Citrus Sinensis ID: 012234
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 468 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUT5 | 657 | Pentatricopeptide repeat- | yes | no | 0.762 | 0.543 | 0.624 | 1e-174 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.923 | 0.604 | 0.364 | 3e-93 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.929 | 0.499 | 0.371 | 8e-93 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.978 | 0.672 | 0.372 | 1e-90 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.991 | 0.590 | 0.362 | 1e-90 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.980 | 0.603 | 0.343 | 2e-90 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.989 | 0.627 | 0.348 | 3e-90 | |
| P0C899 | 686 | Putative pentatricopeptid | no | no | 0.989 | 0.674 | 0.349 | 3e-89 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.991 | 0.585 | 0.332 | 4e-89 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.989 | 0.641 | 0.339 | 7e-87 |
| >sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 613 bits (1580), Expect = e-174, Method: Compositional matrix adjust.
Identities = 289/463 (62%), Positives = 363/463 (78%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS+RD+VSWNSMI+GYSQ G +E+CK +++ ML +P+GVTV+SV QACGQSSD++F
Sbjct: 193 MSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIF 252
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G+EVH +IE+HI+MDL +CNA+IG YAKCGSLDYARAL DEMS+KD V+Y AIISGYM
Sbjct: 253 GLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMA 312
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HG V++AM LF M+ GLSTWNA+ISGL+QNN HE V++ REM G RPN VT+SS+
Sbjct: 313 HGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSL 372
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
++ SNLKGGKEIH +A++N D NIYV T+IID YAK GFL GAQRVFD K RSL
Sbjct: 373 LPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSL 432
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I WTAII+AYA HGD+ A SLF++M G +PD VT TAVLSA AHSG D A IF++
Sbjct: 433 IAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDS 492
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M +Y I+P VEHYACMV VLSRA ++S+A EF+SKMP+ P AKVWGALL GAS+ GD+E
Sbjct: 493 MLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLE 552
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
+ +F CD LFE+EPENTGNY IMANLY+QAGRW+EA+ VR +MK GL KIPG SWIE
Sbjct: 553 IARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETE 612
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
GL+SF+AKD+S ++S+++Y I+E L+ M ++ Y+ E++E
Sbjct: 613 KGLRSFIAKDSSCERSKEMYEIIEGLVESMSDKEYIRKQELDE 655
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (878), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/469 (36%), Positives = 273/469 (58%), Gaps = 37/469 (7%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M ++D+VS+N++IAGY+Q G YE+ + REM + L+PD T+ SVL + D++
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREM-GTTDLKPDSFTLSSVLPIFSEYVDVIK 260
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G E+H +VI I D++I ++L+ MYAK ++ + + + +D +S
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS---------- 310
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
WN++++G VQN R+ L L R+M + V+P AV SS+
Sbjct: 311 ---------------------WNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSV 349
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+H + L GK++HGY ++ + NI++A+A++D Y+K G + A+++FDR
Sbjct: 350 IPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDE 409
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ WTAII +A HG +AVSLF EM G++P+ V F AVL+AC+H GLVD+AW FN+
Sbjct: 410 VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNS 469
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M+ YG+ +EHYA + +L RA ++ EA F+SKM V+P+ VW LL S+ ++E
Sbjct: 470 MTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLE 529
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
L + V + +F ++ EN G Y++M N+Y+ GRW E ++R +M++ GL K P SWIE
Sbjct: 530 LAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMK 589
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
FV+ D S ++I L+ ++ M +EGYV +L +V+EE
Sbjct: 590 NKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEE 638
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 341 bits (874), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 272/474 (57%), Gaps = 39/474 (8%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS R +VS+ SMIAGY++ G E LF EM + PD TV +VL C + +
Sbjct: 357 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI-SPDVYTVTAVLNCCARYRLLDE 415
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G VH ++ E+ + D+++ NAL+ MYAKCGS+ A + EM KD +S++ II GY
Sbjct: 416 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 475
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+ + +A+ LF ++ ++ P+ T++ +
Sbjct: 476 NCYANEALSLFNLL------------------------------LEEKRFSPDERTVACV 505
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ S G+EIHGY ++N Y + +VA +++D YAK G L A +FD + L
Sbjct: 506 LPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDL 565
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ WT +I+ Y HG +A++LFN+M GI+ D ++F ++L AC+HSGLVD+ W FN
Sbjct: 566 VSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNI 625
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M + I+P+VEHYAC+V +L+R + +A F+ MP+ P A +WGALL G I DV+
Sbjct: 626 MRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVK 685
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
L + V + +FE+EPENTG Y++MAN+Y++A +W++ R+R+++ + GL K PG SWIE
Sbjct: 686 LAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIK 745
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLL--------DEVEEESA 466
G + FVA D+S ++E I L ++ M EEGY L +E+E+E A
Sbjct: 746 GRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEA 799
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 171/459 (37%), Positives = 268/459 (58%), Gaps = 1/459 (0%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
RD+VSWN +I GY + G E+ +++ ++ S ++PD VT++ ++ +C D+ G E
Sbjct: 220 RDLVSWNCLINGYKKIGEAEKAIYVYK-LMESEGVKPDDVTMIGLVSSCSMLGDLNRGKE 278
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
+ +V E+ ++M + + NAL+ M++KCG + AR + D + + VS++ +ISGY G
Sbjct: 279 FYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGL 338
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183
++ + LF M+ + WNA+I G VQ R + L L +EMQ S +P+ +T+ S
Sbjct: 339 LDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSA 398
Query: 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
S L G IH Y K N+ + T+++D YAK G + A VF + R+ + +
Sbjct: 399 CSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTY 458
Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
TAII A HGDAS A+S FNEM++ GI PD +TF +LSAC H G++ D F+ M
Sbjct: 459 TAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKS 518
Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
++ + P ++HY+ MV +L RA + EA + MP++ A VWGALL+G + G+VELG+
Sbjct: 519 RFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGE 578
Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
L E++P ++G Y+++ +Y +A W++A R R M E G+ KIPG S IE +G +
Sbjct: 579 KAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIV 638
Query: 424 QSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVE 462
F+ +D S +SE+IY L L MR VL E E
Sbjct: 639 CEFIVRDKSRPESEKIYDRLHCLGRHMRSSLSVLFSEYE 677
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 171/472 (36%), Positives = 282/472 (59%), Gaps = 8/472 (1%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M++RDIV+WNSMI+G++Q G+ +F +ML +L PD T+ SVL AC +
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV--SYSAIISGY 118
G ++H+ ++ + + + NALI MY++CG ++ AR L+++ KD ++A++ GY
Sbjct: 298 GKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357
Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS 178
+ G + +A ++F +K + W A+I G Q+ + ++L R M G RPN+ T++
Sbjct: 358 IKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLA 417
Query: 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG- 237
++ S+ S ++L GK+IHG AVK+ ++ V+ A+I YAK G + A R FD +
Sbjct: 418 AMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCE 477
Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
R + WT++I A A HG A +A+ LF ML G++PD +T+ V SAC H+GLV++
Sbjct: 478 RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY 537
Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
F+ M I P++ HYACMV + RA + EA EF+ KMP++P WG+LL +
Sbjct: 538 FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHK 597
Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
+++LGK + L +EPEN+G Y +ANLYS G+W+EA ++R+ MK+ + K G SWI
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Query: 418 ECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
E + F +D + + +IY+ ++++ +++ GYV +L ++EEE
Sbjct: 658 EVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEE 709
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/469 (34%), Positives = 283/469 (60%), Gaps = 10/469 (2%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
+IVSWN +++G+++ G+++E +F++ ++ PD VTV SVL + G S + G +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQK-IHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 65 HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
H +VI+ + D + +A+I MY K G + +L ++ + +A I+G +G V
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+KA+++F++ K + +W ++I+G QN + L+L REMQ +GV+PN VTI S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+ + L G+ HG+AV+ N++V +A+ID YAK G ++ +Q VF+ ++L
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ W ++++ ++ HG A + +S+F ++ ++PD ++FT++LSAC GL D+ W F
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
MS +YGI+P +EHY+CMV +L RA ++ EA + + +MP +P + VWGALL + +V+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
L + + LF +EPEN G Y++++N+Y+ G W E D +R +M+ GL K PG SWI+
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
+ + +A D S + +QI ++ + MR+ G+ L +VEE+
Sbjct: 635 NRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQ 683
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 164/470 (34%), Positives = 278/470 (59%), Gaps = 7/470 (1%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ ++D+VSWNSMI G+ Q G ++ LF++M S ++ VT+V VL AC + ++ F
Sbjct: 192 IKEKDVVSWNSMINGFVQKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRNLEF 250
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +V +++ E+ + ++L + NA++ MY KCGS++ A+ L D M +KD V+++ ++ GY +
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQ-ASGVRPNAVTISS 179
E A ++ M + + WNA+IS QN + L + E+Q ++ N +T+ S
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370
Query: 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
S + L+ G+ IH Y K+ N +V +A+I Y+K G L ++ VF+ + R
Sbjct: 371 TLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRD 430
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
+ +W+A+I A HG ++AV +F +M ++P+ VTFT V AC+H+GLVD+A +F+
Sbjct: 431 VFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFH 490
Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
M YGI P +HYAC+V VL R+ + +A +F+ MP+ PS VWGALL I ++
Sbjct: 491 QMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANL 550
Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
L + C L E+EP N G +++++N+Y++ G+W+ +R+ M+ +GL K PG S IE
Sbjct: 551 NLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEI 610
Query: 420 SGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
G + F++ D + SE++Y L ++ ++ GY +L +EEE
Sbjct: 611 DGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEE 660
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 329 bits (843), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 177/506 (34%), Positives = 276/506 (54%), Gaps = 43/506 (8%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ +R+++ N MI Y GFY E +F M V RPD T VL+AC S IV
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNV-RPDHYTFPCVLKACSCSGTIVI 158
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++H + + L++ N L+ MY KCG L AR +LDEMS +D VS+++++ GY
Sbjct: 159 GRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQ 218
Query: 121 HGFVEKAM-------------------------------------DLFQVMKRPGLSTWN 143
+ + A+ D+F M + L +WN
Sbjct: 219 NQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWN 278
Query: 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203
+I ++N ++L M+A G P+AV+I+S+ S L GK+IHGY +
Sbjct: 279 VMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERK 338
Query: 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF 263
+ N+ + A+ID YAK G L A+ VF+ K R ++ WTA+ISAY G AV+LF
Sbjct: 339 KLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALF 398
Query: 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
+++ ++G+ PD + F L+AC+H+GL+++ F M+ Y I P +EH ACMV +L R
Sbjct: 399 SKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGR 458
Query: 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383
A ++ EA F+ M ++P+ +VWGALL + D ++G D LF++ PE +G Y+++
Sbjct: 459 AGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLL 518
Query: 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLIL 443
+N+Y++AGRW+E +R MK GL K PG S +E + + +F+ D S +S++IY L
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYREL 578
Query: 444 ERLLGLMREEGYV-----LLDEVEEE 464
+ L+ M+E GYV L +VEEE
Sbjct: 579 DVLVKKMKELGYVPDSESALHDVEEE 604
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (842), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 178/536 (33%), Positives = 272/536 (50%), Gaps = 72/536 (13%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M ++D + WN+MI+GY + Y E +FR+++N R D T++ +L A + ++
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG--- 117
GM++H+ ++ ++ I +Y+KCG + AL E D V+Y+A+I G
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299
Query: 118 ---------------------------------------YMVHGF--------------- 123
Y +HG+
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359
Query: 124 ----------VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173
+E A LF L +WNA+ISG QN E + L REMQ S PN
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419
Query: 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233
VTI+ I S + L GK +H ++ +IYV+TA+I YAK G + A+R+FD
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFD 479
Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
++ + W +IS Y HG +A+++F EMLN+GI P PVTF VL AC+H+GLV +
Sbjct: 480 LMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKE 539
Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
+IFN+M +YG +PSV+HYACMV +L RA + A +F+ M ++P + VW LL
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGAC 599
Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
I D L + V + LFE++P+N G +++++N++S + +A VR+ K+ LAK PG
Sbjct: 600 RIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPG 659
Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY-----VLLDEVEEE 464
+ IE F + D S + ++IY LE+L G MRE GY + L +VEEE
Sbjct: 660 YTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEE 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 159/469 (33%), Positives = 275/469 (58%), Gaps = 6/469 (1%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS RD+V+WN+MI Y + G +E LF EM +S V+ PD + + +++ ACG++ ++ +
Sbjct: 172 MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM-PDEMILCNIVSACGRTGNMRY 230
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
++ F+IE+ ++MD + AL+ MYA G +D AR +MS ++ +A++SGY
Sbjct: 231 NRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSK 290
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
G ++ A +F ++ L W +IS V+++ + L + EM SG++P+ V++ S+
Sbjct: 291 CGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSV 350
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S ++ L K +H N + + + A+I+ YAK G L + VF++ R++
Sbjct: 351 ISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNV 410
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ W+++I+A + HG+AS A+SLF M ++P+ VTF VL C+HSGLV++ IF +
Sbjct: 411 VSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFAS 470
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M+ +Y I P +EHY CMV + RA + EA E + MPV + +WG+L+ I G++E
Sbjct: 471 MTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELE 530
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LGKF + E+EP++ G ++M+N+Y++ RW++ +R M+E + K G S I+ +
Sbjct: 531 LGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQN 590
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
G F+ D +S +IY L+ ++ ++ GYV +L +VEEE
Sbjct: 591 GKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEE 639
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 468 | ||||||
| 255568474 | 654 | pentatricopeptide repeat-containing prot | 0.933 | 0.668 | 0.710 | 0.0 | |
| 225439799 | 667 | PREDICTED: pentatricopeptide repeat-cont | 0.918 | 0.644 | 0.713 | 0.0 | |
| 449522252 | 635 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.989 | 0.729 | 0.672 | 0.0 | |
| 449440359 | 595 | PREDICTED: pentatricopeptide repeat-cont | 0.829 | 0.652 | 0.701 | 0.0 | |
| 224088613 | 621 | predicted protein [Populus trichocarpa] | 0.931 | 0.702 | 0.661 | 0.0 | |
| 356545955 | 667 | PREDICTED: pentatricopeptide repeat-cont | 0.916 | 0.643 | 0.638 | 0.0 | |
| 297827241 | 669 | pentatricopeptide repeat-containing prot | 0.818 | 0.572 | 0.633 | 1e-176 | |
| 15228117 | 657 | pentatricopeptide repeat-containing prot | 0.762 | 0.543 | 0.624 | 1e-173 | |
| 115452309 | 598 | Os03g0283500 [Oryza sativa Japonica Grou | 0.888 | 0.695 | 0.529 | 1e-128 | |
| 242036089 | 596 | hypothetical protein SORBIDRAFT_01g03886 | 0.888 | 0.697 | 0.534 | 1e-127 |
| >gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/467 (71%), Positives = 401/467 (85%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M+KRD+VSWNSMI+GYSQGG YE+CK L+REM++ RP+GVTVVSVLQACGQ+ D+ F
Sbjct: 187 MTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAF 246
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
GMEVH F++++ +++D+ +CNALIG+YAKCGSLDYAR L DEMS+KDEV+Y AIISG M+
Sbjct: 247 GMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLML 306
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HG+V+++++LF+ MK LSTWNAVI+GLVQNNRHE VLDLVREMQA G RPNAVT+SS+
Sbjct: 307 HGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSV 366
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S ++FS+LKGGKEIH YA+K Y RNIYVATAIID YAK+G+L GAQRVFD+ K RSL
Sbjct: 367 LSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSL 426
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+IWTAIISAYA HGDA+ A+ LF+EML GIQPDPVTFTAVL+ACAH G+VDKAW+IF +
Sbjct: 427 VIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFES 486
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M +YGIQP VEHYAC+VG L +ARR+SEA EFVSKMP++PSAKVWGALL+GASIS DVE
Sbjct: 487 MFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKVWGALLHGASISSDVE 546
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LGK VCD+LFEIEPENTGNY+IMANLYSQAGRW EAD VRE+M + GL KIPG SWIE S
Sbjct: 547 LGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMNKVGLQKIPGSSWIETS 606
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAY 467
GL+SF+A DT + E+I++IL+ LLGLMR+EG VL D ++EES Y
Sbjct: 607 EGLRSFIATDTCTENVEEIHVILKGLLGLMRDEGKVLQDMLDEESIY 653
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37310-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/468 (71%), Positives = 400/468 (85%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M RDIVSWNSMIAGYSQGGFYE+CK L+R+ML+S LRP+GVTVVSVLQAC Q++D+VF
Sbjct: 200 MHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVF 259
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
GM+VH F+IE ++MD+ N+LIG+YAKCGSLDYAR L +EMS+KDEV+Y +I+SGYM
Sbjct: 260 GMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMT 319
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HGFV+KAMDLF+ MK P LSTWNAVISGLVQNN +E +L+LV+EMQ G RPNAVT+SSI
Sbjct: 320 HGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSI 379
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
FS FSNLKGGK IH YA++N Y NIYVAT+IID YAK GFL GAQ VFD+ K RSL
Sbjct: 380 LPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSL 439
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I+WTAIISAY+AHGDA+ A+ LF +ML+NG QPDPVTFTAVL+ACAHSG+V++AW IF+
Sbjct: 440 IVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDE 499
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M +YG QP VEHYACMVGVLSRA +SEA EF+ KMP++P+AKVWGALL G S+SGDVE
Sbjct: 500 MFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVE 559
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LGKFVCDHLF +EPENTGNY+IMANLYSQAGRW+EA+ +RE+MK+ GL KIPG SWIE S
Sbjct: 560 LGKFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIETS 619
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAYV 468
GGL+SF+A+D S ++SE+IY +LE LLGLMREEGY L DE++EE AY+
Sbjct: 620 GGLRSFIARDVSSERSEEIYGMLEGLLGLMREEGYTLQDELDEECAYI 667
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g37310-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/464 (67%), Positives = 384/464 (82%), Gaps = 1/464 (0%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +RD VSWN+M+AGYSQGG YEECK LFR ML+S ++P+ +T VSVLQAC QS+D+ F
Sbjct: 169 MPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTF 228
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G+EVH FV ES IKMD+ + NA+IG+YAKCG LDYAR L +EM +KD ++Y ++ISGYMV
Sbjct: 229 GIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMV 288
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HGFV +AMDLF+ +RP L TWNAVISGLVQNNR E +D+ R MQ+ G RPN VT++SI
Sbjct: 289 HGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASI 348
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+FSHFS LKGGKEIHGYA++N YDRNIYVATAIID+YAK G+LHGAQ VFD+ KGRSL
Sbjct: 349 LPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSL 408
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I WT+IISAYA HGDA+ A+SLF EML NGIQPD VTFT+VL+ACAHSG +D+AW IFN
Sbjct: 409 IAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNV 468
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
+ +YGIQP VEHYACMVGVLSRA ++S+A EF+SKMP++P+AKVWGALL GAS++GDVE
Sbjct: 469 LLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVE 528
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LGK+V D LFEIEPENTGNY+IMANLYSQ+GRW +AD +R+ MKE L KIPG SWIE S
Sbjct: 529 LGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIETS 588
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464
GG+Q F + +S ++ ++Y +LE LLGL++EEG +L E++ E
Sbjct: 589 GGMQRFCXRHSS-VRTPEVYGMLEGLLGLVKEEGIILQHEIDVE 631
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37310-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/426 (70%), Positives = 361/426 (84%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +RDIVSWN+M+AGYSQGG YE+CK LFR ML+S ++P+ +T VSVLQAC QS+D++F
Sbjct: 169 MPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIF 228
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G+EVH FV ES IKMD+ + NA+IG+YAKCGSLDYAR L +EM +KD ++Y ++ISGYMV
Sbjct: 229 GIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMV 288
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HGFV +AMDLF+ +RP L TWNAVISGLVQNNR E +D+ R MQ+ G RPN VT++SI
Sbjct: 289 HGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASI 348
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+FSHFS LKGGKEIHGYA++N YDRNIYVATAIID+YAK G+LHGAQ VFD+ KGRSL
Sbjct: 349 LPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSL 408
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I WT+IISAYA HGDA+ A+SLF EML NGIQPD VTFT+VL+ACAHSG +D+AW IFN
Sbjct: 409 IAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNV 468
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
+ +YGIQP VEHYACMVGVLSRA ++S+A EF+SKMP++P+AKVWGALL GAS++GDVE
Sbjct: 469 LLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVE 528
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LGK+V D LFEIEPENTGNY+IMANLYSQ+GRW +AD +R+ MKE L KIPG SWIE S
Sbjct: 529 LGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIETS 588
Query: 421 GGLQSF 426
GG+Q F
Sbjct: 589 GGMQRF 594
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088613|ref|XP_002308496.1| predicted protein [Populus trichocarpa] gi|222854472|gb|EEE92019.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/467 (66%), Positives = 371/467 (79%), Gaps = 31/467 (6%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +RD+V+WNSMIAGY+Q GF++ECK L+REM P +P+ VTV+SVLQAC QS D+VF
Sbjct: 185 MRERDVVTWNSMIAGYAQAGFFKECKELYREMGALPGFKPNAVTVLSVLQACMQSQDLVF 244
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
GMEVH +++++ +++D+ +CNALIG+YAKCGSLDYAR L DEMS+KDEV+Y AIISGYM
Sbjct: 245 GMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGYMA 304
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HG V+K M+LF+ MK LSTWNAVISGLVQNNRHE V+DLVREMQ G RPNAVT+SS+
Sbjct: 305 HGVVDKGMELFREMKSRVLSTWNAVISGLVQNNRHEGVVDLVREMQGLGFRPNAVTLSSV 364
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S+FSNLKGGKEIHGYAVKN YDRNIYVATAIIDTYAK GFL GAQ VFD+ K RSL
Sbjct: 365 LPTLSYFSNLKGGKEIHGYAVKNGYDRNIYVATAIIDTYAKLGFLFGAQYVFDQSKERSL 424
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
IIWTAIISA+AAHGDA+ A++ F+EML+NGIQPD VTFTAVL+ACAH G+VDKAW+IFN+
Sbjct: 425 IIWTAIISAHAAHGDANSALTFFDEMLSNGIQPDHVTFTAVLAACAHCGMVDKAWEIFNS 484
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
MS +YGIQP EHYACMVGVL RA R+S+ATEF+S MP++P+AKVWGALL+GAS+ DVE
Sbjct: 485 MSKKYGIQPLGEHYACMVGVLGRAGRLSQATEFISTMPIEPNAKVWGALLHGASLCVDVE 544
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LGKF CDHLFEIEPENTGNY IMANLYSQAG+W EAD
Sbjct: 545 LGKFACDHLFEIEPENTGNYAIMANLYSQAGKWKEAD----------------------- 581
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAY 467
+DTS + + +IY +L GLM+EEG VL D++E+ + Y
Sbjct: 582 --------EDTSNENALEIYAMLGGFSGLMKEEGNVLEDDLEKVAVY 620
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37310-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/467 (63%), Positives = 381/467 (81%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS+RDIV+WN+MI GYSQ Y+ECK L+ EMLN + P+ VT VSV+QACGQS D+ F
Sbjct: 200 MSERDIVTWNAMIGGYSQRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAF 259
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
GME+H FV ES I++D+ + NA++ MYAKCG LDYAR + + M +KDEV+Y AIISGYM
Sbjct: 260 GMELHRFVKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMD 319
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+G V+ AM +F+ ++ PGL+ WNAVISG+VQN + E V DLVR+MQ SG+ PNAVT++SI
Sbjct: 320 YGLVDDAMGVFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASI 379
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
FS+FSNL+GGKE+HGYA++ Y++N+YV+T+IID Y K G + GA+ VFD + RSL
Sbjct: 380 LPSFSYFSNLRGGKEVHGYAIRRGYEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSL 439
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
IIWT+IISAYAAHGDA A+ L+ +ML+ GI+PDPVT T+VL+ACAHSGLVD+AW+IFN+
Sbjct: 440 IIWTSIISAYAAHGDAGLALGLYAQMLDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNS 499
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M +YGIQP VEHYACMVGVLSRA ++SEA +F+S+MP++PSAKVWG LL+GAS+ GDVE
Sbjct: 500 MPSKYGIQPLVEHYACMVGVLSRAGKLSEAVQFISEMPIEPSAKVWGPLLHGASVFGDVE 559
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
+GKF CDHLFEIEPENTGNYIIMANLY+ AG+W++A VRE+MK GL KI G SWIE S
Sbjct: 560 IGKFACDHLFEIEPENTGNYIIMANLYAHAGKWEQAGEVRERMKVIGLQKIRGSSWIETS 619
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAY 467
GGL SF+AKD S +S++IY +LE LLGLMREEG VL +E++ E+ +
Sbjct: 620 GGLLSFIAKDVSNGRSDEIYALLEGLLGLMREEGCVLQEELDYENVF 666
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827241|ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327342|gb|EFH57762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 296/467 (63%), Positives = 369/467 (79%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS RD+VSWNSMI+GYSQ G +E+CK L++ ML +P+ VTV+SVLQACGQSSD+VF
Sbjct: 193 MSDRDVVSWNSMISGYSQSGSFEDCKKLYKAMLGCSDFKPNEVTVISVLQACGQSSDLVF 252
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
GMEVH +IE+HI+MDL +CNA+IG YAKCGSLDYARAL DEMS+KD V+Y AIISGYM
Sbjct: 253 GMEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMA 312
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HG V++AM LF M+ GLSTWNAVISGL+QNN HE V++ REM G RPN VT+SS+
Sbjct: 313 HGLVKEAMALFSEMESIGLSTWNAVISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSL 372
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
++ SNLKGGKEIH +A++N D NIYV T+IID YAK GFL GAQRVFD K RSL
Sbjct: 373 LPSLTYSSNLKGGKEIHAFAIRNGSDNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSL 432
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I+WTAII+AYA HGD+ A SLF++M G +PD VT TAVLSA AHSG DKA IF++
Sbjct: 433 IVWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDNVTLTAVLSAFAHSGDSDKAQHIFDS 492
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M +Y I+P VEHYACMV VLSRA ++S A EF+SKMP++P AKVWGALL GAS+ GDVE
Sbjct: 493 MLTKYNIEPGVEHYACMVSVLSRAGKLSNAMEFISKMPIEPIAKVWGALLNGASVLGDVE 552
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
+ +F CD LFE+EPENTGNY IMANLY+QAGRW+EA+ VR++MK GL KIPG SWIE +
Sbjct: 553 IARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEVVRDKMKRIGLKKIPGTSWIETN 612
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEESAY 467
GL+SF+AKD+S ++S+++Y I+E L+ M ++ Y++ E++E A+
Sbjct: 613 KGLRSFIAKDSSCERSKEMYDIIEGLVESMSDKEYIMKQELDEAYAF 659
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228117|ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37310 gi|4056485|gb|AAC98051.1| hypothetical protein [Arabidopsis thaliana] gi|110741249|dbj|BAF02175.1| hypothetical protein [Arabidopsis thaliana] gi|330254288|gb|AEC09382.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 289/463 (62%), Positives = 363/463 (78%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS+RD+VSWNSMI+GYSQ G +E+CK +++ ML +P+GVTV+SV QACGQSSD++F
Sbjct: 193 MSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIF 252
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G+EVH +IE+HI+MDL +CNA+IG YAKCGSLDYARAL DEMS+KD V+Y AIISGYM
Sbjct: 253 GLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMA 312
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HG V++AM LF M+ GLSTWNA+ISGL+QNN HE V++ REM G RPN VT+SS+
Sbjct: 313 HGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSL 372
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
++ SNLKGGKEIH +A++N D NIYV T+IID YAK GFL GAQRVFD K RSL
Sbjct: 373 LPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSL 432
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I WTAII+AYA HGD+ A SLF++M G +PD VT TAVLSA AHSG D A IF++
Sbjct: 433 IAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDS 492
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M +Y I+P VEHYACMV VLSRA ++S+A EF+SKMP+ P AKVWGALL GAS+ GD+E
Sbjct: 493 MLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLE 552
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
+ +F CD LFE+EPENTGNY IMANLY+QAGRW+EA+ VR +MK GL KIPG SWIE
Sbjct: 553 IARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETE 612
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463
GL+SF+AKD+S ++S+++Y I+E L+ M ++ Y+ E++E
Sbjct: 613 KGLRSFIAKDSSCERSKEMYEIIEGLVESMSDKEYIRKQELDE 655
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group] gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica Group] gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group] gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/421 (52%), Positives = 299/421 (71%), Gaps = 5/421 (1%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREML-----NSPVLRPDGVTVVSVLQACGQS 55
M +RD+VSWNS+I+ ++ G+Y EC LF+E + + + P+GVTV SVL AC Q
Sbjct: 177 MPRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQL 236
Query: 56 SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII 115
+ FG+ VH F ES + MD+ + N++IG YAKCG L YAR LLD M+ KD +SYSA+I
Sbjct: 237 KVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSISYSAMI 296
Query: 116 SGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175
+GYM +G VE+ M LF+ G+S WN+VI+GLVQN R VL L++EM AS V PN+
Sbjct: 297 TGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSA 356
Query: 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235
T+S + FS L G K+ HGYA++N YD++I + +A+ID YAK GFL A++VF
Sbjct: 357 TLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSALIDAYAKAGFLDTARKVFKLT 416
Query: 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295
+ RS I+WT+IISA AAHG+A +A+SLFN+M+ G +PD VTFT VLSACAHSG V +A
Sbjct: 417 EHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACAHSGKVAEAR 476
Query: 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI 355
+FN+M +GI P +E YACMV LSRA + EA + V+KMP +P+AKVWGALL GA++
Sbjct: 477 KVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAVKLVNKMPFEPNAKVWGALLNGAAV 536
Query: 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415
GDVE G++ D LF IEP+NTGNYI+MANLYS AG+W+EA+ +R + GL K+PG +
Sbjct: 537 VGDVEFGRYAFDRLFVIEPKNTGNYIVMANLYSNAGKWEEAETIRSMLWGVGLEKVPGCT 596
Query: 416 W 416
W
Sbjct: 597 W 597
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242036089|ref|XP_002465439.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor] gi|241919293|gb|EER92437.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/419 (53%), Positives = 294/419 (70%), Gaps = 3/419 (0%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLN---SPVLRPDGVTVVSVLQACGQSSD 57
M +RD+VSWNS+I+ Y++ G+Y EC LF+E+ + + +RP+ VTV S+L AC Q
Sbjct: 177 MPQRDVVSWNSLISAYARAGWYRECLELFQELASVHGAGGVRPNSVTVASILHACAQLKA 236
Query: 58 IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISG 117
I +G+ VH F E+ + MD+ + N+ +G YAKCG L YAR L + M KD VSYSA+I+G
Sbjct: 237 IDYGVRVHRFAAENGLDMDVAVWNSTVGFYAKCGKLQYARELFERMPKKDAVSYSAMITG 296
Query: 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177
YM HG V+K M+LFQ G+S WNAVI+GLVQN R VL L+ EM SG+ PN+ T+
Sbjct: 297 YMNHGHVDKGMELFQRSDAQGISIWNAVIAGLVQNGRQSEVLGLLNEMIGSGILPNSATL 356
Query: 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237
S I FS L G K+ HGYA++N YD++I V TA+ID Y+K GFL G+ RVF
Sbjct: 357 SIIIPSVHLFSTLLGVKQAHGYAIRNNYDQSISVVTALIDAYSKAGFLDGSLRVFKSTGD 416
Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
RS I+WT+IISA AAHG+A++A+ LFNEM N I+PD + FTAVL+ACA++G V A +
Sbjct: 417 RSKIVWTSIISAVAAHGEAAEALCLFNEMANARIRPDTIAFTAVLTACAYTGKVADARKV 476
Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
FN+M +GI P +E YACMV SRA + +A E V+ MP +P+AKVWG LL GA+ G
Sbjct: 477 FNSMQVLFGINPVMEQYACMVSAFSRAGMLKDALELVNSMPFEPNAKVWGPLLNGAAEFG 536
Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSW 416
DVELG+FV D LF IEP+NTGNYI+MANLYS AG+W+EA+ +R M GL K+PG SW
Sbjct: 537 DVELGRFVFDRLFIIEPKNTGNYIVMANLYSNAGKWEEAEIIRSMMWGVGLEKVPGCSW 595
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 468 | ||||||
| TAIR|locus:2049726 | 657 | AT2G37310 [Arabidopsis thalian | 0.935 | 0.666 | 0.634 | 1.2e-150 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.933 | 0.555 | 0.369 | 2.2e-84 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.696 | 0.390 | 0.370 | 7.4e-82 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.978 | 0.672 | 0.355 | 6.6e-81 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.933 | 0.592 | 0.350 | 1.4e-80 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.925 | 0.569 | 0.344 | 3.7e-80 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.933 | 0.626 | 0.339 | 1e-75 | |
| TAIR|locus:2089333 | 654 | AT3G16610 "AT3G16610" [Arabido | 0.653 | 0.467 | 0.373 | 2e-75 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.933 | 0.605 | 0.333 | 3.1e-74 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.925 | 0.698 | 0.366 | 6.5e-74 |
| TAIR|locus:2049726 AT2G37310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1470 (522.5 bits), Expect = 1.2e-150, P = 1.2e-150
Identities = 278/438 (63%), Positives = 340/438 (77%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS+RD+VSWNSMI+GYSQ G +E+CK +++ ML +P+GVTV+SV QACGQSSD++F
Sbjct: 193 MSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIF 252
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G+EVH +IE+HI+MDL +CNA+IG YAKCGSLDYARAL DEMS+KD V+Y AIISGYM
Sbjct: 253 GLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMA 312
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTXXXX 180
HG V++AM LF M+ GLSTWNA+ISGL+QNN HE V++ REM G RPN VT
Sbjct: 313 HGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSL 372
Query: 181 XXXXXXXXNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
NLKGGKEIH +A++N D NIYV T+IID YAK GFL GAQRVFD K RSL
Sbjct: 373 LPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSL 432
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I WTAII+AYA HGD+ A SLF++M G +PD VT TAVLSA AHSG D A IF++
Sbjct: 433 IAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDS 492
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M +Y I+P VEHYACMV VLSRA ++S+A EF+SKMP+ P AKVWGALL GAS+ GD+E
Sbjct: 493 MLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLE 552
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
+ +F CD LFE+EPENTGNY IMANLY+QAGRW+EA+ VR +MK GL KIPG SWIE
Sbjct: 553 IARFACDRLFEMEPENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETE 612
Query: 421 GGLQSFVAKDTSGDKSEQ 438
GL+SF+AKD+S ++S++
Sbjct: 613 KGLRSFIAKDSSCERSKE 630
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 826 (295.8 bits), Expect = 2.2e-84, Sum P(2) = 2.2e-84
Identities = 163/441 (36%), Positives = 258/441 (58%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M++RDIV+WNSMI+G++Q G+ +F +ML +L PD T+ SVL AC +
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD-EVS-YSAIISGY 118
G ++H+ ++ + + + NALI MY++CG ++ AR L+++ KD ++ ++A++ GY
Sbjct: 298 GKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357
Query: 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTXX 178
+ G + +A ++F +K + W A+I G Q+ + ++L R M G RPN+ T
Sbjct: 358 IKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLA 417
Query: 179 XXXXXXXXXXNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-G 237
+L GK+IHG AVK+ ++ V+ A+I YAK G + A R FD +
Sbjct: 418 AMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCE 477
Query: 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297
R + WT++I A A HG A +A+ LF ML G++PD +T+ V SAC H+GLV++
Sbjct: 478 RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY 537
Query: 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISG 357
F+ M I P++ HYACMV + RA + EA EF+ KMP++P WG+LL +
Sbjct: 538 FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHK 597
Query: 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417
+++LGK + L +EPEN+G Y +ANLYS G+W+EA ++R+ MK+ + K G SWI
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Query: 418 ECSGGLQSFVAKD-TSGDKSE 437
E + F +D T +K+E
Sbjct: 658 EVKHKVHVFGVEDGTHPEKNE 678
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 121/327 (37%), Positives = 195/327 (59%)
Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
SA+I Y ++ + +F MK L WN++ +G VQ + +E L+L E+Q S R
Sbjct: 493 SALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRER 552
Query: 172 PNAVTXXXXXXXXXXXXNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
P+ T +++ G+E H +K + N Y+ A++D YAK G A +
Sbjct: 553 PDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKA 612
Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
FD R ++ W ++IS+YA HG+ KA+ + +M++ GI+P+ +TF VLSAC+H+GLV
Sbjct: 613 FDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLV 672
Query: 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351
+ F M ++GI+P EHY CMV +L RA R+++A E + KMP KP+A VW +LL
Sbjct: 673 EDGLKQFELML-RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLS 731
Query: 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKI 411
G + +G+VEL + + +P+++G++ +++N+Y+ G W EA +VRE+MK G+ K
Sbjct: 732 GCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKE 791
Query: 412 PGRSWIECSGGLQSFVAKDTSGDKSEQ 438
PGRSWI + + F++KD S K+ Q
Sbjct: 792 PGRSWIGINKEVHIFLSKDKSHCKANQ 818
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 163/459 (35%), Positives = 259/459 (56%)
Query: 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGME 63
RD+VSWN +I GY + G E+ +++ ++ S ++PD VT++ ++ +C D+ G E
Sbjct: 220 RDLVSWNCLINGYKKIGEAEKAIYVYK-LMESEGVKPDDVTMIGLVSSCSMLGDLNRGKE 278
Query: 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123
+ +V E+ ++M + + NAL+ M++KCG + AR + D + + VS++ +ISGY G
Sbjct: 279 FYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGL 338
Query: 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTXXXXXXX 183
++ + LF M+ + WNA+I G VQ R + L L +EMQ S +P+ +T
Sbjct: 339 LDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSA 398
Query: 184 XXXXXNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIW 243
L G IH Y K N+ + T+++D YAK G + A VF + R+ + +
Sbjct: 399 CSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTY 458
Query: 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303
TAII A HGDAS A+S FNEM++ GI PD +TF +LSAC H G++ D F+ M
Sbjct: 459 TAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKS 518
Query: 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363
++ + P ++HY+ MV +L RA + EA + MP++ A VWGALL+G + G+VELG+
Sbjct: 519 RFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGE 578
Query: 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGL 423
L E++P ++G Y+++ +Y +A W++A R R M E G+ KIPG S IE +G +
Sbjct: 579 KAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIV 638
Query: 424 QSFVAKDTSGDKSEQXXXXXXXXXXXXXXXXXVLLDEVE 462
F+ +D S +SE+ VL E E
Sbjct: 639 CEFIVRDKSRPESEKIYDRLHCLGRHMRSSLSVLFSEYE 677
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 154/439 (35%), Positives = 259/439 (58%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
+ ++D+VSWNSMI G+ Q G ++ LF++M + V + VT+V VL AC + ++ F
Sbjct: 192 IKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDV-KASHVTMVGVLSACAKIRNLEF 250
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G +V +++ E+ + ++L + NA++ MY KCGS++ A+ L D M +KD V+++ ++ GY +
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GVRPNAVTXXX 179
E A ++ M + + WNA+IS QN + L + E+Q ++ N +T
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370
Query: 180 XXXXXXXXXNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239
L+ G+ IH Y K+ N +V +A+I Y+K G L ++ VF+ + R
Sbjct: 371 TLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRD 430
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299
+ +W+A+I A HG ++AV +F +M ++P+ VTFT V AC+H+GLVD+A +F+
Sbjct: 431 VFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFH 490
Query: 300 AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV 359
M YGI P +HYAC+V VL R+ + +A +F+ MP+ PS VWGALL I ++
Sbjct: 491 QMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANL 550
Query: 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIEC 419
L + C L E+EP N G +++++N+Y++ G+W+ +R+ M+ +GL K PG S IE
