ~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~Nl  211 (337)
T KOG1580|consen  133 AHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNL  211 (337)
T ss_pred             hcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHH
Confidence            899999999999999999999987542        255799999999999999999999988876643 55777888888


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHH
Q 012208          301 VVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPL  380 (468)
Q Consensus       301 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv  380 (468)
                      .+.+.+...+++.+...+.......           .+..|+-+..+++. +++++++.+.-+...+|...+++..+.-.
T Consensus       212 wStL~Lg~g~lfTGElweF~yF~~R-----------hP~~~~~l~l~ai~-s~LGQ~fIF~tv~~FgPLtCSivTTTRKf  279 (337)
T KOG1580|consen  212 WSTLYLGAGLLFTGELWEFFYFVQR-----------HPYVFWDLTLLAIA-SCLGQWFIFKTVEEFGPLTCSIVTTTRKF  279 (337)
T ss_pred             HHHHHhhhhheehhhHHHHHHHHHh-----------ccHHHHHHHHHHHH-HHhhhHHHHHHHHHhCCeeEEEEeehHHH
Confidence            8888877666665433222111100           01235555555654 68889898999999999999999999999


Q ss_pred             HHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCC
Q 012208          381 WGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS  419 (468)
Q Consensus       381 ~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~  419 (468)
                      |+++.+.++++++++..||+|.++++.+...-...+++.
T Consensus       280 FTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a  318 (337)
T KOG1580|consen  280 FTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKA  318 (337)
T ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcC
Confidence            999999999999999999999999999988766655543

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.42  E-value=1.7e-12  Score=107.95  Aligned_cols=135  Identities=20%  Similarity=0.322  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhh
Q 012208          261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP  340 (468)
Q Consensus       261 G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (468)
                      ..++++++++++++..++.|--.++   +||...++.+.++..+++..+....+........++.              .
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~---vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k--------------~   66 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEG---VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPK--------------S   66 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc---cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcc--------------e
Confidence            4689999999999999999877776   5888888888888887777776666654444333322              2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 012208          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQ  413 (468)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~  413 (468)
                      |..++..| ++++++..+|++|++..+++++..+.-+.|+++++++++++||+++..+++|+++|++|.+++.
T Consensus        67 ~lflilSG-la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          67 WLFLILSG-LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             ehhhhHHH-HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            44454444 7789999999999999999999999999999999999999999999999999999999987754

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=4.9e-11  Score=114.83  Aligned_cols=281  Identities=14%  Similarity=0.082  Sum_probs=214.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhhcCC-HHHHH--HHHHHHHHHHHHHHHHHh-----cccccchhhHHHHHHHHHHHHHH
Q 012208          127 IFLLNVITIVYASDIPILKAAEEIMH-PASFC--AVRFVMSAIPFLPFVFWA-----RDDVKTRNAGIELGLWVSLGYFV  198 (468)
Q Consensus       127 ~ll~lla~~~wg~~~~~~k~~~~~~~-p~~~~--~~R~~~a~l~ll~~~~~~-----~~~~~~~~~~l~~gl~~~~~~~~  198 (468)
                      +...+.-.+.--.+.+..|.+....+ |..+.  ..+++...+.+...-+.+     .-+++..+.+++..++.....+.
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t   93 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFT   93 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHH
Confidence            44444444444556777787655433 44444  478877666665443332     12355667788888888888888


Q ss_pred             HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCCCC-cHHHHHHHHHHHHHHHHH
Q 012208          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHM  276 (468)
Q Consensus       199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~~~-~~G~llallaa~~~a~~~  276 (468)
                      -..+++|+++...+++....|+++++... ++|.|++...+.++....+|......++..+ ..|+.+++...+.-+.+.
T Consensus        94 ~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~  173 (314)
T KOG1444|consen   94 GSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFV  173 (314)
T ss_pred             ccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998 8999999999999999999999888776544 458999999999999999


Q ss_pred             HHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHH
Q 012208          277 LRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICL  356 (468)
Q Consensus       277 v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~  356 (468)
                      +..|+..+.. +.+-..+++|..+++.+.+.....+.+...... ...        -+|.....|..++..++++.++.|
T Consensus       174 v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~-~~~--------~~~~~~~~~~~~~lScv~gf~isy  243 (314)
T KOG1444|consen  174 VYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILSFITGELDALS-LNF--------DNWSDSSVLVVMLLSCVMGFGISY  243 (314)
T ss_pred             HHHHHhhccc-cccceeEEeehhHHHHHHHHHHHHHhcchHHHH-hhc--------ccccchhHHHHHHHHHHHHHHHHH
Confidence            9999887653 356677888988888888877776665432100 000        013334468888888999989999


Q ss_pred             HHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208          357 WIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS  418 (468)
Q Consensus       357 ~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~  418 (468)
                      .. .+..+..+++..+++...+...+.+...+++|++.++...+|..+-+.|.+++++.+.+
T Consensus       244 ~s-~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~  304 (314)
T KOG1444|consen  244 TS-FLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFR  304 (314)
T ss_pred             HH-HHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhh
Confidence            77 58999999999999997777777777777788899999999999999999988876644

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.38  E-value=7.9e-11  Score=111.93  Aligned_cols=254  Identities=13%  Similarity=0.041  Sum_probs=187.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc---ccc-------chhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHH
Q 012208          153 PASFCAVRFVMSAIPFLPFVFWARD---DVK-------TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVV  222 (468)
Q Consensus       153 p~~~~~~R~~~a~l~ll~~~~~~~~---~~~-------~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~  222 (468)
                      |+.++.+++++-.++.....+..+.   +.+       ..++..+.|++.+....+.+++++|++.+.-++..+.+++|+
T Consensus        45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FI  124 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFI  124 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHH
Confidence            8888888887776666554443221   111       123344667788888899999999999999999999999999


Q ss_pred             HHHHHHhc-CccchhHHHHHHHHHHhhhhhccCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhHHHHH
Q 012208          223 PLFDGMLG-AIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTK--KENFLPLLGYE  298 (468)
Q Consensus       223 ~ll~~~l~-er~~~~~~~gi~l~l~Gv~li~~~~~~~-~~G~llallaa~~~a~~~v~~r~~~~~~~--~~~~~~~~~~~  298 (468)
                      .+++.++| |++++.-..-++++.+|+++.+..+.++ ..|.++.++++++-++.-.+.+.+.++.+  ..+|....+..
T Consensus       125 llFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l  204 (349)
T KOG1443|consen  125 LLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHL  204 (349)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHh
Confidence            99999777 9999999999999999999998776554 58999999999999988888888877654  34677777776


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCc-hhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhh
Q 012208          299 ICVVALLSTIWVLVGGWFDSSQDFDQSPW-TWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGL  377 (468)
Q Consensus       299 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l  377 (468)
                      .-...+.++|..+..+++......+.... .....     ......+...|..+.++.+.. +.-+.+++....++....
T Consensus       205 ~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~-----~rv~g~i~l~g~laF~l~~sE-flLl~~Ts~ltlSIaGI~  278 (349)
T KOG1443|consen  205 QPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLI-----LRVIGLISLGGLLAFLLEFSE-FLLLSRTSSLTLSIAGIV  278 (349)
T ss_pred             hhHHHHHHHHHHHHHcccccchhhhHHHhcCccHH-----HHHHHHHHHHHHHHHHHHHHH-HheeeeccceeeeHHHHH
Confidence            77777777777777766544322111100 00000     001122222222333333333 467889999999999999


Q ss_pred             HHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHH
Q 012208          378 EPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLV  412 (468)
Q Consensus       378 ~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~  412 (468)
                      .-+-..+++.++.++.++...|.|..+...|+.+.
T Consensus       279 Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  279 KEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998887

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.37  E-value=7.8e-11  Score=112.08  Aligned_cols=254  Identities=13%  Similarity=0.148  Sum_probs=196.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcc---cccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-
Q 012208          152 HPASFCAVRFVMSAIPFLPFVFWARD---DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-  227 (468)
Q Consensus       152 ~p~~~~~~R~~~a~l~ll~~~~~~~~---~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-  227 (468)
                      ++..+.+.+-+.+.++-..++.+++.   .++.++.+...++.+.++..+.|.|++|++--.-.+-...=-+-+++++. 
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~L  129 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTL  129 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHH
Confidence            57788888888888777666555432   23456667778888999999999999999976666656655555667776 


Q ss_pred             HhcCccchhHHHHHHHHHHhhhhhccCC----------CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHH
Q 012208          228 MLGAIIPAHTWFGVLISALGVGMLECSG----------SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY  297 (468)
Q Consensus       228 ~l~er~~~~~~~gi~l~l~Gv~li~~~~----------~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~  297 (468)
                      +.|.|++..+.+..+++-+||.+....+          ....+|+.+....-++-+..+..+.++.++. +++...++++
T Consensus       130 vy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~  208 (327)
T KOG1581|consen  130 VYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFG  208 (327)
T ss_pred             HhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHH
Confidence            6899999999999999999999876432          1336899999999999999999999998864 5789999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhh
Q 012208          298 EICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGL  377 (468)
Q Consensus       298 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l  377 (468)
                      ..+++.+......+..+....  ....         --.+++.+.-++....++ .+++.+-++-+++.|+...+.++.+
T Consensus       209 vNLf~~i~~~~~li~qg~~~~--av~F---------~~~hp~~~~Di~l~s~~g-avGQ~FI~~TI~~FGslt~t~I~tt  276 (327)
T KOG1581|consen  209 VNLFSAILNGTYLILQGHLLP--AVSF---------IKEHPDVAFDILLYSTCG-AVGQLFIFYTIERFGSLTFTTIMTT  276 (327)
T ss_pred             HHHHHHHHHHHhhhcCCCCch--HHHH---------HHcChhHHHHHHHHHHhh-hhhhheehhhHhhcccHHHHHHHHH
Confidence            999998887766433332211  1110         011234566666667765 5666666799999999999999999


Q ss_pred             HHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208          378 EPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS  418 (468)
Q Consensus       378 ~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~  418 (468)
                      .-+++++++.+++|+++++.||+|..++++|+.+-.+.+.+
T Consensus       277 Rk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  277 RKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            99999999999999999999999999999999987776655

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.33  E-value=4.7e-09  Score=102.70  Aligned_cols=276  Identities=13%  Similarity=0.149  Sum_probs=189.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhh-c---CCHHHHHHHHHHHHHHHHHHHHHHhccc-----cc-----------chhh
Q 012208          125 RSIFLLNVITIVYASDIPILKAAEE-I---MHPASFCAVRFVMSAIPFLPFVFWARDD-----VK-----------TRNA  184 (468)
Q Consensus       125 ~g~ll~lla~~~wg~~~~~~k~~~~-~---~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~-----------~~~~  184 (468)
                      .-.+.+++..+.++...+..|+... +   +.|....++--++-.++...+.++..+.     .+           ...+
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            4456667777888888999998543 2   5677777777766666666555544211     00           0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC---C-----
Q 012208          185 GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS---G-----  255 (468)
Q Consensus       185 ~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~---~-----  255 (468)
                      ..+-+++.++.+-++|.++.+++++.-++...+-.+.|+++.. ++++|.++.+|.++++.+.|+.++..+   +     
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~  174 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS  174 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence            2233556677777999999999999999999999999999999 899999999999999999999998722   1     


Q ss_pred             ----CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCCCCCchhh
Q 012208          256 ----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYE-ICVVALLSTIWVLVGGWFDSSQDFDQSPWTWT  330 (468)
Q Consensus       256 ----~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~  330 (468)
                          .....|....+.+++.-+...++.+++.++..  .++.+...+ ..++.++.+...+..+. .... ....-..  
T Consensus       175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~--~s~wi~NiqL~~~g~~f~~l~~~~~d~-~~i~-~~gff~G--  248 (345)
T KOG2234|consen  175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN--VSLWIRNIQLYFFGILFNLLTILLQDG-EAIN-EYGFFYG--  248 (345)
T ss_pred             CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHhhccc-cccc-cCCcccc--
Confidence                12358999999999999999999999998753  334343333 33344444433333322 2221 1111111  


Q ss_pred             hhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHH
Q 012208          331 MLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSL  410 (468)
Q Consensus       331 ~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~  410 (468)
                        |+   ...|..++..++.+-     +...-+++.+-..=+....+..+++.+.++.++|.+||....+|..+++.++.
T Consensus       249 --~s---~~vw~vVl~~a~gGL-----lvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~  318 (345)
T KOG2234|consen  249 --YS---SIVWLVVLLNAVGGL-----LVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIF  318 (345)
T ss_pred             --cc---HHHHHHHHHHhccch-----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Confidence              11   112444444444333     33344566666666666778889999999999999999999999999999999


Q ss_pred             HHHhcc
Q 012208          411 LVQMYR  416 (468)
Q Consensus       411 l~~~~~  416 (468)
                      ++...+
T Consensus       319 lY~~~P  324 (345)
T KOG2234|consen  319 LYSLYP  324 (345)
T ss_pred             HhhcCC
Confidence            988443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.33  E-value=2.4e-10  Score=109.59  Aligned_cols=208  Identities=15%  Similarity=0.121  Sum_probs=151.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC-----
Q 012208          183 NAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS-----  256 (468)
Q Consensus       183 ~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~-----  256 (468)
                      .+..+-+++..+.+.+.+.++++++++.-.++..+-.+++++++. ++|+|+++++|+++++.+.|++++..++.     
T Consensus        18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~   97 (244)
T PF04142_consen   18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN   97 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence            344555788899999999999999999999999999999999999 89999999999999999999999753311     


Q ss_pred             -------------CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 012208          257 -------------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFD  323 (468)
Q Consensus       257 -------------~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~  323 (468)
                                   ....|.++.++++++-++..++.+++.|+.+ .+...........+.++.++.....+ .....+..
T Consensus        98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~-~~~~~~~g  175 (244)
T PF04142_consen   98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSD-GSAISESG  175 (244)
T ss_pred             ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCC
Confidence                         1248999999999999999999999999864 34343344444444444444332222 22211111


Q ss_pred             CCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHH
Q 012208          324 QSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAA  403 (468)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~  403 (468)
                      ..     ..|+        ...+..++...++=.+....+|+.+...=+.......+++.++++++||.+++....+|++
T Consensus       176 ~f-----~G~~--------~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~  242 (244)
T PF04142_consen  176 FF-----HGYS--------WWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA  242 (244)
T ss_pred             ch-----hhcc--------hHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence            10     0111        1112222333333344466789999998899999999999999999999999999999987