Sbjct: 551 NLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEI 610
Query: 420 SGGLQSFVAKDTSGDKSEQ 438
G + F++ D + SE+
Sbjct: 611 DGMIHEFLSGDNAHPMSEK 629
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 151/438 (34%), Positives = 263/438 (60%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
+IVSWN +++G+++ G+++E +F+++ + PD VTV SVL + G S + G +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFC-PDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 65 HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
H +VI+ + D + +A+I MY K G + +L ++ + +A I+G +G V
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 125 EKAMDLFQVMKRPGLS----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTXXXX 180
+KA+++F++ K + +W ++I+G QN + L+L REMQ +GV+PN VT
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394
Query: 181 XXXXXXXXNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
L G+ HG+AV+ N++V +A+ID YAK G ++ +Q VF+ ++L
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ W ++++ ++ HG A + +S+F ++ ++PD ++FT++LSAC GL D+ W F
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
MS +YGI+P +EHY+CMV +L RA ++ EA + + +MP +P + VWGALL + +V+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
L + + LF +EPEN G Y++++N+Y+ G W E D +R +M+ GL K PG SWI+
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634
Query: 421 GGLQSFVAKDTSGDKSEQ 438
+ + +A D S + +Q
Sbjct: 635 NRVYTLLAGDKSHPQIDQ 652
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 151/445 (33%), Positives = 252/445 (56%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M R++VSWNS+I + Q G E +F+ ML S V PD VT+ SV+ AC S I
Sbjct: 213 MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRV-EPDEVTLASVISACASLSAIKV 271
Query: 61 GMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119
G EVH V+++ ++ D+ + NA + MYAKC + AR + D M ++ ++ +++ISGY
Sbjct: 272 GQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYA 331
Query: 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTXXX 179
+ + A +F M + +WNA+I+G QN +E L L ++ V P +
Sbjct: 332 MAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFAN 391
Query: 180 XXXXXXXXXNLKGGKEIHGYAVKNRY------DRNIYVATAIIDTYAKTGFLHGAQRVFD 233
L G + H + +K+ + + +I+V ++ID Y K G + VF
Sbjct: 392 ILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR 451
Query: 234 RFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293
+ R + W A+I +A +G ++A+ LF EML +G +PD +T VLSAC H+G V++
Sbjct: 452 KMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEE 511
Query: 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353
F++M+ +G+ P +HY CMV +L RA + EA + +MP++P + +WG+LL
Sbjct: 512 GRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAAC 571
Query: 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPG 413
+ ++ LGK+V + L E+EP N+G Y++++N+Y++ G+W++ VR+ M++ G+ K PG
Sbjct: 572 KVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPG 631
Query: 414 RSWIECSGGLQSFVAKDTSGDKSEQ 438
SWI+ G F+ KD S + +Q
Sbjct: 632 CSWIKIQGHDHVFMVKDKSHPRKKQ 656
|
|
| TAIR|locus:2089333 AT3G16610 "AT3G16610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 115/308 (37%), Positives = 171/308 (55%)
Query: 112 SAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171
+ IIS Y +G + A F + + ++N++I+G V N R E L EM+ SG+R
Sbjct: 347 NTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIR 406
Query: 172 PNAVTXXXXXXXXXXXXNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231
P+ T L G HGY V + Y N + A++D Y K G L A+RV
Sbjct: 407 PDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRV 466
Query: 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291
FD R ++ W ++ + HG +A+SLFN M G+ PD VT A+LSAC+HSGLV
Sbjct: 467 FDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLV 526
Query: 292 DKAWDIFNAMS-GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350
D+ +FN+MS G + + P ++HY CM +L+RA + EA +FV+KMP +P +V G LL
Sbjct: 527 DEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLL 586
Query: 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410
+ ELG V + + E T + ++++N YS A RW++A R+R K+ GL K
Sbjct: 587 SACWTYKNAELGNEVSKKMQSLG-ETTESLVLLSNTYSAAERWEDAARIRMIQKKRGLLK 645
Query: 411 IPGRSWIE 418
PG SW++
Sbjct: 646 TPGYSWVD 653
|
|
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 146/438 (33%), Positives = 251/438 (57%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
MS RD+V+WN+MI Y + G +E LF EM +S V+ PD + + +++ ACG++ ++ +
Sbjct: 172 MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM-PDEMILCNIVSACGRTGNMRY 230
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
++ F+IE+ ++MD + AL+ MYA G +D AR +MS ++ +A++SGY
Sbjct: 231 NRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSK 290
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTXXXX 180
G ++ A +F ++ L W +IS V+++ + L + EM SG++P+ V+
Sbjct: 291 CGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSV 350
Query: 181 XXXXXXXXNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
L K +H N + + + A+I+ YAK G L + VF++ R++
Sbjct: 351 ISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNV 410
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ W+++I+A + HG+AS A+SLF M ++P+ VTF VL C+HSGLV++ IF +
Sbjct: 411 VSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFAS 470
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M+ +Y I P +EHY CMV + RA + EA E + MPV + +WG+L+ I G++E
Sbjct: 471 MTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELE 530
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LGKF + E+EP++ G ++M+N+Y++ RW++ +R M+E + K G S I+ +
Sbjct: 531 LGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQN 590
Query: 421 GGLQSFVAKDTSGDKSEQ 438
G F+ D +S +
Sbjct: 591 GKSHEFLIGDKRHKQSNE 608
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 159/434 (36%), Positives = 243/434 (55%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEV 64
D WN MI G+S E L++ ML S + T S+L+AC S ++
Sbjct: 79 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPH-NAYTFPSLLKACSNLSAFEETTQI 137
Query: 65 HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV 124
H + + + D++ N+LI YA G+ A L D + + D+VS++++I GY+ G +
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197
Query: 125 EKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTXXXXXXXX 184
+ A+ LF+ M +W +ISG VQ + ++ L L EMQ S V P+ V+
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSAC 257
Query: 185 XXXXNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT 244
L+ GK IH Y K R + + +ID YAK G + A VF K +S+ WT
Sbjct: 258 AQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWT 317
Query: 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304
A+IS YA HG +A+S F EM GI+P+ +TFTAVL+AC+++GLV++ IF +M
Sbjct: 318 ALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERD 377
Query: 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKF 364
Y ++P++EHY C+V +L RA + EA F+ +MP+KP+A +WGALL I ++ELG+
Sbjct: 378 YNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE 437
Query: 365 VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424
+ + L I+P + G Y+ AN+++ +WD+A R MKE G+AK+PG S I G
Sbjct: 438 IGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTH 497
Query: 425 SFVAKDTSGDKSEQ 438
F+A D S + E+
Sbjct: 498 EFLAGDRSHPEIEK 511
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 468 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-104 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-103 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-55 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-48 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-30 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-27 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 326 bits (836), Expect = e-104
Identities = 159/469 (33%), Positives = 255/469 (54%), Gaps = 37/469 (7%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +R++ SW ++I G G Y E ALFREM + T V +L+A
Sbjct: 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARA 242
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G ++H V+++ + D ++ ALI MY+KCG ++ AR + D M +K V+++++++GY +
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
HG+ E+A+ L+ EM+ SGV + T S +
Sbjct: 303 HGYSEEALCLYY-------------------------------EMRDSGVSIDQFTFSIM 331
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
+FS + L+ K+ H ++ + +I TA++D Y+K G + A+ VFDR ++L
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
I W A+I+ Y HG +KAV +F M+ G+ P+ VTF AVLSAC +SGL ++ W+IF +
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
MS + I+P HYACM+ +L R + EA + + P KP+ +W ALL I ++E
Sbjct: 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LG+ + L+ + PE NY+++ NLY+ +GR EA +V E +K GL+ P +WIE
Sbjct: 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVK 571
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYV-----LLDEVEEE 464
SF + D +S +IY L+ L+ + E GYV LL +V+E+
Sbjct: 572 KQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED 620
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 326 bits (836), Expect = e-103
Identities = 153/455 (33%), Positives = 251/455 (55%), Gaps = 34/455 (7%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +D VSW +MI+GY + G ++ + M V PD +T+ SVL AC D+
Sbjct: 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV-SPDEITIASVLSACACLGDLDV 407
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G+++H + + + NALI MY+KC +D
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCID-------------------------- 441
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
KA+++F + + +W ++I+GL NNR L R+M + ++PN+VT+ +
Sbjct: 442 -----KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAA 495
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S + L GKEIH + ++ + ++ A++D Y + G ++ A F+ + + +
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDV 554
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ W +++ Y AHG S AV LFN M+ +G+ PD VTF ++L AC+ SG+V + + F++
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
M +Y I P+++HYAC+V +L RA +++EA F++KMP+ P VWGALL I VE
Sbjct: 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE 674
Query: 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS 420
LG+ H+FE++P + G YI++ NLY+ AG+WDE RVR+ M+E+GL PG SW+E
Sbjct: 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK 734
Query: 421 GGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGY 455
G + +F+ D S + ++I +LE M+ G
Sbjct: 735 GKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL 769
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 6e-55
Identities = 104/340 (30%), Positives = 170/340 (50%), Gaps = 33/340 (9%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +RD+ SWN ++ GY++ G+++E L+ ML + V RPD T VL+ CG D+
Sbjct: 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV-RPDVYTFPCVLRTCGGIPDLAR 205
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G EVH V+ ++D+ + NALI MY KCG + AR + D M +D +S
Sbjct: 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS---------- 255
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
WNA+ISG +N L+L M+ V P+ +TI+S+
Sbjct: 256 ---------------------WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S + + G+E+HGY VK + ++ V ++I Y G A++VF R + +
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300
+ WTA+IS Y +G KA+ + M + + PD +T +VLSACA G +D + +
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL-HE 413
Query: 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340
++ + G+ V ++ + S+ + I +A E +P K
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 3e-48
Identities = 120/444 (27%), Positives = 192/444 (43%), Gaps = 81/444 (18%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVF 60
M +RD +SWN+MI+GY + G E LF M V PD +T+ SV+ AC D
Sbjct: 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV-DPDLMTITSVISACELLGDERL 306
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120
G E+H +V+++ +D+ +CN+LI MY GS A + M KD VS++A+ISGY
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366
Query: 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180
+G +KA++ + M+ V P+ +TI+S+
Sbjct: 367 NGLPDKALETY-------------------------------ALMEQDNVSPDEITIASV 395
Query: 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240
S + +L G ++H A + + VA A+I+ Y+K + A VF + +
Sbjct: 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG----------- 289
I WT+II+ + +A+ F +ML ++P+ VT A LSACA G
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 290 ---------------LVD---------KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325
L+D AW+ FN+ + V + ++
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHG 568
Query: 326 RISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFV---CDHLFEIEPENTGN 379
+ S A E ++M V P + +LL S SG V G + + I P N +
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKH 627
Query: 380 YIIMANLYSQAGRWDEADRVREQM 403
Y + +L +AG+ EA +M
Sbjct: 628 YACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-30
Identities = 81/335 (24%), Positives = 148/335 (44%), Gaps = 37/335 (11%)
Query: 20 GFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWI 79
G + E LF + T ++++AC I V+ V S + D ++
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 80 CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
N ++ M+ KCG L AR L DEM +++ S+ II G + G +A LF+ M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM----- 215
Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199
W + + R V + + L S + G+++H
Sbjct: 216 --W--------------------EDGSDAEPRTFVVMLRASAGLGSARA----GQQLHCC 249
Query: 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259
+K + +V+ A+ID Y+K G + A+ VFD ++ + W ++++ YA HG + +A
Sbjct: 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA 309
Query: 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG--QYGIQPSVEHYACM 317
+ L+ EM ++G+ D TF+ ++ + L++ A A +G + G + +
Sbjct: 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK---QAHAGLIRTGFPLDIVANTAL 366
Query: 318 VGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
V + S+ R+ +A +MP K + W AL+ G
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAG 400
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 4e-27
Identities = 82/343 (23%), Positives = 146/343 (42%), Gaps = 34/343 (9%)
Query: 10 NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI 69
NS + G E+ L M V D V++ + C + G V + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRV-PVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113
Query: 70 ESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMD 129
SH + + + NA++ M+ + G L +A + +M ++D S++ ++ GY G+ ++A+
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 130 LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189
L+ M W +GVRP+ T + +
Sbjct: 174 LYHRM------LW-------------------------AGVRPDVYTFPCVLRTCGGIPD 202
Query: 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISA 249
L G+E+H + V+ ++ ++ V A+I Y K G + A+ VFDR R I W A+IS
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
Y +G+ + + LF M + PD +T T+V+SAC G ++ + + G
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM-HGYVVKTGFAV 321
Query: 310 SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYG 352
V ++ + EA + S+M K A W A++ G
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISG 363
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 1e-17
Identities = 84/376 (22%), Positives = 159/376 (42%), Gaps = 71/376 (18%)
Query: 1 MSKRDIVSWNSMIAGYSQGGFYEECKA--------LFREMLNSPVLRPDGVTVVSVLQAC 52
M KR ++ + + F++ CK F +++ +P L T ++ C
Sbjct: 396 MEKRGLLDMDKI----YHAKFFKACKKQRAVKEAFRFAKLIRNPTLS----TFNMLMSVC 447
Query: 53 GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS----DKDE 108
S DI + V V E+ +K D + LI AK G +D + EM + +
Sbjct: 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507
Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVRE 164
++ A+I G G V KA + +M+ +P +NA+IS Q+ + D++ E
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567
Query: 165 MQASG--VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222
M+A + P+ +T+ A++ A
Sbjct: 568 MKAETHPIDPDHITVG-----------------------------------ALMKACANA 592
Query: 223 GFLHGAQRVFDRF-----KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277
G + A+ V+ KG + ++T +++ + GD A+S++++M G++PD V
Sbjct: 593 GQVDRAKEVYQMIHEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK- 336
F+A++ H+G +DKA++I Q GI+ Y+ ++G S A+ +A E
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 337 --MPVKPSAKVWGALL 350
+ ++P+ AL+
Sbjct: 711 KSIKLRPTVSTMNALI 726
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 13/231 (5%)
Query: 136 RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK---G 192
R + + I LV RH L+L ++A P + S+ +L LK
Sbjct: 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGC--PFTLPASTYDALVEACIALKSIRC 141
Query: 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA 252
K ++ + + ++ + Y+ ++ + K G L A+R+FD R+L W II
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD 201
Query: 253 HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL--VDKAWDIFNAMSGQYGIQPS 310
G+ +A +LF EM +G +P TF +L A A G + +G G
Sbjct: 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT-- 259
Query: 311 VEHYAC-MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVE 360
+C ++ + S+ I +A MP K + W ++L G ++ G E
Sbjct: 260 --FVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSE 307
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 48/225 (21%)
Query: 3 KRDIVSWNSMIAGYSQGGFYEECKALFREML--NSPVLRPDGVTVVSVLQACGQSSDIVF 60
K D V +N++I+ Q G + + EM P+ PD +TV ++++AC + +
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID-PDHITVGALMKACANAGQVDR 597
Query: 61 GMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK----DEVSYSAII- 115
EV+ + E +IK + + ++ G D+A ++ D+M K DEV +SA++
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 116 --------------------SGYMVHGFV---------------EKAMDLFQVMK----R 136
G + G V +KA++L++ +K R
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716
Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181
P +ST NA+I+ L + N+ L+++ EM+ G+ PN +T S +
Sbjct: 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 8e-12
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287
+ + +I Y G +A+ LFNEM GI+P+ T++ ++
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 67/335 (20%), Positives = 144/335 (42%), Gaps = 16/335 (4%)
Query: 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGM 62
K D + ++I+ ++ G + +F EM+N+ V + T +++ C ++ +
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAF 527
Query: 63 EVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS------DKDEVSYSAIIS 116
+ + ++K D + NALI + G++D A +L EM D D ++ A++
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587
Query: 117 GYMVHGFVEKAMDLFQVMKRPGL----STWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
G V++A +++Q++ + + ++ Q + L + +M+ GV+P
Sbjct: 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647
Query: 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVF 232
+ V S++ + H +L EI A K ++++ + A ++
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
Query: 233 DRFKGRSLI----IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288
+ K L A+I+A KA+ + +EM G+ P+ +T++ +L A
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767
Query: 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
D D+ + GI+P++ C+ G+ R
Sbjct: 768 DDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 23/199 (11%)
Query: 227 GAQRVFDRFKGRSL----IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282
GA RV + L ++T +IS A G +F+EM+N G++ + TF A++
Sbjct: 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514
Query: 283 SACAHSGLVDKAWDIFNAMSGQYGI------QPSVEHYACMVGVLSRARRISEATEFVSK 336
CA +G V KA+ G YGI +P + ++ ++ + A + +++
Sbjct: 515 DGCARAGQVAKAF-------GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567
Query: 337 M-----PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN-YIIMANLYSQA 390
M P+ P GAL+ + +G V+ K V + E + T Y I N SQ
Sbjct: 568 MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627
Query: 391 GRWDEADRVREQMKESGLA 409
G WD A + + MK+ G+
Sbjct: 628 GDWDFALSIYDDMKKKGVK 646
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS 182
P + T+N +I G + + E L L EM+ G++PN T S +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 106 KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS----TWNAVISGL 149
D V+Y+ +I GY G VE+A+ LF MK+ G+ T++ +I GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 3e-07
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323
PD VT+ ++ G V++A +FN M + GI+P+V Y+ ++ L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC 52
D+V++N++I GY + G EE LF EM + +P+ T ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI-KPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-06
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174
T+N +I GL + R E L+L +EM+ G+ P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 9e-06
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274
+ + +I G +A+ LF EM GI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGI 271
+ + ++IS Y G +A+ LF EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 80 CNALIGMYAKCGSLDYARALLDEMSDK----DEVSYSAIISGY 118
N LI Y K G ++ A L +EM + + +YS +I G
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 7 VSWNSMIAGYSQGGFYEECKALFREMLNS 35
V++NS+I+GY + G EE LF+EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 109 VSYSAIISGYMVHGFVEKAMDLFQVMKRPGL 139
V+Y+++ISGY G +E+A++LF+ MK G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 1e-04
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172
L T+NA++ L + + L ++ EM+ASG++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 140 STWNAVISGLVQNNRHEAVLDLVREMQASGV 170
T+N++ISG + + E L+L +EM+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 4e-04
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302
G++PD VT+ ++ +G VD+A ++ + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 8e-04
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273
L + A++ A A GD A+++ EM +G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 7 VSWNSMIAGYSQGGFYEECKALFREMLNS 35
V++N++I G + G EE LF+EM
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKER 29
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311
VT+ ++ +G V++A ++F M + GI+P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMK-ERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP 309
T+ A+L A A +G D A + M G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMK-ASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 468 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.45 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.39 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.39 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.36 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.31 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.3 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.25 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.04 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.04 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.92 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.88 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.86 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.82 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.8 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.78 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.78 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.75 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.69 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.67 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.54 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.54 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.51 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.5 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.47 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.47 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.45 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.45 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.4 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.34 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.3 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.27 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.23 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.2 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.2 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.19 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.19 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.14 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.12 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.07 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.05 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.98 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.97 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.92 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.91 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.9 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.9 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.89 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.89 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.88 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.85 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.81 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.81 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.81 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.8 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.77 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.75 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.75 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.74 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.72 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.7 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.68 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.66 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.65 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.65 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.62 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.6 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.6 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.59 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.58 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.57 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.55 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.54 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.5 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.46 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.45 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.45 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.44 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.38 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.38 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.36 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.34 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.34 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.3 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.28 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.26 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.26 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.24 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.22 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.19 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.17 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.15 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.13 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.08 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.07 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.01 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.96 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.75 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.74 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.74 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.7 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.65 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.53 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.44 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.43 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.37 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.35 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.29 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.19 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.19 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.14 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.05 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.02 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.9 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.88 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.82 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.78 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.68 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.66 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.59 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.55 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.53 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.48 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.42 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.4 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.39 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.27 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.25 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.13 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.09 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.07 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.02 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.99 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.97 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.97 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.97 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.95 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.94 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.94 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.93 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.83 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 94.76 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.74 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.73 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.69 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.55 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.53 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.5 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.39 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.36 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.36 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.14 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.93 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.91 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.89 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.81 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.75 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.72 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.69 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.58 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.38 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.26 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.25 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.06 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.93 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.85 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.79 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.5 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.19 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.01 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.0 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.0 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.93 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.84 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.63 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.62 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 91.57 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.57 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.56 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.54 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.53 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.51 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.46 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 91.33 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.95 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.81 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.69 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.66 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.61 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.06 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.53 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.47 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.22 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.18 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.11 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.96 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.83 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.73 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.58 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.53 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.5 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.4 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.19 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.08 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.03 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.82 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.76 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.61 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.42 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.14 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 86.76 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 86.52 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.5 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 86.2 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.19 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.34 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.21 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 85.11 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 85.02 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 84.36 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 84.32 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 84.3 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.82 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 83.81 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.62 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.62 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 83.23 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 82.83 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.57 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 82.34 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 82.31 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.15 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.06 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 81.23 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.92 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.88 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 80.31 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 80.09 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-73 Score=566.49 Aligned_cols=453 Identities=30% Similarity=0.513 Sum_probs=423.1
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
.||+.+||.|+.+|++.|++++|.++|++|. . ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ 229 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-E----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-C----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHH
Confidence 4677777777777777777777777777775 2 6777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCHHHHHHHHhhcC----CCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHH
Q 012234 83 LIGMYAKCGSLDYARALLDEMS----DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV 158 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 158 (468)
++.+|++.|+.+.+.+++..+. .+|..+|++|+.+|++.|++++|.++|+.|..+|+.+||.|+.+|++.|++++|
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Confidence 7777777777777777766554 368889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012234 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238 (468)
Q Consensus 159 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (468)
+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..++++|+.+|++.|++++|.++|++|.++
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHH
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 318 (468)
|..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred HHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 319 GVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..+++++.+..|++..+|..|+++|++.|++++|.+
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCcc
Q 012234 399 VREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDE 460 (468)
Q Consensus 399 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~ 460 (468)
++++|++.|+.+.|+++|+++.+.+|.|..++..||...+|+..+.++...|++.||+||++
T Consensus 550 v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 550 VVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999965
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-72 Score=573.18 Aligned_cols=457 Identities=37% Similarity=0.711 Sum_probs=429.5
Q ss_pred CCCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHH
Q 012234 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWIC 80 (468)
Q Consensus 1 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (468)
||.||+.+||++|.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 789999999999999999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhC--------------------------
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM-------------------------- 134 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-------------------------- 134 (468)
|.++.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|++++|+++|++|
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 999999999999999999999999888888888888888887777766666655
Q ss_pred --------------------------------------------CCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 012234 135 --------------------------------------------KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170 (468)
Q Consensus 135 --------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 170 (468)
.++|..+||.+|.+|.+.|+.++|+.+|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 334445566666666666666666666777764 58
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHH
Q 012234 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250 (468)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 250 (468)
.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|+++|++++|.++|+.+ .+|..+|+.+|.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHH
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 330 (468)
++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999997779999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 331 TEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
.+++++|+.+||..+|++|+.+|..+|+.+.++.+.+++.+++|+++..|..|.+.|++.|+|++|.++.+.|++.|+++
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCcc
Q 012234 411 IPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDE 460 (468)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~ 460 (468)
.||+||+++.+.+|.|..++..||...+|+..++++...|++.||+||++
T Consensus 725 ~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred CCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 99999999999999999999999999999999999999999999999965
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-61 Score=481.30 Aligned_cols=444 Identities=14% Similarity=0.167 Sum_probs=215.2
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHH
Q 012234 2 SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN 81 (468)
Q Consensus 2 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (468)
+.||..+||.||.+|++.|++++|.++|+.|. +.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+
T Consensus 433 ~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34444555555555555555555555555554 44444555555555555555555555555555555444444555555
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC----CCeehHHHHHHHHHhcCCHHHHHHHHhhCC------CCCHhHHHHHHHHHHh
Q 012234 82 ALIGMYAKCGSLDYARALLDEMSD----KDEVSYSAIISGYMVHGFVEKAMDLFQVMK------RPGLSTWNAVISGLVQ 151 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~ 151 (468)
.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|++|+.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 555555555555555555544432 344445555555555555555555554442 2444455555555555
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 012234 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 231 (468)
.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555555544444555555555555555555555555555555555455545555555555555555555555
Q ss_pred HhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCC
Q 012234 232 FDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307 (468)
Q Consensus 232 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (468)
|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... |+
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi 750 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GL 750 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CC
Confidence 544442 3344455555555555555555555555544444455555555555555555555555555544433 44
Q ss_pred CCCHhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHH----c-------------------CChHH
Q 012234 308 QPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASI----S-------------------GDVEL 361 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~----~-------------------g~~~~ 361 (468)
.||..+|+.++.+|++.|++++|.+++.+| +..||..+|+.++..|.+ . +..+.
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 455555555555555555555555554444 244444444444433221 0 01233
Q ss_pred HHHHHHHHHhhC-CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHH
Q 012234 362 GKFVCDHLFEIE-PENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIY 440 (468)
Q Consensus 362 a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (468)
|..+|++|.+.+ .|+..+|..++.++.+.+....+..+++.|...+..+....+. ..++.+ . +..
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~----~Li~g~----~------~~~ 896 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLS----TLVDGF----G------EYD 896 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhH----HHHHhh----c------cCh
Confidence 444444444443 3344444444444444444444444444443333322211111 111111 1 112
Q ss_pred HHHHHHHHHHHHcCCcCCcch
Q 012234 441 LILERLLGLMREEGYVLLDEV 461 (468)
Q Consensus 441 ~~~~~~~~~~~~~g~~p~~~~ 461 (468)
.++..+++.|...|+.|+..+
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCccc
Confidence 345689999999999999874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=492.44 Aligned_cols=408 Identities=28% Similarity=0.462 Sum_probs=379.1
Q ss_pred CCCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHH
Q 012234 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWIC 80 (468)
Q Consensus 1 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (468)
||+||+.+||++|.+|++.|++++|+++|++|. ..|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..++
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 789999999999999999999999999999999 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhc---------------------------------------
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH--------------------------------------- 121 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--------------------------------------- 121 (468)
|.++.+|++.|+++.|.++|++|.++|..+||++|.+|++.
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999988877666666666665554
Q ss_pred -------------------------------CCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 012234 122 -------------------------------GFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170 (468)
Q Consensus 122 -------------------------------~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 170 (468)
|++++|.++|++|..||..+||.+|.+|.+.|++++|+++|++|.+.|+
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 4555566666666667888899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHH
Q 012234 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAY 250 (468)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 250 (468)
.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.++.+|
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHH
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 330 (468)
++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+. |+.++..+++.|+++|++.|++++|
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHH
Confidence 999999999999999986 59999999999999999999999999999999977 9999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHcCChHHHHHHHHHHH-hCCC
Q 012234 331 TEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE-PENTGNYIIMANLYSQAGRWDEADRVREQMK-ESGL 408 (468)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~ 408 (468)
.++|+++ .||..+|++++.+|+++|+.++|.++|++|.+.+ .||..+|..++.+|.+.|++++|.++|+.|. +.|+
T Consensus 544 ~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 544 WNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 9999998 8999999999999999999999999999999875 5688999999999999999999999999999 6888
Q ss_pred CCCCc
Q 012234 409 AKIPG 413 (468)
Q Consensus 409 ~~~~~ 413 (468)
.|+..
T Consensus 622 ~P~~~ 626 (857)
T PLN03077 622 TPNLK 626 (857)
T ss_pred CCchH
Confidence 87654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=483.66 Aligned_cols=452 Identities=19% Similarity=0.265 Sum_probs=407.2
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCC-CCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHH
Q 012234 2 SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWIC 80 (468)
Q Consensus 2 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (468)
+.++...|..++..+++.|++++|+++|++|. ..+ ++++..+++.++.+|.+.|..+.|..+++.|.. ||..+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~-~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDME-KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 35778889999999999999999999999999 555 567888889999999999999999999998854 899999
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC----CCeehHHHHHHHHHhcCCHHHHHHHHhhCCC----CCHhHHHHHHHHHHhC
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSD----KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWNAVISGLVQN 152 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~ 152 (468)
+.++.+|++.|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999975 7899999999999999999999999999984 8999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHH--cCCCCchhHHHHHHHHHHhcCChHHHHH
Q 012234 153 NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK--NRYDRNIYVATAIIDTYAKTGFLHGAQR 230 (468)
Q Consensus 153 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 230 (468)
|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.. .++.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 6789999999999999999999999999
Q ss_pred HHhhccCC----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 231 VFDRFKGR----SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 231 ~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
+|+.|.+. +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. |
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G 679 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-G 679 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 99999864 558999999999999999999999999999999999999999999999999999999999999977 9
Q ss_pred CCCCHhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHH
Q 012234 307 IQPSVEHYACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE-PENTGNYII 382 (468)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~ 382 (468)
+.|+..+|+.|+.+|++.|++++|.++|++| +..||..+|+.|+.+|++.|++++|.++|++|.+.+ .+|..+|..
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999999998 378999999999999999999999999999998875 678899999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEEC-------------CEEEEEEeCCCCCCCh-HHHHHHHHHHHH
Q 012234 383 MANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECS-------------GGLQSFVAKDTSGDKS-EQIYLILERLLG 448 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 448 (468)
++.+|.+.|++++|.+++++|++.|+.|+.......+. .....|- ..++.. ..-...+..+++
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~---~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFD---SGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---ccccccccchHHHHHHHHH
Confidence 99999999999999999999999999987643322110 0111111 001110 011234668999
Q ss_pred HHHHcCCcCCcchh
Q 012234 449 LMREEGYVLLDEVE 462 (468)
Q Consensus 449 ~~~~~g~~p~~~~~ 462 (468)
.|++.|++||..+.
T Consensus 837 eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 837 ETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHCCCCCCHHHH
Confidence 99999999997664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-56 Score=440.49 Aligned_cols=392 Identities=20% Similarity=0.254 Sum_probs=363.1
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
+++..+|+.+|.++.+.|++++|+++|+.|....++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34566999999999999999999999999984455789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC----CCHhHHHHHHHHHHhCCChHHH
Q 012234 83 LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWNAVISGLVQNNRHEAV 158 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a 158 (468)
++.+|++.|+++.|.++|++|.+||..+|++++.+|++.|++++|.++|++|.+ |+..+|+.++.++.+.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999964 8889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcc--
Q 012234 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK-- 236 (468)
Q Consensus 159 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 236 (468)
.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|+.++|.++|++|.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999885 4688999999999999999999999999985
Q ss_pred --CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHH
Q 012234 237 --GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314 (468)
Q Consensus 237 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 314 (468)
.+|..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~ 394 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISW 394 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeH
Confidence 478889999999999999999999999999999999999999999999999999999999999986 4788999
Q ss_pred HHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHH
Q 012234 315 ACMVGVLSRARRISEATEFVSKM---PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEI--EPENTGNYIIMANLYSQ 389 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 389 (468)
+.|+.+|++.|+.++|.++|++| +..||..||+.++.+|.+.|++++|.++|+.|.+. ..++..+|..++++|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 99999999999999999999998 48899999999999999999999999999999864 25577899999999999
Q ss_pred cCChHHHHHHHHHH
Q 012234 390 AGRWDEADRVREQM 403 (468)
Q Consensus 390 ~g~~~~A~~~~~~m 403 (468)
.|++++|.+++++|
T Consensus 475 ~G~~~eA~~~~~~~ 488 (697)
T PLN03081 475 EGLLDEAYAMIRRA 488 (697)
T ss_pred cCCHHHHHHHHHHC
Confidence 99999999998765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-28 Score=249.82 Aligned_cols=395 Identities=13% Similarity=0.092 Sum_probs=326.5
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNAL 83 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (468)
++..+|+.+...+...|++++|.+.|+++. ... +.+...+..+...+...|++++|.+.++.+.+.++ .+..++..+
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 539 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKAL-SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILAL 539 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHH-hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence 466789999999999999999999999998 432 44566777888889999999999999999988764 377888889
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHH
Q 012234 84 IGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEA 157 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 157 (468)
...+.+.|+.++|...|+++.+. +...+..++..+...|++++|..+++.+.+ .+...|..+..++...|++++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988642 456778888999999999999999988864 456788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC
Q 012234 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237 (468)
Q Consensus 158 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (468)
|+..++++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..++..+...|++++|..+++.+.+
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999988763 4456677888888999999999999999888764 45567788888899999999999999988875
Q ss_pred C---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHH
Q 012234 238 R---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314 (468)
Q Consensus 238 ~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 314 (468)
. +...+..+...+...|++++|...|+++...+ |+..++..+..++...|++++|...++++.+. .+.+...+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~ 773 (899)
T TIGR02917 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLR 773 (899)
T ss_pred hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 3 44567778888888999999999998888763 45566777888888889999999888888763 34567788
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 315 ACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
..+...|...|++++|.+.|+++. .++++.+++.+...+...|+ .+|+..++++.+..|+++..+..++.+|...|+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 888888888899999998888873 34567788888888888888 778888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhCCC
Q 012234 393 WDEADRVREQMKESGL 408 (468)
Q Consensus 393 ~~~A~~~~~~m~~~~~ 408 (468)
+++|.++++++.+.+.
T Consensus 853 ~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 853 ADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 8888888888887664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=248.57 Aligned_cols=392 Identities=11% Similarity=0.012 Sum_probs=338.9
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
...+..++..+.+.|++++|+++++.+. .. .+++..++..+...+...|++++|.+.|+++.+..+ .+...+..+..
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 507 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLE-KK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLAR 507 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHH-Hh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHH
Confidence 4556778889999999999999999998 33 356778899999999999999999999999988764 36667788899
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHH
Q 012234 86 MYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVL 159 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 159 (468)
.+...|++++|.+.|+++.+ .+..++..+...+.+.|+.++|...|+++.. .+...+..++..+...|++++|.
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998865 3566888899999999999999999998854 44567888899999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--
Q 012234 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-- 237 (468)
Q Consensus 160 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 237 (468)
.+++.+.... +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...|+++.+
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999998753 5677788999999999999999999999998865 45667788899999999999999999998765
Q ss_pred -CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHH
Q 012234 238 -RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC 316 (468)
Q Consensus 238 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 316 (468)
.+..++..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~ 741 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIK 741 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHH
Confidence 345688889999999999999999999998874 456777888889999999999999999998854 566677888
Q ss_pred HHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChH
Q 012234 317 MVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (468)
+...+.+.|++++|.+.++++. .+.+...+..+...|...|+.++|.+.|+++.+..|+++.++..++.++...|+ .
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 8999999999999999998872 455688889999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHhCC
Q 012234 395 EADRVREQMKESG 407 (468)
Q Consensus 395 ~A~~~~~~m~~~~ 407 (468)
+|+.+++++.+..
T Consensus 821 ~A~~~~~~~~~~~ 833 (899)
T TIGR02917 821 RALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHHhhC
Confidence 8999999988753
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-23 Score=187.65 Aligned_cols=378 Identities=13% Similarity=0.160 Sum_probs=323.2
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchH-HHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLW-ICNALI 84 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 84 (468)
..+|..+...+-..|++++|+.+++.+. +.. +-....|..+..++...|+.+.|.+.|.+.++.+ |+.. ....+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~ai-el~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAI-ELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHH-hcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 3578889999999999999999999998 532 3457789999999999999999999999998865 4433 334455
Q ss_pred HHHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCH---hHHHHHHHHHHhCCChHHH
Q 012234 85 GMYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGL---STWNAVISGLVQNNRHEAV 158 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a 158 (468)
..+-..|++++|...|.+..+ | -...|+.|.-.+-.+|+...|+..|++..+.|+ ..|-.|...|...+.+++|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 566678999999999988765 3 367899999999999999999999999987443 4788999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC
Q 012234 159 LDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237 (468)
Q Consensus 159 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (468)
+..|.+.... .|+ ...+..+...|...|.++.|...|++.++.. +.-+..|+.|..++-..|+..+|.+.|.+...
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998775 555 4567777788899999999999999999875 33467899999999999999999999998775
Q ss_pred ---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-Hh
Q 012234 238 ---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-VE 312 (468)
Q Consensus 238 ---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~ 312 (468)
....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-..|++++|...+++.. .+.|+ ..
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd 423 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD 423 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence 3446889999999999999999999999877 4555 4578889999999999999999999998 67886 57
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc
Q 012234 313 HYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA 390 (468)
Q Consensus 313 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (468)
.|+.+...|...|+.+.|+..+.+. .+.|. ...++.|...|...|++.+|+..++.++++.|+.+.+|..++.++.-.
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 8999999999999999999999887 46675 678899999999999999999999999999999999999999887766
Q ss_pred CChHH
Q 012234 391 GRWDE 395 (468)
Q Consensus 391 g~~~~ 395 (468)
.+|.+
T Consensus 504 cdw~D 508 (966)
T KOG4626|consen 504 CDWTD 508 (966)
T ss_pred hcccc
Confidence 66554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-21 Score=190.21 Aligned_cols=390 Identities=13% Similarity=0.042 Sum_probs=292.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 012234 9 WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA 88 (468)
Q Consensus 9 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 88 (468)
+......+.+.|++++|+..|++.. . +.|+...|..+..++...|++++|+..++..++..+. +...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al-~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-E--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-h--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 5567778889999999999999998 5 3578888999999999999999999999999987643 6778888999999
Q ss_pred hCCCHHHHHHHHhhcCCCC---eehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-------------------------
Q 012234 89 KCGSLDYARALLDEMSDKD---EVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG------------------------- 138 (468)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~------------------------- 138 (468)
..|++++|+..|......+ ......++..+........+...++.-.. +.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999998776543211 11111111111111111222222221111 00
Q ss_pred --H---hHHHHHHHH---HHhCCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCc
Q 012234 139 --L---STWNAVISG---LVQNNRHEAVLDLVREMQASG-VRP-NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN 208 (468)
Q Consensus 139 --~---~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 208 (468)
. ..+..+... ....+++++|++.|++..+.+ ..| ....+..+...+...|++++|...++...+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 0 001111111 122468999999999998764 233 34567778888899999999999999999864 334
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (468)
...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 56778888999999999999999998765 345788999999999999999999999998863 33567777888899
Q ss_pred hccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHHc
Q 012234 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSA-K-------VWGALLYGASIS 356 (468)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~ 356 (468)
.+.|++++|+..|++..+. .+.+...++.+...+...|++++|++.|++. ...|+. . .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999999863 2445788899999999999999999999986 333321 1 112222233446
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|++++|.+.++++.+.+|++..++..++.++.+.|++++|++.+++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-20 Score=195.90 Aligned_cols=386 Identities=11% Similarity=0.023 Sum_probs=260.4
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch-HHH-----------
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDL-WIC----------- 80 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~----------- 80 (468)
...+...|++++|+..|++.. ... +.+...+..+..++.+.|++++|...|++.++..+.... ..+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL-~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAV-RAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 344555666666666666665 321 234555555666666666666666666666554432111 111
Q ss_pred -HHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhH------------
Q 012234 81 -NALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG-LST------------ 141 (468)
Q Consensus 81 -~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~------------ 141 (468)
......+.+.|++++|+..|++..+. +...+..+...+...|++++|++.|++..+ |+ ...
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 11233445566666666666655432 333455555566666666666666655543 21 112
Q ss_pred ------------------------------HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 012234 142 ------------------------------WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK 191 (468)
Q Consensus 142 ------------------------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 191 (468)
+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2233445667788888888888887753 224456667778888888888
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC----c---------chHHHHHHHHHHcCChHH
Q 012234 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS----L---------IIWTAIISAYAAHGDASK 258 (468)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~g~~~~ 258 (468)
+|...++.+.+.. +.+...+..+...+...++.++|+..++.+.... . ..+..+...+...|++++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 8888888887654 3344444445556677888888888888775421 1 112234567788899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC
Q 012234 259 AVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338 (468)
Q Consensus 259 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 338 (468)
|..+++. .+++...+..+...+.+.|++++|...|+++.+. -+.+...+..++..|...|++++|++.++.+.
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9988872 2445667778889999999999999999999864 23467888999999999999999999999874
Q ss_pred -CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHh-CCCC
Q 012234 339 -VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT------GNYIIMANLYSQAGRWDEADRVREQMKE-SGLA 409 (468)
Q Consensus 339 -~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~ 409 (468)
..| +...+..+..++...|++++|.+.++++....|+++ .++..++..+...|++++|+..+++... .|+.
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 344 466777888899999999999999999998866544 3566779999999999999999988854 3443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=182.54 Aligned_cols=297 Identities=14% Similarity=0.107 Sum_probs=192.5
Q ss_pred HHHhCCCHHHHHHHHhhcCCCC---eehHHHHHHHHHhcCCHHHHHHHHhhCCC-CC------HhHHHHHHHHHHhCCCh
Q 012234 86 MYAKCGSLDYARALLDEMSDKD---EVSYSAIISGYMVHGFVEKAMDLFQVMKR-PG------LSTWNAVISGLVQNNRH 155 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~g~~ 155 (468)
.+...|++++|...|+++.+.+ ..++..+...+...|++++|..+++.+.. ++ ...+..++..|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 4455666666666666665422 22444455555555555555555554433 11 12344444555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhc
Q 012234 156 EAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235 (468)
Q Consensus 156 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 235 (468)
++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 55555555554431 22333444444444444444444444444443321110000
Q ss_pred cCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC--HhH
Q 012234 236 KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS--VEH 313 (468)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~ 313 (468)
....+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.++++++... .|+ ..+
T Consensus 179 ---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~ 251 (389)
T PRK11788 179 ---IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEV 251 (389)
T ss_pred ---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHH
Confidence 00124456667788889999999998887753 234557777888899999999999999998854 343 456
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH---
Q 012234 314 YACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ--- 389 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 389 (468)
+..++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|...++++.+..|++. .+..+...+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccC
Confidence 788889999999999999999887 3567777778889999999999999999999999988765 55555555553
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcee
Q 012234 390 AGRWDEADRVREQMKESGLAKIPGRS 415 (468)
Q Consensus 390 ~g~~~~A~~~~~~m~~~~~~~~~~~~ 415 (468)
.|+.+++..++++|.++++.++|...
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCCEE
Confidence 56999999999999999999888743
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-20 Score=196.46 Aligned_cols=389 Identities=11% Similarity=0.055 Sum_probs=260.7
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (468)
.+...+..+-.......|...+..+. .....|+.. .......+...|++++|...|++.++..+. +...+..+..++
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~-~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~ 313 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQ-KQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAY 313 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHH-HhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 45555665555556778888888775 322123322 123455677899999999999999998643 788899999999
Q ss_pred HhCCCHHHHHHHHhhcCC--CCe---ehHH------------HHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHH
Q 012234 88 AKCGSLDYARALLDEMSD--KDE---VSYS------------AIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVIS 147 (468)
Q Consensus 88 ~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 147 (468)
.+.|++++|+..|++..+ |+. ..|. .....+.+.|++++|+..|+++.+ .+...+..+..
T Consensus 314 ~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~ 393 (1157)
T PRK11447 314 SQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGD 393 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999998875 321 1121 224567899999999999999875 34567888899
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------------------------------------------H
Q 012234 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF------------------------------------------S 185 (468)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~------------------------------------------~ 185 (468)
.+...|++++|++.|++..+.. +.+...+..+...+ .
T Consensus 394 ~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~ 472 (1157)
T PRK11447 394 VAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE 472 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999999998753 22333443343333 2
Q ss_pred ccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSL 262 (468)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (468)
..|++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+ .++..+..+...+...+++++|+..
T Consensus 473 ~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3455555555555555443 22333444455555555555555555555432 1222333333334445555555555
Q ss_pred HHHHHHCCCCCCHH---------HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHH
Q 012234 263 FNEMLNNGIQPDPV---------TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333 (468)
Q Consensus 263 ~~~m~~~~~~p~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 333 (468)
++.+......++.. .+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|++.
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 54432211111111 112234455666777777766651 134555667788888899999999999
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 334 VSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 334 ~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
|+++. ..| +...+..++..+...|++++|+..++++.+..|+++.++..++.++...|++++|.++++++....
T Consensus 626 y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 626 YQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88873 344 577888888899999999999999998888888888888889999999999999999999887754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-22 Score=177.61 Aligned_cols=389 Identities=13% Similarity=0.115 Sum_probs=315.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCC--------------------------------CCCCcchHHHHHHHhhccCC
Q 012234 10 NSMIAGYSQGGFYEECKALFREMLNSPV--------------------------------LRPDGVTVVSVLQACGQSSD 57 (468)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~~~--------------------------------~~~~~~~~~~l~~~~~~~~~ 57 (468)
..|..-.-+.|++++|++.-...-++.. .+.-..+|..+...+-..|+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 4455666777888888876554432211 11224567777777778888
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeeh---HHHHHHHHHhcCCHHHHHHHHhhC
Q 012234 58 IVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS---YSAIISGYMVHGFVEKAMDLFQVM 134 (468)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~~ 134 (468)
+++|+..++.+++..+. ....|..+..++...|+.+.|.+.|.+..+-++.. .+.+...+-..|++++|...+.+.
T Consensus 132 ~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 88888888888887643 67778888888888888888888888777644432 233445555678888888888776
Q ss_pred CC--CCH-hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchh
Q 012234 135 KR--PGL-STWNAVISGLVQNNRHEAVLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210 (468)
Q Consensus 135 ~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 210 (468)
.+ |.- ..|+.|...+-.+|+...|+..|++.... .|+ ...|..|...|...+.++.|...|..+.... +....
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 64 432 46888889999999999999999998875 454 3578889999999999999999998888764 34456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACA 286 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 286 (468)
++..+...|-..|.++.|+..|++..+.++ .+|+.|..++-..|++.+|...+.+.... .|+ ....+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 677788889999999999999999876433 68999999999999999999999998875 444 567888999999
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHH
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~ 363 (468)
..|.++.|..+|....+ +.|. ...++.|...|...|++++|+..|++. +++|+ ...++.+...|-..|+...|+
T Consensus 366 E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 99999999999999884 4564 567899999999999999999999987 58887 679999999999999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+.+.++...+|.-..++..|+..|...|+..+|+.-++...+..
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999987754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-21 Score=179.89 Aligned_cols=280 Identities=11% Similarity=0.153 Sum_probs=182.5
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC-------eehHHHHHHHHHhcCC
Q 012234 51 ACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD-------EVSYSAIISGYMVHGF 123 (468)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~ 123 (468)
.+...|+++.|...|.++.+.++ .+..++..+...+...|++++|..+++.+.... ...+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34555667777777777766543 245566666667777777777777776655421 1345666666777777
Q ss_pred HHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhhHHHH
Q 012234 124 VEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA----VTISSIFSLFSHFSNLKGGKEI 196 (468)
Q Consensus 124 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~ 196 (468)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+...+..+.. ..+..+...+...|++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777777776654 34556777777777777777777777777665422221 1334556666677777777777
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc----chHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012234 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL----IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272 (468)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 272 (468)
++++.+.. +.+...+..+...+.+.|++++|..+|+++.+.++ .+++.++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 77776654 33345566667777777777777777777664222 34566777777777777777777777664 4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc---cCChHHHHHHHHhC
Q 012234 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR---ARRISEATEFVSKM 337 (468)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 337 (468)
|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 55555566777777777777777777777643 5776677766666553 44677777777665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-19 Score=177.00 Aligned_cols=373 Identities=12% Similarity=0.049 Sum_probs=281.8
Q ss_pred HhcCCChhHHHHHHHHhhhCCC-CCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Q 012234 16 YSQGGFYEECKALFREMLNSPV-LRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD 94 (468)
Q Consensus 16 ~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 94 (468)
+.++.+|+.---.|.....+.. -..+......++..+.+.|+++.|..+++..+...+. +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 4456666665555544431110 0123344666777888999999999999999888765 4555556667778899999
Q ss_pred HHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 012234 95 YARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168 (468)
Q Consensus 95 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 168 (468)
.|...|+++.+ | +...+..+...+...|++++|...|++... | +...+..+...+...|++++|...++.+...
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999999875 3 456788888999999999999999998875 3 4567888899999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHH
Q 012234 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTA 245 (468)
Q Consensus 169 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 245 (468)
.. .+...+.. +..+...|++++|...++.+.+....++......+...+...|++++|...+++.... +...+..
T Consensus 174 ~P-~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VP-PRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CC-CCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 32 22223323 3347888999999999999887654444445555677888999999999999987753 4567788
Q ss_pred HHHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHH
Q 012234 246 IISAYAAHGDASK----AVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGV 320 (468)
Q Consensus 246 l~~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 320 (468)
+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...++++... .| +...+..+...