Q ss_pred             HH
Q 012208          404 LV  405 (468)
Q Consensus       404 lI  405 (468)
                      ++
T Consensus       243 ~V  244 (244)
T PF04142_consen  243 LV  244 (244)
T ss_pred             cC
Confidence            63

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.31  E-value=1.5e-11  Score=104.77  Aligned_cols=125  Identities=22%  Similarity=0.384  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHH
Q 012208          270 IFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI  349 (468)
Q Consensus       270 ~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv  349 (468)
                      ++||.+.+..|+..++   .|+....++++..+++ ..+......... ....+              ...+...++.++
T Consensus         1 ~~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~--------------~~~~~~~~~~~~   61 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLILGRKP-FKNLS--------------PRQWLWLLFLGL   61 (126)
T ss_pred             ceeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHhhcccc-ccCCC--------------hhhhhhhhHhhc
Confidence            4688999999999887   4889999999999987 555555544322 11111              123666788888


Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 012208          350 FSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQ  413 (468)
Q Consensus       350 ~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~  413 (468)
                      +++++++.++++++++.+++.++++.+++|+++.++++++++|++++.+++|++++++|+++..
T Consensus        62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   62 LGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             cceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999998865

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.30  E-value=5.4e-10  Score=104.92  Aligned_cols=225  Identities=20%  Similarity=0.275  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC---------
Q 012208          186 IELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG---------  255 (468)
Q Consensus       186 l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~---------  255 (468)
                      +.-+++-..+..++|.++.+++++.-+++-....+|+.+++. +++++++.++|+|++....|++.+-..+         
T Consensus        90 l~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~  169 (372)
T KOG3912|consen   90 LPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYT  169 (372)
T ss_pred             cChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcc
Confidence            345788888999999999999999999999999999999999 9999999999999999999999875431         


Q ss_pred             --CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhc
Q 012208          256 --SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW  333 (468)
Q Consensus       256 --~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  333 (468)
                        +....|+++.+++-+.-|+..++-+|..++++ ++|+....|+.+++.++...+.......+..++.+..+  .....
T Consensus       170 d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n-V~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~--~g~~e  246 (372)
T KOG3912|consen  170 DYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN-VAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNP--RGVLE  246 (372)
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCC--Ccchh
Confidence              23368999999999999999999999998864 79999999999998666554444433222221121111  01111


Q ss_pred             cccchhh---HHHHHHHHHHHHHHHHHHHHH----HhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHH
Q 012208          334 DWMVTFP---WVPALYTGIFSTGICLWIEIA----AMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVL  406 (468)
Q Consensus       334 ~~~~~~~---~~~ll~lgv~~~~~~~~l~~~----al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi  406 (468)
                      ||.+...   =...+++++.+..++-.+++.    --+..+++.-.+.-.+...+--+++..+..|.+...|+.|.++.+
T Consensus       247 D~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi  326 (372)
T KOG3912|consen  247 DWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILI  326 (372)
T ss_pred             hHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            2211100   001233444444443333332    245567777778888888888888888899999999999999999


Q ss_pred             HHHHHHH
Q 012208          407 GGSLLVQ  413 (468)
Q Consensus       407 ~Gv~l~~  413 (468)
                      .|+++++
T Consensus       327 ~Gi~lY~  333 (372)
T KOG3912|consen  327 MGIILYN  333 (372)
T ss_pred             HHHHHHH
Confidence            9999876

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.25  E-value=4.8e-11  Score=101.66  Aligned_cols=117  Identities=18%  Similarity=0.246  Sum_probs=97.3

Q ss_pred             HHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcc------cccchhhHHHHHHH-HHHHHHHHHHHHhcCc
Q 012208          135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD------DVKTRNAGIELGLW-VSLGYFVEALGLLTSD  207 (468)
Q Consensus       135 ~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~------~~~~~~~~l~~gl~-~~~~~~~~~~Al~~~~  207 (468)
                      ++||...++.|...++++|....++|+..+.+ ++++....++      +.+.+...+..|.+ ...++.++++++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   79 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS   79 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence            46999999999999899999999999999997 4444433221      12223344555665 5788999999999999


Q ss_pred             hhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208          208 AGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (468)
Q Consensus       208 ~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~  252 (468)
                      ++.++++..+.|+++.++++ ++||++++.+++|+++++.|++++.
T Consensus        80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998 7999999999999999999999874

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.08  E-value=6.3e-10  Score=99.35  Aligned_cols=214  Identities=12%  Similarity=0.050  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC---CCcHHHHH
Q 012208          189 GLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS---PPSVGDFL  264 (468)
Q Consensus       189 gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~---~~~~G~ll  264 (468)
                      .+++...++.|..|+..+++++++.+......|+.++++ .+|+|+...++++.++++.|+++++..++   +...|+.+
T Consensus        60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~  139 (290)
T KOG4314|consen   60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIAC  139 (290)
T ss_pred             EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHH
Confidence            445667889999999999999999999999999999999 79999999999999999999999996654   56799999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCchh-HHHHHHHHHHHHHHHH-HHHhhcCCCCCCCCCCCchhhhhccccchhhHH
Q 012208          265 NFLSAIFFGIHMLRTERISRSTKKENFLP-LLGYEICVVALLSTIW-VLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWV  342 (468)
Q Consensus       265 allaa~~~a~~~v~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (468)
                      +..+++..|+|.+.-|+......-=+.-. +....++=-.+...|. .+.....+.++.....+              |.
T Consensus       140 AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~P--------------WG  205 (290)
T KOG4314|consen  140 AVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAP--------------WG  205 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCC--------------ch
Confidence            99999999999999998876532001111 1111111111112221 12222222222222222              66


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208          343 PALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS  417 (468)
Q Consensus       343 ~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~  417 (468)
                      .+...+.+.....+. .+.++....|...++.+........+++.++-+-..+...+.|..+|++|.+++.....
T Consensus       206 ~l~G~A~L~lAFN~~-iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d  279 (290)
T KOG4314|consen  206 CLCGAAGLSLAFNFL-INFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED  279 (290)
T ss_pred             hhhhHHHHHHHHhhh-eeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence            676666666555554 47899999999999999999999999998766667888889999999999888776443

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.08  E-value=4.2e-08  Score=94.06  Aligned_cols=235  Identities=13%  Similarity=0.106  Sum_probs=162.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccc----cchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHh-hhhHHHHHHHH
Q 012208          152 HPASFCAVRFVMSAIPFLPFVFWARDDV----KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS-LFTVIVVPLFD  226 (468)
Q Consensus       152 ~p~~~~~~R~~~a~l~ll~~~~~~~~~~----~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~-~~~Pl~~~ll~  226 (468)
                      +|.+.++.-..-+.++-+......++..    ......++.|+++.+++.+.+.|+++..++.+.+|. .++-+.+.+++
T Consensus        11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g   90 (269)
T PF06800_consen   11 KPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG   90 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence            3444444444444444444444444433    334445677899999999999999999999999996 67777788888


Q ss_pred             H-HhcCccchhH----HHHHHHHHHhhhhhccCCC---------CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCch
Q 012208          227 G-MLGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFL  292 (468)
Q Consensus       227 ~-~l~er~~~~~----~~gi~l~l~Gv~li~~~~~---------~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~  292 (468)
                      . +++|--+..+    .+++++.++|+++.+..+.         ....|....+++.++|..|.+..|..     +.+++
T Consensus        91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~-----~~~~~  165 (269)
T PF06800_consen   91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF-----HVSGW  165 (269)
T ss_pred             HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----CCChh
Confidence            8 7999777654    4488889999998875432         12468999999999999999986652     14666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHH
Q 012208          293 PLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETA  372 (468)
Q Consensus       293 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s  372 (468)
                      ....-+.+...+..+.+....  .....  ...              .|..+  ++.+.-.++..++..+.+..+.+.+=
T Consensus       166 ~~~lPqaiGm~i~a~i~~~~~--~~~~~--~k~--------------~~~ni--l~G~~w~ignl~~~is~~~~G~a~af  225 (269)
T PF06800_consen  166 SAFLPQAIGMLIGAFIFNLFS--KKPFF--EKK--------------SWKNI--LTGLIWGIGNLFYLISAQKNGVATAF  225 (269)
T ss_pred             HhHHHHHHHHHHHHHHHhhcc--ccccc--ccc--------------hHHhh--HHHHHHHHHHHHHHHhHHhccchhhh
Confidence            666655444444333333322  11111  111              12332  33444567888889999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHhCCccchh----hHHHHHHHHHHHHH
Q 012208          373 IIYGLEPLWGAGFAWFLLGERWSTA----GWIGAALVLGGSLL  411 (468)
Q Consensus       373 ~~~~l~pv~a~l~~~~llgE~~t~~----~~iG~~lIi~Gv~l  411 (468)
                      .+.-+.++++.+.+.+++||+=+..    .++|.++|++|.++
T Consensus       226 ~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  226 TLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999987765    45688888887654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.06  E-value=2.2e-09  Score=90.63  Aligned_cols=98  Identities=18%  Similarity=0.220  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHhccc--------ccchhhHHHHHHHHH-HHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-
Q 012208          158 AVRFVMSAIPFLPFVFWARDD--------VKTRNAGIELGLWVS-LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-  227 (468)
Q Consensus       158 ~~R~~~a~l~ll~~~~~~~~~--------~~~~~~~l~~gl~~~-~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-  227 (468)
                      .+|++.+.+++..+...+++.        .+.+.+.+..|+++. .++.++++|+++.| +.++++.+++|+++.+++. 
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            578888888888777664322        122334455577665 88999999999999 5889999999999999999 


Q ss_pred             HhcCccchhHHHHHHHHHHhhhhhccCCC
Q 012208          228 MLGAIIPAHTWFGVLISALGVGMLECSGS  256 (468)
Q Consensus       228 ~l~er~~~~~~~gi~l~l~Gv~li~~~~~  256 (468)
                      ++|||+++++++++++++.|++++..++.
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            89999999999999999999999987653

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.04  E-value=1.5e-08  Score=92.33  Aligned_cols=266  Identities=10%  Similarity=0.049  Sum_probs=197.0

Q ss_pred             hHHHHHHHhh--cCC-HHHHHHHHHHHHHHHHHHHHHHh--cccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 012208          140 DIPILKAAEE--IMH-PASFCAVRFVMSAIPFLPFVFWA--RDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFI  214 (468)
Q Consensus       140 ~~~~~k~~~~--~~~-p~~~~~~R~~~a~l~ll~~~~~~--~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii  214 (468)
                      +.+..|+..+  ++. -+.+++++.+...+.++++-+.+  +-+....+.+.+..++.....+..--+++|+++..-++.
T Consensus        21 mTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiF  100 (309)
T COG5070          21 MTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIF  100 (309)
T ss_pred             HHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHh
Confidence            4555676544  233 45667777777776666554443  223444556677788888888888889999999999999


Q ss_pred             hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCCC--------CCcHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012208          215 SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--------PPSVGDFLNFLSAIFFGIHMLRTERISRS  285 (468)
Q Consensus       215 ~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~--------~~~~G~llallaa~~~a~~~v~~r~~~~~  285 (468)
                      ..+..++++.... ++|.|++-.+....++.+..-+.-..++.        ..+.|++++..-.+.-+.+....|+..+-
T Consensus       101 KNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~l  180 (309)
T COG5070         101 KNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKL  180 (309)
T ss_pred             ccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcc
Confidence            9999999998888 89999999999988777776666555543        45789999999999999999998877654


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012208          286 TKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRD  365 (468)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~  365 (468)
                      .. ..-...++|..+++.++++.+....+.+....-...           .+.....++.+.|+++.+++|.- .+.++.
T Consensus       181 tN-f~d~dtmfYnNllslPiL~~~s~~~edws~~n~ann-----------l~~d~l~am~ISgl~svgiSy~s-aWcvrV  247 (309)
T COG5070         181 TN-FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANN-----------LSVDSLMAMFISGLCSVGISYCS-AWCVRV  247 (309)
T ss_pred             cc-cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcC-----------CChHHHHHHHHHHHHHhhhhhcc-ceeEee
Confidence            32 234566788888888877777666554322211111           11223556677788877778755 689999


Q ss_pred             CChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208          366 VSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS  418 (468)
Q Consensus       366 ~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~  418 (468)
                      .+.+..+++..++-.-..+-|.++|+|+.+...+....+-..+.+++...+.+
T Consensus       248 tSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~  300 (309)
T COG5070         248 TSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSK  300 (309)
T ss_pred             hhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888887777777665443

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=1.4e-10  Score=108.57  Aligned_cols=256  Identities=16%  Similarity=0.133  Sum_probs=195.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcc------------cccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhH
Q 012208          152 HPASFCAVRFVMSAIPFLPFVFWARD------------DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTV  219 (468)
Q Consensus       152 ~p~~~~~~R~~~a~l~ll~~~~~~~~------------~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~P  219 (468)
                      .|..+++.+.++...+...+-...++            +.+..+..+.+.+...++..+-++.++|++++.-.+--++.-
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence            48888888888877766655433211            111223344556666667778888999999998888889999


Q ss_pred             HHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC----CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhH
Q 012208          220 IVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPL  294 (468)
Q Consensus       220 l~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~----~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~  294 (468)
                      +|++++.+ ++|++-+.....+.++++.|-.+=+.-+    .....|.+++.++.++-|+..+..|+.....+ .....+
T Consensus       140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~-~~iw~l  218 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVG-DCIWRL  218 (347)
T ss_pred             hHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhheeccccc-Ceehhh
Confidence            99999999 8999999998888888888877644322    23468999999999999999999998765543 245777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHH
Q 012208          295 LGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAII  374 (468)
Q Consensus       295 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~  374 (468)
                      ++|..+.+.++.+|.+.+.+........+..+          ...+|..+...|+++..++|.- .+=+|.++|..-.+-
T Consensus       219 t~ynnv~a~lLflpll~lnge~~~v~~~~~l~----------a~~Fw~~mtLsglfgF~mgyvT-g~QIK~TSplThnIS  287 (347)
T KOG1442|consen  219 TAYNNVNALLLFLPLLILNGEFQAVVGFPHLP----------AIKFWILMTLSGLFGFAMGYVT-GWQIKVTSPLTHNIS  287 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHHHcCcccch----------HHHHHHHHHHHHHHHHHhhhee-eEEEEecccceeeec
Confidence            88999999999999888876555444332221          1235888888888888888865 466888899888877


Q ss_pred             hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCCC
Q 012208          375 YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSSS  419 (468)
Q Consensus       375 ~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~~  419 (468)
                      ..-.-....+++..+++|.-+..-|-|-.+|++|...+.+.++++
T Consensus       288 gTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~e  332 (347)
T KOG1442|consen  288 GTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHE  332 (347)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHH
Confidence            777888888899999999999999999999999999998876543

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.02  E-value=6.7e-09  Score=92.21  Aligned_cols=148  Identities=16%  Similarity=0.110  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhcccc
Q 012208          261 GDFLNFLSAIFFGIHMLRTERISRST----KKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWM  336 (468)
Q Consensus       261 G~llallaa~~~a~~~v~~r~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  336 (468)
                      |.++++++.++.+++.++.|+..++.    .+.++..+..+....+.++.++.....+.............     .+..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~-----~~~~   75 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFG-----EELS   75 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhh-----hhhc
Confidence            67899999999999999999998874    56799999999999999999988887765432221110000     0000


Q ss_pred             -chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208          337 -VTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM  414 (468)
Q Consensus       337 -~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~  414 (468)
                       ....+..++..|+++.+ -....+..+++.+|...++...+..+..++++++++||++++.+++|.++.++|++++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~-~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   76 SDPNFIFLLILSGLLAFL-YNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence             11235556666666544 444557899999999999999999999999999999999999999999999999987653

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.01  E-value=1.3e-08  Score=100.00  Aligned_cols=134  Identities=16%  Similarity=0.082  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhH
Q 012208          262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW  341 (468)
Q Consensus       262 ~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (468)
                      .++.++++++++...+..|+..++.   ++  ...+......++..|+..........+..+.               .|
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------~~   62 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE---PD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPA---------------TF   62 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch---hH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcch---------------hh
Confidence            4688999999999999999887662   22  2344455555555555443211111111110               13


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208          342 VPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY  415 (468)
Q Consensus       342 ~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~  415 (468)
                      +..+..+.+.....+.++++++++.+++.++++.++.|+++.+++++++||+++..+++|.+++++|+++....
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            34455566677888889999999999999999999999999999999999999999999999999999887653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.95  E-value=2.3e-08  Score=96.78  Aligned_cols=127  Identities=23%  Similarity=0.280  Sum_probs=103.0

Q ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHHhccccc----chhhHHHHHHHH-HHH
Q 012208          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHP--ASFCAVRFVMSAIPFLPFVFWARDDVK----TRNAGIELGLWV-SLG  195 (468)
Q Consensus       123 ~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p--~~~~~~R~~~a~l~ll~~~~~~~~~~~----~~~~~l~~gl~~-~~~  195 (468)
                      ...|.++.++++++|+...+..|...++.++  .....+++.++.++++++....++...    .+...+..+++. .++
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA  205 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999998876774  455557888888888877665433221    122234445553 678


Q ss_pred             HHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhh
Q 012208          196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVG  249 (468)
Q Consensus       196 ~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~  249 (468)
                      +.++++++++.+++.++++.++.|+++.++++ ++||+++..+++|+++.+.|+.
T Consensus       206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            89999999999999999999999999999999 8999999999999999999873

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.93  E-value=1.4e-06  Score=86.87  Aligned_cols=283  Identities=13%  Similarity=-0.010  Sum_probs=169.1

Q ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHH-HHHHHHHHHH---HHHHH-------hcccccchhhHHHHHH
Q 012208          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAV-RFVMSAIPFL---PFVFW-------ARDDVKTRNAGIELGL  190 (468)
Q Consensus       122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~-R~~~a~l~ll---~~~~~-------~~~~~~~~~~~l~~gl  190 (468)
                      +...|++..+++.++||+.++..|... . -.++.... -..+..+++-   ..+..       +..+.......++.|+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k-~-w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~   81 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKVK-K-WSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA   81 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccccC-C-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence            456799999999999999999999832 2 22222211 1111111111   11111       1123344555677789


Q ss_pred             HHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCcc-------chhHHHHHHHHHHhhhhhcc----CC--
Q 012208          191 WVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAII-------PAHTWFGVLISALGVGMLEC----SG--  255 (468)
Q Consensus       191 ~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~-------~~~~~~gi~l~l~Gv~li~~----~~--  255 (468)
                      +..+++.+++.++++...+.+..| ..+.-++..++.. +++|=.       ...-.+|+++.++|+++...    .+  
T Consensus        82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~  161 (345)
T PRK13499         82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERK  161 (345)
T ss_pred             HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            999999999999999999999888 4788888888887 555422       23467899999999999875    21  


Q ss_pred             --------CCCcHHHHHHHHHHHHHHHHHH-------HHHHHhhccCCCCchhHHHHHHH---HHHHHHHHH-HHHh-hc
Q 012208          256 --------SPPSVGDFLNFLSAIFFGIHML-------RTERISRSTKKENFLPLLGYEIC---VVALLSTIW-VLVG-GW  315 (468)
Q Consensus       256 --------~~~~~G~llallaa~~~a~~~v-------~~r~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~-~l~~-~~  315 (468)
                              .....|.++++++++.+++|..       ..+.... . +.++.....-+..   +++++.-+. .... ..
T Consensus       162 ~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~-g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k  239 (345)
T PRK13499        162 MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-L-GVDPLYAALPSYVVIMGGGAITNLGFCFIRLAK  239 (345)
T ss_pred             cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-c-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    1236899999999999999993       3222111 1 2344433333333   333322221 1111 01


Q ss_pred             CCCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHH----HHhhhHHHHHHHHHHHHhC
Q 012208          316 FDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETA----IIYGLEPLWGAGFAWFLLG  391 (468)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s----~~~~l~pv~a~l~~~~llg  391 (468)
                      ..............+..+     + =..+..++.+.-.+++.+|..+-+..+.....    +.+.+..+++.+.+. +++
T Consensus       240 ~~~~~~~~~~~~~~~~~~-----~-n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lk  312 (345)
T PRK13499        240 NKDLSLKADFSLAKPLLI-----T-NVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLK  312 (345)
T ss_pred             CCCcccchhccccchhHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhh
Confidence            111100000000000000     0 01122334444566777888888777554333    333777799999998 599


Q ss_pred             Cccc------hhhHHHHHHHHHHHHHHHhc
Q 012208          392 ERWS------TAGWIGAALVLGGSLLVQMY  415 (468)
Q Consensus       392 E~~t------~~~~iG~~lIi~Gv~l~~~~  415 (468)
                      |.=+      ...++|.+++++|..++...
T Consensus       313 E~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        313 EWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             hccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            9766      55689999999999887654

>TIGR00688 rarD rarD protein

Probab=98.90  E-value=4.1e-08  Score=95.07  Aligned_cols=140  Identities=17%  Similarity=0.220  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCCCCchhhhhccccch
Q 012208          260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSS-QDFDQSPWTWTMLWDWMVT  338 (468)
Q Consensus       260 ~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~  338 (468)
                      .|.++.++++++|+...+..|.. .+   .++..+.+++++++.++..++.......... ........  .        
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~~---~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~--------   67 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-KP---LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQK--R--------   67 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-cc---CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCccc--c--------
Confidence            48899999999999999999974 33   6899999999999887766554443211000 00000000  0        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208          339 FPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM  414 (468)
Q Consensus       339 ~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~  414 (468)
                      +.+..+...|++ .++.+.+++.++++.+++.++.+.++.|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus        68 ~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        68 PLILSLLLCGLL-IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            002233334443 678889999999999999999999999999999999999999999999999999999987754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.87  E-value=4.1e-08  Score=97.24  Aligned_cols=140  Identities=16%  Similarity=0.164  Sum_probs=108.7

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccc
Q 012208          258 PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMV  337 (468)
Q Consensus       258 ~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (468)
                      ...|.+++++++++|+...+..|.. .+   .+|..+.+++..++.++..++............. ...           
T Consensus         6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~~---~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~-~~~-----------   69 (296)
T PRK15430          6 TRQGVLLALAAYFIWGIAPAYFKLI-YY---VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL-IQT-----------   69 (296)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHh-cC---CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH-HcC-----------
Confidence            3579999999999999999999764 33   5889999999999987776655433210000000 000           


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208          338 TFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM  414 (468)
Q Consensus       338 ~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~  414 (468)
                      ...+ .....+.++.++.+.++++++++.+++.++++.++.|++..++++++++|+++..+++|+++.++|++++..
T Consensus        70 ~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         70 PQKI-FMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            0012 233466777788899999999999999999999999999999999999999999999999999999988764

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.78  E-value=8e-08  Score=94.88  Aligned_cols=262  Identities=13%  Similarity=0.109  Sum_probs=150.0

Q ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccccc-chhhHHHHHHH-HHHHHHHH
Q 012208          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLW-VSLGYFVE  199 (468)
Q Consensus       122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~l~~gl~-~~~~~~~~  199 (468)
                      +...|+++.++++++-+....+.|....+.+.   .-.|-             .++.++ .+...++.|+. +.++..+.
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~---~~~~~-------------~~~~~~~l~~~~W~~G~~~~~~g~~~~   67 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR---GSLRA-------------GSGGRSYLRRPLWWIGLLLMVLGEILN   67 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccc-------------cchhhHHHhhHHHHHHHHHHhcchHHH
Confidence            45678999999999999988888875432211   00000             001111 12223334443 56788899


Q ss_pred             HHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC--CCC--Cc----------HHH--
Q 012208          200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS--GSP--PS----------VGD--  262 (468)
Q Consensus       200 ~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~--~~~--~~----------~G~--  262 (468)
                      +.|+.+.|++..+++..+.-++..+++. ++|||+++.++.|+++++.|+.++..-  ...  ..          .+.  
T Consensus        68 ~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~  147 (300)
T PF05653_consen   68 FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLV  147 (300)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceeh
Confidence            9999999999999999999999999998 899999999999999999999886532  111  11          111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHH---HHHHhhcCCCCCCCCCCCchhhhhccccchh
Q 012208          263 FLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTI---WVLVGGWFDSSQDFDQSPWTWTMLWDWMVTF  339 (468)
Q Consensus       263 llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (468)
                      .+.+...+...+.....+|..++    +.+.....-.++++.-.+.   +.......  .......          .++.
T Consensus       148 y~~~~~~~~~~L~~~~~~r~g~~----~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~--~~g~~~f----------~~~~  211 (300)
T PF05653_consen  148 YFILVLVLILILIFFIKPRYGRR----NILVYISICSLIGSFTVLSAKAISILIKLT--FSGDNQF----------TYPL  211 (300)
T ss_pred             hHHHHHHHHHHHHHhhcchhccc----ceEEEEEEeccccchhhhHHHHHHHHHHHH--hcCchhh----------hhhH
Confidence            11111222222222223333222    2221111111111110000   00000000  0000000          0112


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHHHhCCc--cchh----hHHHHHHHHHHHHHH
Q 012208          340 PWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWFLLGER--WSTA----GWIGAALVLGGSLLV  412 (468)
Q Consensus       340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~llgE~--~t~~----~~iG~~lIi~Gv~l~  412 (468)
                      .|..++. .+++.+.+....++|+++.+++.+.++.+ .-...+++-+.++++|.  .++.    ...|..+++.|+++.
T Consensus       212 ~y~l~~~-~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL  290 (300)
T PF05653_consen  212 TYLLLLV-LVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLL  290 (300)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhee
Confidence            3444433 34455677778889999999988877766 44556667788888875  4443    456888899998887


Q ss_pred             Hhcc
Q 012208          413 QMYR  416 (468)
Q Consensus       413 ~~~~  416 (468)
                      ...+
T Consensus       291 ~~~~  294 (300)
T PF05653_consen  291 SSSK  294 (300)
T ss_pred             eccC
Confidence            6544

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.78  E-value=3.1e-07  Score=79.07  Aligned_cols=121  Identities=13%  Similarity=0.092  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchh
Q 012208          260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTF  339 (468)
Q Consensus       260 ~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (468)
                      .|.++.+++.++-+...++.|+-.++.+..+...   .     .+... .. ...                         
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~---~-----~~~~~-~~-~~~-------------------------   46 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW---D-----FIAAL-LA-FGL-------------------------   46 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh---H-----HHHHH-HH-Hhc-------------------------
Confidence            4788899999999999999998877653222111   0     00000 00 000                         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHH--HhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          340 PWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWF--LLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~--llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                       ....+++|+++.++++.+|.+++++.+++.+..+....+++..+.++.  ++||++++.+++|.++|++|++++...+
T Consensus        47 -p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         47 -ALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence             112467899999999999999999999999999999998888777775  8999999999999999999999987543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.78  E-value=2.1e-07  Score=94.28  Aligned_cols=139  Identities=17%  Similarity=0.104  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhh
Q 012208          261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP  340 (468)
Q Consensus       261 G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (468)
                      -...+++.-++|+.+.++.|...+..  +++..+.++++.+++++.+++..........+..     .|         +.
T Consensus        14 ~~~~~~~~q~~~~~~~~~~k~a~~~G--~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~-----~~---------~~   77 (358)
T PLN00411         14 FLTAMLATETSVVGISTLFKVATSKG--LNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPL-----SV---------SI   77 (358)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcc-----hH---------HH
Confidence            35566777889999999999888653  7999999999999998888876654321111111     11         12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHH------hCCccchhhHHHHHHHHHHHHHHHh
Q 012208          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFL------LGERWSTAGWIGAALVLGGSLLVQM  414 (468)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~l------lgE~~t~~~~iG~~lIi~Gv~l~~~  414 (468)
                      |..+..+|+++ .+.+.+++.++++++++.++++.++.|+++.++++++      ++|+++..+++|.++-++|+.++..
T Consensus        78 ~~~l~l~g~~g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         78 LSKIGLLGFLG-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            55666677776 4566678899999999999999999999999999999      6999999999999999999988775


Q ss_pred             cc
Q 012208          415 YR  416 (468)
Q Consensus       415 ~~  416 (468)
                      .+
T Consensus       157 ~~  158 (358)
T PLN00411        157 YH  158 (358)
T ss_pred             cc
Confidence            43