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 8899999999986 799999988752 335678888899999999999999999998854 44 45677778899
Q ss_pred HhccCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 321 LSRARRISEATEFVSKMP-VKPSAK-VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 321 ~~~~~~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
+.+.|++++|+..++++. ..|+.. .+..+..++...|+.++|...|+++.+..|.+. ..++++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 999999999999998873 456543 344456778899999999999999999988764 234456666
Q ss_pred HHHHHHhCC
Q 012234 399 VREQMKESG 407 (468)
Q Consensus 399 ~~~~m~~~~ 407 (468)
.+.+..+.-
T Consensus 396 ~~~~~~~~~ 404 (656)
T PRK15174 396 ALDGQISAV 404 (656)
T ss_pred HHHHHHHhc
Confidence 666665543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-18 Score=174.69 Aligned_cols=391 Identities=10% Similarity=0.015 Sum_probs=298.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 012234 10 NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89 (468)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (468)
.-.+.+....|+.++|++++.... ... +.+...+..+..++...|++++|..++++.++..+. +...+..++.++..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~-~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYR-VHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 345666777999999999999997 322 345556889999999999999999999999987533 56677789999999
Q ss_pred CCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHH
Q 012234 90 CGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVR 163 (468)
Q Consensus 90 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 163 (468)
.|+.++|+..+++..+ | +.. +..+...+...|+.++|+..++++.+ | +...+..+...+...|..++|+..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999875 3 455 88888899999999999999999876 4 44566778888889999999999998
Q ss_pred HHHHCCCCCCH------HHHHHHHHHHH-----ccCCh---hhHHHHHHHHHHc-CCCCchh-HHH----HHHHHHHhcC
Q 012234 164 EMQASGVRPNA------VTISSIFSLFS-----HFSNL---KGGKEIHGYAVKN-RYDRNIY-VAT----AIIDTYAKTG 223 (468)
Q Consensus 164 ~m~~~~~~p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g 223 (468)
.... .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+. ..+..+...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 6653 3332 01112222221 11233 6788888888864 2233221 111 1133456779
Q ss_pred ChHHHHHHHhhccCCC---cc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHH
Q 012234 224 FLHGAQRVFDRFKGRS---LI-IWTAIISAYAAHGDASKAVSLFNEMLNNGIQP---DPVTFTAVLSACAHSGLVDKAWD 296 (468)
Q Consensus 224 ~~~~a~~~~~~~~~~~---~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~ 296 (468)
++++|+..|+.+.+.+ +. ....+..+|...|++++|+.+|+++....... .......+..++...|++++|..
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999988743 21 22335778999999999999999987643111 12445666778899999999999
Q ss_pred HHHHhhhhcC----------CCCC---HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHH
Q 012234 297 IFNAMSGQYG----------IQPS---VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 297 ~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 361 (468)
+++.+..... -.|+ ...+..+...+...|+.++|++.++++. .+.+...+..+...+...|++++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 9999885310 0122 2345567788899999999999999973 34468899999999999999999
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
|++.++++.+..|+++..+..++..+...|++++|..+++++++..
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-19 Score=173.11 Aligned_cols=319 Identities=12% Similarity=0.040 Sum_probs=260.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 012234 10 NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89 (468)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (468)
-.++..+.++|++++|+.+++... ... +-+...+..++.+....|+++.|...++++.+..+. +...+..+...+..
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l-~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRV-LTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHH-HhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 345677889999999999999998 432 344556667777778899999999999999998744 67788889999999
Q ss_pred CCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCH-hHHHHHHHHHHhCCChHHHHHHHH
Q 012234 90 CGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGL-STWNAVISGLVQNNRHEAVLDLVR 163 (468)
Q Consensus 90 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 163 (468)
.|++++|...|++... | +...+..+...+...|++++|...++.+.. |+. ..+..+ ..+...|++++|...++
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 9999999999999876 3 466888999999999999999999987643 333 334333 45888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH----HHHHHhhccC--
Q 012234 164 EMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG----AQRVFDRFKG-- 237 (468)
Q Consensus 164 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~-- 237 (468)
.+......++......+..++...|++++|...+..+.+.. +.+...+..+...|...|++++ |...|++..+
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 98876433445555666778899999999999999999875 4567778889999999999986 7999998775
Q ss_pred -CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH-hHHH
Q 012234 238 -RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV-EHYA 315 (468)
Q Consensus 238 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~ 315 (468)
.+..++..+...+...|++++|...+++..... +.+...+..+..++...|++++|...++++... .|+. ..+.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~ 356 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNR 356 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHH
Confidence 344688899999999999999999999998863 234566777889999999999999999999854 4554 3344
Q ss_pred HHHHHHhccCChHHHHHHHHhC
Q 012234 316 CMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 316 ~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
.+..++...|+.++|.+.|++.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4567889999999999999987
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-17 Score=164.72 Aligned_cols=368 Identities=10% Similarity=0.025 Sum_probs=282.1
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
...+..+...+.+.|++++|+++|++.. ... |.+...+..+...+...|++++|...++++++..+. +.. +..+..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~ 124 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKAL-SLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAY 124 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHH
Confidence 4458999999999999999999999988 432 455667778888899999999999999999988543 566 888999
Q ss_pred HHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC-CCH------hHHHHHHHHHH-----
Q 012234 86 MYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR-PGL------STWNAVISGLV----- 150 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~----- 150 (468)
++...|+.++|+..++++.+ | +...+..+...+...|..++|+..++.... |+. .....++....
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 99999999999999999876 3 455667788888899999999999998776 221 11222333332
Q ss_pred hCCCh---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHccCChhhHHHHHHHHHHcCCC-CchhHHHHHHHHHH
Q 012234 151 QNNRH---EAVLDLVREMQAS-GVRPNAV-TIS----SIFSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYA 220 (468)
Q Consensus 151 ~~g~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 220 (468)
..+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+ .....+..+|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHH
Confidence 22334 7889999998854 2233321 111 1133456779999999999999987632 22 22333677899
Q ss_pred hcCChHHHHHHHhhccCCCc-------chHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH---HHHH
Q 012234 221 KTGFLHGAQRVFDRFKGRSL-------IIWTAIISAYAAHGDASKAVSLFNEMLNNGI-----------QPDP---VTFT 279 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~ 279 (468)
..|++++|+..|+++.+.++ .....+..++...|++++|..+++.+..... .|+. ..+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 99999999999999865332 2355566688999999999999999987521 1332 2455
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcC
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS-AKVWGALLYGASISG 357 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g 357 (468)
.+...+...|+.++|+..++++... .+.+...+..+...+...|++++|++.+++.. ..|+ ...+..++..+...|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 6777888999999999999999864 34467888899999999999999999999883 5565 677778888899999
Q ss_pred ChHHHHHHHHHHHhhCCCCcchH
Q 012234 358 DVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
++++|+.+++++++..|+++.+.
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999987544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-16 Score=159.53 Aligned_cols=392 Identities=13% Similarity=0.069 Sum_probs=268.8
Q ss_pred CCCCcchHHHH-HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhc-cCChHHHHHHHHHHHHhCCCCchHH
Q 012234 2 SKRDIVSWNSM-IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIVFGMEVHNFVIESHIKMDLWI 79 (468)
Q Consensus 2 ~~p~~~~y~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (468)
|+|+..+.... ...|.+.|++++|+++++++. +.+ +.+..-...+..++.. .++ +.+..++.. .+.-+...
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~-k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l 249 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR-QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQS 249 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHH
Confidence 34445544444 889999999999999999998 544 3344445666667766 366 777777543 23357888
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC-----CCeehH------------------------------HHHHHHHHhcCCH
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSD-----KDEVSY------------------------------SAIISGYMVHGFV 124 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~------------------------------~~li~~~~~~~~~ 124 (468)
...++..|.+.|+.++|.++++++.. |...+| -.++..+.+.+++
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQY 329 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHH
Confidence 88999999999999999999998863 111111 1123444555555
Q ss_pred HHHHHHHhhCCC-------------------------------C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHC----
Q 012234 125 EKAMDLFQVMKR-------------------------------P-GLSTWNAVISGLVQNNRHEAVLDLVREMQAS---- 168 (468)
Q Consensus 125 ~~A~~~~~~~~~-------------------------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---- 168 (468)
+.+.++...-+. | +.....-+.-...+.|+.++|.++|+.....
T Consensus 330 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 330 DAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred HHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 544444221110 0 0001111111223344444444444443320
Q ss_pred -----------------------------------------------------------CC-CC--CHHHHHHHHHHHHc
Q 012234 169 -----------------------------------------------------------GV-RP--NAVTISSIFSLFSH 186 (468)
Q Consensus 169 -----------------------------------------------------------~~-~p--~~~~~~~l~~~~~~ 186 (468)
+. ++ +...+..+..++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 00 12 33444445544544
Q ss_pred cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--CCcchHHHHHHHHHHcCChHHHHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIWTAIISAYAAHGDASKAVSLFN 264 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (468)
++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+..++.+.|++++|...++
T Consensus 490 -~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred -CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66667777676666543 4444444445555689999999999987764 334456677778889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-C
Q 012234 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-S 342 (468)
Q Consensus 265 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~ 342 (468)
+..+.. +++...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++|+..+++.. ..| +
T Consensus 567 qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~ 642 (987)
T PRK09782 567 QAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN 642 (987)
T ss_pred HHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 988764 223333334444555669999999999999843 6788889999999999999999999999883 455 5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
...++.+..++...|++++|+..++++.+..|+++.++..++.++...|++++|...+++..+..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 77888899999999999999999999999999999999999999999999999999999998754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-17 Score=159.67 Aligned_cols=365 Identities=11% Similarity=-0.004 Sum_probs=268.2
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
.|+...|..+..+|.+.|++++|++.++... ... +.+...|..+..++...|++++|...+..+...+...+... ..
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al-~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~-~~ 233 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAAL-ELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS-AQ 233 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH-HH
Confidence 4677789999999999999999999999998 533 34566888899999999999999988876655432222211 11
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC-----------------------------CC---eehHHHHHHHH---HhcCCHHHH
Q 012234 83 LIGMYAKCGSLDYARALLDEMSD-----------------------------KD---EVSYSAIISGY---MVHGFVEKA 127 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~-----------------------------~~---~~~~~~li~~~---~~~~~~~~A 127 (468)
++.-+........+...++.-.. .+ ...+..+...+ ...+++++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 11111111111122222211110 00 01111111111 224678999
Q ss_pred HHHHhhCCC-----C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHH
Q 012234 128 MDLFQVMKR-----P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYA 200 (468)
Q Consensus 128 ~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 200 (468)
.+.|+.... | ....|+.+...+...|++++|+..+++.++. .|+ ...|..+...+...|++++|...++.+
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998764 2 3346888888999999999999999999876 444 557888889999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 012234 201 VKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277 (468)
Q Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 277 (468)
.+.. +.+..++..+...+...|++++|...|++..+. +...+..+..++.+.|++++|+..|++.... .+.+...
T Consensus 392 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~ 469 (615)
T TIGR00990 392 LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDV 469 (615)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHH
Confidence 8875 455778888999999999999999999998763 4467778888999999999999999999875 2335778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH-h-------HHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHH
Q 012234 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV-E-------HYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWG 347 (468)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~ 347 (468)
++.+...+...|++++|...|++.... .|+. . .++.....+...|++++|.+++++. ...|+ ...+.
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 888999999999999999999998753 3321 1 1222233344579999999999986 44554 56788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
.+...+...|++++|+..|+++.++.+...
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 899999999999999999999999876533
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-16 Score=154.19 Aligned_cols=387 Identities=12% Similarity=0.037 Sum_probs=280.8
Q ss_pred HHhcCCChhHHHHHHHHhhhCCCCCCCcc-hHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 012234 15 GYSQGGFYEECKALFREMLNSPVLRPDGV-TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93 (468)
Q Consensus 15 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 93 (468)
...++|+++.|++.|++.. +. .|+.. ....++..+...|+.++|+..+++..... .........+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL-~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEES-KA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHH-hh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 3467899999999999998 43 35542 22377788888899999999999988221 22333444446788899999
Q ss_pred HHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 012234 94 DYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168 (468)
Q Consensus 94 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 168 (468)
++|+++|+++.+. ++..+..++..+...++.++|++.++++.. |+...+..++..+...++..+|++.++++.+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999999863 456677788889999999999999999986 55445544444444466776799999999887
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHH------------------------------------------------HHHH
Q 012234 169 GVRPNAVTISSIFSLFSHFSNLKGGKEI------------------------------------------------HGYA 200 (468)
Q Consensus 169 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~------------------------------------------------~~~~ 200 (468)
. +.+...+..+..++.+.|-...|.++ ++.+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 33444555555555555443333322 2222
Q ss_pred HHc-CCCCc-hhHH----HHHHHHHHhcCChHHHHHHHhhccCCC--c--chHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012234 201 VKN-RYDRN-IYVA----TAIIDTYAKTGFLHGAQRVFDRFKGRS--L--IIWTAIISAYAAHGDASKAVSLFNEMLNNG 270 (468)
Q Consensus 201 ~~~-~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~--~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 270 (468)
... +..|. ...+ .-.+-++...|++.++++.|+.+.... + .+-..+..+|...+++++|..+++++....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 221 11121 1111 123456677889999999999998543 2 355667889999999999999999986642
Q ss_pred -----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC----------CCCC---HhHHHHHHHHHhccCChHHHHH
Q 012234 271 -----IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG----------IQPS---VEHYACMVGVLSRARRISEATE 332 (468)
Q Consensus 271 -----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~~~~~~A~~ 332 (468)
..++......|.-++..++++++|..+++.+.+... -.|+ ...+..++..+...|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122333456788899999999999999999886311 0122 2234456777889999999999
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 333 FVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 333 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.++++. .+-|......+...+...|.+.+|++.++.+....|++..+...++.++...|+|++|..+.+.+...
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999883 45578899999999999999999999999988899999999999999999999999999888777554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-15 Score=150.91 Aligned_cols=394 Identities=12% Similarity=0.027 Sum_probs=287.9
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHH------------------------------HHhh
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVL------------------------------QACG 53 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~------------------------------~~~~ 53 (468)
-|+..+..+...|.+.|+.++|.++++++.....-.|...+|...+ ..+.
T Consensus 245 ~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 245 TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLL 324 (987)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 4667788999999999999999999999873222224333332222 2222
Q ss_pred ccCChHHHHHH-----------------------------HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 012234 54 QSSDIVFGMEV-----------------------------HNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMS 104 (468)
Q Consensus 54 ~~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 104 (468)
+.+.++.+.++ +..|.+.. +-+.....-+.-.....|+.++|.++|+...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~ 403 (987)
T PRK09782 325 KEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRY 403 (987)
T ss_pred hccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 33333333322 22222221 1133344444455667889999999999876
Q ss_pred C-C-C----eehHHHHHHHHHhcCC---HHHHHHH-------------------------HhhCCC---C--CHhHHHHH
Q 012234 105 D-K-D----EVSYSAIISGYMVHGF---VEKAMDL-------------------------FQVMKR---P--GLSTWNAV 145 (468)
Q Consensus 105 ~-~-~----~~~~~~li~~~~~~~~---~~~A~~~-------------------------~~~~~~---~--~~~~~~~l 145 (468)
. + + ...-..++..|.+.+. ..++..+ +..... + +...|..+
T Consensus 404 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~L 483 (987)
T PRK09782 404 PFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRL 483 (987)
T ss_pred CCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHH
Confidence 6 2 2 2234466777777665 3333333 111111 2 45677888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
..++.. +++++|+..+.+.... .|+......+...+...|++++|...++.+... +|+...+..+..++.+.|+.
T Consensus 484 G~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~ 558 (987)
T PRK09782 484 AKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNG 558 (987)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCH
Confidence 877776 8999999988888765 577655445556667999999999999987654 34445566778889999999
Q ss_pred HHHHHHHhhccCCCcchHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 226 HGAQRVFDRFKGRSLIIWTAIIS---AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 226 ~~a~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
++|...+++..+.++...+.... .....|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..
T Consensus 559 ~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 559 AARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999988755544443333 334559999999999999875 5678888999999999999999999999998
Q ss_pred hhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 303 GQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 303 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
.. .| +...+..+...+...|++++|+..+++. ...| +...+..+..++...|++++|+..++++.+..|++..+
T Consensus 637 ~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 637 EL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred Hh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 53 45 5677888888999999999999999987 3445 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
....+....+..+++.|.+-+++.-....
T Consensus 714 ~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 714 TPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999998877655443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-15 Score=147.01 Aligned_cols=352 Identities=12% Similarity=0.081 Sum_probs=274.0
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehH-HHH--HHHHHhcCCHHHH
Q 012234 51 ACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSY-SAI--ISGYMVHGFVEKA 127 (468)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l--i~~~~~~~~~~~A 127 (468)
...+.|+++.|+..|+++++..+.-...++ .++..+...|+.++|+..+++...|+...+ ..+ ...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 456899999999999999987644222344 788889999999999999999997754443 334 4577888999999
Q ss_pred HHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 012234 128 MDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 128 ~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 204 (468)
+++|+++.+ | +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|...++++.+..
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 999999986 3 4556778888999999999999999999876 5666666555555555667767999999999986
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhhccC-----------------------------------------------
Q 012234 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG----------------------------------------------- 237 (468)
Q Consensus 205 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------------------------------------- 237 (468)
+.+...+..+..++.+.|-...|.++..+-+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 55566667777777777766666555543221
Q ss_pred ----CCcc---hH----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 238 ----RSLI---IW----TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 238 ----~~~~---~~----~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
+++. .| .-.+-++...|++.++++.|+.+...|.+....+-..+.++|...+.+++|+.+++.+....+
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 0110 11 123446778899999999999999888665566888899999999999999999999876422
Q ss_pred ----CCCCHhHHHHHHHHHhccCChHHHHHHHHhCCC--------------CCC---HHHHHHHHHHHHHcCChHHHHHH
Q 012234 307 ----IQPSVEHYACMVGVLSRARRISEATEFVSKMPV--------------KPS---AKVWGALLYGASISGDVELGKFV 365 (468)
Q Consensus 307 ----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~~---~~~~~~l~~~~~~~g~~~~a~~~ 365 (468)
..++......|.-+|...+++++|..+++++.. .|+ ......++..+...|+..+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122444457889999999999999999998831 122 23445567778899999999999
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
++++....|.|+.....+++++...|...+|.+.++.....
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999777654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-16 Score=146.71 Aligned_cols=402 Identities=12% Similarity=0.075 Sum_probs=245.9
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCC-CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLR-PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
-|++.-+.|..-|.-.|+++.+..+...+....... .-+.+|..+.+++-..|++++|...|-+..+....-....+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 345566666666666667666666666665221111 1133466666666666677776666666655442221233344
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcC----CHHHHHHHHhhCCC-------------------
Q 012234 83 LIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHG----FVEKAMDLFQVMKR------------------- 136 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~------------------- 136 (468)
+...+.+.|+++.+...|+.+.+. +..+...|...|...+ ..+.|..++.+..+
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 566666666666666666665542 2333344444444332 23334444433332
Q ss_pred ----------------------CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHH
Q 012234 137 ----------------------PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS---GVRPNA------VTISSIFSLFS 185 (468)
Q Consensus 137 ----------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~p~~------~~~~~l~~~~~ 185 (468)
..+...|.+...+...|++++|...|...... ...+|. .+--.+..+..
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 33344555555555556666666665555433 111111 11112333444
Q ss_pred ccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSL 262 (468)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (468)
..++.+.|.+.|..+.+.. +.-+..|..++.+....+...+|...+..+.. .++..+..+...|.....+..|.+-
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 5555666666666555532 11122233333333334556666666666543 4566677777777777777777776
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH
Q 012234 263 FNEMLNN-GIQPDPVTFTAVLSACAH------------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 263 ~~~m~~~-~~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (468)
|....+. ...+|..+...|...|.. .+..++|+++|.++.+. -+.|...-+-+.-.++..|++.+
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchH
Confidence 6655443 123566766666665543 24467888888888853 34477778888888999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 330 ATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 330 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
|..+|.+.. ......+|..+.++|...|++..|+++|+...+.. .+++.+...|++++.+.|++.+|.+.+.....
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999984 23356789999999999999999999999988874 45788899999999999999999998877765
Q ss_pred CCC
Q 012234 406 SGL 408 (468)
Q Consensus 406 ~~~ 408 (468)
...
T Consensus 745 ~~p 747 (1018)
T KOG2002|consen 745 LAP 747 (1018)
T ss_pred hCC
Confidence 443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-15 Score=142.20 Aligned_cols=383 Identities=11% Similarity=0.081 Sum_probs=253.6
Q ss_pred CChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhCCCHHHHH
Q 012234 20 GFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKM--DLWICNALIGMYAKCGSLDYAR 97 (468)
Q Consensus 20 g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 97 (468)
..+..++.++...-... +-|+...+.|...+.-.|++..++.+...+....... -...|--+.++|...|++++|.
T Consensus 250 ~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 34667888887776333 3567788888899999999999999999998765221 2344667999999999999999
Q ss_pred HHHhhcCCC--C--eehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCC----ChHHHHHHHHHHH
Q 012234 98 ALLDEMSDK--D--EVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNN----RHEAVLDLVREMQ 166 (468)
Q Consensus 98 ~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g----~~~~a~~~~~~m~ 166 (468)
.+|-+..+. + ...+.-|.+.+.+.|+++.|...|+.+.+ || ..+...|...|...+ ..+.|..++.+..
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999887753 2 44566788999999999999999999875 44 456777777777665 4567777777766
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH----HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC----
Q 012234 167 ASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV----KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---- 238 (468)
Q Consensus 167 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 238 (468)
..- +.|...|..+...+....-+ .+...|..+. ..+-.+.+...|.+...+...|++++|...|......
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 542 44556666665555444333 3355554443 3444566777788888888888888888777765431
Q ss_pred ---Cc------chHHHHHHHHHHcCC----------------------------------hHHHHHHHHHHHHC-CCCCC
Q 012234 239 ---SL------IIWTAIISAYAAHGD----------------------------------ASKAVSLFNEMLNN-GIQPD 274 (468)
Q Consensus 239 ---~~------~~~~~l~~~~~~~g~----------------------------------~~~a~~~~~~m~~~-~~~p~ 274 (468)
+. .+--.+....-..++ ..+|...++..... ...|+
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 11 011122222333334 44444444444432 12233
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh------------ccCChHHHHHHHHhC-CCC-
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS------------RARRISEATEFVSKM-PVK- 340 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~-~~~- 340 (468)
..+ .+...+.+...+..|..-|....+.....+|+.+.-.|...|. ..+..++|+++|.++ ...
T Consensus 566 ars--l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 566 ARS--LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred HHH--HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 222 2333455555555555544444443223355555555555443 223567788887766 333
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.|...-|.+.-.++..|++..|..+|.++.+...+.+.+|..++.+|...|+|..|+++|+...+.-.
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777788888888888999999999888887777788888999999999999999998888776555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-15 Score=129.68 Aligned_cols=204 Identities=15% Similarity=0.165 Sum_probs=167.6
Q ss_pred HccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHH
Q 012234 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVS 261 (468)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 261 (468)
...|++++|...|++.....-......|+ +.-.+...|++++|++.|-++.. .+..+.-.+...|-...+...|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 34688999999999988765443334444 44567788999999999887653 667777788888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CC
Q 012234 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VK 340 (468)
Q Consensus 262 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~ 340 (468)
++.+.... ++.|+..+..|...|-+.|+..+|.+.+-.-.. -++-+..+..-|...|....-+++++.+|++.. +.
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99776654 555688899999999999999999887655442 345578888888999999999999999999984 89
Q ss_pred CCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 341 PSAKVWGALLYGAS-ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 341 ~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
|+..-|..++..|. +.|++++|..+++...+..|.+...+..|++.+...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999987765 68999999999999999999999999999999887774
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=145.59 Aligned_cols=257 Identities=17% Similarity=0.150 Sum_probs=114.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI-SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (468)
.+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4467778889999999998665444323444443 44555667788899999999988876633 56667777777 688
Q ss_pred CChHHHHHHHhhccC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012234 223 GFLHGAQRVFDRFKG--RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFN 299 (468)
Q Consensus 223 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (468)
+++++|..++....+ +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998877644 456677788889999999999999999987642 34567788888899999999999999999
Q ss_pred HhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 300 AMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 300 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
+..+. .| +......++..+...|+.+++.+++.... .+.|+..+..+..++...|+.++|...++++.+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99965 56 57788899999999999999888877663 24566778899999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 377 TGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+.+...+++++...|+.++|.++.++...
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999877643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-14 Score=124.74 Aligned_cols=183 Identities=10% Similarity=0.046 Sum_probs=148.3
Q ss_pred hcCChHHHHHHHhhccCCCcchHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKGRSLIIWTAI---ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
..|++++|.+.|++....|...-.+| .-.+-..|+.++|+..|-++... +..+...+..+...|....+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 45788999999999888776544333 33567789999999999887653 344667777888889999999999999
Q ss_pred HHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-P-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 298 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
+-+..+ -++.|+.....|...|-+.|+-..|.+.+-+. + .+-+..+..-|..-|....-+++++..|+++.-+.|+
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 988774 45557889999999999999999999876544 4 3446777777888888888899999999999989998
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
-......++.++.+.|++.+|..+++...+.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 7777777888999999999999999988654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.6e-14 Score=122.64 Aligned_cols=378 Identities=14% Similarity=0.117 Sum_probs=257.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCC-cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 012234 9 WNSMIAGYSQGGFYEECKALFREMLNSPVLRPD-GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87 (468)
Q Consensus 9 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (468)
+.....-|-++|++++|++.|.+.. . ..|+ +..|.....+|...|+|+.+.+-..+.++.++. -+..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI-~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAI-E--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHH-h--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 3444566778999999999999998 5 3577 777888888889999999999988888886533 344566667788
Q ss_pred HhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCH------------HHHHHHHhhCCC---CCHhHHHHHHH-----
Q 012234 88 AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFV------------EKAMDLFQVMKR---PGLSTWNAVIS----- 147 (468)
Q Consensus 88 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~------------~~A~~~~~~~~~---~~~~~~~~l~~----- 147 (468)
-..|++++|+.=. |-.++..++....-. ..+.+-+..-.. |+....++...
T Consensus 194 E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 8888888876321 111111111111111 122222221111 22222221111
Q ss_pred ------------------HHHh--CC---ChHHHHHHHHHHHHC-CCCCC-----------HHHHHHHHHHHHccCChhh
Q 012234 148 ------------------GLVQ--NN---RHEAVLDLVREMQAS-GVRPN-----------AVTISSIFSLFSHFSNLKG 192 (468)
Q Consensus 148 ------------------~~~~--~g---~~~~a~~~~~~m~~~-~~~p~-----------~~~~~~l~~~~~~~~~~~~ 192 (468)
++.. .+ .+..|...+.+-... -..++ ..+......-+.-.|+.-.
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 1111 11 233333333222110 01111 1111111222344688889
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 193 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
+..-++..++....++. .|-.+..+|....+.++....|+...+ .|+.+|..-.+.+.-.+++++|..=|++.++.
T Consensus 345 a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999987644433 366677789999999999999988765 56788999999999999999999999999875
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-----
Q 012234 270 GIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS----- 342 (468)
Q Consensus 270 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----- 342 (468)
.| +...|..+.-+.-+.+.++++...|++.+++ ++..+.+|+.....+...+++++|.+.|+... ..|.
T Consensus 424 --~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 424 --DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred --ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 44 4566777777777889999999999999974 56678899999999999999999999999762 2332
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 343 ----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 343 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+.+.-.++..-. .+++..|+.+++++.+.+|....+|..|+..-.+.|+.++|+++|++...
T Consensus 500 v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 223333333333 38999999999999999999999999999999999999999999998755
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-13 Score=129.74 Aligned_cols=328 Identities=16% Similarity=0.162 Sum_probs=221.6
Q ss_pred HHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhCCChHHHHH
Q 012234 87 YAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMK---RPGLSTWNAVISGLVQNNRHEAVLD 160 (468)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (468)
....|++++|..++.++... ...+|.+|...|-+.|+.+++...+-... ..|...|..+.....+.|++++|.-
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 33347777777777776653 45567777777777777777766554332 2455566667777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHH----HHHHHHHhcCChHHHHHHHhhcc
Q 012234 161 LVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT----AIIDTYAKTGFLHGAQRVFDRFK 236 (468)
Q Consensus 161 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~ 236 (468)
.|.+.++.. +++...+---...|.+.|+...|..-+.++.....+.+..-+. ..++.+...++.+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777653 4444444455566777777777777777777665333322222 23455556666677777776655
Q ss_pred C--C---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHHH
Q 012234 237 G--R---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNG---------------------------IQPDPVTFTAVLSA 284 (468)
Q Consensus 237 ~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---------------------------~~p~~~~~~~l~~~ 284 (468)
. . +...++.++..+.+...++.|......+.... ..++... ..++-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 4 1 23456777777777777777777766665521 1222222 122333
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCC--CHhHHHHHHHHHhccCChHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCh
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQP--SVEHYACMVGVLSRARRISEATEFVSKMPV---KPSAKVWGALLYGASISGDV 359 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 359 (468)
+.+....+....+...+... .+.| +...|.-+..+|...|++.+|+.+|..+.. ..+...|..+..+|...|.+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44444444444455444443 4333 567888999999999999999999999942 23577999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEE
Q 012234 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417 (468)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 417 (468)
++|++.|++++...|++..+...|+..|.+.|+.++|.+.+..+..-+-...+.+.|.