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.72  E-value=3.7e-07  Score=90.32  Aligned_cols=129  Identities=13%  Similarity=0.099  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccccc-c---hhhHHHHHHHH-HHHHHH
Q 012208          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK-T---RNAGIELGLWV-SLGYFV  198 (468)
Q Consensus       124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~---~~~~l~~gl~~-~~~~~~  198 (468)
                      ..|.++.++++++|+...+..|...++.++...... ..++.++++++......... .   +...+..|++. .+++.+
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIG-SLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH-HHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999988777788776544 45556666665554332111 1   11223445553 567889


Q ss_pred             HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (468)
Q Consensus       199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~  253 (468)
                      +++++++.+++.++++..+.|+++.++++ +++|+++..+++|.++.+.|+++...
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999 89999999999999999999988753

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.64  E-value=6.5e-07  Score=88.61  Aligned_cols=127  Identities=13%  Similarity=0.134  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccc---c--cchhhHHHHHHHHHHHHHH
Q 012208          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD---V--KTRNAGIELGLWVSLGYFV  198 (468)
Q Consensus       124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~--~~~~~~l~~gl~~~~~~~~  198 (468)
                      ..|.+++++++++|+...+..|...++.++....+   ..+.+.+.+........   .  ..+...+..|+..++++.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l  231 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA  231 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999998776677765432   22233333322222211   1  1122233345555678999


Q ss_pred             HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (468)
Q Consensus       199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~  253 (468)
                      +++++++++++.++.+.++.|++..++++ +++|+++..+++|.++++.|+++...
T Consensus       232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            99999999999999999999999999999 89999999999999999999987654

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.57  E-value=5.7e-07  Score=75.82  Aligned_cols=76  Identities=25%  Similarity=0.532  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS  417 (468)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~  417 (468)
                      |...+..|+++...++.++++++++.++ .++++..+.|+++.++++++++|+++..+++|.+++++|++++.+.+.
T Consensus        34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            4455666777777899999999999995 888999999999999999999999999999999999999999987654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.52  E-value=4e-06  Score=83.17  Aligned_cols=127  Identities=18%  Similarity=0.197  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhH
Q 012208          262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW  341 (468)
Q Consensus       262 ~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (468)
                      .+++++++++|+...+..|...++   ++|..+.++++.++++..+++..       .+.   ..              +
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~---~~p~~~~~~R~~~a~~~l~~~~~-------~~~---~~--------------~   58 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHN---MPPLMLAGLRFMLVAFPAIFFVA-------RPK---VP--------------L   58 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhc-------CCC---Cc--------------h
Confidence            466889999999999999987654   68999999999887765543321       010   01              2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-CChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208          342 VPALYTGIFSTGICLWIEIAAMRD-VSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY  415 (468)
Q Consensus       342 ~~ll~lgv~~~~~~~~l~~~al~~-~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~  415 (468)
                      ..++..|++.....+.+++.++++ .+++.++++.++.|+++.++++++++|+++..+++|.++.++|+.+....
T Consensus        59 ~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         59 NLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            223344554445555666788887 58899999999999999999999999999999999999999999888743

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.51  E-value=3.5e-06  Score=83.26  Aligned_cols=131  Identities=21%  Similarity=0.273  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHH
Q 012208          263 FLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWV  342 (468)
Q Consensus       263 llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (468)
                      +..++..+.|+...+..|...++   .+|..+.++++.+++++.+++......  ..+  ..              +.|.
T Consensus        11 ~~~~~~~~iWg~~~~~~K~~~~~---~~p~~~~~~R~~~a~l~ll~~~~~~~~--~~~--~~--------------~~~~   69 (292)
T PRK11272         11 GALFALYIIWGSTYLVIRIGVES---WPPLMMAGVRFLIAGILLLAFLLLRGH--PLP--TL--------------RQWL   69 (292)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHHHhCC--CCC--cH--------------HHHH
Confidence            44566788999999999977664   689999999999999887776544221  111  00              1245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-ccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208          343 PALYTGIFSTGICLWIEIAAM-RDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY  415 (468)
Q Consensus       343 ~ll~lgv~~~~~~~~l~~~al-~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~  415 (468)
                      ..+..|.+.....+.+++.+. ++.+++.++++.++.|+++.+++++ ++|+++..+++|.++.++|+.+....
T Consensus        70 ~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         70 NAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            556677776666777888888 9999999999999999999999985 79999999999999999999887643

>TIGR00803 nst UDP-galactose transporter

Probab=98.51  E-value=1.7e-06  Score=81.91  Aligned_cols=185  Identities=14%  Similarity=0.038  Sum_probs=108.7

Q ss_pred             HHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhh--------------------hccCC--------CCCcHHH
Q 012208          212 SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM--------------------LECSG--------SPPSVGD  262 (468)
Q Consensus       212 ~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~l--------------------i~~~~--------~~~~~G~  262 (468)
                      ....+..++++++..+ +.++|++..++++.++...|++.                    ...++        +....|.
T Consensus         8 ~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~g~   87 (222)
T TIGR00803         8 IIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVGL   87 (222)
T ss_pred             HHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHHHH
Confidence            3445566666666666 56677666677777776666653                    22111        1234566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHH
Q 012208          263 FLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWV  342 (468)
Q Consensus       263 llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (468)
                      ...+.+.++-+...++.++..++.+. ..........+.+.+.... .............+.. ..            +.
T Consensus        88 ~~~l~a~~~~~~~~~y~e~~~k~~~~-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~------------~~  152 (222)
T TIGR00803        88 SAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNLQLPLFGLFSTFS-VLLWSDGTLISNFGFF-IG------------YP  152 (222)
T ss_pred             HHHHHHHHHHhhhHHHHHHcccCCCC-chHHHHHHHHHHHHHHHHH-HHhhcccchhhccCcc-cC------------Cc
Confidence            66777777777788888877665321 1111111111111111111 1111111111111100 00            00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHH
Q 012208          343 PALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLL  411 (468)
Q Consensus       343 ~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l  411 (468)
                      ...+..++...++..+..+.+++.++...+....++++++.+++++++||+++..+++|+.+++.|+.+
T Consensus       153 ~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       153 TAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             hHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            111222233455666778899999999999999999999999999999999999999999999988654

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.48  E-value=1.7e-05  Score=74.80  Aligned_cols=256  Identities=11%  Similarity=0.011  Sum_probs=169.0

Q ss_pred             cCCH--HHHHHHHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHH
Q 012208          150 IMHP--ASFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLF  225 (468)
Q Consensus       150 ~~~p--~~~~~~R~~~a~l~ll~~~~~--~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll  225 (468)
                      ++.|  +.++++++++=..+.++.+..  .+++.-.++.+..++.+....+.+..-++.|+.--.-.+...+--+=+.+.
T Consensus        70 gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmig  149 (367)
T KOG1582|consen   70 GFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIG  149 (367)
T ss_pred             cCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhhe
Confidence            4553  455666655433333222211  123334456666666666556677777777777444334444333334455


Q ss_pred             HH-HhcCccchhHHHHHHHHHHhhhhhccCCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHH
Q 012208          226 DG-MLGAIIPAHTWFGVLISALGVGMLECSGS-----PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEI  299 (468)
Q Consensus       226 ~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~~-----~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~  299 (468)
                      +. +-+.|.++.+.++..+..+|+++....++     -+..|+++.-.|-++-|.-.-++++..+..+ .+...+.++..
T Consensus       150 gifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~-~ss~EmvfySy  228 (367)
T KOG1582|consen  150 GIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNP-ASSSEMVFYSY  228 (367)
T ss_pred             eeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCC-CCcceEEEeee
Confidence            55 45789999999999999999999876553     3468998888888888877777888777654 35566777777


Q ss_pred             HHHHHHHHHHHHHhhcCC-CCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhH
Q 012208          300 CVVALLSTIWVLVGGWFD-SSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLE  378 (468)
Q Consensus       300 ~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~  378 (468)
                      .++.+..++.....+... ........++           +.+...+..+. .+.++......-++..+|..++.+....
T Consensus       229 ~iG~vflf~~mvlTge~f~a~~fcaehp~-----------~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaR  296 (367)
T KOG1582|consen  229 GIGFVFLFAPMVLTGELFSAWTFCAEHPV-----------RTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTAR  296 (367)
T ss_pred             cccHHHHHHHHHhcccchhhhHHHHhCcH-----------hHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence            777777666655544221 1111111111           11233333333 3455565556678889999999999999


Q ss_pred             HHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208          379 PLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS  418 (468)
Q Consensus       379 pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~  418 (468)
                      --+++++++++|..++|....-|..+|+.|+++-.+.++.
T Consensus       297 KavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n  336 (367)
T KOG1582|consen  297 KAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN  336 (367)
T ss_pred             hHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence            9999999999999999999999999999999988877643

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.40  E-value=6.6e-06  Score=69.07  Aligned_cols=63  Identities=19%  Similarity=0.205  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208          191 WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (468)
Q Consensus       191 ~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~  253 (468)
                      +.+.+++++.+++++.|.+.+..+..+.++++.++++ ++|||++..+++|+++++.|++++..
T Consensus        46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3567889999999999999999999999999999999 89999999999999999999998764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.38  E-value=5e-06  Score=79.56  Aligned_cols=144  Identities=17%  Similarity=0.239  Sum_probs=114.5

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccc
Q 012208          258 PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMV  337 (468)
Q Consensus       258 ~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (468)
                      ...|+++++.+-+.|+.-..+.|-+..    .++..+..++.+.+.++.+..........+..+....            
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll~~----~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~------------   68 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLLEP----LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQ------------   68 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhC------------
Confidence            457999999999999999998887654    4778899999999988877766665543333222111            


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208          338 TFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS  417 (468)
Q Consensus       338 ~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~  417 (468)
                      ++.+......++. ......+|.+|..+.....+|...+++|++.+++|.++++|+++..|++..++..+|+....+...
T Consensus        69 p~~~~~~~l~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g  147 (293)
T COG2962          69 PKTLLMLALTALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG  147 (293)
T ss_pred             cHHHHHHHHHHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence            1224444444443 467899999999999999999999999999999999999999999999999999999998887665


Q ss_pred             C
Q 012208          418 S  418 (468)
Q Consensus       418 ~  418 (468)
                      +
T Consensus       148 ~  148 (293)
T COG2962         148 S  148 (293)
T ss_pred             C
Confidence            4

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.38  E-value=9.3e-06  Score=68.14  Aligned_cols=69  Identities=19%  Similarity=0.302  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHh
Q 012208          346 YTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQM  414 (468)
Q Consensus       346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~  414 (468)
                      ..++++.++++.++..++++.+.+.+-.+.++.++++.+++++++||++++.+++|.++|++|++++..
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            344567788999999999999999999999999999999999999999999999999999999987653

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.36  E-value=4.2e-06  Score=83.06  Aligned_cols=130  Identities=17%  Similarity=0.099  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHhcccc--c----c----hh--hHH---
Q 012208          124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWARDDV--K----T----RN--AGI---  186 (468)
Q Consensus       124 ~~g~ll~lla~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~--~----~----~~--~~l---  186 (468)
                      ..|.++.++++++|+...+..|...+  +.+|..++++....+.++++++........  .    .    ..  ...   
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            56999999999999999999998776  789999999999999888888765432111  0    0    00  011   


Q ss_pred             -HHHH-HHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhcc
Q 012208          187 -ELGL-WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (468)
Q Consensus       187 -~~gl-~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~  253 (468)
                       ..+. +....+.+++++++++++..++++..+.|+++.++++ +++|+++..+++|.+++++|+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence             1111 1122234666799999999999999999999999998 89999999999999999999988654

specificities overlap.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.32  E-value=2.5e-06  Score=80.50  Aligned_cols=249  Identities=14%  Similarity=0.083  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHhc-CchhhHHHHhhhhHHHHHHHHH-Hh
Q 012208          154 ASFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVEALGLLT-SDAGRASFISLFTVIVVPLFDG-ML  229 (468)
Q Consensus       154 ~~~~~~R~~~a~l~ll~~~~~--~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~-~~~~~a~ii~~~~Pl~~~ll~~-~l  229 (468)
                      -.++|.++++.+.--+++.-.  ..+++-.++.+...-...+..+.+-++|+++ .|...=.++-.-.++.++++++ ++
T Consensus        34 NLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~  113 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILL  113 (330)
T ss_pred             eehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhc
Confidence            456677776655544443311  0122223444444444444556677778875 4444444556778899999999 78


Q ss_pred             cCccchhHHHHHHHHHHhhhhhccCCC------------C--------CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 012208          230 GAIIPAHTWFGVLISALGVGMLECSGS------------P--------PSVGDFLNFLSAIFFGIHMLRTERISRSTKKE  289 (468)
Q Consensus       230 ~er~~~~~~~gi~l~l~Gv~li~~~~~------------~--------~~~G~llallaa~~~a~~~v~~r~~~~~~~~~  289 (468)
                      |.|.+.+|+.++++..+|+++.....+            +        ...|+.+...+-+.-|.-.++.+..-+++++ 
T Consensus       114 ~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK-  192 (330)
T KOG1583|consen  114 GKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK-  192 (330)
T ss_pred             cceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            999999999999999999998753211            0        1357766666666666666666666666554 


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHH-hhcC-----CCCCCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012208          290 NFLPLLGYEICVVALLSTIWVLV-GGWF-----DSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAM  363 (468)
Q Consensus       290 ~~~~~~~~~~~~~~l~~~~~~l~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al  363 (468)
                      ++-...+|.-.+..+..+...-- ..++     .+....+...        ..-|..|..++..    ...+|.| .+++
T Consensus       193 h~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g--------~~vP~~~~yLl~n----~L~Qy~C-ikgV  259 (330)
T KOG1583|consen  193 HWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLG--------FKVPSMWVYLLFN----VLTQYFC-IKGV  259 (330)
T ss_pred             ChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccC--------ccccHHHHHHHHH----HHHHHHH-HHhh
Confidence            66777777666655433321100 0000     0000011111        0012234444332    2334544 3443


Q ss_pred             ----ccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          364 ----RDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       364 ----~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                          ...++..++++..+.-.++.+++.+.|+.+++++.|+|.+++..|.++.....
T Consensus       260 y~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~  316 (330)
T KOG1583|consen  260 YILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW  316 (330)
T ss_pred             hhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                44566777888899999999999999999999999999999999998876543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.29  E-value=6.7e-06  Score=81.18  Aligned_cols=126  Identities=19%  Similarity=0.167  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHH---HHHHHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHH
Q 012208          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFV---MSAIPFLPFVFWARDDV--KTRNAGIELGLWVSLGYFV  198 (468)
Q Consensus       124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~---~a~l~ll~~~~~~~~~~--~~~~~~l~~gl~~~~~~~~  198 (468)
                      .+|+++.+++.+.++...+..|..  +.+|...++....   ++.+++..... +.++.  +.....++.|++.++++.+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Gi~~~ia~~~  227 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHI-LAKPLKKYAILLNILPGLMWGIGNFF  227 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999976  3788888555544   33333332221 11111  1122234468888889999