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 9999999999999999999999999999999999999999998874333333444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-12 Score=115.24 Aligned_cols=418 Identities=13% Similarity=0.138 Sum_probs=309.7
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Q 012234 17 SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 96 (468)
..+++++.|..+|+..+ ... ..+...|.-.+..-.++.....|..+++..+..-+..|.. |-..+.+=-..|++..|
T Consensus 84 esq~e~~RARSv~ERAL-dvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERAL-DVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HhHHHHHHHHHHHHHHH-hcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHH
Confidence 44677889999999998 433 4566677777888889999999999999999886665554 44455556678999999
Q ss_pred HHHHhhcC--CCCeehHHHHHHHHHhcCCHHHHHHHHhhCC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CC-
Q 012234 97 RALLDEMS--DKDEVSYSAIISGYMVHGFVEKAMDLFQVMK--RPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS-GV- 170 (468)
Q Consensus 97 ~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~- 170 (468)
.++|++-. +|+..+|++.|+.-.+...++.|..+++... .|++.+|--....-.+.|+...|..+|....+. |-
T Consensus 161 RqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 161 RQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99999866 4899999999999999999999999999876 499999999999999999999999999998764 10
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCChHHHHHH--------HhhccCC---
Q 012234 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRV--------FDRFKGR--- 238 (468)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~--- 238 (468)
..+...+.+...--.+...++.|.-+|+.++..-... ....|..+...--+-|+.....+. |+.+.+.
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 1122233333333346778899999999988764222 134555555544555665444333 2333333
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHH---HHHHHhccCCHHHHHHHHHHhhhhcCCC
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV-------TFTA---VLSACAHSGLVDKAWDIFNAMSGQYGIQ 308 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 308 (468)
|..+|--.+..-...|+.+...++|++.+.. ++|-.. .|.- .+-.-....+.+.+.++++...+ -++
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIP 397 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIP 397 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcC
Confidence 4457777777778889999999999999876 555321 1211 11112346889999999999885 334
Q ss_pred CCHhHHHHHHHHH----hccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 309 PSVEHYACMVGVL----SRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 309 p~~~~~~~l~~~~----~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
....||..+--+| .++.++..|.+++... +..|-..++...|..-.+.++++....++++.++-+|.|..+|...
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 4556666555444 4778999999999776 6788999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHH
Q 012234 384 ANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILE 444 (468)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (468)
+..-...|+++.|..+|.-.+++.....|..-|..+.. |......+.....+|+++.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId----FEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYID----FEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh----hhhhcchHHHHHHHHHHHH
Confidence 99999999999999999999887665566666643322 4444444555555555554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-12 Score=114.49 Aligned_cols=407 Identities=12% Similarity=0.090 Sum_probs=252.3
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhh---hCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCC--chHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREML---NSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKM--DLWI 79 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 79 (468)
|...|-+-...=-++|+.+....++++-. +..|+..+...|..=...|-..|..-....+....+..|+.. -..+
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 45566666666667777777777776642 255666666666666666666666666666666666555432 1345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHH----------------------------------HHHHHHhcC
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSA----------------------------------IISGYMVHG 122 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------------------------li~~~~~~~ 122 (468)
|+.-...|.+.+.++-|..+|....+- +...|.. ....+-..|
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 555566666666666666666555431 2233333 334444445
Q ss_pred CHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 012234 123 FVEKAMDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199 (468)
Q Consensus 123 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 199 (468)
+...|..++....+ | +...|-+-+.......++++|..+|.+.... .|+...|.--+..-.-.+..++|.++++.
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 55555555544432 2 2234555555555555566666666555442 44444444444444445556666666655
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 012234 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276 (468)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 276 (468)
.++.- +.-...|..+...+-+.++++.|...|..-.+ ..+..|-.+...--+.|..-.|..++++..-.+ +-+..
T Consensus 677 ~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~ 754 (913)
T KOG0495|consen 677 ALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNAL 754 (913)
T ss_pred HHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcch
Confidence 55542 22334455555566666666666665554333 233456666666666666666666666665543 33556
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (468)
.|...|+.-.+.|+.+.|..++.+..+ .++.+...|..-|....+.++-.+....+++- ..|+.+...+...+...
T Consensus 755 lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSE 830 (913)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHH
Confidence 666666666677777777766666664 34445566666666666666655555555555 45666677777888888
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSG 421 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 421 (468)
.+++.|.+-|.++++.+|++..+|..+-..+.+.|.-++-.+++.+.... .|..|..|+.+..
T Consensus 831 ~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 89999999999999999999999999999999999999999999888764 4567777875543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-13 Score=123.81 Aligned_cols=283 Identities=10% Similarity=0.009 Sum_probs=188.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCee--hHH--HHHHHHHhcCCHHHHHHH
Q 012234 55 SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEV--SYS--AIISGYMVHGFVEKAMDL 130 (468)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~li~~~~~~~~~~~A~~~ 130 (468)
.|+++.|.+.+....+....| ...+.....+..+.|+.+.|...|.++.+.++. ... .....+...|++++|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 689999998777655543222 222333345557899999999999988764322 222 224566777888888877
Q ss_pred HhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC
Q 012234 131 FQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR 207 (468)
Q Consensus 131 ~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 207 (468)
++...+ | +......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH--------------------------
Confidence 777765 3 4456777777888888888888888888776543222 111100
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (468)
..++..++.......+.+...++++.+.. .++.....+..++...|+.++|..++++..+. +|+.... ++.+
T Consensus 229 -~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~ 303 (398)
T PRK10747 229 -QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIP 303 (398)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHh
Confidence 00111222222233344455555555443 45667777788888888888888888888774 4454322 2333
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
....++.+++.+..+...+. .+-|+..+..+...+.+.+++++|.+.|+++ ...|+...+..+...+...|+.++|.
T Consensus 304 ~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred hccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44568888888888888864 2345666778888888999999999998887 46788888888888889999999999
Q ss_pred HHHHHHHhh
Q 012234 364 FVCDHLFEI 372 (468)
Q Consensus 364 ~~~~~~~~~ 372 (468)
+.+++....
T Consensus 382 ~~~~~~l~~ 390 (398)
T PRK10747 382 AMRRDGLML 390 (398)
T ss_pred HHHHHHHhh
Confidence 998888765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-13 Score=123.10 Aligned_cols=275 Identities=9% Similarity=0.035 Sum_probs=201.1
Q ss_pred cCCHHHHHHHHhhCCCC--CHhH-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChhhHHH
Q 012234 121 HGFVEKAMDLFQVMKRP--GLST-WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTIS--SIFSLFSHFSNLKGGKE 195 (468)
Q Consensus 121 ~~~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 195 (468)
.|++++|.+.+....+. ++.. |.....+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765542 2233 333344557788888888888888764 55543332 33567778888888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcc-----------hHHHHHHHHHHcCChHHHHHHHH
Q 012234 196 IHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI-----------IWTAIISAYAAHGDASKAVSLFN 264 (468)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~ 264 (468)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.... +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 455677777888888888888888888887753221 23333333344455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-C
Q 012234 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-S 342 (468)
Q Consensus 265 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~ 342 (468)
.+-+. .+.+......+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+.+++. +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65433 3457778888999999999999999999998853 5555322 233444669999999999877 3344 5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+..+..+...|...|++++|.+.|+++.+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778899999999999999999999999999865 5678999999999999999999987754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-11 Score=106.42 Aligned_cols=395 Identities=14% Similarity=0.104 Sum_probs=208.5
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHh--hccCChHH-HHHHHHHHHHhC-----------
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQAC--GQSSDIVF-GMEVHNFVIESH----------- 72 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~--~~~~~~~~-a~~~~~~~~~~~----------- 72 (468)
.+=|.|+.. ..+|..+++.-+|+.|. ..|++.+...-..+++.- -.+.++-- -++.|-.|...|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 345666654 44678889999999998 777666666555554432 22222211 122233332222
Q ss_pred --------CCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC----CeehHHHHHHHHHhcCCHHHHHHHHhhCC----C
Q 012234 73 --------IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK----DEVSYSAIISGYMVHGFVEKAMDLFQVMK----R 136 (468)
Q Consensus 73 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~ 136 (468)
.+.+..++..+|.++++--..+.|.+++++-... +..++|.+|.+-.-.-. .+++.+|. .
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 2234556666666666666666666666665432 44556666554332222 33333333 3
Q ss_pred CCHhHHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh-HHHHHHHHHH----cCCCC
Q 012234 137 PGLSTWNAVISGLVQNNRHEA----VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG-GKEIHGYAVK----NRYDR 207 (468)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~ 207 (468)
||..|+|+++++..+.|+++. |++++.+|.+.|+.|.-.+|..+|..+++.++..+ +..++.++.. ..++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 666667776666666666543 45556666666666666666666666666665533 2333333332 11121
Q ss_pred ----chhHHHHHHHHHHhcCChHHHHHHHhhccCC--------C---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012234 208 ----NIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--------S---LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272 (468)
Q Consensus 208 ----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 272 (468)
+...+...+..|.+..+.+-|..+-.-+... + ..-|..+..+.++....+.-...|+.|.-.-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 2334445555555666666555554433321 1 123444555556666666667777776665556
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccC-Ch--------HH-----HHHHHH---
Q 012234 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR-RI--------SE-----ATEFVS--- 335 (468)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~--------~~-----A~~~~~--- 335 (468)
|+..+...++++....|.++-.-+++..++.- |-.........+...+++.. +. .. |..+++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777766666666666666655532 32222222222333333322 11 00 111111
Q ss_pred ----hC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCCcc--hHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 336 ----KM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE---PENTG--NYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 336 ----~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++ ..+......+..+-.+.+.|..++|.+++....+.. |..+. +...+.+.-.+.+..-.|...++-|..
T Consensus 510 ~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 510 SQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred hhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 123345555666666677777777777777664432 32222 233445555556667777777777765
Q ss_pred CCC
Q 012234 406 SGL 408 (468)
Q Consensus 406 ~~~ 408 (468)
.++
T Consensus 590 ~n~ 592 (625)
T KOG4422|consen 590 FNL 592 (625)
T ss_pred cCc
Confidence 554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-12 Score=110.38 Aligned_cols=335 Identities=16% Similarity=0.150 Sum_probs=185.9
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALI 84 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (468)
+..+|.++|.++|+--..++|.+++++.. ....+.+..+||.+|.+.+-..+ .++..+|......||..|+|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~-~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHR-AAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHH-HhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 45678888888888888888888888887 44457888888888877654433 67788888888888888888888
Q ss_pred HHHHhCCCHHHHHHHHh----hcC----CCCeehHHHHHHHHHhcCCHHH-HHHHHhhCCCCCHhHHHHHHHHHHhCCCh
Q 012234 85 GMYAKCGSLDYARALLD----EMS----DKDEVSYSAIISGYMVHGFVEK-AMDLFQVMKRPGLSTWNAVISGLVQNNRH 155 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~----~~~----~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (468)
.+.++.|+++.|.+.+- +|+ +|+..+|..+|..+++.++..+ |..+..++..
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N------------------- 341 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN------------------- 341 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH-------------------
Confidence 88888888777655433 332 2455555555555555554422 2222222210
Q ss_pred HHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCC
Q 012234 156 EAVLDLVREMQASGV---RP-NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR----YDRN---IYVATAIIDTYAKTGF 224 (468)
Q Consensus 156 ~~a~~~~~~m~~~~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~ 224 (468)
.+....+ .| |...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.|....
T Consensus 342 --------~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 342 --------SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred --------hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 0000011 11 22334444444444444444444443333211 1111 1223344444455555
Q ss_pred hHHHHHHHhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 012234 225 LHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG----------- 289 (468)
Q Consensus 225 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 289 (468)
.+.-...|+.+.. ++..+...++++....|.++-.-+++..++..|..-+......++..+++..
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 5555555554443 3333444444444444555555555554444442222222222222222211
Q ss_pred ---------CH-HHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCCHHHHHHHHHH
Q 012234 290 ---------LV-DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-------PVKPSAKVWGALLYG 352 (468)
Q Consensus 290 ---------~~-~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~l~~~ 352 (468)
++ +.....-.++.+. .-.....+...-.+.|.|+.++|.+++.-+ +..|.....--++..
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~---~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~ 570 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQ---DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDS 570 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhc---cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHH
Confidence 11 1111122233322 334456777778889999999999988765 244555555566777
Q ss_pred HHHcCChHHHHHHHHHHHhhCC
Q 012234 353 ASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
.....+...|..+++-+...+-
T Consensus 571 a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 571 AKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHhcCCHHHHHHHHHHHHHcCc
Confidence 7788888999999888876653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-12 Score=111.49 Aligned_cols=328 Identities=14% Similarity=0.064 Sum_probs=243.3
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHh-HHHHHHHHHHh
Q 012234 73 IKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLS-TWNAVISGLVQ 151 (468)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~ 151 (468)
...|...+-.....+.+.|....|++.|......-+..|.+-+....-..+.+.+..+.......+.. .=-.+..++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 34455555555556667788888888888877665666665555444444455444444444322221 11234456666
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCChHH-H
Q 012234 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD--RNIYVATAIIDTYAKTGFLHG-A 228 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~-a 228 (468)
..+.++++.-.+.....|++-+...-+....+.....++++|+.+|+++.+...- .|..+|..++-.--...++.- |
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 7788899988888888887666666666666777889999999999999987421 255666666533222222211 2
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCC
Q 012234 229 QRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI 307 (468)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (468)
..+ -.+.+-.+.|...+..-|+-.++.++|...|++..+. .|. ...|+.+.+-|....+...|..-++.+++ -.
T Consensus 320 ~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~ 394 (559)
T KOG1155|consen 320 QNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN 394 (559)
T ss_pred HHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC
Confidence 222 2233334567777788888899999999999999885 444 45677788889999999999999999984 22
Q ss_pred CCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 308 QPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
+.|-..|-.|.++|.-.+...-|+-+|++.. .+| |+..|.+|..+|.+.++.++|+..|.++...+..+..++..|+.
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 4488899999999999999999999999983 455 78999999999999999999999999999998778899999999
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 012234 386 LYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~ 405 (468)
.|-+.++.++|...+++-++
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999988876
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-11 Score=110.64 Aligned_cols=393 Identities=10% Similarity=0.099 Sum_probs=290.8
Q ss_pred HHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHH----HhCCCCchHHHHHHHHHHHhC
Q 012234 15 GYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVI----ESHIKMDLWICNALIGMYAKC 90 (468)
Q Consensus 15 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ 90 (468)
+|.+..-|+.|..++.... ..+|.+...|.+....--.+|+.+...++...-+ ..|+..+..-|-.=...|-+.
T Consensus 415 AlarLetYenAkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 4444555666666666664 2245566666665555556666666666555432 335555555555555556666
Q ss_pred CCHHHHHHHHhhcCC------CCeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHH
Q 012234 91 GSLDYARALLDEMSD------KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDL 161 (468)
Q Consensus 91 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 161 (468)
|..--+..+...... .-..+|..-...|.+.+-++-|..+|....+ .+...|...+..--..|..+....+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 655555555544432 1234677777778888888888888888776 3345677766666677999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--CC
Q 012234 162 VREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RS 239 (468)
Q Consensus 162 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~ 239 (468)
|++.... ++.....+....+.+...|+...|+.++..+.+.. +.+..++..-+.....+..++.|..+|.+... +.
T Consensus 573 lqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 573 LQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 9999886 34455566666778888999999999999999876 44778888889999999999999999998875 45
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHH
Q 012234 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318 (468)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 318 (468)
...|.--+....-.++.++|.+++++..+. -|+ ...|..+.+.+-+.++.+.|...|..-.+ .++..+..|-.|.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLa 726 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLA 726 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHH
Confidence 567777777777789999999999998875 455 45677788888889999999988877654 4455677888888
Q ss_pred HHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------------------
Q 012234 319 GVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE--------------------- 375 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------------------- 375 (468)
..=.+.|.+.+|..++++.. .+.+...|...+..-.+.|+.+.|..+..++++..|.
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHH
Confidence 88889999999999999874 4457889999999999999999999888887665443
Q ss_pred ---------CcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEE
Q 012234 376 ---------NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417 (468)
Q Consensus 376 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 417 (468)
|+.+...++..+....++++|++.|.+..+.+. +-|..|.
T Consensus 807 ~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~--d~GD~wa 855 (913)
T KOG0495|consen 807 IDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP--DNGDAWA 855 (913)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC--ccchHHH
Confidence 444577888889999999999999999887654 3444453
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=130.89 Aligned_cols=252 Identities=14% Similarity=0.110 Sum_probs=89.6
Q ss_pred HHHhhccCChHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCH
Q 012234 49 LQACGQSSDIVFGMEVHNFVIESH-IKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFV 124 (468)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 124 (468)
...+.+.|++++|+++++...... .+.+...|..+.......++.+.|...++++... ++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 444555555566665554333322 2223444444444555555566666666555542 23344444444 455566
Q ss_pred HHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 012234 125 EKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201 (468)
Q Consensus 125 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (468)
++|.++++...+ ++...+..++..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|...++.+.
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666655554432 444556666667777777777777777765432 23455566666677777777777777777777
Q ss_pred HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcc---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012234 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK---GRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278 (468)
Q Consensus 202 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 278 (468)
+.. +.+..+...++..+...|+.+++..++.... ..++..+..+..++...|++++|+.+|++..... +.|....
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~ 251 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWL 251 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccc
Confidence 764 3345666677777777777777655555443 3456677777788888888888888888877642 3366777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhh
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
..+..++...|+.++|..+.+++.+
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 7778888888888888887776653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-12 Score=120.19 Aligned_cols=289 Identities=9% Similarity=0.031 Sum_probs=187.6
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCee--hHHHHHHHHHhcCCHHHHH
Q 012234 53 GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD--KDEV--SYSAIISGYMVHGFVEKAM 128 (468)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~li~~~~~~~~~~~A~ 128 (468)
...|+++.|.+.+....+..+.| ...+-....++...|+.+.|.+.+++..+ |+.. ........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45799999999998877764332 23334556778888999999999988754 3332 2233456666777777777
Q ss_pred HHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 012234 129 DLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205 (468)
Q Consensus 129 ~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 205 (468)
..++.+.+ | +...+..+...+...|++++|.+.+..+.+.++. +...+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH-----------------------
Confidence 77777654 3 4456667777777777777777777777776533 2222211100
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HH
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT---FT 279 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~ 279 (468)
..+..++..-......+.....+..... .++..+..++..+...|+.++|.+++++..+. .||... ..
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0000111111111223333444444433 36667777888888889999999999888875 334331 11
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHc
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSK--M-PVKPSAKVWGALLYGASIS 356 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~ 356 (468)
...-.....++.+.+.+.+++..+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+...
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 122223445778888888888876522222215667888999999999999999994 3 4688888888999999999
Q ss_pred CChHHHHHHHHHHHhh
Q 012234 357 GDVELGKFVCDHLFEI 372 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~ 372 (468)
|+.++|.+++++....
T Consensus 384 g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 384 GDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988664
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-12 Score=117.31 Aligned_cols=279 Identities=11% Similarity=0.012 Sum_probs=172.0
Q ss_pred hcCCHHHHHHHHhhCCC--CCH-hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCChhhHH
Q 012234 120 VHGFVEKAMDLFQVMKR--PGL-STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV--TISSIFSLFSHFSNLKGGK 194 (468)
Q Consensus 120 ~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~ 194 (468)
..|+++.|.+.+.+..+ |+. ..+-....++.+.|+++.|.+.+.+..+. .|+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555555443 222 22233344555566666666666665543 23322 2222345555566666666
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC---cchHH----HHHHHHHHcCChHHHHHHHHHHH
Q 012234 195 EIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS---LIIWT----AIISAYAAHGDASKAVSLFNEML 267 (468)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~----~l~~~~~~~g~~~~a~~~~~~m~ 267 (468)
..++.+.+.. +.++.+...+...+...|+++.|.+.+..+.+.+ ...+. .........+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666654 3344555566666666666666666666655421 11121 11111123333333444555554
Q ss_pred HCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhH---HHHHHHHHhccCChHHHHHHHHhC-CCC
Q 012234 268 NNGI---QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEH---YACMVGVLSRARRISEATEFVSKM-PVK 340 (468)
Q Consensus 268 ~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~A~~~~~~~-~~~ 340 (468)
+... +.+...+..+...+...|+.++|...+++..+. .|+... .....-.....++.+.+.+.+++. +..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4321 137788888999999999999999999999965 344331 111222233457888888888776 334
Q ss_pred C-CH--HHHHHHHHHHHHcCChHHHHHHHHH--HHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 341 P-SA--KVWGALLYGASISGDVELGKFVCDH--LFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 341 ~-~~--~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
| |+ ....++...+.+.|++++|.+.|++ +.+..|++ ..+..++..+.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 34 6778999999999999999999994 55666654 5577999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-13 Score=123.26 Aligned_cols=276 Identities=11% Similarity=0.007 Sum_probs=216.1
Q ss_pred CCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChhhHHHH
Q 012234 122 GFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREMQASG--VRPNAVTISSIFSLFSHFSNLKGGKEI 196 (468)
Q Consensus 122 ~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~ 196 (468)
-+..+|+..|...+. +| ..+...+..+|...+++++|.++|+.+.+.. ..-+..+|++.+-.+-+. -+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 356788888888654 33 3456678889999999999999999988752 123556777776544321 12222
Q ss_pred H-HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012234 197 H-GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272 (468)
Q Consensus 197 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 272 (468)
+ +.+.+.. +..+.+|.++.++|.-.++.+.|++.|++..+-|+ .+|+.+..-+.....+|.|...|+..... .
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--D 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--C
Confidence 2 2333332 56678999999999999999999999999887554 57888888888999999999999987653 3
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHH
Q 012234 273 PD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGA 348 (468)
Q Consensus 273 p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~ 348 (468)
|. -..|..+...|.+.++++.|+-.|+++. .+.| +......+...+.+.|+.++|+.+++++- . +-|+..-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 32 2355567788999999999999999998 5567 55666778888999999999999999983 3 335666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.+..+...+++++|...++++.+..|++..+|..++..|.+.|+.+.|+.-|.-+.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 77788889999999999999999999999999999999999999999999887776544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-11 Score=115.29 Aligned_cols=312 Identities=12% Similarity=0.120 Sum_probs=165.7
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 012234 19 GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARA 98 (468)
Q Consensus 19 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 98 (468)
.|++++|.+++.+..++. +.+...|.+|...|-+.|+.+++...+-.+.-.+ +.|...|..+.......|.++.|.-
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 367777777777766332 4556667777777777777766666554443333 2355666666666667777777777
Q ss_pred HHhhcCCCCeehH---HHHHHHHHhcCCHHHHHHHHhhCCCCCH--------hHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012234 99 LLDEMSDKDEVSY---SAIISGYMVHGFVEKAMDLFQVMKRPGL--------STWNAVISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 99 ~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
+|.+..+.++.-| .--...|-+.|+...|.+.|.++.+.++ ..--.++..+...++-+.|++.++....
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7776665433323 2334556666777777666666654111 1222334555555555666666666554
Q ss_pred C-CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC---------------------------CCCchhHHHHHHHHH
Q 012234 168 S-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR---------------------------YDRNIYVATAIIDTY 219 (468)
Q Consensus 168 ~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~ 219 (468)
. +-..+...+++++..+.+...++.+........... ..++..++ .+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhh
Confidence 2 112233345555666666666666655555544411 11122220 111122
Q ss_pred Hhc--CChHHHHHHHhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 012234 220 AKT--GFLHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDK 293 (468)
Q Consensus 220 ~~~--g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 293 (468)
... +...+++..|-.... .++..|.-+..++...|++.+|+.+|..+......-+...|..+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 222 222222222221111 12334555666666666666666666666554333345556666666666666666
Q ss_pred HHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 294 AWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 294 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
|.+.|+++... .| +...-..|...+.+.|+.++|.+.+..+
T Consensus 468 A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 468 AIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 66666666532 33 3344445555666666666666666664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-13 Score=122.60 Aligned_cols=276 Identities=14% Similarity=0.177 Sum_probs=209.2
Q ss_pred CHHHHHHHHhhcCCC--C-eehHHHHHHHHHhcCCHHHHHHHHhhCCC------CCHhHHHHHHHHHHhCCChHHHHHHH
Q 012234 92 SLDYARALLDEMSDK--D-EVSYSAIISGYMVHGFVEKAMDLFQVMKR------PGLSTWNAVISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 92 ~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (468)
+..+|...|..+.+. + .-....+..+|...+++++|.++|+.+.+ .+...|.+.+-.+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 456777777775542 3 23445567788888888888888888765 455677776654432 2223333
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcc
Q 012234 163 -REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI 241 (468)
Q Consensus 163 -~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 241 (468)
+.+.... +-.+.+|..+.++|+-.++.+.|.+.|+.+++.+ +...++|+.+.+-+.....+|.|...|+.....++.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2233332 4456788888889998999999999988888765 336778888888888889999999999998887665
Q ss_pred h---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHH
Q 012234 242 I---WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACM 317 (468)
Q Consensus 242 ~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 317 (468)
- |.-+...|.++++++.|+-.|+++.+.+ +-+.+....+...+.+.|+.++|+.+++++.. +.| |+..--..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHH
Confidence 4 5556678999999999999999988753 23566777788888999999999999999884 344 55555556
Q ss_pred HHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 318 VGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 318 ~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
+..+...++.++|+..+++++ ..| +...+..+...|.+.|+.+.|+.-|.-+.+++|.-.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 777888999999999999995 445 567888888999999999999999999999998643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-11 Score=110.34 Aligned_cols=259 Identities=12% Similarity=0.039 Sum_probs=210.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (468)
.......-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+++.- |..+.+|-++..-|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 34444556777899999999999988864 6666667777778889999888888877787764 556778888888888
Q ss_pred hcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
-.|++.+|++.|.+...-|. ..|-.....|+-.|..++|+..+...-+. ++-....+..+.--|.+.++.+.|.++
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 89999999999998776443 58999999999999999999999887663 222222333455567888999999999
Q ss_pred HHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--------CC-CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012234 298 FNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--------VK-PSAKVWGALLYGASISGDVELGKFVCD 367 (468)
Q Consensus 298 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (468)
|.... ++.| |+...+-+.-.....+.+.+|..+|+... .. .-..+++.|..+|.+.+.+++|+..++
T Consensus 403 f~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 403 FKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 99988 5556 67778888777788899999999998762 11 135678999999999999999999999
Q ss_pred HHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 368 HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+++.+.|.+..++..++-+|...|+++.|+..|.+...
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999998877654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-11 Score=102.32 Aligned_cols=281 Identities=11% Similarity=0.140 Sum_probs=139.6
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-Cee------hHHHHHHHHHhcCCHHHHH
Q 012234 56 SDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEV------SYSAIISGYMVHGFVEKAM 128 (468)
Q Consensus 56 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~li~~~~~~~~~~~A~ 128 (468)
...++|.+.|-+|.+..+. +..+.-+|.+.|.+.|..|.|+++...+.+. |.. +...|..-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3445555555555553322 3334444555555555555555555544432 211 1222333444444445555
Q ss_pred HHHhhCCCCCH---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 012234 129 DLFQVMKRPGL---STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205 (468)
Q Consensus 129 ~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 205 (468)
.+|..+.+.+. .....|+..|....+|++|+++-+++...+-.+...-
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----------------------------- 178 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----------------------------- 178 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-----------------------------
Confidence 55544443111 1333444445555555555555444444332221110
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 282 (468)
-...|..|...+....+.+.|..++.+..+.|+ .+--.+...+...|+++.|.+.++...+.+..--..+...|.
T Consensus 179 --IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 179 --IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred --HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 012344455555555666666666666554332 233344456666777777777777666653333344566666
Q ss_pred HHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc---CC
Q 012234 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF-VSKMPVKPSAKVWGALLYGASIS---GD 358 (468)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~---g~ 358 (468)
.+|...|+.++...++.++... .+....-..+.+......-.+.|..+ .+++..+|+...+..++...... |.
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 7777777777777777666643 34444444444444444444444433 34445677777777776654432 23
Q ss_pred hHHHHHHHHHHHh
Q 012234 359 VELGKFVCDHLFE 371 (468)
Q Consensus 359 ~~~a~~~~~~~~~ 371 (468)
..+....++.|+.
T Consensus 334 ~k~sL~~lr~mvg 346 (389)
T COG2956 334 AKESLDLLRDMVG 346 (389)
T ss_pred hhhhHHHHHHHHH
Confidence 4444445555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-10 Score=100.22 Aligned_cols=395 Identities=11% Similarity=0.092 Sum_probs=299.6
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNAL 83 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (468)
.+...|-..+..=.++.....|..+++... .. +|.-...|.-.+..--..|+...|.++|+.-.+ ..|+...|++.