Q ss_pred             HHHHHh-cCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHH----HHHHHHHHhhhhhc
Q 012208          199 EALGLL-TSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTW----FGVLISALGVGMLE  252 (468)
Q Consensus       199 ~~~Al~-~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~----~gi~l~l~Gv~li~  252 (468)
                      |+.+.+ +.+++.+.++....|+...+++. ++||+.+++++    +|.++.+.|+.++.
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            999999 99999999999999999999999 79999999999    99999999998875

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.25  E-value=2.6e-05  Score=67.20  Aligned_cols=119  Identities=15%  Similarity=0.011  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHH-HHHHHHHHHHHHH
Q 012208          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGL-WVSLGYFVEALGL  203 (468)
Q Consensus       125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl-~~~~~~~~~~~Al  203 (468)
                      .++++++++.++-+..-++.|...++.+........  ...+..   .       .....++..|+ +.++++.++.+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~~~~~~---~-------~~p~~~i~lgl~~~~la~~~w~~aL   69 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--IAALLA---F-------GLALRAVLLGLAGYALSMLCWLKAL   69 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--HHHHHH---H-------hccHHHHHHHHHHHHHHHHHHHHHH
Confidence            367888888888888999999877665543322211  000000   0       01111344454 4577899999999


Q ss_pred             hcCchhhHHHHhhhhHHHHHHHHH---HhcCccchhHHHHHHHHHHhhhhhccCC
Q 012208          204 LTSDAGRASFISLFTVIVVPLFDG---MLGAIIPAHTWFGVLISALGVGMLECSG  255 (468)
Q Consensus       204 ~~~~~~~a~ii~~~~Pl~~~ll~~---~l~er~~~~~~~gi~l~l~Gv~li~~~~  255 (468)
                      ++.|++.+..+.+..+.++.+.++   ++||+++..+++|++++++|++++...+
T Consensus        70 ~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         70 RYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            999999999999999888888776   5899999999999999999999987654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.22  E-value=4.9e-05  Score=74.10  Aligned_cols=130  Identities=16%  Similarity=0.281  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHH-HHHHHHHHHHHHHHHHhcc---cccchhhHHHHHHHHH-HHHHH
Q 012208          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCA-VRFVMSAIPFLPFVFWARD---DVKTRNAGIELGLWVS-LGYFV  198 (468)
Q Consensus       124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~-~R~~~a~l~ll~~~~~~~~---~~~~~~~~l~~gl~~~-~~~~~  198 (468)
                      ..|.++.+++++.|+...+..|... ..++..... +.+........+.......   ....+......|++.. .++.+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999765 566666666 4433222222222222121   1222334455566655 68999


Q ss_pred             HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC
Q 012208          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (468)
Q Consensus       199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~  254 (468)
                      ++++++..+++.++.+..+.|++..++++ +++|+++..+++|+++.+.|+.++...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999888 789999999999999999999987644

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.14  E-value=6.6e-05  Score=76.15  Aligned_cols=129  Identities=10%  Similarity=0.124  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhc-------CCHHHHHHHHHHHHHHHHHHHHHHhccc--c----------cch--
Q 012208          124 IRSIFLLNVITIVYASDIPILKAAEEI-------MHPASFCAVRFVMSAIPFLPFVFWARDD--V----------KTR--  182 (468)
Q Consensus       124 ~~g~ll~lla~~~wg~~~~~~k~~~~~-------~~p~~~~~~R~~~a~l~ll~~~~~~~~~--~----------~~~--  182 (468)
                      ..|.+++++++++|+...+..|...++       .++..+..+-..++.++++|+.......  .          ...  
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            569999999999999999999986653       5677677767778888888776532110  0          010  


Q ss_pred             hhHHHHHHHHHHHHH----HHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208          183 NAGIELGLWVSLGYF----VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (468)
Q Consensus       183 ~~~l~~gl~~~~~~~----~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~  252 (468)
                      ...+...+..++.++    +.|++++++++...++...+.|+++.++++ +++|+++..+++|.+++++|+.+..
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            111111222233333    444699999999999999999999999999 8999999999999999999998754

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.13  E-value=9.4e-05  Score=65.39  Aligned_cols=125  Identities=18%  Similarity=0.159  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhh-------cCCHHHHHHHHHHHHHHHHHHHHHHhcccc-----------------cc
Q 012208          126 SIFLLNVITIVYASDIPILKAAEE-------IMHPASFCAVRFVMSAIPFLPFVFWARDDV-----------------KT  181 (468)
Q Consensus       126 g~ll~lla~~~wg~~~~~~k~~~~-------~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-----------------~~  181 (468)
                      |.++++.+.++.+...+..|...+       ..++.++.++-...+.+++++.....++..                 ..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            467888999999999999986432       578999999999999988888766532211                 11


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhh
Q 012208          182 RNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM  250 (468)
Q Consensus       182 ~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~l  250 (468)
                      ....+..|++.++.+...+..++++++...+++...--+++.+++. +++|+++..+++|+++++.|+++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            2223344666777888999999999999999999999999999999 79999999999999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=2.7e-06  Score=82.28  Aligned_cols=261  Identities=12%  Similarity=0.089  Sum_probs=156.0

Q ss_pred             cccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhHHHHHHH-HHHHHHH
Q 012208          121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKT-RNAGIELGLW-VSLGYFV  198 (468)
Q Consensus       121 ~~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~-~~~~l~~gl~-~~~~~~~  198 (468)
                      .+...|.++.+.+.++.|+++.+-|........   ..             .+...+..+. .-+.++.|++ +.+|-.+
T Consensus        17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~-------------~ra~~gg~~yl~~~~Ww~G~ltm~vGei~   80 (335)
T KOG2922|consen   17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SG-------------LRAGEGGYGYLKEPLWWAGMLTMIVGEIA   80 (335)
T ss_pred             cCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hc-------------ccccCCCcchhhhHHHHHHHHHHHHHhHh
Confidence            455678999999999999999999975542111   00             1111222222 2233444554 6789999


Q ss_pred             HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC--CCC------------cHHHH
Q 012208          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG--SPP------------SVGDF  263 (468)
Q Consensus       199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~--~~~------------~~G~l  263 (468)
                      -|.|+.+.|++..+.+..++.++.++++. ++||+++....+|.+++++|-.+++...  ...            ..+.+
T Consensus        81 NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fl  160 (335)
T KOG2922|consen   81 NFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFL  160 (335)
T ss_pred             hHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHH
Confidence            99999999999999999999999999998 8999999999999999999999876432  111            12211


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHH--HH---HHHHHHhhcCCCCCCCCCCCchhhhhccc
Q 012208          264 ---LNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVAL--LS---TIWVLVGGWFDSSQDFDQSPWTWTMLWDW  335 (468)
Q Consensus       264 ---lallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l--~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  335 (468)
                         ..++..++     ++.-.+..+....+++.....-.+.+.+  +.   +-.++-.......    ....        
T Consensus       161 iy~~~iil~~~-----il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~----ql~~--------  223 (335)
T KOG2922|consen  161 VYVIIIILIVL-----ILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN----QLFY--------  223 (335)
T ss_pred             HHHHHHHHHHH-----HHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc----cccc--------
Confidence               11111111     1111122222222444443322222210  00   0011111110011    0000        


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHHHhCCcc--chh----hHHHHHHHHHH
Q 012208          336 MVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWFLLGERW--STA----GWIGAALVLGG  408 (468)
Q Consensus       336 ~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~llgE~~--t~~----~~iG~~lIi~G  408 (468)
                        +..|..++.+..+ .+.+.--.++|++..+++.++++.| +-..++++-+.++|+|.-  +..    .+.|+..|+.|
T Consensus       224 --~~ty~~~l~~~~~-~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G  300 (335)
T KOG2922|consen  224 --PLTWIFLLVVATC-VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLG  300 (335)
T ss_pred             --HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhhe
Confidence              1125555444443 3555556689999999999988887 556677777888898753  333    46788899999


Q ss_pred             HHHHHhccC
Q 012208          409 SLLVQMYRS  417 (468)
Q Consensus       409 v~l~~~~~~  417 (468)
                      +++....++
T Consensus       301 ~flL~~~kd  309 (335)
T KOG2922|consen  301 IFLLHRTKD  309 (335)
T ss_pred             eeEeeeecc
Confidence            888754443

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=98.12  E-value=4.3e-07  Score=84.29  Aligned_cols=263  Identities=12%  Similarity=0.117  Sum_probs=172.1

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhccc--ccchhhHHHHHHHHHHHHHHHHHH
Q 012208          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDD--VKTRNAGIELGLWVSLGYFVEALG  202 (468)
Q Consensus       125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~--~~~~~~~l~~gl~~~~~~~~~~~A  202 (468)
                      ..+++.++-++.||+........-  -.|.+.+..-.+-+.++.+.+++...+.  ....--.++.|+++.++....+.|
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k~G--G~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka   79 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANKFG--GKPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKA   79 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeeecC--CChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhh
Confidence            357889999999999877664322  3566665554444444444444443221  222333456688889999999999


Q ss_pred             HhcCchhhHHHHh-hhhHHHHHHHHH-HhcCccchhH----HHHHHHHHHhhhhhccCCC---------CCcHHHHHHHH
Q 012208          203 LLTSDAGRASFIS-LFTVIVVPLFDG-MLGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNFL  267 (468)
Q Consensus       203 l~~~~~~~a~ii~-~~~Pl~~~ll~~-~l~er~~~~~----~~gi~l~l~Gv~li~~~~~---------~~~~G~llall  267 (468)
                      +++..++.+.++. .++-+-+.+++. ++||-.+..+    .+++++.+.|+.+-+..+.         ....|....+.
T Consensus        80 ~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~i  159 (288)
T COG4975          80 IQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLI  159 (288)
T ss_pred             eeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeee
Confidence            9999999999995 566667777777 6898777654    4577788888888765431         12478888889


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHH
Q 012208          268 SAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYT  347 (468)
Q Consensus       268 aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~l  347 (468)
                      +.++|..|.++.+...-  +..+...-.+.-++++++...    ..   ...  ......            .|. -+..
T Consensus       160 St~GYv~yvvl~~~f~v--~g~saiLPqAiGMv~~ali~~----~~---~~~--~~~~K~------------t~~-nii~  215 (288)
T COG4975         160 STLGYVGYVVLFQLFDV--DGLSAILPQAIGMVIGALILG----FF---KME--KRFNKY------------TWL-NIIP  215 (288)
T ss_pred             eccceeeeEeeeccccc--cchhhhhHHHHHHHHHHHHHh----hc---ccc--cchHHH------------HHH-HHhh
Confidence            99999999998776542  222333223333333332221    11   111  111111            122 2333


Q ss_pred             HHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhh----HHHHHHHHHHHHHHHh
Q 012208          348 GIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAG----WIGAALVLGGSLLVQM  414 (468)
Q Consensus       348 gv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~----~iG~~lIi~Gv~l~~~  414 (468)
                      |+. -.++...+..+-+..+.+..=.++-+..+++.+-+.++++|+=|..+    ++|.+++++|..+...
T Consensus       216 G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~  285 (288)
T COG4975         216 GLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             HHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence            443 45677777888888888777777788889999999999999988775    4688888888776544

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.92  E-value=9.1e-05  Score=62.72  Aligned_cols=71  Identities=14%  Similarity=0.156  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208          347 TGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS  417 (468)
Q Consensus       347 lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~  417 (468)
                      +.+++.++++.++.+++++.+.+.+=.+ ..+..+.+.++++++|||++++.+++|.++|++|++......+
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            3556667899999999999999887555 5689999999999999999999999999999999998866543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.87  E-value=0.00033  Score=65.72  Aligned_cols=126  Identities=16%  Similarity=0.115  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHH----HHHH-HHHHHH
Q 012208          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIEL----GLWV-SLGYFV  198 (468)
Q Consensus       124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~----gl~~-~~~~~~  198 (468)
                      ..|..+.+.+..+|+..-+..|-..+..+...-+..-+.+++++.+|+-.......-.....+..    |++. .+.+.+
T Consensus       147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsL  226 (292)
T COG5006         147 PVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSL  226 (292)
T ss_pred             HHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHH
Confidence            36899999999999999998887765667777788889999999998877654433333333333    3332 456789


Q ss_pred             HHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhh
Q 012208          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVG  249 (468)
Q Consensus       199 ~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~  249 (468)
                      -..+++.+|...-+++.++.|.+.++.++ +++|+++..||++++..+.+..
T Consensus       227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999 8999999999999988887765

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.78  E-value=0.00074  Score=67.55  Aligned_cols=77  Identities=14%  Similarity=0.211  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS  418 (468)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~  418 (468)
                      |+..+.++++- +.+..+.+.|+++++.+-++++..+..++++++++++++++.++.+++|+++.++|+.++...+..
T Consensus        79 ~w~y~lla~~D-v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~  155 (334)
T PF06027_consen   79 WWKYFLLALLD-VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL  155 (334)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence            44455567664 567778899999999999999999999999999999999999999999999999999988876543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.73  E-value=0.00039  Score=58.10  Aligned_cols=70  Identities=17%  Similarity=0.342  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          347 TGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       347 lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                      ..+++.++++.++..++++.+.+.+=.+ ..+..+...++++++|||++++.+++|+++|++|++..+...
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3556677889999999999999877444 668889999999999999999999999999999999987543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.72  E-value=3.9e-06  Score=78.85  Aligned_cols=137  Identities=18%  Similarity=0.279  Sum_probs=99.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhcccc
Q 012208          257 PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWM  336 (468)
Q Consensus       257 ~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  336 (468)
                      ..+.|.++.-++ .++....++.++....    ||..+....+++-.++..|..+....+...+. +...          
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~----~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~-g~R~----------   98 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN----DPMELASFRLLVRMLITYPCLIYYMQPVIGPE-GKRK----------   98 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhcc----ChhHhhhhhhhhehhhhheEEEEEeeeeecCC-CcEE----------
Confidence            346888888888 8888888888887765    67777777666666665555444332211111 1000          


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          337 VTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       337 ~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                          |  ++.=|+. +..+.++.++++++.+-+.++++..+.|+++++++|++++|+.|....+|..+.+.|++++.+..
T Consensus        99 ----~--LiLRg~m-G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen   99 ----W--LILRGFM-GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             ----E--EEeehhh-hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence                1  1222333 34566677899999999999999999999999999999999999999999999999998877543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.65  E-value=0.00093  Score=64.42  Aligned_cols=126  Identities=18%  Similarity=0.090  Sum_probs=89.2

Q ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHH
Q 012208          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVE  199 (468)
Q Consensus       122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~--~~~~~~~~~~~l~~gl~~~~~~~~~  199 (468)
                      +..++++.++++.+.+....++.|..  +++++...+-...-..+..+++...  +....+....-++-|+++..++.++
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~  212 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKAF--HVSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFY  212 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhc--CCChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHH
Confidence            34578999999999888878887763  3677666654433222222222221  2222233444577799999999999


Q ss_pred             HHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHH----HHHHHHHhhh
Q 012208          200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWF----GVLISALGVG  249 (468)
Q Consensus       200 ~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~----gi~l~l~Gv~  249 (468)
                      +.|.+....+.+-.+..+.+++..+.+. ++||+-+++++.    |+++.+.|.+
T Consensus       213 ~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  213 LISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             HHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999998 799999988765    4444444443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.62  E-value=0.00022  Score=59.49  Aligned_cols=109  Identities=19%  Similarity=0.212  Sum_probs=76.2

Q ss_pred             HHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 012208          131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR  210 (468)
Q Consensus       131 lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~  210 (468)
                      ++..++||.+.+++|....+.++..-.. |...-...++           ..+++++-=+++..+...|++.+...+.+.
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~Ll-----------~n~~y~ipf~lNq~GSv~f~~~L~~~dlSl   69 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKFLL-----------LNPKYIIPFLLNQSGSVLFFLLLGSADLSL   69 (113)
T ss_pred             eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence            3467899999999998766544333221 3222111111           111222223346778899999999999999


Q ss_pred             HHHHh-hhhHHHHHHHHHHhcCc-cchhHHHHHHHHHHhhhhh
Q 012208          211 ASFIS-LFTVIVVPLFDGMLGAI-IPAHTWFGVLISALGVGML  251 (468)
Q Consensus       211 a~ii~-~~~Pl~~~ll~~~l~er-~~~~~~~gi~l~l~Gv~li  251 (468)
                      +.++. ++.-++|++.+++++|+ .++..++|+++.+.|+.+.
T Consensus        70 avPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   70 AVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             eehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            99995 78888999999976655 5677899999999999875

Many members are annotated as potential transmembrane proteins.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.59  E-value=0.003  Score=55.13  Aligned_cols=131  Identities=18%  Similarity=0.196  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhh
Q 012208          261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP  340 (468)
Q Consensus       261 G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (468)
                      ..+++++++.+-++...+..++.+..+  +|+...+..+..+.+....+.+..... ........+              
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~~p--------------   64 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP-SLASLSSVP--------------   64 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhccCC--------------
Confidence            467889999999999999999988753  578888888888888877766665543 222222222              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHH-H---hCCccchhhHHHHHHHHHHHH
Q 012208          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWF-L---LGERWSTAGWIGAALVLGGSL  410 (468)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~-l---lgE~~t~~~~iG~~lIi~Gv~  410 (468)
                      |+.  ++|.+.+++...+....+++.+++....... -+.+.+++++.+ +   -++++++.+++|.+++++|++
T Consensus        65 ~w~--~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   65 WWA--YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             hHH--hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            222  3355555666667788999999988876665 566677788886 2   347899999999999999976

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.58  E-value=0.0021  Score=63.85  Aligned_cols=128  Identities=16%  Similarity=0.099  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHhhccCCC-CchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhhHHHHHHHHHH
Q 012208          272 FGIHMLRTERISRSTKKE-NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIF  350 (468)
Q Consensus       272 ~a~~~v~~r~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~  350 (468)
                      +..+.++.+++.++.... .+..+++.+.....+...+......    ....+..+              +...+..+++
T Consensus        12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~   73 (303)
T PF08449_consen   12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK----FPKSRKIP--------------LKKYAILSFL   73 (303)
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----ccCCCcCh--------------HHHHHHHHHH
Confidence            445667778777765543 4788888888888887776555443    11111111              2223344443


Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208          351 STGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS  418 (468)
Q Consensus       351 ~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~  418 (468)
                       ..++..+-+.++++++.....++....|+..++++++++|++.+..++++.+++.+|+++....+.+
T Consensus        74 -~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~  140 (303)
T PF08449_consen   74 -FFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS  140 (303)
T ss_pred             -HHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence             4666778889999999999999999999999999999999999999999999999999998876544

; GO: 0055085 transmembrane transport

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.58  E-value=0.0021  Score=53.48  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhh
Q 012208          184 AGIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML  251 (468)
Q Consensus       184 ~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li  251 (468)
                      ..+..-+....++++...+++++|.+.+-.+ ....-+.+.+.+. ++||++++.+++|+.+.+.|++++
T Consensus        37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            3444455567788999999999999999666 5677888888888 799999999999999999999875

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.00074  Score=55.41  Aligned_cols=69  Identities=23%  Similarity=0.325  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          348 GIFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       348 gv~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                      .+++..++|.+...++|+.+.+.+ ++......+.+.+.++++|||+.++.+++|.+++++|++..+...
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            444567788999999999998765 777889999999999999999999999999999999999877643

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.54  E-value=0.00045  Score=68.35  Aligned_cols=123  Identities=20%  Similarity=0.286  Sum_probs=89.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccc
Q 012208          256 SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDW  335 (468)
Q Consensus       256 ~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  335 (468)
                      .+...|..++++++++.+....+.|+...+.+. +...-.                          ....+.....    
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~--------------------------~~~~~~l~~~----   51 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAG--------------------------SGGRSYLRRP----   51 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccc--------------------------chhhHHHhhH----
Confidence            345689999999999999999999987665421 101000                          0000000000    


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208          336 MVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY  415 (468)
Q Consensus       336 ~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~  415 (468)
                          .|+    .|.+..+++..+.+.|+...+++.++++..+..++..+++.++++|+++...++|+++++.|..+....
T Consensus        52 ----~W~----~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   52 ----LWW----IGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             ----HHH----HHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence                022    234444556667788999999999999999999999999999999999999999999999999887665


Q ss_pred             cC
Q 012208          416 RS  417 (468)
Q Consensus       416 ~~  417 (468)
                      ..
T Consensus       124 ~~  125 (300)
T PF05653_consen  124 AP  125 (300)
T ss_pred             CC
Confidence            43

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.49  E-value=0.0011  Score=54.78  Aligned_cols=67  Identities=21%  Similarity=0.243  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208          349 IFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY  415 (468)
Q Consensus       349 v~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~  415 (468)
                      +++.++++.+...++|+.+.+.+ ++...+..+.+.+.++++|||++++.+++|+.+|++|++..+..
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~  103 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS  103 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            55567888899999999998765 66677899999999999999999999999999999999987643

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.43  E-value=0.0031  Score=53.43  Aligned_cols=70  Identities=14%  Similarity=0.224  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC
Q 012208          185 GIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (468)
Q Consensus       185 ~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~  254 (468)
                      .+...++.+++++++..+++++|.+.+-.+ ..+.-+.+.+++. +++|+++..+++|+.+.+.|++++-..
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            344455567889999999999999999877 4688888999998 899999999999999999999987543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.0037  Score=51.39  Aligned_cols=72  Identities=19%  Similarity=0.182  Sum_probs=60.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208          181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (468)
Q Consensus       181 ~~~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~  252 (468)
                      +..+.+..-++...++.++-.|++++|.+.+-.+ ...-.+.+.+.++ ++||+.+..+++++.+.++|++.+-
T Consensus        29 ~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          29 RLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence            4444455566677889999999999999999666 6788888999998 8999999999999999999998764

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.40  E-value=0.0016  Score=54.26  Aligned_cols=66  Identities=21%  Similarity=0.429  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 012208          348 GIFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQ  413 (468)
Q Consensus       348 gv~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~  413 (468)
                      .+++.++++.+...++|+.+.+.+ ++...+..+.+.+.++++|||++++.+++|+++|++|++..+
T Consensus        41 ~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         41 SLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            345567788899999999998776 666678889999999999999999999999999999998764

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.37  E-value=0.0046  Score=51.64  Aligned_cols=69  Identities=16%  Similarity=0.223  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC
Q 012208          186 IELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (468)
Q Consensus       186 l~~gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~  254 (468)
                      +..-++.+.+++++..++++.|.+.+-.+ ..+.-+.+.++++ ++||++++.+++|+.+.+.|++++-..
T Consensus        34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            33344566788889999999999999777 5678888899998 899999999999999999999998543

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.36  E-value=0.0026  Score=52.62  Aligned_cols=70  Identities=11%  Similarity=0.069  Sum_probs=58.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208          183 NAGIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (468)
Q Consensus       183 ~~~l~~gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~  252 (468)
                      ...+..-++...++++...+++++|.+.+-.+ ....-+.+.+++. ++||++++.+++|+.+.+.|++.+-
T Consensus        30 ~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         30 TPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            33344455567888999999999999999666 5688888889998 8999999999999999999999864

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.28  E-value=0.011  Score=51.45  Aligned_cols=124  Identities=12%  Similarity=0.057  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHhcc-c----ccchhhHHHHHHHHHHHHHHHH
Q 012208          127 IFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARD-D----VKTRNAGIELGLWVSLGYFVEA  200 (468)
Q Consensus       127 ~ll~lla~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~-~----~~~~~~~l~~gl~~~~~~~~~~  200 (468)
                      .++.+++..+-+....++-.+.+..+ |+.-.++.+..+.+.+..+....++ +    ++..+|.+.-|+++.....+..
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~   82 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNI   82 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHH
Confidence            45566666777777777776666666 9999999999999998877776554 2    1234455566888888889999


Q ss_pred             HHHhcCchhhHHHHhhhhHH-HHHHHHHH-----hcCccchhHHHHHHHHHHhhhh
Q 012208          201 LGLLTSDAGRASFISLFTVI-VVPLFDGM-----LGAIIPAHTWFGVLISALGVGM  250 (468)
Q Consensus       201 ~Al~~~~~~~a~ii~~~~Pl-~~~ll~~~-----l~er~~~~~~~gi~l~l~Gv~l  250 (468)
                      +.+..++++.+..+....=+ ...++..|     -|+++++.+.+|+++.+.|+++
T Consensus        83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            99999999998887655444 44444453     3688999999999999999875

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.16  E-value=0.0029  Score=63.43  Aligned_cols=144  Identities=11%  Similarity=-0.038  Sum_probs=88.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHH--HHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccc
Q 012208          258 PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYE--ICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDW  335 (468)
Q Consensus       258 ~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  335 (468)
                      ...|+++.+++++|++.+++-.|+. ++.+    .+.. |-  .++.-++............-.......          
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~----wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~----------   68 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKV-KKWS----WETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSF----------   68 (345)
T ss_pred             hHHHHHHHHHHHHHhhccccccccc-CCCc----hhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc----------
Confidence            4579999999999999999999984 3321    2222 32  111111111000111100000000000          


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHHHhCCcc---c----hhhHHHHHHHHH
Q 012208          336 MVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWFLLGERW---S----TAGWIGAALVLG  407 (468)
Q Consensus       336 ~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~llgE~~---t----~~~~iG~~lIi~  407 (468)
                       ++..+...+. +.+.-.+++..+..++++.+.++...+.. ++.+++.+++.+++||..   +    ...++|.+++++
T Consensus        69 -~~~~~~~~~l-~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~lili  146 (345)
T PRK13499         69 -SGSTLLPVFL-FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALI  146 (345)
T ss_pred             -CHHHHHHHHH-HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence             1112333333 33345678999999999999998876665 889999999999999765   2    235789999999


Q ss_pred             HHHHHHhccCCC
Q 012208          408 GSLLVQMYRSSS  419 (468)
Q Consensus       408 Gv~l~~~~~~~~  419 (468)
                      |+++..+..+++
T Consensus       147 Gi~l~s~Ag~~k  158 (345)
T PRK13499        147 GVAIVGRAGQLK  158 (345)
T ss_pred             HHHHHHHhhhhc
Confidence            999999855443

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.06  E-value=0.027  Score=49.40  Aligned_cols=137  Identities=18%  Similarity=0.173  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchh
Q 012208          260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTF  339 (468)
Q Consensus       260 ~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (468)
                      ...+++++++++-.+..-+..++.+..+  +|+......++++.+.+..+.+..............+             
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~--spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~p-------------   69 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLG--SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAP-------------   69 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCc-------------
Confidence            4567889999999999999999988764  6788888888888887777766643322222112211             


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCChh-HHHHHhhhHHHHHHHHHHHHhC----CccchhhHHHHHHHHHHHHHHHh
Q 012208          340 PWVPALYTGIFSTGICLWIEIAAMRDVSAT-ETAIIYGLEPLWGAGFAWFLLG----ERWSTAGWIGAALVLGGSLLVQM  414 (468)
Q Consensus       340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~-~~s~~~~l~pv~a~l~~~~llg----E~~t~~~~iG~~lIi~Gv~l~~~  414 (468)
                       |+.  +.|.+..++-.+.-.....+.+++ .......-+.+.+++++.+=+.    .+++...++|++++++|+++...
T Consensus        70 -wW~--~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          70 -WWA--WIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             -hHH--HHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence             222  223333333333334566666654 4556666788888888877543    57899999999999999665554

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=97.00  E-value=0.44  Score=47.36  Aligned_cols=279  Identities=12%  Similarity=0.020  Sum_probs=158.7

Q ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHH----h-------cccccchhhHHHHHH
Q 012208          123 KIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFW----A-------RDDVKTRNAGIELGL  190 (468)
Q Consensus       123 ~~~g~ll~lla~~~wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~----~-------~~~~~~~~~~l~~gl  190 (468)
                      -..|+++..++.++-|+.++-.|...+ ....++++  ...++.+++ |+..-    +       .-+.....+..+.|+
T Consensus         5 ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv--~gi~swli~-P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    5 IILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV--QGIFSWLIV-PWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH--HHHHHHHHH-HHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            467899999999999998888887543 12233333  223333322 22221    1       112234455567789