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAv-t~-lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sf 180 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAV-TI-LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSF 180 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHH-Hh-cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 456667778888889999999999999987 32 233334455555555677999999999998877 57899999999
Q ss_pred HHHHHhCCCHHHHHHHHhhcC--CCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC------CCHhHHHHHHHHHHhCCCh
Q 012234 84 IGMYAKCGSLDYARALLDEMS--DKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR------PGLSTWNAVISGLVQNNRH 155 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~ 155 (468)
|+.=.+-+.++.|..++++.. .|+..+|.....--.++|+...|..+|+...+ -+...+++....-.++..+
T Consensus 181 I~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999865 58888999988888999999999999988765 2234567777777778889
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhhHHHH--------HHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 156 EAVLDLVREMQASGVRPN--AVTISSIFSLFSHFSNLKGGKEI--------HGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 156 ~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
+.|.-+|+-.++. ++.+ ...|.....---+-|+.....+. |+..++.+ +.|-.++--.+..-...|+.
T Consensus 261 ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~ 338 (677)
T KOG1915|consen 261 ERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDK 338 (677)
T ss_pred HHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCH
Confidence 9999999988876 2333 23444444444455665554433 34444443 45556677778888888999
Q ss_pred HHHHHHHhhccCCCcc-----hHHHHHH--------HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHhcc
Q 012234 226 HGAQRVFDRFKGRSLI-----IWTAIIS--------AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL----SACAHS 288 (468)
Q Consensus 226 ~~a~~~~~~~~~~~~~-----~~~~l~~--------~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~----~~~~~~ 288 (468)
+...++|++....-+. .|...|- .-....+.+.+.++++..++. ++....||.-+- ..-.++
T Consensus 339 ~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 339 DRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHH
Confidence 9999999988753221 1222211 123467899999999999884 444556665443 334567
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
.++..|.+++.... |.-|-..+|...|..=.+.+.++.+.+++.+. ...| +..+|......-...|+.+.|..+|
T Consensus 418 ~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 418 LNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred cccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 89999999999988 77899999999999999999999999999987 3444 6889999999899999999999999
Q ss_pred HHHHhhCCCC--cchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 367 DHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 367 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
+-++....-+ ...+...++.-...|.++.|..+++++.+..-
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 9888753211 23466677777789999999999999988653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.2e-11 Score=101.57 Aligned_cols=284 Identities=11% Similarity=0.058 Sum_probs=197.2
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC--C--eehHHHHHHHHHhcCCHHHHHH
Q 012234 54 QSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK--D--EVSYSAIISGYMVHGFVEKAMD 129 (468)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~A~~ 129 (468)
-.|++.+|.+...+-.+.+..| ...|..-+.+.-..|+.+.+-.++.+..++ | ...+-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3588888888888877776443 334555667777888888888888888764 3 2344555566677777777776
Q ss_pred HHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 012234 130 LFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD 206 (468)
Q Consensus 130 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 206 (468)
-+.++.+ .+.........+|.+.|++.....++..|.+.|+-.+...-.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 6665543 556677888888888888888888888888877655443210
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283 (468)
Q Consensus 207 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 283 (468)
....++..+++-....+..+.-...++.... .++..-..++.-+.+.|+.++|.++..+..+.+..|+ . ...-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHH
Confidence 0112333344444444444444445555443 4566667777788888889999998888888777666 2 2223
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELG 362 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a 362 (468)
.+.+.++...-.+..++..+.++..| ..+..|...|.+.+.|.+|.+.|+.. +..|+..+|+-+.+++...|+..+|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 45677787777777777776554444 67778888888888898888888866 5778888888888888888888888
Q ss_pred HHHHHHHHhh
Q 012234 363 KFVCDHLFEI 372 (468)
Q Consensus 363 ~~~~~~~~~~ 372 (468)
.+..++.+..
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 8888887754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-11 Score=101.12 Aligned_cols=306 Identities=13% Similarity=0.138 Sum_probs=205.8
Q ss_pred CCCHHHHHHHHhhcCCCCeehH---HHHHHHHHhcCCHHHHHHHHhhCCC-CCHh------HHHHHHHHHHhCCChHHHH
Q 012234 90 CGSLDYARALLDEMSDKDEVSY---SAIISGYMVHGFVEKAMDLFQVMKR-PGLS------TWNAVISGLVQNNRHEAVL 159 (468)
Q Consensus 90 ~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~g~~~~a~ 159 (468)
.++.++|.++|-+|.+.|+.++ -+|.+.|-+.|..+.|+++-..+.+ ||.. ..-.|..-|...|-+|.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4677778888877776555443 4566667777777777777766554 4432 2344555666677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC
Q 012234 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239 (468)
Q Consensus 160 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 239 (468)
.+|..+.+.| ..-......|+..|....+|++|.++-..+.+.+..+... .+..
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq---------------------- 181 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ---------------------- 181 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH----------------------
Confidence 7777666543 2223344555556666666666666655555544222211 1222
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHH
Q 012234 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319 (468)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 319 (468)
.|.-+...+....+++.|..++.+..+...+ ....-..+.+.....|+++.|.+.++.+.+. +..--+.+...|..
T Consensus 182 --fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~ 257 (389)
T COG2956 182 --FYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYE 257 (389)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence 2344556666778899999999999876322 3344445778889999999999999999876 33334677889999
Q ss_pred HHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH---cCChHH
Q 012234 320 VLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ---AGRWDE 395 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~ 395 (468)
+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+...|. ...+..|++.... .|++.+
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhh
Confidence 999999999999999877 45566666666666666666778888888887777774 4555566655433 356888
Q ss_pred HHHHHHHHHhCCCCCCCceeEEEECCEEEEE
Q 012234 396 ADRVREQMKESGLAKIPGRSWIECSGGLQSF 426 (468)
Q Consensus 396 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 426 (468)
-..+++.|....++..|......++-..+.|
T Consensus 337 sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 337 SLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 8899999999888888876666666555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-10 Score=100.06 Aligned_cols=281 Identities=12% Similarity=0.097 Sum_probs=190.5
Q ss_pred cCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHH
Q 012234 121 HGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197 (468)
Q Consensus 121 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 197 (468)
.|++.+|++...+-.+ .....|..-+.+..+.|+.+.+-.++.+.-+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666655433 2223344444556666777777777777665422334444445555666677777777777
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc-----------chHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL-----------IIWTAIISAYAAHGDASKAVSLFNEM 266 (468)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~m 266 (468)
..+.+.+ +.++.+......+|.+.|++.....++.++.+.+. .+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7766665 34455666677777777777777777777766432 35666666666666666656667665
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHH
Q 012234 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM--PVKPSAK 344 (468)
Q Consensus 267 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~ 344 (468)
-.+ .+-++..-.+++.-+...|+.++|.++.++..+. +..|... ..-.+.+-++...-++..++. ..+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 443 4555667777888899999999999999988876 5566511 122334555555544444433 1233458
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
.+.+|...|.+++.+.+|...|+.+.+..| +...|..+++++.+.|+..+|.++.++....-..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 889999999999999999999998888877 5688999999999999999999999887754433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-10 Score=98.40 Aligned_cols=353 Identities=11% Similarity=0.062 Sum_probs=238.4
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCe-ehHHHHHHHHH
Q 012234 41 DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDE-VSYSAIISGYM 119 (468)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~ 119 (468)
|..-+......+.+.|....|.+.|...+..- +..-..|-.|.... -+.+.+..+.......+. -.---+..++-
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 33333333444556677777777777665542 22333444443332 233333333322222110 01112334444
Q ss_pred hcCCHHHHHHHHhhCCC---CCHhHH-HHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChhhH
Q 012234 120 VHGFVEKAMDLFQVMKR---PGLSTW-NAVISGLVQNNRHEAVLDLVREMQASGV--RPNAVTISSIFSLFSHFSNLKGG 193 (468)
Q Consensus 120 ~~~~~~~A~~~~~~~~~---~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a 193 (468)
.....+++..-.+.... |+..-+ +....+.-...++++|+.+|+++.+++. --|..+|+.++-.-.....
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk---- 314 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK---- 314 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----
Confidence 55566666655555443 333322 2333445667899999999999988731 1256677766533222111
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012234 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNG 270 (468)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 270 (468)
...+.+-...--+--+.|...+.+-|.-.++.++|...|++..+-|+ .+|+.+..-|....+...|++.++...+-.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 11222111111133456677788888999999999999999887444 689999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHH
Q 012234 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWG 347 (468)
Q Consensus 271 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ 347 (468)
+-|-..|-.|.++|.-.+...=|+-.|++... ++| |...|.+|..+|.+.++.++|++.|.+.- ...+...+.
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 45778999999999999999999999999884 456 78999999999999999999999999884 233568899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh-------CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEI-------EPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.|...+-+.++.++|...+++.++. .|....+...|+.-+.+.+++++|..+......
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999999999999999999998873 233444556688889999999999987766544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-11 Score=104.44 Aligned_cols=197 Identities=12% Similarity=0.108 Sum_probs=156.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (468)
...+..+...+...|++++|...+++..+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 455666777778888888888888776542 34567777888888999999999998888763 33556777788888
Q ss_pred hccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHH
Q 012234 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
...|++++|...+++.............+..+...+...|++++|...+.+.. ..| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 89999999999999987542222344567778888999999999999998872 333 4677888899999999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
..++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988888888889999999999999999998877553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.1e-11 Score=110.41 Aligned_cols=231 Identities=14% Similarity=0.187 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHc-----C-CCCchh-HHHHHHHHHHhcCChHHHHHHHhhccC-------C-C
Q 012234 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKN-----R-YDRNIY-VATAIIDTYAKTGFLHGAQRVFDRFKG-------R-S 239 (468)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~-~ 239 (468)
.+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555666677777777777666666553 1 112222 223466777788888888777777653 1 2
Q ss_pred c---chHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhhcC--C
Q 012234 240 L---IIWTAIISAYAAHGDASKAVSLFNEMLNN-----GIQ-PDP-VTFTAVLSACAHSGLVDKAWDIFNAMSGQYG--I 307 (468)
Q Consensus 240 ~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 307 (468)
+ .+++.|..+|.+.|++++|...+++..+- |.. |.. ..++.+...|...+++++|..++....+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 46777888888888888888777766431 222 222 2466677788889999999999987765432 2
Q ss_pred CCC----HhHHHHHHHHHhccCChHHHHHHHHhCC---------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q 012234 308 QPS----VEHYACMVGVLSRARRISEATEFVSKMP---------VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEI- 372 (468)
Q Consensus 308 ~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 372 (468)
.++ ..+++.|...|...|++++|.++++++. ..+ ....++.+...|.+.+++.+|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 4578899999999999999999998772 122 2457788889999999999999999887654
Q ss_pred ---CCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 373 ---EPEN---TGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 373 ---~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+|++ ..+|..|+.+|.+.|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4444 45688999999999999999999888865
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.3e-09 Score=93.94 Aligned_cols=382 Identities=11% Similarity=0.079 Sum_probs=240.1
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 92 (468)
+..+..+|++++|++....+. ..+ +-+...+..-+-+..+.+.+++|+.+.+.-.. ...+...+---..+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil-~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKIL-SIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHH-hcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 556677899999999999998 544 55566677778888999999999966543211 11111111123455667899
Q ss_pred HHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------------------------------HhH
Q 012234 93 LDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPG-------------------------------LST 141 (468)
Q Consensus 93 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-------------------------------~~~ 141 (468)
.|+|+..++.....+..+...-...+.+.|++++|..+|+.+.+.+ ..+
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 9999999996555566677777788889999999999998884210 012
Q ss_pred HHHH---HHHHHhCCChHHHHHHHHHHHHC-------CCCC------CHH-HHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 012234 142 WNAV---ISGLVQNNRHEAVLDLVREMQAS-------GVRP------NAV-TISSIFSLFSHFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 142 ~~~l---~~~~~~~g~~~~a~~~~~~m~~~-------~~~p------~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 204 (468)
|..+ ...+...|++.+|+++++..... +-.- ... .-..+.-.+...|+-++|..+|...++.+
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 3322 34567789999999999888321 1111 111 11234445678899999999999999876
Q ss_pred CCCchh----HHHHHHHHHHhc---------------------------------------------CChHHHHHHHhhc
Q 012234 205 YDRNIY----VATAIIDTYAKT---------------------------------------------GFLHGAQRVFDRF 235 (468)
Q Consensus 205 ~~~~~~----~~~~l~~~~~~~---------------------------------------------g~~~~a~~~~~~~ 235 (468)
. +|.. ..|.|+.+-... +..+.+.++...+
T Consensus 255 ~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 255 P-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred C-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 3 2221 122222111110 1111111111111
Q ss_pred cCCC-cchHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------Hhhhh
Q 012234 236 KGRS-LIIWTAIISAY--AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN--------AMSGQ 304 (468)
Q Consensus 236 ~~~~-~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~ 304 (468)
.... ...+..++... ++...+..+.+++...-+....-........++.....|+++.|..++. .+.+-
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 1111 12334444322 2223466777777766554222224455666777888999999999998 44322
Q ss_pred cCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKM--------PVKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
+ ..+.+...+...+.+.++.+.|..++.+. ...+. ..++.-++..-.++|+-++|..+++++++.+|+
T Consensus 414 -~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 414 -K--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred -c--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 3 33445566777788877766666665544 11221 233444445556789999999999999999999
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
+..+...++.+|++. +.+.|..+-+.+
T Consensus 491 d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999987 677787775443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-11 Score=114.50 Aligned_cols=265 Identities=17% Similarity=0.196 Sum_probs=195.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC
Q 012234 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239 (468)
Q Consensus 160 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 239 (468)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. .+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999999 9999999888889999999999988888877665 677
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHH
Q 012234 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319 (468)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 319 (468)
..+|..|..+|..+|+... ++..++ ....+...+...|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999876 333332 223355566777776666667666543334455544 3555
Q ss_pred HHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 320 VLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI-SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
...-.|-++.+++++..++...........+.-+.. ...+++-...++...+ .+++.+|..+..+-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHH
Confidence 667778899999999988622111111112333332 3344444445554444 4588999999999999999999999
Q ss_pred HHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCcchhhh
Q 012234 399 VREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDEVEEE 464 (468)
Q Consensus 399 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ 464 (468)
++.+|++.|++..++.-|..+.+ ..+. .-++.+.+-|++.|+.|+.+|--+
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~~~~-------q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------INAA-------QVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------Cccc-------hHHHHHHHHHHHhcCCCCcchhHH
Confidence 99999999999999988875433 1111 123467888999999999998644
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-10 Score=110.09 Aligned_cols=333 Identities=13% Similarity=0.142 Sum_probs=175.0
Q ss_pred HHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 012234 28 LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKD 107 (468)
Q Consensus 28 ~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 107 (468)
++..+. ..|+.|+..||..+|..|+..|+.+.|- +|..|.-...+.+...++.++......++.+.+. +|.
T Consensus 12 fla~~e-~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHE-ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHH-HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 344454 5666677777777777777777776666 6666666666666666666666666666665554 556
Q ss_pred eehHHHHHHHHHhcCCHHH---HHH--------------------HHhhCCC-C-CHhHHHHHHHHHHhCCChHHHHHHH
Q 012234 108 EVSYSAIISGYMVHGFVEK---AMD--------------------LFQVMKR-P-GLSTWNAVISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~---A~~--------------------~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (468)
+.+|..|..+|...|++.. ..+ ++..+.- | ....-...+......|-++.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777666543 222 1111110 0 0001112233344455566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc--
Q 012234 163 REMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL-- 240 (468)
Q Consensus 163 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 240 (468)
..+..... +. ++...++-+.... .-.+++........-.|++.++..+++.-..+|+.+.|..++.+|.+.+.
T Consensus 163 ~~~Pvsa~--~~-p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 163 AKVPVSAW--NA-PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hhCCcccc--cc-hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 54432210 00 1111233332222 22233333322221157777777777777778888888888888776543
Q ss_pred --chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHH
Q 012234 241 --IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318 (468)
Q Consensus 241 --~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 318 (468)
.-|-.++-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|....+.. | .+....+++-+
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e---------~-sq~~hg~tAav 304 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE---------G-SQLAHGFTAAV 304 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc---------c-cchhhhhhHHH
Confidence 223333333 66777777777777778888888877777776666444111111 1 22222222222
Q ss_pred HHHhccCChHHHHHHHHh---------CC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCcch
Q 012234 319 GVLSRARRISEATEFVSK---------MP------VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI----EPENTGN 379 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~---------~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 379 (468)
..-.-.| ..|.+.+++ .+ ..-...+|. +..-...+|.-++.+++-..+... .+.+...
T Consensus 305 rsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 305 RSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 2222222 222222211 11 111123332 233333478888888877776543 4556677
Q ss_pred HHHHHHHHHHc
Q 012234 380 YIIMANLYSQA 390 (468)
Q Consensus 380 ~~~l~~~~~~~ 390 (468)
|..++.-|.+.
T Consensus 382 ~~~~lrqyFrr 392 (1088)
T KOG4318|consen 382 FGALLRQYFRR 392 (1088)
T ss_pred HHHHHHHHHHH
Confidence 77777777764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.5e-13 Score=83.26 Aligned_cols=50 Identities=32% Similarity=0.620 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhc
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ 54 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 54 (468)
||+.+||++|.+|++.|++++|.++|++|. +.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~-~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK-KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHcC
Confidence 889999999999999999999999999998 88899999999999988864
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-11 Score=100.73 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=154.2
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcC
Q 012234 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHG 254 (468)
Q Consensus 178 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g 254 (468)
+.+.++|.+.|.+.+|...++...+. .|.+.+|..|..+|.+..+...|+.++.+-.+. ++....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 44556666666666666666655554 344445555666666666666666666655442 2223334455666667
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFV 334 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 334 (468)
+.++|.++++...+.. +.+.....++...|...++.+-|+.+++++..- |+ .++..|+.+.-+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777777777766642 334455555666667777777777777777754 43 34566666776777777777777766
Q ss_pred HhCC---CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 335 SKMP---VKPS--AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 335 ~~~~---~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
++.. ..|+ ..+|..+.......||+..|.+.|+-++..+|++...++.|+-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 6552 2233 5688888888889999999999999999999999999999999999999999999999887654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-10 Score=110.05 Aligned_cols=261 Identities=13% Similarity=-0.001 Sum_probs=183.7
Q ss_pred CHhHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------ccCChhhHHHHHHHHHH
Q 012234 138 GLSTWNAVISGLVQ-----NNRHEAVLDLVREMQASGVRPN-AVTISSIFSLFS---------HFSNLKGGKEIHGYAVK 202 (468)
Q Consensus 138 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 202 (468)
+...|...+.+... .+..++|+..|++..+. .|+ ...+..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555322 13467899999999876 454 345555554443 23457899999999988
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 012234 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP-VTF 278 (468)
Q Consensus 203 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~ 278 (468)
.+ +.+...+..+...+...|++++|...|++..+. +...+..+..++...|++++|...+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 456677888888899999999999999997763 3457888888999999999999999999886 3432 233
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHH
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-VKPS-AKVWGALLYGASI 355 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~ 355 (468)
..++..+...|++++|...++++.+. .+| ++..+..+..++...|+.++|...+.++. ..|+ ....+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999988753 234 45556778888899999999999999873 4444 3445555556677
Q ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.| +.|...++++.+..-..+.....+...|.-.|+-+.+..+ +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 77 4777777777665322222223366677778888877777 88877654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-10 Score=100.04 Aligned_cols=192 Identities=13% Similarity=0.050 Sum_probs=132.6
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHH
Q 012234 42 GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGY 118 (468)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 118 (468)
...+..+...+...|+++.|...++++.+..+ .+...+..+...+...|++++|.+.+++..+ .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 44566666667777777777777777766542 2455666677777777777777777776654 2344566666777
Q ss_pred HhcCCHHHHHHHHhhCCC-----CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 012234 119 MVHGFVEKAMDLFQVMKR-----PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG 193 (468)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 193 (468)
...|++++|...|++... .....+..+..++...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777653 123456667777888888888888888877653 33455677777788888888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012234 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236 (468)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 236 (468)
...++...+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888887776 24455566667777778888888888766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-10 Score=110.06 Aligned_cols=257 Identities=10% Similarity=0.029 Sum_probs=177.8
Q ss_pred CCcchHHHHHHHhh-----ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH---------hCCCHHHHHHHHhhcCC
Q 012234 40 PDGVTVVSVLQACG-----QSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYA---------KCGSLDYARALLDEMSD 105 (468)
Q Consensus 40 ~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~ 105 (468)
.+...|...+++.. ..+++++|...+++.++..+. +...+..+..++. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555555555531 124567899999999887643 4556666665544 23458899999988776
Q ss_pred C---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHH
Q 012234 106 K---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA-VTIS 178 (468)
Q Consensus 106 ~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~ 178 (468)
. +..++..+...+...|++++|...|++..+ |+ ...+..+...+...|++++|+..+++..+.+ |+. ..+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHH
Confidence 3 566788888888899999999999998765 43 4578888889999999999999999998864 432 2333
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCC
Q 012234 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGD 255 (468)
Q Consensus 179 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~ 255 (468)
.++..+...|++++|...++.+.+...+.++..+..+..++...|++++|...+.++....+ ...+.+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 44445667889999999999888765333555677788889999999999999998765433 34556666667777
Q ss_pred hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhh
Q 012234 256 ASKAVSLFNEMLNN-GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304 (468)
Q Consensus 256 ~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (468)
+.|...++.+.+. ...+....+..+ .+.-.|+.+.+..+ +++.+.
T Consensus 490 -~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 490 -ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhcc
Confidence 4777777776553 122222223333 34445666666555 777653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-09 Score=91.99 Aligned_cols=394 Identities=11% Similarity=0.063 Sum_probs=220.2
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 92 (468)
+.-+..++++..|+.+++--. ..+-.-...+-..+..++.+.|++++|...+..+.+.. .++...+..|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 344556778899999888765 33211112223334445568899999999999887754 5566666677777777888
Q ss_pred HHHHHHHHhhcCCC---------------Cee--------------hHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhH
Q 012234 93 LDYARALLDEMSDK---------------DEV--------------SYSAIISGYMVHGFVEKAMDLFQVMKR--PGLST 141 (468)
Q Consensus 93 ~~~A~~~~~~~~~~---------------~~~--------------~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~ 141 (468)
+.+|..+-....+. |.. .-.+|.+.....-.+.+|++++.+... |+-..
T Consensus 107 Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 88888887766531 111 111223333333456667777777664 33334
Q ss_pred HHHH-HHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhhHHHH--------------HHHHHHcCC
Q 012234 142 WNAV-ISGLVQNNRHEAVLDLVREMQASGVRPNAV-TISSIFSLFSHFSNLKGGKEI--------------HGYAVKNRY 205 (468)
Q Consensus 142 ~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~--------------~~~~~~~~~ 205 (468)
.|.- .-+|.+..-++-+.++++-.++. .||+. ..+..+....+.=+-..|.+- .+.+.+.++
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 4433 34566777777777777776654 34432 222222222221111111111 111111110
Q ss_pred ------------CC-----chhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCC-------hHHHHH
Q 012234 206 ------------DR-----NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD-------ASKAVS 261 (468)
Q Consensus 206 ------------~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~ 261 (468)
-| -+..-..|+-.|.+.++.++|..+.+++....+.-|-.-.-.++..|+ ..-|..
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 00 111223344556677777777777777766555444333333333332 334444
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCC
Q 012234 262 LFNEMLNNGIQPDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVK 340 (468)
Q Consensus 262 ~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 340 (468)
.|+-.-+++..-|.. ---++..++.-..++++.+.++..+..- =...|...+ .+.++++..|.+.+|+++|-++..+
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 444333333332321 1222334444455677777777777642 233344444 4788889999999999999887411
Q ss_pred --CCHHHHH-HHHHHHHHcCChHHHHHHHHHHHhhC-CCCcc-hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCcee
Q 012234 341 --PSAKVWG-ALLYGASISGDVELGKFVCDHLFEIE-PENTG-NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRS 415 (468)
Q Consensus 341 --~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 415 (468)
.|..+|. .|..+|.+.+.++.|..++- +.+ |.+.. ....++..|.+++.+=-|.+.|+.+.... |+|. .
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pE-n 496 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPE-N 496 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcc-c
Confidence 2444554 45567788899988877653 343 33322 33455778889999988888898887654 4343 3
Q ss_pred EEE
Q 012234 416 WIE 418 (468)
Q Consensus 416 ~~~ 418 (468)
|-.
T Consensus 497 WeG 499 (557)
T KOG3785|consen 497 WEG 499 (557)
T ss_pred cCC
Confidence 653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-12 Score=79.40 Aligned_cols=50 Identities=28% Similarity=0.588 Sum_probs=46.9
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-08 Score=95.42 Aligned_cols=286 Identities=13% Similarity=0.070 Sum_probs=157.7
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC--
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC-- 90 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 90 (468)
...+...|++++|++.++.-. ..+.............+.+.|+.++|..++..+++.++. +...|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 456678999999999998865 234344455667788889999999999999999999854 666777777776333
Q ss_pred ---CCHHHHHHHHhhcCCC--CeehHHHHHHHHHhcCCHHH-HHHHHhhCCCCCH-hHHHHHHHHHHhCCChHHHHHHHH
Q 012234 91 ---GSLDYARALLDEMSDK--DEVSYSAIISGYMVHGFVEK-AMDLFQVMKRPGL-STWNAVISGLVQNNRHEAVLDLVR 163 (468)
Q Consensus 91 ---g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 163 (468)
.+.+....+|+++.+. ...+...+.-.+..-..+.. +...+..+...++ .+|+.|-..|....+..-..+++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 2567778888877542 11111111111111111211 2222233333332 344444444544444444444444
Q ss_pred HHHHC----C----------CCCCH--HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 012234 164 EMQAS----G----------VRPNA--VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227 (468)
Q Consensus 164 ~m~~~----~----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 227 (468)
..... + -.|+. .++..+...|...|++++|...++..++.. +..+..|..-...|-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 43321 0 01222 233444555666666666666666666653 2224555555666666666666
Q ss_pred HHHHHhhccCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHhccCCHHHHHH
Q 012234 228 AQRVFDRFKGRS---LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV--------TFTAVLSACAHSGLVDKAWD 296 (468)
Q Consensus 228 a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--------~~~~l~~~~~~~~~~~~a~~ 296 (468)
|.+.++...+-| -..-+..+..+.+.|++++|.+++......+..|... -......+|.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 666666555432 2344445556666666666666666655544322211 11233445666666666655
Q ss_pred HHHHhh
Q 012234 297 IFNAMS 302 (468)
Q Consensus 297 ~~~~~~ 302 (468)
.|..+.
T Consensus 327 ~~~~v~ 332 (517)
T PF12569_consen 327 RFHAVL 332 (517)
T ss_pred HHHHHH
Confidence 554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-07 Score=83.35 Aligned_cols=282 Identities=11% Similarity=0.008 Sum_probs=194.9
Q ss_pred HhcCCHHHHHHHHhhCC-----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhh
Q 012234 119 MVHGFVEKAMDLFQVMK-----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV-TISSIFSLFSHFSNLKG 192 (468)
Q Consensus 119 ~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~ 192 (468)
+..++...|...+-.+. ..|+.....+..++...|+.++|+..|++.+.. .|+.. ..-...-.+.+.|+.+.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 34455555554443332 256677888889999999999999999888764 34332 22222333456777777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 193 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
...+...+.... ..+...+-.-.......++++.|+.+-++..+.+. ..+-.-..++...|++++|.-.|+.....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 777776666543 11222222233444566788888888888766444 44444456788889999999999888764
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHH-HHH-hccCChHHHHHHHHhC-CCCCC-HHH
Q 012234 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV-GVL-SRARRISEATEFVSKM-PVKPS-AKV 345 (468)
Q Consensus 270 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~~~~~~A~~~~~~~-~~~~~-~~~ 345 (468)
-+-+..+|..|+.+|...|.+.+|...-+...+. ++.+..+...+. ..+ .....-++|.+++++. ...|+ ...
T Consensus 364 -ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 364 -APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred -chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 1345678999999999999999988887777653 344555555442 222 2334467888888876 56776 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 346 WGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.+.+...|...|..+.++.++++.+...|+ ...+..|++.+...+.+.+|...|....+..
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 677788888999999999999999888774 4788899999999999999999988876544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-09 Score=98.70 Aligned_cols=267 Identities=13% Similarity=0.050 Sum_probs=127.4
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHH
Q 012234 52 CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAM 128 (468)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~ 128 (468)
|-..+++....++.+...+.. ++....+..-|.++...|+..+-.-+=.++.+ | .+.+|-++.--|.-.|+..+|.
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHH
Confidence 334445555555555544443 22333333444444444444443333333332 1 2344444444444445555555
Q ss_pred HHHhhCCCCCH---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 012234 129 DLFQVMKRPGL---STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205 (468)
Q Consensus 129 ~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 205 (468)
+.|.+...-|. ..|-.+...|.-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.|.++|.++....
T Consensus 333 ry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~- 410 (611)
T KOG1173|consen 333 RYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA- 410 (611)
T ss_pred HHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-
Confidence 55544433221 23444444455555555555444443321 01111112222233444444444444444444332
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC----C--CCCCHHHHH
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN----G--IQPDPVTFT 279 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~--~~p~~~~~~ 279 (468)
+. |+...+-+.-.....+.+.+|..+|+..... + ..--..+++
T Consensus 411 P~-------------------------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 411 PS-------------------------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred CC-------------------------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 22 3344444444444445555555555544311 0 011334566
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGAS 354 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~ 354 (468)
.|..+|.+.+.+++|+..+++... -.+.+..++.++.-.|...|+++.|++.|.+. ...|+-.+...++..+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 666777777777777777776664 22345666666666777777777777777665 35666555555555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-09 Score=90.69 Aligned_cols=268 Identities=13% Similarity=0.018 Sum_probs=197.0
Q ss_pred CeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhH---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012234 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLST---WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSL 183 (468)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 183 (468)
|......+...+...|+.++|+..|++..-.|+.+ .....-.+.+.|+.++...+...+.... .-+...+..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 56667778888888888888888888776544332 2222334567788888888887776542 2233334344445
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHH
Q 012234 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAV 260 (468)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 260 (468)
....++++.|..+-++.++.. +.+...+-.-...+...|+.++|.-.|+.... .+..+|.-|+..|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 566778888888888777765 33444555455777888999999888887654 46689999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 261 SLFNEMLNNGIQPDPVTFTAVL-SACA-HSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
-.-+..... ++.+..+...+. ..|. ....-++|.+++++.. .+.|+ ....+.+...+.+.|...+++.++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 887776654 344566665552 3333 2334578999999877 45775 345667778889999999999999887
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 338 -PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 338 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
...||....+.|.+.+...+.+++|.+.|..++..+|.+..+.