Q ss_pred             HHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHHHh--------cCccchhHHHHHHHHHHhhhhhccCC------
Q 012208          191 WVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGML--------GAIIPAHTWFGVLISALGVGMLECSG------  255 (468)
Q Consensus       191 ~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~~l--------~er~~~~~~~gi~l~l~Gv~li~~~~------  255 (468)
                      +.+++...|=.+++|+..+...-| ..+.-++..++-.++        .++-....++|++++++|+.++...+      
T Consensus        82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~  161 (344)
T PF06379_consen   82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKE  161 (344)
T ss_pred             HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhh
Confidence            999999999999999988876544 455556665554432        23334567889999999999986432      


Q ss_pred             -------CCCcHHHHHHHHHHHHHHHHHHHHHHHh------hccCCCCchhH----HHHHHHHHHHHHHHHHHHhhcC-C
Q 012208          256 -------SPPSVGDFLNFLSAIFFGIHMLRTERIS------RSTKKENFLPL----LGYEICVVALLSTIWVLVGGWF-D  317 (468)
Q Consensus       256 -------~~~~~G~llallaa~~~a~~~v~~r~~~------~~~~~~~~~~~----~~~~~~~~~l~~~~~~l~~~~~-~  317 (468)
                             .....|.++++++++.-++.++-...-.      ... ..+++..    ....+..+.+.-+...+..... .
T Consensus       162 ~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~-G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k  240 (344)
T PF06379_consen  162 LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAA-GVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNK  240 (344)
T ss_pred             hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHc-CCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcC
Confidence                   1235899999999999888887644211      111 1222222    1112233334444444332211 1


Q ss_pred             CC---CCCCCCCchhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhccCC----hhHHHHHhhhHHHHHHHHHHHHh
Q 012208          318 SS---QDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVS----ATETAIIYGLEPLWGAGFAWFLL  390 (468)
Q Consensus       318 ~~---~~~~~~~~~~~~~~~~~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~----a~~~s~~~~l~pv~a~l~~~~ll  390 (468)
                      ..   .+.......+.        ......+ ++.+-=..++++|-++-.+.+    ..--.+.+.+..+++-+++. ++
T Consensus       241 ~~s~~~d~~~~~~~~~--------~N~~~~a-LaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl-~l  310 (344)
T PF06379_consen  241 NWSWKGDYSVAKPPLL--------KNYLFCA-LAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL-IL  310 (344)
T ss_pred             CCccccccccccchhH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH-HH
Confidence            11   01110000000        0111111 122222346666666666666    34556777888889999996 56


Q ss_pred             CCc------cchhhHHHHHHHHHHHHHHHhc
Q 012208          391 GER------WSTAGWIGAALVLGGSLLVQMY  415 (468)
Q Consensus       391 gE~------~t~~~~iG~~lIi~Gv~l~~~~  415 (468)
                      +|.      .-..-++|++++++++.++-+.
T Consensus       311 kEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G  341 (344)
T PF06379_consen  311 KEWKGASKKTIRVLVLGIAVLILSVVIVGYG  341 (344)
T ss_pred             HHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence            663      2344578999999988876543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.86  E-value=0.004  Score=50.46  Aligned_cols=58  Identities=21%  Similarity=0.414  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHH
Q 012208          348 GIFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALV  405 (468)
Q Consensus       348 gv~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lI  405 (468)
                      .+.+.++++.++.+++++.+.+.+ .+...+..+...+.+.+++||++++.+++|..+|
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            444667888999999999999888 5556699999999999999999999999999886

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.85  E-value=0.0037  Score=59.95  Aligned_cols=133  Identities=17%  Similarity=0.227  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchhh
Q 012208          261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP  340 (468)
Q Consensus       261 G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (468)
                      |.+.+++|+++|+...+=.|+....    |++....++.....+......+....    +...    +            
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g----Dg~~fQw~~~~~i~~~g~~v~~~~~~----p~f~----p------------   56 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG----DGFFFQWVMCSGIFLVGLVVNLILGF----PPFY----P------------   56 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC----CcHHHHHHHHHHHHHHHHHHHHhcCC----Ccce----e------------
Confidence            6778899999999999988877644    66666555555555555544443221    1110    0            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHH-HhCCcc-----chhhHHHHHHHHHHHHHHH
Q 012208          341 WVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWF-LLGERW-----STAGWIGAALVLGGSLLVQ  413 (468)
Q Consensus       341 ~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~-llgE~~-----t~~~~iG~~lIi~Gv~l~~  413 (468)
                         +..+|...-+.+..+-.-.++.++-+..-.+-. .+.+.+-+.+-+ +||+.+     .+..++|++++++|..+..
T Consensus        57 ---~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~  133 (254)
T PF07857_consen   57 ---WAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS  133 (254)
T ss_pred             ---HHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence               112233333445555556777777666544433 466666666654 565432     4668999999999999888


Q ss_pred             hccCCCC
Q 012208          414 MYRSSSP  420 (468)
Q Consensus       414 ~~~~~~~  420 (468)
                      .-|...+
T Consensus       134 fik~~~~  140 (254)
T PF07857_consen  134 FIKSEEK  140 (254)
T ss_pred             eecCCCC
Confidence            7665543

The region concerned is approximately 280 residues long.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.72  E-value=0.0081  Score=57.72  Aligned_cols=67  Identities=24%  Similarity=0.344  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccCC
Q 012208          352 TGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRSS  418 (468)
Q Consensus       352 ~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~~  418 (468)
                      ..++..+.+.++++.+|+...++..+..+++.++.+++++.+.+..||++..++++|+.+.......
T Consensus        27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            5678888899999999999999999999999999999999999999999999999999988765543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.45  E-value=0.034  Score=44.97  Aligned_cols=56  Identities=16%  Similarity=0.282  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHH
Q 012208          189 GLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLIS  244 (468)
Q Consensus       189 gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~  244 (468)
                      ..+.+.+++++..+++++|.+.+-.+ ..+..+.+.+++. ++||+++..+++|+.+.
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            33567788999999999999999666 5688899999998 89999999999998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.37  E-value=0.016  Score=48.42  Aligned_cols=64  Identities=22%  Similarity=0.261  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHhccCChhHHHHHh-hhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHH
Q 012208          348 GIFSTGICLWIEIAAMRDVSATETAIIY-GLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLL  411 (468)
Q Consensus       348 gv~~~~~~~~l~~~al~~~~a~~~s~~~-~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l  411 (468)
                      ..+....+-..|++.+++.+-+.+.++. .+.-+++++.++++.+|..+...++|+++|+.|+.+
T Consensus        47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            4444556677888999999999999885 899999999998888888888899999999999865

Many members are annotated as potential transmembrane proteins.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.30  E-value=0.0013  Score=61.55  Aligned_cols=133  Identities=11%  Similarity=0.017  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccchh
Q 012208          260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTF  339 (468)
Q Consensus       260 ~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (468)
                      ...+++|+-++.|+.--....+...     .|........+.+.++++...++..  +...   .               
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k~GG-----~p~qQ~lGtT~GALifaiiv~~~~~--p~~T---~---------------   56 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANKFGG-----KPYQQTLGTTLGALIFAIIVFLFVS--PELT---L---------------   56 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeeecCC-----ChhHhhhhccHHHHHHHHHHheeec--Cccc---h---------------
Confidence            3578899999999988777665544     3444443334444444433333311  1110   0               


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhh-hHHHHHHHHHHHHhCCccchhhH----HHHHHHHHHHHHHHh
Q 012208          340 PWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYG-LEPLWGAGFAWFLLGERWSTAGW----IGAALVLGGSLLVQM  414 (468)
Q Consensus       340 ~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~-l~pv~a~l~~~~llgE~~t~~~~----iG~~lIi~Gv~l~~~  414 (468)
                      ....+-.++.+.=.+++...+++++..+.+++.+++. ++.+-+.+++.++|||+.+..+.    +..++++.|+++..+
T Consensus        57 ~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~  136 (288)
T COG4975          57 TIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSK  136 (288)
T ss_pred             hhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeee
Confidence            0112222223333458899999999999999998876 88888999999999999998874    456777788776665


Q ss_pred             ccC
Q 012208          415 YRS  417 (468)
Q Consensus       415 ~~~  417 (468)
                      .++
T Consensus       137 ~~~  139 (288)
T COG4975         137 QDR  139 (288)
T ss_pred             ecc
Confidence            443

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.22  E-value=0.08  Score=50.91  Aligned_cols=159  Identities=13%  Similarity=0.043  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHhc
Q 012208          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLT  205 (468)
Q Consensus       126 g~ll~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~~~~~~~~~Al~~  205 (468)
                      |++..+++++++|++++-.|.... -+++.+.++-.....+.-+++.. -+..++...+.++-|.+++.++.+-.-.++.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~-gDg~~fQw~~~~~i~~~g~~v~~-~~~~p~f~p~amlgG~lW~~gN~~~vpii~~   78 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDT-GDGFFFQWVMCSGIFLVGLVVNL-ILGFPPFYPWAMLGGALWATGNILVVPIIKT   78 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccC-CCcHHHHHHHHHHHHHHHHHHHH-hcCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence            456788999999999999996543 46665555544333333333332 2344556677788889999999999999999


Q ss_pred             CchhhHHHHhhhhHHHHHHH-HH--Hhc---Cc--cchhHHHHHHHHHHhhhhhccCC----------------------
Q 012208          206 SDAGRASFISLFTVIVVPLF-DG--MLG---AI--IPAHTWFGVLISALGVGMLECSG----------------------  255 (468)
Q Consensus       206 ~~~~~a~ii~~~~Pl~~~ll-~~--~l~---er--~~~~~~~gi~l~l~Gv~li~~~~----------------------  255 (468)
                      +..+....|-...-+++--. +.  +++   |.  -+...++|++++++|..+....+                      
T Consensus        79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~  158 (254)
T PF07857_consen   79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIE  158 (254)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccc
Confidence            99999999976654444433 33  343   22  23467889999999988764210                      


Q ss_pred             --CC------------------CcHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012208          256 --SP------------------PSVGDFLNFLSAIFFGIHMLRTERISRST  286 (468)
Q Consensus       256 --~~------------------~~~G~llallaa~~~a~~~v~~r~~~~~~  286 (468)
                        ++                  ...|..+++++++.|+...+=..++..+.
T Consensus       159 ~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~  209 (254)
T PF07857_consen  159 IEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP  209 (254)
T ss_pred             cccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence              00                  13699999999999999887777666553

The region concerned is approximately 280 residues long.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.68  E-value=0.097  Score=50.84  Aligned_cols=129  Identities=12%  Similarity=0.063  Sum_probs=103.0

Q ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHh----------cccccchhhHHHHH
Q 012208          122 KKIRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWA----------RDDVKTRNAGIELG  189 (468)
Q Consensus       122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~----------~~~~~~~~~~l~~g  189 (468)
                      +...|++++....++=|+....-+.+.+  .++++.+++.--++..+.-.......          +..++..++.++..
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s  248 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS  248 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence            4567888888888888888888876554  47899988888777777766554433          23455677888999


Q ss_pred             HHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhh
Q 012208          190 LWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM  250 (468)
Q Consensus       190 l~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~l  250 (468)
                      .++.+|+.+.|+-++.-.+-.-+.|+-+-=++..+++. .++.+++..+|+|+++.+.|+.+
T Consensus       249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            99999999999999876666666777777888888888 69999999999999999999875

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.48  E-value=0.72  Score=40.55  Aligned_cols=128  Identities=11%  Similarity=0.060  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHhcccc------cchhhHHHHHHHHHHHHH
Q 012208          125 RSIFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARDDV------KTRNAGIELGLWVSLGYF  197 (468)
Q Consensus       125 ~g~ll~lla~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~------~~~~~~l~~gl~~~~~~~  197 (468)
                      ..++..+++..+-.....+.-.+.+..+ |+.-.++.+..+.++++.+...+.+.+      +.++|.+.-|+++.+...
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt   84 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVT   84 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhh
Confidence            4455666666666666666665555554 999999999998888877766643221      224444555666655555


Q ss_pred             HHHHHHhcCchhhHHHH-hhhhHHHHHHHHHH--h---cCccchhHHHHHHHHHHhhhhhc
Q 012208          198 VEALGLLTSDAGRASFI-SLFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGMLE  252 (468)
Q Consensus       198 ~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~~--l---~er~~~~~~~gi~l~l~Gv~li~  252 (468)
                      ........+.++....+ ..-+-+...++..|  +   +++++..+++|+++.++|+.++.
T Consensus        85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238          85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR  145 (150)
T ss_pred             hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence            55555555555555444 34444555555543  3   47899999999999999965554

>TIGR00803 nst UDP-galactose transporter

Probab=94.78  E-value=0.21  Score=47.09  Aligned_cols=127  Identities=11%  Similarity=0.102  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhcCC-HHHHHHHHH-HHHHHHHHHHHHHhcc------c--ccchhhHHHHHHHHH
Q 012208          124 IRSIFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRF-VMSAIPFLPFVFWARD------D--VKTRNAGIELGLWVS  193 (468)
Q Consensus       124 ~~g~ll~lla~~~wg~~~~~~k~~~~~~~-p~~~~~~R~-~~a~l~ll~~~~~~~~------~--~~~~~~~l~~gl~~~  193 (468)
                      ..+...++.+.++-+...+..+...+.-+ .+..-.+.. ..+.+...........      +  .......+...+...
T Consensus        84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  163 (222)
T TIGR00803        84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNV  163 (222)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHH
Confidence            45666677777777777777776544321 111111111 1111111111111111      1  111223444556667


Q ss_pred             HHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhh
Q 012208          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM  250 (468)
Q Consensus       194 ~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~l  250 (468)
                      .+..+..+.+++.+....++...+.++++.+++. +++++++..+++|+.+.+.|+.+
T Consensus       164 ~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       164 GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            7778888899999999999999999999999998 78999999999999999998764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=94.52  E-value=1.9  Score=43.00  Aligned_cols=66  Identities=23%  Similarity=0.344  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          351 STGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       351 ~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                      ...+...+++.++.+.+|+...+...+..+.+.++..++++++.+..||...++.+.|+.++....
T Consensus       101 iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~  166 (345)
T KOG2234|consen  101 IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS  166 (345)
T ss_pred             HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence            356677788999999999999999999999999999999999999999999999999999998433