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 5789999999999999999999999999999999999876443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-09 Score=97.69 Aligned_cols=396 Identities=12% Similarity=0.048 Sum_probs=239.3
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCC-chHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKM-DLWICNAL 83 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 83 (468)
|...|..|.-++.+.|+++.+.+.|++.. . +.--....|+.+...+...|.-..|..+++........| +...+-..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~-~-~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQAL-P-FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-H-hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 55667777777788888888888888876 2 223455667777777777777777888777766554333 33333333
Q ss_pred HHHHH-hCCCHHHHHHHHhhcCC--------CCeehHHHHHHHHHhc-----------CCHHHHHHHHhhCCC---CCHh
Q 012234 84 IGMYA-KCGSLDYARALLDEMSD--------KDEVSYSAIISGYMVH-----------GFVEKAMDLFQVMKR---PGLS 140 (468)
Q Consensus 84 ~~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~~~~---~~~~ 140 (468)
-..|. +.|..++++.+-.+... -.+..|..+.-+|... ....++++.+++..+ .|..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 33333 34555655555444432 1344555555444322 122346666666643 2222
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (468)
+.-.+.--|+-.++.+.|....++..+.+-.-+...+..+.-.+...+++..|..+.+.....- ..|......-++.-.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhh
Confidence 2222233455667788888888888776556667777777777777888888888777665421 011000011111112
Q ss_pred hcCChHHHHHHHhhccC----------------------------C---C-cchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKG----------------------------R---S-LIIWTAIISAYAAHGDASKAVSLFNEMLN 268 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~----------------------------~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 268 (468)
..++.++++.....+.. + + +.++..+.......+ ..+..-.. +..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~ 635 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPS 635 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCc
Confidence 23333333332221110 0 0 111111111111000 00000000 111
Q ss_pred CCCC--CCH------HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CC
Q 012234 269 NGIQ--PDP------VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PV 339 (468)
Q Consensus 269 ~~~~--p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 339 (468)
.-+. |+. ..+......+.+.++.++|...+.+..+ ..+-....|......+...|.+.+|.+.|... ..
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 1111 221 2344556677888899999988888874 23345677877788889999999999988876 45
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 340 KPS-AKVWGALLYGASISGDVELGKF--VCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 340 ~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.|+ +....++...+...|+...|.. ++..+++.+|.++.+|..++.++.+.|+.++|.+-|........
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 664 7788999999999998888877 99999999999999999999999999999999999998877543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-08 Score=90.90 Aligned_cols=394 Identities=12% Similarity=0.087 Sum_probs=215.8
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (468)
..|..++..| ..+++...+.+.+.+.+. .+-...|.....-.+...|+.++|.......++.++. +...|+.+.-.
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHH
Confidence 3445555544 346777777777777632 2333444444444455567777777776666664433 55667766666
Q ss_pred HHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHH
Q 012234 87 YAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLD 160 (468)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~ 160 (468)
+....++++|++.|..... + |...|.-+.-.-++.|+++.....-....+ | ....|..++.++.-.|+...|..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777776543 2 344444444444455555554444444433 2 22345555555556666666666
Q ss_pred HHHHHHHCC-CCCCHHHHHHHH------HHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 012234 161 LVREMQASG-VRPNAVTISSIF------SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233 (468)
Q Consensus 161 ~~~~m~~~~-~~p~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 233 (468)
++++..+.. -.|+...|.-.. ......|..+.|.+.+..-...- ......-..-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 666655442 133433332221 12234455555554444332211 0111111223344555555666666655
Q ss_pred hccCCCc--chHHH-HHHHHHH-c----------------------------------CChHHHHHHHHHHHHCCCCCCH
Q 012234 234 RFKGRSL--IIWTA-IISAYAA-H----------------------------------GDASKAVSLFNEMLNNGIQPDP 275 (468)
Q Consensus 234 ~~~~~~~--~~~~~-l~~~~~~-~----------------------------------g~~~~a~~~~~~m~~~~~~p~~ 275 (468)
.+..+++ ..|.. +..++.+ . .-.+....++..+.+.|+++--
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf 323 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF 323 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh
Confidence 5554333 11111 1112111 1 1122233344555555554422
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhc-C------------CCCCHhHH--HHHHHHHhccCChHHHHHHHHhC-CC
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQY-G------------IQPSVEHY--ACMVGVLSRARRISEATEFVSKM-PV 339 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~------------~~p~~~~~--~~l~~~~~~~~~~~~A~~~~~~~-~~ 339 (468)
.. +...|-.-...+-.+++.-.+.... | -+|....| -.++..+-+.|+++.|..+++.. ..
T Consensus 324 ~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 324 KD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred hh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 22 2222221111111111111111100 1 14555444 45678889999999999999987 45
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 340 KPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 340 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.|+ +..|..-.+.+...|++++|...++++.+++.+|...-..-+.-..++++.++|.++....-+.|.
T Consensus 401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 666 446666678899999999999999999999877765555677888899999999999999988775
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-08 Score=92.10 Aligned_cols=174 Identities=11% Similarity=0.069 Sum_probs=127.4
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (468)
..|-..+..+.++|+...-...|+..+....+......|...+......+-++.+..+++.-++..+ ..-+-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP----EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHH
Confidence 4577777888899999999999999886666666677899999999899999999999999887543 335677888
Q ss_pred HHhCCCHHHHHHHHhhcCCC----------CeehHHHHHHHHHhcCCH---HHHHHHHhhCCC--CCH--hHHHHHHHHH
Q 012234 87 YAKCGSLDYARALLDEMSDK----------DEVSYSAIISGYMVHGFV---EKAMDLFQVMKR--PGL--STWNAVISGL 149 (468)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~---~~A~~~~~~~~~--~~~--~~~~~l~~~~ 149 (468)
+++.+++++|.+.+..+... +-..|.-+-....++-+. -....+++.+.. +|. ..|++|...|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 89999999999999988753 223455555555444332 224455555554 443 4789999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 150 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
.+.|.+++|..+|++.+.. ..+..-|..+..+|+.
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 9999999999999998775 3344445555555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-08 Score=87.97 Aligned_cols=359 Identities=12% Similarity=0.022 Sum_probs=233.3
Q ss_pred CCC-cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCC-cchHHHHHHHhhccCChHHHHHHHHHHH-HhCCCCchHH
Q 012234 3 KRD-IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPD-GVTVVSVLQACGQSSDIVFGMEVHNFVI-ESHIKMDLWI 79 (468)
Q Consensus 3 ~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~ 79 (468)
.|| ++-|.....+|...|+|+++.+--...+ + +.|+ +..+..=.+++-..|++++|+.=..... -.|+. +..+
T Consensus 145 ~p~epiFYsNraAcY~~lgd~~~Vied~TkAL-E--l~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~ 220 (606)
T KOG0547|consen 145 CPDEPIFYSNRAACYESLGDWEKVIEDCTKAL-E--LNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASI 220 (606)
T ss_pred CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh-h--cCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchh
Confidence 466 7778999999999999999998888777 5 3455 3345555566677788877764332221 11221 2221
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC---CC-----------------------eehHHHHHHHHHh--cC---CHHHHH
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSD---KD-----------------------EVSYSAIISGYMV--HG---FVEKAM 128 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-----------------------~~~~~~li~~~~~--~~---~~~~A~ 128 (468)
--.+=+.+-+.|. ..+.+-+.+-.. |+ ..+...+..++.. .+ .+..|.
T Consensus 221 ~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~ 299 (606)
T KOG0547|consen 221 EPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAY 299 (606)
T ss_pred HHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHH
Confidence 1111111111111 112222221111 11 1112222222110 11 233333
Q ss_pred HHHhhCCC-------CC---H------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh
Q 012234 129 DLFQVMKR-------PG---L------STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192 (468)
Q Consensus 129 ~~~~~~~~-------~~---~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 192 (468)
..+.+-.. .+ . .+.......+.-.|+.-.|..-|+..+.....++. .|..+...|....+.++
T Consensus 300 ~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~ 378 (606)
T KOG0547|consen 300 DKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEK 378 (606)
T ss_pred HHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHH
Confidence 33322211 11 1 12222222345578999999999999987533333 38888889999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS---LIIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 193 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
....|..+.+.+ +-++.+|.--..++.-.+++++|..-|++...-+ +..|-.+.-+..+.+++++++..|++.+.+
T Consensus 379 ~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk 457 (606)
T KOG0547|consen 379 MWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK 457 (606)
T ss_pred HHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887 5566677767777888899999999999987644 456666667777889999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-------H--hHHHHHHHHHhccCChHHHHHHHHhC-CC
Q 012234 270 GIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-------V--EHYACMVGVLSRARRISEATEFVSKM-PV 339 (468)
Q Consensus 270 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------~--~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 339 (468)
++--+..|+.....+...++++.|.+.|+..+. +.|+ + .+-..++ .+.-.+++..|+.++++. ..
T Consensus 458 -FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 458 -FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred -CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHcc
Confidence 555678899999999999999999999999874 3443 1 1111222 122348999999999988 45
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 012234 340 KPS-AKVWGALLYGASISGDVELGKFVCDHLFEIE 373 (468)
Q Consensus 340 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 373 (468)
.|. ...+..|...-.+.|+.++|+++|++...+-
T Consensus 533 Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 533 DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 554 6789999999999999999999999987663
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-10 Score=94.60 Aligned_cols=231 Identities=11% Similarity=0.080 Sum_probs=189.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 012234 143 NAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222 (468)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (468)
+.+.++|.+.|-+.+|.+.++..+.. .|-+.||..|-+.|.+..++..|..++.+-.+.- +.++.......+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56788999999999999999888776 6677788889999999999999999988877753 44555555677888888
Q ss_pred CChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012234 223 GFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299 (468)
Q Consensus 223 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (468)
++.++|.++|+...+ .++.+...+...|.-.++++-|+..++++.+.|+. +...|+.+.-+|...++++-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998776 34556666677888899999999999999999876 77888888889999999999999998
Q ss_pred HhhhhcCCCCC--HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 300 AMSGQYGIQPS--VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 300 ~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
+.... .-.|+ ..+|..+.......|++.-|.+.|+-.- ...+...++.|.-.-.+.|+++.|..++..+....|.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88764 33343 4678888888889999999999998763 2335788999999999999999999999999988886
Q ss_pred Ccc
Q 012234 376 NTG 378 (468)
Q Consensus 376 ~~~ 378 (468)
-..
T Consensus 462 m~E 464 (478)
T KOG1129|consen 462 MAE 464 (478)
T ss_pred ccc
Confidence 433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-09 Score=96.08 Aligned_cols=88 Identities=16% Similarity=0.046 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 012234 213 TAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHS 288 (468)
Q Consensus 213 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~ 288 (468)
..+...|...|+.++|...|++..+ .++..|+.+...+...|++++|...|++..+. .| +...+..+..++...
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 3344444444444444444444432 12234555555555555555555555555443 22 233444444445555
Q ss_pred CCHHHHHHHHHHhh
Q 012234 289 GLVDKAWDIFNAMS 302 (468)
Q Consensus 289 ~~~~~a~~~~~~~~ 302 (468)
|++++|.+.|++..
T Consensus 146 g~~~eA~~~~~~al 159 (296)
T PRK11189 146 GRYELAQDDLLAFY 159 (296)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-08 Score=84.25 Aligned_cols=307 Identities=14% Similarity=0.114 Sum_probs=161.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHH---HHHHhcCCHHHHHHHHhhCCC--CCHhH-HHHHHHHH
Q 012234 76 DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAII---SGYMVHGFVEKAMDLFQVMKR--PGLST-WNAVISGL 149 (468)
Q Consensus 76 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~l~~~~ 149 (468)
++.-.--+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-|....+ ||-.. --.-...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 3444445777777888888888888888888887777665 356777777777777777665 44321 11223467
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 012234 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229 (468)
Q Consensus 150 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 229 (468)
.++|.+++|..-|+..++.. |+..+- ..+..+.-..++-.. ....+..+...|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHH
Confidence 78888888888888887763 322110 011111100011000 011122233344555555
Q ss_pred HHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 230 RVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 230 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
.....+.+ .+...+..-..+|...|++..|+.=++...+.. .-+..++.-+-..+...|+.+.++...++.. .
T Consensus 176 ~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---K 251 (504)
T KOG0624|consen 176 EMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---K 251 (504)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---c
Confidence 55444443 233344444455555555555554444433321 1123333333344444555555555444444 2
Q ss_pred CCCCHhH----HHH---H------HHHHhccCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHH
Q 012234 307 IQPSVEH----YAC---M------VGVLSRARRISEATEFVSKM-PVKPS-----AKVWGALLYGASISGDVELGKFVCD 367 (468)
Q Consensus 307 ~~p~~~~----~~~---l------~~~~~~~~~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (468)
+.||... |.. + +....+.++|.++++-.+.. +..|. ...+..+-.++...|++.+|++.+.
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 2343211 110 0 11223445565555555443 23333 1122333344556677777777777
Q ss_pred HHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 368 HLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++++.+|+|..++..-+.+|.-...+++|+.-|+...+..
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777776665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-09 Score=98.19 Aligned_cols=224 Identities=17% Similarity=0.209 Sum_probs=149.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCC----------Cee-hHHHHHHHHHhcCCHHHHHHHHhhCCC----------C
Q 012234 79 ICNALIGMYAKCGSLDYARALLDEMSDK----------DEV-SYSAIISGYMVHGFVEKAMDLFQVMKR----------P 137 (468)
Q Consensus 79 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~----------~ 137 (468)
+...+...|...|+++.|+.+++...+. ... ..+.+...|...+++++|..+|+++.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666666666666666666554431 111 223345566666777776666666542 2
Q ss_pred C-HhHHHHHHHHHHhCCChHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHccCChhhHHHHHHHHHHc---CCC
Q 012234 138 G-LSTWNAVISGLVQNNRHEAVLDLVREMQAS-----GV-RPNAV-TISSIFSLFSHFSNLKGGKEIHGYAVKN---RYD 206 (468)
Q Consensus 138 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 206 (468)
. ..+++.|...|.+.|++++|...+++..+- |. .|... .++.+...|...+.+++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 235777777888888888877777765431 21 22222 3556667788888888888887766552 112
Q ss_pred C----chhHHHHHHHHHHhcCChHHHHHHHhhccCC--------C---cchHHHHHHHHHHcCChHHHHHHHHHHHH---
Q 012234 207 R----NIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--------S---LIIWTAIISAYAAHGDASKAVSLFNEMLN--- 268 (468)
Q Consensus 207 ~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--- 268 (468)
+ -..+++.|...|...|++++|.++|+++.+. + ...++.|...|.+.+++.+|..+|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 2357888999999999999999999887641 1 24678888899999999999988877543
Q ss_pred -CCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 269 -NGI-QPD-PVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 269 -~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
.|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 223 4678889999999999999998887765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-08 Score=89.82 Aligned_cols=217 Identities=12% Similarity=-0.027 Sum_probs=141.1
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 012234 153 NRHEAVLDLVREMQASG-VRPN--AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ 229 (468)
Q Consensus 153 g~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 229 (468)
++.+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|....+.. +.+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 1222 2345566667777788888887777777765 345677777888888888888888
Q ss_pred HHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 230 RVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 230 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
..|++..+- +..+|..+..++...|++++|.+.|++..+. .|+..........+...++.++|...|.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 888877652 3457777888888889999999999888875 34432222222234456788999998876553 2
Q ss_pred CCCCHhHHHHHHHHHhccCChH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 307 IQPSVEHYACMVGVLSRARRIS--EATEFVSKM-PV----KP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~--~A~~~~~~~-~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
..|+...+ .+...+ .|+.. ++.+.+.+. .. .| ....|..+...+...|++++|+..|+++.+.+|++.
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23433222 233222 34433 333333321 11 11 346788999999999999999999999999997553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.9e-08 Score=80.09 Aligned_cols=385 Identities=10% Similarity=0.014 Sum_probs=247.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHH-HHHHH
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN-ALIGM 86 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~ 86 (468)
.+++.+..+.+..++.+|++++..-. +.. +.+....+.+..+|-+..++..|-..++++...-++ ..-|. .-...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~-Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSEL-ERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHH-hcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHH
Confidence 36777888889999999999999887 543 347777888888889999999999999998876433 33332 23556
Q ss_pred HHhCCCHHHHHHHHhhcCCCC-eehHHHHHH--HHHhcCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHhCCChHHHHHHH
Q 012234 87 YAKCGSLDYARALLDEMSDKD-EVSYSAIIS--GYMVHGFVEKAMDLFQVMKR-PGLSTWNAVISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~--~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (468)
+.+.+.+..|+++...|.+.+ ...-..-+. .....+++..+..++++.+. .+..+.+.......+.|+++.|++-|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 678899999999999888742 211111122 23467889999999999984 66777777778888999999999999
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchh----------------------------HHH
Q 012234 163 REMQAS-GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY----------------------------VAT 213 (468)
Q Consensus 163 ~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------~~~ 213 (468)
+...+- |..| ...|+..+ +..+.|+...|.+...+++++|++..+. .+|
T Consensus 168 qaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 998875 4444 45666554 5567899999999999999887642211 112
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCC-----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGR-----SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (468)
.-...+.+.|+++.|.+.+-.|+.+ |+++...+.-.- ..+++.+..+-+.-+..... -...||..++-.||++
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 2223345778888898888888753 666666654332 23445555555555555533 3456788888889998
Q ss_pred CCHHHHHHHHHHhhhhcCCC-CCHhHHHHHHHHHh-ccCChHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC----hHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQ-PSVEHYACMVGVLS-RARRISEATEFVSKMPVKPSAKVWGALLYGA-SISGD----VEL 361 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g~----~~~ 361 (468)
.-++.|-.++.+-... ... .+...|+ |++++. ..-..++|.+-+..+...-....-...+..- .+..+ ...
T Consensus 324 eyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred HHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8888888777653321 111 1233343 334433 3345666666655542000000000011111 11111 123
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+++-+++.+++.- .+...-++.|++..++.-+.++|+.-.+
T Consensus 402 ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 402 AVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 3344444444431 1344567788899999999999877654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-09 Score=85.49 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=108.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVL 321 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 321 (468)
...+.-.|.+.|++..|..-+++..+.. +-+..++..+...|.+.|..+.|.+-|++..+ +.| +..+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence 3445556677777777777777776652 22345666666667777777777777777663 234 456666666667
Q ss_pred hccCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHH
Q 012234 322 SRARRISEATEFVSKMPVKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 397 (468)
|..|++++|...|++....|. ..+|..+..+..+.|+.+.|...+++.++.+|+.+.....+++.....|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777776632332 4566777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCC
Q 012234 398 RVREQMKESGL 408 (468)
Q Consensus 398 ~~~~~m~~~~~ 408 (468)
.+++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 77777666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8e-07 Score=81.43 Aligned_cols=356 Identities=11% Similarity=0.069 Sum_probs=205.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHH--hcC
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM--VHG 122 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~~ 122 (468)
.-+=++.+...|++++|.+...+++..+ +-+...+..-+-+++..+++++|+.+.+.-........-.+=.+|| +.+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 3344566778899999999999999987 4466777778888999999999997766544321111111344554 789
Q ss_pred CHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---------------------------HH
Q 012234 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN---------------------------AV 175 (468)
Q Consensus 123 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------------------~~ 175 (468)
..++|+..++...+.+..+...-...+-+.|++++|+.+|+.+.+++..-- ..
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 999999999976666655666667888999999999999999976542210 11
Q ss_pred HHHHHHH---HHHccCChhhHHHHHHHHHHcCC-------CCch-------hHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012234 176 TISSIFS---LFSHFSNLKGGKEIHGYAVKNRY-------DRNI-------YVATAIIDTYAKTGFLHGAQRVFDRFKGR 238 (468)
Q Consensus 176 ~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (468)
+|..+.+ .+...|++.+|+++++...+.+. ..+. .+-..|.-++-..|+.++|..++..+.+.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 2333222 23345667777777666622110 0000 01122344455667777777766655442
Q ss_pred Cc-------chHHHHHHHHH---------------------------------------------HcCChHHHHHHHHHH
Q 012234 239 SL-------IIWTAIISAYA---------------------------------------------AHGDASKAVSLFNEM 266 (468)
Q Consensus 239 ~~-------~~~~~l~~~~~---------------------------------------------~~g~~~~a~~~~~~m 266 (468)
+. ..-|.++..-. ..+.-+.+.++....
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 11 00011100000 000000000000000
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHH--------
Q 012234 267 LNNGIQPDPVTFTAVLSACAHS--GLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVS-------- 335 (468)
Q Consensus 267 ~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~-------- 335 (468)
.+..|. ..+..++..+.+. .....+..++...-+. .+-. ..+.-.++......|+++.|.+++.
T Consensus 334 --p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 334 --PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred --CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 011111 2222233222211 1244555555555432 1222 3445566677788999999999888
Q ss_pred hCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 336 KMP-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI----EPE---NTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 336 ~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.+. ..-.+.+...+...+.+.++.+.|..++..+... .+. -..++..++..-.+.|+-++|..+++++.+.
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 332 3334556666777777888887788888777654 121 2234445556666789999999999999874
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.6e-07 Score=82.45 Aligned_cols=378 Identities=11% Similarity=0.087 Sum_probs=203.9
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Q 012234 17 SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 96 (468)
...|+-++|.+..+... +.. ..+.+.|+.+.-.+....++++|++.|..++..+.. |..++.-+.-.-+..|+++..
T Consensus 52 ~~lg~~~ea~~~vr~gl-r~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGL-RND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHh-ccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhH
Confidence 34566666666666665 322 344555666665555666666777776666665532 555666555555556666655
Q ss_pred HHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCHhHHHHH------HHHHHhCCChHHHHHHH
Q 012234 97 RALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR-----PGLSTWNAV------ISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 97 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l------~~~~~~~g~~~~a~~~~ 162 (468)
........+- ....|..++.++.-.|+...|..+++...+ |+...|.-. .......|.+++|++.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5555544432 334566666666666666666666555432 333322211 12334455555555555
Q ss_pred HHHHHCCCCCCHHHH-HHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHHhhcc----
Q 012234 163 REMQASGVRPNAVTI-SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ-RVFDRFK---- 236 (468)
Q Consensus 163 ~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~---- 236 (468)
..-... ..|...+ ..-...+.+.+++++|..++..++..+ +.+...|..+..++.+..+.-++. .+|....
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 443221 1111111 223344555666666666666665543 222222223333333222222222 3333322
Q ss_pred ------------------------------CCC-cchHHHHHHHHHHcCChHHHHHHHHHHHH----CC----------C
Q 012234 237 ------------------------------GRS-LIIWTAIISAYAAHGDASKAVSLFNEMLN----NG----------I 271 (468)
Q Consensus 237 ------------------------------~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~----------~ 271 (468)
+.+ +.++..+.+.|-.-...+-..++...+.. .| -
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 112 23344444444322222211112111111 11 1
Q ss_pred CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHH
Q 012234 272 QPDP--VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVW 346 (468)
Q Consensus 272 ~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~ 346 (468)
+|.. .++..++..+-..|+++.|+.+++.... -.|+ +..|..-.+.+...|.+++|..++++.. ..||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 4444 4556678888899999999999999884 3565 4556666788999999999999999884 45555544
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCC---C---cc-hHHHH--HHHHHHcCChHHHHHHHHHH
Q 012234 347 GALLYGASISGDVELGKFVCDHLFEIEPE---N---TG-NYIIM--ANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~---~~-~~~~l--~~~~~~~g~~~~A~~~~~~m 403 (468)
..-+.-..+.++.++|.+++...-+.+.+ + .. +|..+ +.+|.+.|++-.|++=+...
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 45566667889999999998877665421 1 11 22222 56788888887777644333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.5e-08 Score=90.42 Aligned_cols=281 Identities=13% Similarity=0.094 Sum_probs=150.0
Q ss_pred HHhcCCHHHHHHHHhhCCC--CCH-hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-c-----cC
Q 012234 118 YMVHGFVEKAMDLFQVMKR--PGL-STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS-H-----FS 188 (468)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~-----~~ 188 (468)
+...|++++|++.++.-.. .|. .........+.+.|+.++|..++..+++.+ |+...|...+..+. - ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccc
Confidence 3455555555555554333 332 234445556666666666666666666653 34443333332222 1 12
Q ss_pred ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH-HHHHHHhhccCCCc-chHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH-GAQRVFDRFKGRSL-IIWTAIISAYAAHGDASKAVSLFNEM 266 (468)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m 266 (468)
+.+....+|+.+...- |.......+.-.+.....+. .+..++.....+++ .+|+.+-..|....+..-...++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 3455555665554433 21111111111111111121 22333333444444 34444444555444444444444444
Q ss_pred HHC----C----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHH
Q 012234 267 LNN----G----------IQPDP--VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISE 329 (468)
Q Consensus 267 ~~~----~----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 329 (468)
... + -+|.. +++..+.+.|...|++++|+.++++.+.. .|+ +..|..-.+.|-+.|++.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHH
Confidence 321 1 12333 34455667777788888888888877743 454 5667777778888888888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-Ccc------h--HHHHHHHHHHcCChHHHHH
Q 012234 330 ATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE-NTG------N--YIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 330 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~------~--~~~l~~~~~~~g~~~~A~~ 398 (468)
|.+.++... ..-|..+-+..+..+.+.|++++|++++...-+.+.+ ... + ....+.+|.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888887764 2335555556667777888888888887766554421 110 1 2345677888888888877
Q ss_pred HHHHHHh
Q 012234 399 VREQMKE 405 (468)
Q Consensus 399 ~~~~m~~ 405 (468)
.|....+
T Consensus 327 ~~~~v~k 333 (517)
T PF12569_consen 327 RFHAVLK 333 (517)
T ss_pred HHHHHHH
Confidence 6655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-07 Score=84.96 Aligned_cols=374 Identities=13% Similarity=0.072 Sum_probs=248.1
Q ss_pred HHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 012234 14 AGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93 (468)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 93 (468)
.+....|+++.|+.+|-+.. ... |+|..-|..=..+++..|+++.|++=-.+.++..+. -..-|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai-~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAI-MLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHH-ccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 34567899999999999988 443 567778888888999999999999877777776533 355788888999999999
Q ss_pred HHHHHHHhhcCCCC---eehHHHHHHHHHhcCCHHHHHHHHh------hCCC-CC------HhHHHHHHHHHHhC-----
Q 012234 94 DYARALLDEMSDKD---EVSYSAIISGYMVHGFVEKAMDLFQ------VMKR-PG------LSTWNAVISGLVQN----- 152 (468)
Q Consensus 94 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~------~~~~-~~------~~~~~~l~~~~~~~----- 152 (468)
++|+..|.+-.+.+ ...++-+..++... .++.+.|. .... |. ...|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999887643 34555565555111 00111111 0000 00 01233333222111
Q ss_pred -----CChHHHHHHHHHH-----HHCC-------CCC----------------------CHHHHHHHHHHHHccCChhhH
Q 012234 153 -----NRHEAVLDLVREM-----QASG-------VRP----------------------NAVTISSIFSLFSHFSNLKGG 193 (468)
Q Consensus 153 -----g~~~~a~~~~~~m-----~~~~-------~~p----------------------~~~~~~~l~~~~~~~~~~~~a 193 (468)
.+...+...+... ...| ..| -..-...+.++..+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 1111111111110 0000 111 123467788888889999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc----------chHHHHHHHHHHcCChHHHHHHH
Q 012234 194 KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL----------IIWTAIISAYAAHGDASKAVSLF 263 (468)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~a~~~~ 263 (468)
.+-+....... .+..-++....+|...|.+..+...-....+.+. ..+..+..+|.+.++++.++..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 99999988876 5666677788889998888887776666554322 12333445677778899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHh-HHHHHHHHHhccCChHHHHHHHHhCC--CC
Q 012234 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVE-HYACMVGVLSRARRISEATEFVSKMP--VK 340 (468)
Q Consensus 264 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~--~~ 340 (468)
.+.......|+.. .+....+++....+... -+.|... -...-...+.+.|++..|+..|.++. .+
T Consensus 322 ~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 8876654444422 22334445544444333 3344431 12223666788899999999998872 34
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.|...|..-.-+|.+.|.+..|..-.+...+++|+....|..=+.++....+|++|.+.|++..+..