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=94.17  E-value=0.4  Score=39.07  Aligned_cols=110  Identities=13%  Similarity=0.115  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhcCC------HHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Q 012208          129 LLNVITIVYASDIPILKAAEEIMH------PASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALG  202 (468)
Q Consensus       129 l~lla~~~wg~~~~~~k~~~~~~~------p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~l~~gl~~~~~~~~~~~A  202 (468)
                      -++...++||...+++|....+.+      .....++|-......              .+.++.--+++-.+..+||.-
T Consensus         7 ~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l--------------~w~Y~iPFllNqcgSaly~~t   72 (125)
T KOG4831|consen    7 KLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFL--------------NWEYLIPFLLNQCGSALYYLT   72 (125)
T ss_pred             HHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHhhHHHHHHH
Confidence            356678899999999997554322      222233332221111              111222233456678899999


Q ss_pred             HhcCchhhHHHHh-hhhHHHHHHHHHHhcCccch-hHHHHHHHHHHhhhhhc
Q 012208          203 LLTSDAGRASFIS-LFTVIVVPLFDGMLGAIIPA-HTWFGVLISALGVGMLE  252 (468)
Q Consensus       203 l~~~~~~~a~ii~-~~~Pl~~~ll~~~l~er~~~-~~~~gi~l~l~Gv~li~  252 (468)
                      ++..|.+.++.+. ++.-.|+.+.+..++|+... +.++|..+.+.|+.+..
T Consensus        73 La~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   73 LASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            9999999999885 56777888888888887665 56789999999988753

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.08  E-value=0.43  Score=44.76  Aligned_cols=128  Identities=9%  Similarity=-0.002  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHH----------HhcccccchhhHHHHHHHH
Q 012208          125 RSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVF----------WARDDVKTRNAGIELGLWV  192 (468)
Q Consensus       125 ~g~ll~lla~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~ll~~~~----------~~~~~~~~~~~~l~~gl~~  192 (468)
                      .|-++++++..+=|...........  .-+...+++.-.+...+.+..-+.          +-.+.+..+..+.+++++.
T Consensus       172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s  251 (337)
T KOG1580|consen  172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS  251 (337)
T ss_pred             hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4666777777777777766543221  122223333333333333322222          2233444566677889999


Q ss_pred             HHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (468)
Q Consensus       193 ~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~  252 (468)
                      .+|..+.|.-+.+-++-..++++.+--+|+.+.+. +++.+++.++|+|.++.+.|...=.
T Consensus       252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            99999999999988888899999999999999999 7899999999999999999987644

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.83  E-value=0.024  Score=55.37  Aligned_cols=126  Identities=18%  Similarity=0.189  Sum_probs=92.0

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccc
Q 012208          256 SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDW  335 (468)
Q Consensus       256 ~~~~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  335 (468)
                      .++..|.++++.+.++.+...++.|+..++...                     ..........+-.  ..         
T Consensus        17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---------------------~~~ra~~gg~~yl--~~---------   64 (335)
T KOG2922|consen   17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---------------------SGLRAGEGGYGYL--KE---------   64 (335)
T ss_pred             cCceeeeeehhhccEEEeeehhhhHHHHHHHhh---------------------hcccccCCCcchh--hh---------
Confidence            356789999999999999999988887766310                     0000000000000  00         


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208          336 MVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY  415 (468)
Q Consensus       336 ~~~~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~  415 (468)
                             ...+.|.+..++|-.+.+.|....+++.++++..+..+++.+++.++++|++++...+|+++.++|..++..+
T Consensus        65 -------~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   65 -------PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             -------HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence                   0113466666677777778888899999999999999999999999999999999999999999998888876


Q ss_pred             cCCCC
Q 012208          416 RSSSP  420 (468)
Q Consensus       416 ~~~~~  420 (468)
                      ..+++
T Consensus       138 aP~e~  142 (335)
T KOG2922|consen  138 APKEQ  142 (335)
T ss_pred             cCccc
Confidence            65443

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=93.56  E-value=0.021  Score=55.35  Aligned_cols=120  Identities=10%  Similarity=0.050  Sum_probs=76.6

Q ss_pred             HHHHHHHhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhc---c-----ccc-----------chhhHHHHHHH
Q 012208          131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---D-----DVK-----------TRNAGIELGLW  191 (468)
Q Consensus       131 lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~---~-----~~~-----------~~~~~l~~gl~  191 (468)
                      +++.++||+.....|++.+.--..+..++-+.++.++..+++...-   +     .+.           .....++-|+.
T Consensus         2 ~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGvv   81 (336)
T PF07168_consen    2 VITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGVV   81 (336)
T ss_pred             eeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhHh
Confidence            5678999999999999887544445677888887766655554421   1     111           11123344666


Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHh-hhhHHHHHHHHHHhcCccchhH--HHHHHHHHHhhhh
Q 012208          192 VSLGYFVEALGLLTSDAGRASFIS-LFTVIVVPLFDGMLGAIIPAHT--WFGVLISALGVGM  250 (468)
Q Consensus       192 ~~~~~~~~~~Al~~~~~~~a~ii~-~~~Pl~~~ll~~~l~er~~~~~--~~gi~l~l~Gv~l  250 (468)
                      ..+++++.-+|+.+...+.+-++. .+.-++..++-+|+..|.++..  ..|+.+.++.+++
T Consensus        82 fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~l  143 (336)
T PF07168_consen   82 FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIIL  143 (336)
T ss_pred             hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHH
Confidence            778889999999998888877764 4444455555567777776543  3355555555544

Transport is dependent on glucose and a proton gradient [].

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=93.11  E-value=0.29  Score=48.65  Aligned_cols=131  Identities=15%  Similarity=0.079  Sum_probs=95.0

Q ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHhh----cCCHHHHHHHHHHHHHHHHH-HHHHHhccccc------chhh----HH
Q 012208          122 KKIRSIFLLNVITIVYASDIPILKAAEE----IMHPASFCAVRFVMSAIPFL-PFVFWARDDVK------TRNA----GI  186 (468)
Q Consensus       122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~----~~~p~~~~~~R~~~a~l~ll-~~~~~~~~~~~------~~~~----~l  186 (468)
                      -...|......+.+..+.-.++.|....    .++++.+.....-++.+.++ |+.....+...      .+..    .+
T Consensus       160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (316)
T KOG1441|consen  160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILL  239 (316)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHH
Confidence            4568999999999999999999997653    48899998888888888888 77665433221      1111    12


Q ss_pred             HHHHHHHHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhc
Q 012208          187 ELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (468)
Q Consensus       187 ~~gl~~~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~  252 (468)
                      ...++.++-+...|..+..+++-.-++...+==+++.+.++ +++++++....+|.+++++|+++-.
T Consensus       240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence            22344455556667777777777766665555555666776 7889999999999999999998754

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=92.26  E-value=2  Score=43.24  Aligned_cols=134  Identities=13%  Similarity=0.099  Sum_probs=90.5

Q ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHhhc----CCHHHHHHHHHHHHHHHHHHHHH----Hhcccccc-----hhhHHHH
Q 012208          122 KKIRSIFLLNVITIVYASDIPILKAAEEI----MHPASFCAVRFVMSAIPFLPFVF----WARDDVKT-----RNAGIEL  188 (468)
Q Consensus       122 ~~~~g~ll~lla~~~wg~~~~~~k~~~~~----~~p~~~~~~R~~~a~l~ll~~~~----~~~~~~~~-----~~~~l~~  188 (468)
                      +...|-++.+++++++|...++.|.-.++    ++--.+..+--++..++++|.+.    ...++...     ..-.+..
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            45789999999999999999999974432    33222222222333444443222    22222211     1123444


Q ss_pred             HHHH-HHHHHHHHHHHhcCchhhHHHHhhhhHHHHHHHHHHh-cCccchhHHHHHHHHHHhhhhhccCC
Q 012208          189 GLWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSG  255 (468)
Q Consensus       189 gl~~-~~~~~~~~~Al~~~~~~~a~ii~~~~Pl~~~ll~~~l-~er~~~~~~~gi~l~l~Gv~li~~~~  255 (468)
                      ++.+ +++-+++..|+-.+++-.+++-..++..+.++.-.++ +..+++..++|...+++|-+++...+
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            5554 5788999999999998888888777777777777755 67899999999999999999987654

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=90.59  E-value=0.17  Score=46.08  Aligned_cols=63  Identities=19%  Similarity=0.394  Sum_probs=57.0

Q ss_pred             HHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhccC
Q 012208          355 CLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYRS  417 (468)
Q Consensus       355 ~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~~  417 (468)
                      +..+|..+++.++|+.++.+..-+--|..+++++++|+++....++..++.+.|++++.+.+.
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN  128 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN  128 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence            345788999999999999999999999999999999999999999999999999888776543

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=90.35  E-value=1.5  Score=43.74  Aligned_cols=145  Identities=14%  Similarity=0.100  Sum_probs=80.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhhhccccch
Q 012208          259 SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVT  338 (468)
Q Consensus       259 ~~G~llallaa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (468)
                      ..|+++..+++++.+.+++=.||..+-. -++...+   +.++ ..+..|+.......++..+.-..          .|.
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkvk~Ws-WEs~Wlv---~gi~-swli~P~~~a~l~ip~~~~i~~~----------~~~   70 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKVKGWS-WESYWLV---QGIF-SWLIVPWLWALLAIPDFFSIYSA----------TPA   70 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhcCCcc-HHHHHHH---HHHH-HHHHHHHHHHHHhCCcHHHHHHh----------CCh
Confidence            5799999999999999999999875531 1111111   1222 22233333222211111110000          001


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCChhHH-HHHhhhHHHHHHHHHHHHhCC-------ccchhhHHHHHHHHHHHH
Q 012208          339 FPWVPALYTGIFSTGICLWIEIAAMRDVSATET-AIIYGLEPLWGAGFAWFLLGE-------RWSTAGWIGAALVLGGSL  410 (468)
Q Consensus       339 ~~~~~ll~lgv~~~~~~~~l~~~al~~~~a~~~-s~~~~l~pv~a~l~~~~llgE-------~~t~~~~iG~~lIi~Gv~  410 (468)
                      ..+......|++ =+++-..|-.++|+.+.+.. ++..-+.-+++.++-.++.|+       +-....++|.++.++|+.
T Consensus        71 ~~l~~~~l~G~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIa  149 (344)
T PF06379_consen   71 STLFWTFLFGVL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIA  149 (344)
T ss_pred             hHHHHHHHHHHH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHH
Confidence            123333333443 34555666788999887665 344446666666665555442       223457889999999999


Q ss_pred             HHHhccCCC
Q 012208          411 LVQMYRSSS  419 (468)
Q Consensus       411 l~~~~~~~~  419 (468)
                      +..+....+
T Consensus       150 i~g~AG~~K  158 (344)
T PF06379_consen  150 ICGKAGSMK  158 (344)
T ss_pred             HHhHHHHhh
Confidence            988776544

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PRK02237 hypothetical protein; Provisional

Probab=88.49  E-value=3.4  Score=34.02  Aligned_cols=46  Identities=26%  Similarity=0.305  Sum_probs=40.4

Q ss_pred             HHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          371 TAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       371 ~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                      .+...-...+.++++++.+-|++|+...++|.++.++|+.++.+..
T Consensus        62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            3667778889999999999999999999999999999998876644

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.11  E-value=24  Score=34.93  Aligned_cols=57  Identities=14%  Similarity=0.161  Sum_probs=52.0

Q ss_pred             HHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          360 IAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       360 ~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                      .+++++.+....+++....|++..+.+.+++|-+++...+.....+++|........
T Consensus        95 ~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d  151 (314)
T KOG1444|consen   95 SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD  151 (314)
T ss_pred             cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc
Confidence            478999999999999999999999999999999999999999999999987766544

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=83.28  E-value=2.5  Score=40.93  Aligned_cols=64  Identities=16%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhc
Q 012208          352 TGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMY  415 (468)
Q Consensus       352 ~~~~~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~  415 (468)
                      -..+-.+.+.++..++++...+......+|.-+++.-+++..++..+|+|+..+.+|++.+-..
T Consensus        96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            3455667788999999999999999999999999999999999999999999999998887654

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=81.90  E-value=2.9  Score=34.31  Aligned_cols=45  Identities=27%  Similarity=0.382  Sum_probs=39.7

Q ss_pred             HHHhhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          372 AIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       372 s~~~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                      +...-...+.++++++.+-|++|+...++|.++.++|+.++.+..
T Consensus        61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            556667788999999999999999999999999999998887654

; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	468
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.86
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.57
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.49
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.24

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.86  E-value=4.7e-09  Score=90.03  Aligned_cols=71  Identities=17%  Similarity=0.337  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          346 YTGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                      .+++++++++|.+|.+++++.+++.+..+ ..+.|+++++++++++||++++.+++|+++|++|+++....+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            46778889999999999999999999998 899999999999999999999999999999999999988654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.57  E-value=3e-07  Score=75.91  Aligned_cols=71  Identities=17%  Similarity=0.337  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHhcc
Q 012208          346 YTGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLGGSLLVQMYR  416 (468)
Q Consensus       346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~llgE~~t~~~~iG~~lIi~Gv~l~~~~~  416 (468)
                      ..++++.++++.++.+++++.+.+.+..+ ..+.|+++.+++++++||++++.+++|.++|++|+++....+
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            45677788999999999999999999888 899999999999999999999999999999999999887643

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.49  E-value=2.2e-06  Score=70.70  Aligned_cols=67  Identities=16%  Similarity=0.232  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccCC
Q 012208          189 GLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG  255 (468)
Q Consensus       189 gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~~  255 (468)
                      .++.+.+++++.+++++.|.+.+..+ ..+.|+++.+++. ++||++++.+++|+++++.|++++...+
T Consensus        37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            34567788999999999999999998 7999999999999 8999999999999999999999986543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.24  E-value=3.7e-06  Score=71.93  Aligned_cols=66  Identities=17%  Similarity=0.233  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHhcCchhhHHHH-hhhhHHHHHHHHH-HhcCccchhHHHHHHHHHHhhhhhccC
Q 012208          189 GLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (468)
Q Consensus       189 gl~~~~~~~~~~~Al~~~~~~~a~ii-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~l~Gv~li~~~  254 (468)
                      .++.+++++++.++++++|++.+..+ ..+.|+++.++++ +++|++++.+++|++++++||+++...
T Consensus        37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            44567889999999999999999999 8999999999998 899999999999999999999998643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00