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678888889999999999999999999999999999999999999999999999999998877654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.09 E-value=7e-07 Score=82.56 Aligned_cols=257 Identities=9% Similarity=-0.024 Sum_probs=145.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCc-hhHHHHHHHHHHh
Q 012234 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH----FSNLKGGKEIHGYAVKNRYDRN-IYVATAIIDTYAK 221 (468)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 221 (468)
..+...|++++|.+.+++..+.. +.+...+.. ...+.. .+....+.+.+.. .....|+ ......+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 34566777777777777776652 223323321 112222 3333444443333 1111222 2333445566777
Q ss_pred cCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHH
Q 012234 222 TGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGI-QPDP--VTFTAVLSACAHSGLVDKAW 295 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~ 295 (468)
.|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888877664 2345667777788888888888888887766421 1222 23456777788888888888
Q ss_pred HHHHHhhhhcCCCCCHhHH-H--HHHHHHhccCChHHHHHH---HHhC----CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012234 296 DIFNAMSGQYGIQPSVEHY-A--CMVGVLSRARRISEATEF---VSKM----PVKPSAKVWGALLYGASISGDVELGKFV 365 (468)
Q Consensus 296 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~~~~~~A~~~---~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 365 (468)
.++++........+..... + .++.-+...|....+..+ .... ..............++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 8888875321111111111 1 222333333432222222 1111 1111122223556677788899999998
Q ss_pred HHHHHhhCCC---------CcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 366 CDHLFEIEPE---------NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 366 ~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++.+...... ........+.++.+.|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8887664211 23345566778889999999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-08 Score=78.21 Aligned_cols=193 Identities=11% Similarity=0.109 Sum_probs=151.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (468)
...|.-.|...|+...|..-+++..+.|+ .+|..+...|.+.|..+.|.+.|++..... +-+....|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 34466778888888888888888877544 577888888889999999999999888752 23456777778888888
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
|.+++|.+.|++........--..+|..+.-+..+.|+++.|.+.|++. ...| .+.+...+.......|++..|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 9999999999988876333334568888888888899999999999877 3344 4667777888888899999999999
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++.....+.+...+...++.-.+.|+-+.|-++=..+.+
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 988888777888888888888888998888776555544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.1e-06 Score=77.09 Aligned_cols=389 Identities=13% Similarity=0.125 Sum_probs=251.1
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhC------CCCchHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESH------IKMDLWIC 80 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~ 80 (468)
..|...+......|-++-++.+|++.+ + .++..-+-.+..++..+++++|.+.+...+... .+.+...|
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYL-k----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYL-K----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHH-h----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 457777777788888999999999998 4 333446777888899999999999998876432 24456677
Q ss_pred HHHHHHHHhCCCH---HHHHHHHhhcCCC--C--eehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHh
Q 012234 81 NALIGMYAKCGSL---DYARALLDEMSDK--D--EVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQ 151 (468)
Q Consensus 81 ~~l~~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~ 151 (468)
+-+-+...++-+. -....+++.+... | ...|.+|.+-|.+.|.+++|.++|++..+ -.+.-|+.+..+|+.
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 7776666655432 2344455655543 3 45799999999999999999999998765 222233333333322
Q ss_pred ----------------CCC------hHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHccCChhhHHHHHH
Q 012234 152 ----------------NNR------HEAVLDLVREMQASGV-----------RPNAVTISSIFSLFSHFSNLKGGKEIHG 198 (468)
Q Consensus 152 ----------------~g~------~~~a~~~~~~m~~~~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 198 (468)
.|+ ++-.+..|+.+...+. +.+..++..-+ -...|+..+....|.
T Consensus 294 FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyt 371 (835)
T KOG2047|consen 294 FEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYT 371 (835)
T ss_pred HHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHH
Confidence 111 2223334444433210 11112222111 123456677777787
Q ss_pred HHHHcCCCC------chhHHHHHHHHHHhcCChHHHHHHHhhccCCCc-------chHHHHHHHHHHcCChHHHHHHHHH
Q 012234 199 YAVKNRYDR------NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL-------IIWTAIISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 199 ~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (468)
++++.- .| -...+..+...|-..|+++.|..+|++..+-+. .+|......-.++.+++.|+++.+.
T Consensus 372 eAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 372 EAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred HHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 777631 22 224677889999999999999999999887443 3566666666778899999999887
Q ss_pred HHHCCCC-----------C------CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChH
Q 012234 266 MLNNGIQ-----------P------DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328 (468)
Q Consensus 266 m~~~~~~-----------p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 328 (468)
.....-. + +...|...++.--..|-++....+++++... .+. ++.........+....-++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-ria-TPqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RIA-TPQIIINYAMFLEEHKYFE 528 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHhhHHHH
Confidence 7542111 1 1223444555555667888888899888854 221 2223223333445666789
Q ss_pred HHHHHHHhCC---CCCC-HHHHHHHHHHHHH---cCChHHHHHHHHHHHhhCCCCcc--hHHHHHHHHHHcCChHHHHHH
Q 012234 329 EATEFVSKMP---VKPS-AKVWGALLYGASI---SGDVELGKFVCDHLFEIEPENTG--NYIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 329 ~A~~~~~~~~---~~~~-~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 399 (468)
++.++|++-. ..|+ ...|+..+.-+.+ ....+.|..+|+++++..|+... .|...+..--+.|....|+.+
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999998763 3444 4578877765543 33789999999999998776332 344445555567888888888
Q ss_pred HHHHHh
Q 012234 400 REQMKE 405 (468)
Q Consensus 400 ~~~m~~ 405 (468)
+++.-.
T Consensus 609 yerat~ 614 (835)
T KOG2047|consen 609 YERATS 614 (835)
T ss_pred HHHHHh
Confidence 888643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.8e-09 Score=90.65 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=39.4
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCCh-HHHHHHHHH
Q 012234 326 RISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW-DEADRVREQ 402 (468)
Q Consensus 326 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 402 (468)
.+.+|..+|+++. ..+++.+.+.+..++...|++++|++++.++.+.+|.++.+...++-+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3455555555542 2344455555555555555555555555555555555555555555555555555 344455555
Q ss_pred HHh
Q 012234 403 MKE 405 (468)
Q Consensus 403 m~~ 405 (468)
++.
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-08 Score=86.92 Aligned_cols=250 Identities=14% Similarity=0.124 Sum_probs=160.4
Q ss_pred HHHhcCCHHHHHHHHhhCCC-C--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 012234 117 GYMVHGFVEKAMDLFQVMKR-P--GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGG 193 (468)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 193 (468)
-+.-.|++..++.-.+.-.. + +......+.+++...|+++.++. ++.... .|.......+...+...++-+.+
T Consensus 10 n~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 34456666666654441111 1 22345556778888888776543 333332 56666655555555444444555
Q ss_pred HHHHHHHHHcCCC-CchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012234 194 KEIHGYAVKNRYD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272 (468)
Q Consensus 194 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 272 (468)
..-++........ .+..+......++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444443333322 23333333445667789999999888875 55666777889999999999999999999864 3
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHH
Q 012234 273 PDPVTFTAVLSACAH----SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVW 346 (468)
Q Consensus 273 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~ 346 (468)
.|. +...+..++.. .+.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ...| ++.+.
T Consensus 162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 343 33444444432 3468999999999875 45678888999999999999999999999886 3334 56777
Q ss_pred HHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCc
Q 012234 347 GALLYGASISGDV-ELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 347 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 377 (468)
..++......|+. +.+.+.+.++....|.++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 7888888888888 778889999888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.9e-07 Score=75.72 Aligned_cols=317 Identities=11% Similarity=0.044 Sum_probs=190.9
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHH---HH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI---IS 116 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~ 116 (468)
.++.-..-+.+.+...|.+..|+.-|...++.++. +-.++-.-...|...|+-..|+.=|.++.+..+..+.+- ..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 34555667778888889999999999888775433 223344456788889998888888888876544444433 35
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 012234 117 GYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEI 196 (468)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 196 (468)
.+.+.|.+++|..-|+.+.+.++.. +....++.+.-..++-. .....+..+...|+...|...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHH
Confidence 6789999999999999987622210 00001111100000000 111222233344444555555
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhc---cCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 012234 197 HGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF---KGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP 273 (468)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 273 (468)
...+++.. +.+...+..-..+|...|.+..|+.-++.. .+.+...+.-+-..+...|+.+.++...++..+ +.|
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldp 254 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDP 254 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCc
Confidence 44444432 344445555555555555555555444332 223444444555555566666666665555544 244
Q ss_pred CHHH----HHHH---------HHHHhccCCHHHHHHHHHHhhhhcCCCCC-----HhHHHHHHHHHhccCChHHHHHHHH
Q 012234 274 DPVT----FTAV---------LSACAHSGLVDKAWDIFNAMSGQYGIQPS-----VEHYACMVGVLSRARRISEATEFVS 335 (468)
Q Consensus 274 ~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~ 335 (468)
|... |..+ +......+++.+++...+...+. .|. ...+..+..++...+++.+|+....
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 4321 1111 12234456777777777777753 444 2234556677778889999998888
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 336 KM-PVKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 336 ~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
++ .+.|+ ..++.--..+|.-..+++.|+.-|+++.+.+++|..+-
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 77 35554 77888888889999999999999999999998876543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-08 Score=92.89 Aligned_cols=220 Identities=13% Similarity=0.082 Sum_probs=167.2
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHH
Q 012234 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAV 260 (468)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 260 (468)
+.+.|++..|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+- |..+...|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356777888888888888776 556777887887888888888888888777663 3456666666788888888888
Q ss_pred HHHHHHHHCCCCC--------CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHH
Q 012234 261 SLFNEMLNNGIQP--------DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332 (468)
Q Consensus 261 ~~~~~m~~~~~~p--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 332 (468)
..++.-+....+- +...-.. ..+.....+....++|-.+....+..+|+.+...|.-.|.-.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 8887765432110 0000000 12222333455666666666555656788899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 333 FVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 333 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.|+.+ ..+| |..+||.|...++...+.++|+..|.+++++.|.-.++...|+-.|...|.+++|.+.|=..+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99987 4566 67899999999999999999999999999999999999999999999999999999988766553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-06 Score=79.13 Aligned_cols=366 Identities=14% Similarity=0.103 Sum_probs=235.7
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhc-cCChHHHHHHHHHHHHhC----CCCchHHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ-SSDIVFGMEVHNFVIESH----IKMDLWICN 81 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~----~~~~~~~~~ 81 (468)
..|+.+...+...|.-..|+.+++.-.....-+++...+...-+.|.+ .+..++++++-.+++... -......|.
T Consensus 358 e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l 437 (799)
T KOG4162|consen 358 ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYL 437 (799)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 458888888999999999999999876333223344455555556654 477788877777776621 122344555
Q ss_pred HHHHHHHhCC-----------CHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC----CCHhHHH
Q 012234 82 ALIGMYAKCG-----------SLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR----PGLSTWN 143 (468)
Q Consensus 82 ~l~~~~~~~g-----------~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~ 143 (468)
.+.-+|...- ...++++.+++..+. |+.....+.--|+..++++.|.+..++..+ .+...|.
T Consensus 438 ~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~wh 517 (799)
T KOG4162|consen 438 FLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWH 517 (799)
T ss_pred HHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHH
Confidence 5555554321 244677778877543 454444555567788999999988887654 5677899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHH--------------------
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYAVK-------------------- 202 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------- 202 (468)
.|.-.+...+++.+|+.+.+..... .|+ ......-+..-...++.+++......+..
T Consensus 518 LLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~l 595 (799)
T KOG4162|consen 518 LLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRL 595 (799)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhh
Confidence 9999999999999999999887654 121 11111111111223444444333222221
Q ss_pred -cCC-------CCchhHHHHHHHHHHh---cCChHHHHHHHhhccCCCc------chHHHHHHHHHHcCChHHHHHHHHH
Q 012234 203 -NRY-------DRNIYVATAIIDTYAK---TGFLHGAQRVFDRFKGRSL------IIWTAIISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 203 -~~~-------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (468)
.|. ...+.++..+...... .-..+..+..+.....++. ..|......+...++.++|...+.+
T Consensus 596 k~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 596 KAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred hcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 010 0111222222211111 0111111111111111221 2466667788899999999988888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHH--HHHhC-CCCC
Q 012234 266 MLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATE--FVSKM-PVKP 341 (468)
Q Consensus 266 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~--~~~~~-~~~~ 341 (468)
.... .+.....|......+...|..++|.+.|.... .+.| ++....++...+.+.|+..-|.+ ++..+ ++.|
T Consensus 676 a~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 676 ASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 7664 34456677777778888999999999999887 4566 46778899999999998887777 88777 4555
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 012234 342 -SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 342 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (468)
+...|..+...+...|+.+.|-+.|..+.++.+.+|.
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 6899999999999999999999999999999766654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-07 Score=85.10 Aligned_cols=168 Identities=14% Similarity=0.127 Sum_probs=77.3
Q ss_pred HHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVS 261 (468)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 261 (468)
.+......+.+|..+++.+...+. ....|..+...|...|+++.|.++|-+.. .++-.|..|.+.|+|+.|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 333444555555555555444321 12233444555555555555555554332 23444555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCC
Q 012234 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKP 341 (468)
Q Consensus 262 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 341 (468)
+-.+.. |.......|..-..-+-+.|++.+|++++-.+. .|+. -|.+|-+.|..++.+++..+--...
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhh
Confidence 543322 222223334333444445555555555543322 2332 2344555555555555554441111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
-..|...+..-+-..|+.+.|++.|-+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 123444445555555555555555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-07 Score=75.97 Aligned_cols=302 Identities=14% Similarity=0.122 Sum_probs=173.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHH-HHHHHHhCC
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNA-VISGLVQNN 153 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~g 153 (468)
+.+.+..+.+..+++.|++++..-.++ +....+.|..+|....++..|-..++++.. |...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 455666667778888888888766654 344567777788888888888888888765 44444432 235566778
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 012234 154 RHEAVLDLVREMQASGVRPNAVTISSIFS--LFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231 (468)
Q Consensus 154 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 231 (468)
.+..|+++...|... |+-..-..-+. ...+.+++..++.+.++.-.. .+..+.+.......+.|+++.|..-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 888888888777643 22222111222 233556677776666655432 2333444445555667777777777
Q ss_pred HhhccCC----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHhccCCHHHHHHHHHHhh
Q 012234 232 FDRFKGR----SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA-----VLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 232 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
|+...+- ....|+..+ ++.+.|+++.|+++..+++++|++..+. ++. .+++ ...|+. ..+....
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgNt---~~lh~Sa- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGNT---LVLHQSA- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccch---HHHHHHH-
Confidence 7766552 223444433 3445567777777777777776542111 100 0000 000000 0000000
Q ss_pred hhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 012234 303 GQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP----VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 303 ~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (468)
-...+|.-...+.+.|+++.|.+.+-.|+ ...|+.|...+.-.- ..+++....+-+.-+++.+|-.+.
T Consensus 240 -------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 240 -------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred -------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChH
Confidence 01223333344567788888888888884 334666665543221 234555666666666777777777
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHH
Q 012234 379 NYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
+|..+.-.|++..-++-|..++-+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 888888888888877777776543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-06 Score=72.19 Aligned_cols=348 Identities=10% Similarity=0.065 Sum_probs=190.7
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCHH
Q 012234 49 LQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFVE 125 (468)
Q Consensus 49 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 125 (468)
+.-+...+|+..|..+++.-...+-+....+---+..++.+.|++++|...+.-+.+ ++...+..|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 445566789999999998776554333333444567788899999999999998765 45667778888888889999
Q ss_pred HHHHHHhhCCCCCHhHHHHHHHHHHhCCC------------------------------hHHHHHHHHHHHHCCCCCCHH
Q 012234 126 KAMDLFQVMKRPGLSTWNAVISGLVQNNR------------------------------HEAVLDLVREMQASGVRPNAV 175 (468)
Q Consensus 126 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~------------------------------~~~a~~~~~~m~~~~~~p~~~ 175 (468)
+|..+-.+..+ ++-.-..|+....+.++ +.+|++++...+.. .|+-.
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~ 185 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI 185 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence 99998887754 11112222233333333 45555555555443 23333
Q ss_pred HHHHH-HHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CChHH--HHHHHhhccC----------CCc
Q 012234 176 TISSI-FSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT--GFLHG--AQRVFDRFKG----------RSL 240 (468)
Q Consensus 176 ~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~--a~~~~~~~~~----------~~~ 240 (468)
..+.- .-+|.+..-++-+.+++.-..+.- +.++...|.......+. |+..+ -.++-+...+ .|.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 33322 233444444555555554444331 22222222222222221 22111 1122222211 011
Q ss_pred ---------------------chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hccCCHHHH
Q 012234 241 ---------------------IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-----AHSGLVDKA 294 (468)
Q Consensus 241 ---------------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a 294 (468)
.+.-.++--|.+++++.+|..+.+++.- ..|-......++.+- .......-|
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 1122334445666777777766655321 122222222222211 111224455
Q ss_pred HHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 295 WDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371 (468)
Q Consensus 295 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 371 (468)
.+.|.-.-+. +..-| ...-.++...+.-..++++++.+++.++ ...|...-..+..+.+..|++.+|+++|-++..
T Consensus 343 qqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 343 QQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence 5555544332 33322 2223344455555566777777777664 223333334577888899999999999988777
Q ss_pred hCCCCcchH-HHHHHHHHHcCChHHHHHHHHHH
Q 012234 372 IEPENTGNY-IIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 372 ~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
.+..|..+| ..|+++|.+.|+.+-|+.++-++
T Consensus 422 ~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 422 PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 664455555 46789999999999998876544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.4e-06 Score=86.81 Aligned_cols=324 Identities=13% Similarity=0.064 Sum_probs=211.4
Q ss_pred HHHHhCCCHHHHHHHHhhcCC----CCeehHHHHHHHHHhcCCHHHHHHHHhhCCC----C----C--H--hHHHHHHHH
Q 012234 85 GMYAKCGSLDYARALLDEMSD----KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----P----G--L--STWNAVISG 148 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~----~--~--~~~~~l~~~ 148 (468)
......|+++.+...++.+.. .++.........+...|++++|...+..... . + . .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344556777777777777632 2343344455556778999998888876532 1 1 1 122233455
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhhHHHHHHHHHHcCCC---C--chhHHHHHHHHH
Q 012234 149 LVQNNRHEAVLDLVREMQASGVRPNA----VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD---R--NIYVATAIIDTY 219 (468)
Q Consensus 149 ~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~ 219 (468)
+...|++++|...+++....-...+. ...+.+...+...|+++.|...+......... + .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999998763111121 23445566678899999999999887753211 1 123445667778
Q ss_pred HhcCChHHHHHHHhhccC-------CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH
Q 012234 220 AKTGFLHGAQRVFDRFKG-------RS----LIIWTAIISAYAAHGDASKAVSLFNEMLNN--GIQPD--PVTFTAVLSA 284 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~l~~~ 284 (468)
...|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999998876543 11 122444556677789999999999887552 11122 3344456667
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHH-----HHHHHHHhccCChHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHY-----ACMVGVLSRARRISEATEFVSKMPVK--PSA----KVWGALLYGA 353 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~ 353 (468)
+...|+.+.|...++..............+ ...+..+...|+.+.|..++...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999999988875421111111111 11224445689999999998776411 111 1234567778
Q ss_pred HHcCChHHHHHHHHHHHhhCC------CCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 354 SISGDVELGKFVCDHLFEIEP------ENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
...|+.++|...++++..... ....++..++.++.+.|+.++|...+.+..+..-
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 899999999999999887521 1234677888999999999999999999987553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-05 Score=76.14 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=86.0
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC-CCeehHHHHHHHHHhcCCHHHHHHHH
Q 012234 53 GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-KDEVSYSAIISGYMVHGFVEKAMDLF 131 (468)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~ 131 (468)
...|.+++|..+|.+..+.+ .|=..|...|.+++|.++-+.-.. .=..||.....-+-..++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 34455555555555544321 222334455566666555443221 11234555555555556666666666
Q ss_pred hhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhH
Q 012234 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211 (468)
Q Consensus 132 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 211 (468)
++...+--..+..|. ..+.....+.+. ..|...|.....-+...|+.+.|..+|..+..
T Consensus 882 EK~~~hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred HhcCChHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 554322111111110 011111111111 12334455555555666666666666665553
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 266 (468)
|-++++..|-.|+.++|-++-++- .|..+...+...|-..|++.+|...|.+.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 223455555566666665554432 23344445556666666666666666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-06 Score=76.72 Aligned_cols=195 Identities=10% Similarity=0.015 Sum_probs=108.9
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcch-HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH---
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVT-VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA--- 82 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 82 (468)
..|..+...+...|+.+.+.+.+....+.....++... .......+...|+++.|.+.+++..+..+. +...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHH
Confidence 44666677777778888877777776533221222211 112223456678899999999988887543 4434332
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCee---hHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChH
Q 012234 83 LIGMYAKCGSLDYARALLDEMSDKDEV---SYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHE 156 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 156 (468)
........+..+.+.+.+......++. ....+...+...|++++|...+++..+ .+...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 111122245555555555542222222 223344556667777777777776654 23445666666777777777
Q ss_pred HHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHccCChhhHHHHHHHHHH
Q 012234 157 AVLDLVREMQASGV-RPNA--VTISSIFSLFSHFSNLKGGKEIHGYAVK 202 (468)
Q Consensus 157 ~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 202 (468)
+|...+++...... .|+. ..+..+...+...|++++|..+++.+..
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777776655421 1222 1233455566666677777666666543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.2e-06 Score=79.18 Aligned_cols=209 Identities=14% Similarity=0.195 Sum_probs=151.1
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC--CCchhHHHHH---------------------------HHHHHhcC
Q 012234 173 NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY--DRNIYVATAI---------------------------IDTYAKTG 223 (468)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l---------------------------~~~~~~~g 223 (468)
|+...+..++++...+-..+-.+++++++-.+. ..+....+.| .......+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 555666777888888888888888877764321 1112222222 22333445
Q ss_pred ChHHHHHHHhhccC-------------------------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012234 224 FLHGAQRVFDRFKG-------------------------RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278 (468)
Q Consensus 224 ~~~~a~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 278 (468)
-+++|..+|++..- ..+..|..+..+-.+.|...+|++-|-+. -|+..|
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 56777777775432 13467999999999999999999877542 367789
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 358 (468)
..+++...+.|.+++-.+++.-.+++ .-+|.. -+.|+-+|++.++..+.++++. .|+......+.+-|...|.
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhh
Confidence 99999999999999999998877765 445544 4578999999999988877764 5777777888899999999
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
++.|.-+|. +.+.|..|+..+...|++..|..--++
T Consensus 1210 y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1210 YEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999988886 345677788888888887777654443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-06 Score=79.78 Aligned_cols=168 Identities=15% Similarity=0.140 Sum_probs=121.1
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS 92 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 92 (468)
|.+-.....|.+|+.+++.++ ... .-+..|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+
T Consensus 739 ieaai~akew~kai~ildniq-dqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQ-DQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhh-hhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 344456778899999999887 432 34556778888899999999999988543 235678899999999
Q ss_pred HHHHHHHHhhcCCCC--eehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 012234 93 LDYARALLDEMSDKD--EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV 170 (468)
Q Consensus 93 ~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 170 (468)
++.|.++-++...|. ...|.+-..-+-+.|++.+|.+++-.+..|+.. |..|-+.|..+..+++..+-...
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChh--
Confidence 999999999887763 445666667778899999999999888887653 66788888888888877654221
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHH
Q 012234 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200 (468)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 200 (468)
.-..|...+..-+...|++..|...|-+.
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 11234445555666666666666555433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-06 Score=82.71 Aligned_cols=335 Identities=12% Similarity=0.100 Sum_probs=212.7
Q ss_pred CcchHHHHHHH--hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC-----------CC
Q 012234 41 DGVTVVSVLQA--CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-----------KD 107 (468)
Q Consensus 41 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~ 107 (468)
|..|-..++.. |...|+.+.|.+-.+.+. +..+|..+.++|.+..++|-|.-.+-.|.. .+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 45555555543 566788888877665543 456788899999999888888877777753 12
Q ss_pred e-ehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 108 E-VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 108 ~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
. ..-..........|.+++|..+|++..+ |..|=..|...|.+++|+++-+.=-+-. =..||..-..-+..
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEA 870 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHh
Confidence 2 3333333445677889999999988765 5555567778899999988765432211 22355555666666
Q ss_pred cCChhhHHHHHHHHHHc----------C---------CCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKN----------R---------YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 247 (468)
.++.+.|.+.|++.... . -..+...|......+...|+.+.|+.+|..... |..++
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~V 945 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMV 945 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhhe
Confidence 77777777766643211 1 122344555555566677888888888876554 67777
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc-CCC--CCHhHHHHHHHHHhc-
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY-GIQ--PSVEHYACMVGVLSR- 323 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--p~~~~~~~l~~~~~~- 323 (468)
...|-+|+.++|..+-++- -|......+.+.|...|++.+|..+|.+...-. .+. .....-..|...+..
T Consensus 946 rI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred eeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 7788889999988877652 255556668889999999999999988765210 000 000011122222222
Q ss_pred -cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----------HhhCCC-CcchHHHHHHHHHHcC
Q 012234 324 -ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHL----------FEIEPE-NTGNYIIMANLYSQAG 391 (468)
Q Consensus 324 -~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------~~~~~~-~~~~~~~l~~~~~~~g 391 (468)
..+.-.|-.+|++.+.. +...+..|.+.|.+.+|.++.-+- ..++|. ||.....-++.+....
T Consensus 1020 ~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred CchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 23444556677766422 233445677888888887654322 122443 6777888888888999
Q ss_pred ChHHHHHHHHHHHh
Q 012234 392 RWDEADRVREQMKE 405 (468)
Q Consensus 392 ~~~~A~~~~~~m~~ 405 (468)
++++|..++...++
T Consensus 1095 qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888765544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-05 Score=75.18 Aligned_cols=293 Identities=13% Similarity=0.131 Sum_probs=158.7
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcch-----HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVT-----VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWI 79 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (468)
|+..-..-+.++...+-+.+-+++++++. - .|++++ -+.++-...+ -+..++.+..+++-.-+. |+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIv-L---~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~--- 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIV-L---DNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD--- 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHh-c---CCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh---
Confidence 34444555677777777777788887776 2 233332 2222222222 233444444444432221 11
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC-------------------------CCeehHHHHHHHHHhcCCHHHHHHHHhhC
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSD-------------------------KDEVSYSAIISGYMVHGFVEKAMDLFQVM 134 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 134 (468)
+...+...+-+++|..+|+...- ..+..|+.+..+-.+.|.+.+|++-|-+.
T Consensus 1054 ---ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1054 ---IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred ---HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 12222333344444444443321 13345666666666666666666665543
Q ss_pred CCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHH
Q 012234 135 KRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATA 214 (468)
Q Consensus 135 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 214 (468)
.|+..|..++....+.|.+++-.+++...++..-.|... +.++-+|++.+++.+.++++. .|+..-...
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQ 1199 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHH
Confidence 344556666666666666666666665555554444433 245556666666655554432 355555555
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 294 (468)
+.+-+...|.++.|.-+|. ++..|..+...+...|++..|...-++. .+..||..+-.+|...+.+.-|
T Consensus 1200 vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH
Confidence 5566666666666665554 3345777778888888888877665543 2456676666666665544322
Q ss_pred HHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 295 WDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
++..- ++.....-..-|+..|...|-+++.+.+++..
T Consensus 1269 -----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1269 -----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred -----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 22211 22234444556677777777777777776654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-07 Score=75.24 Aligned_cols=148 Identities=9% Similarity=0.094 Sum_probs=112.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC
Q 012234 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326 (468)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 326 (468)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3467777777776444332221 11 0122356677777777777753 35578889999999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHH
Q 012234 327 ISEATEFVSKM-PVKP-SAKVWGALLYGA-SISGD--VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401 (468)
Q Consensus 327 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 401 (468)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++.+.+|.++.++..++..+...|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 3444 677888888764 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 012234 402 QMKESGL 408 (468)
Q Consensus 402 ~m~~~~~ 408 (468)
++.+..-
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.8e-07 Score=82.68 Aligned_cols=248 Identities=14% Similarity=0.109 Sum_probs=180.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 012234 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226 (468)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 226 (468)
.-+.+.|+..+|.-.|+..+..+ +-+...|..|.......++-..|+..+.+..+.. +.+..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567888888888888887764 4456678888888888888888888888888775 456667777888888888888
Q ss_pred HHHHHHhhccCCCcc-hHHHHH---------HHHHHcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 012234 227 GAQRVFDRFKGRSLI-IWTAII---------SAYAAHGDASKAVSLFNEML-NNGIQPDPVTFTAVLSACAHSGLVDKAW 295 (468)
Q Consensus 227 ~a~~~~~~~~~~~~~-~~~~l~---------~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 295 (468)
.|.+.|+......+. .|.... +.+..........++|-++. ..+..+|......|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 898888876432110 000000 11111222344555555554 4554577777777887888899999999
Q ss_pred HHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 012234 296 DIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGASISGDVELGKFVCDHLFEI 372 (468)
Q Consensus 296 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 372 (468)
..|+.+. .++| |...||.|...++...+.++|+..|++. ..+|. +.+...|.-.|...|.+++|...|-.++.+
T Consensus 451 Dcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999998 4466 6789999999999999999999999988 47776 567888999999999999999999888876
Q ss_pred CCC----------CcchHHHHHHHHHHcCChHHHHHH
Q 012234 373 EPE----------NTGNYIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 373 ~~~----------~~~~~~~l~~~~~~~g~~~~A~~~ 399 (468)
.+. +..+|..|=.++.-.++.|-+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 432 123666666677777777655543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.5e-06 Score=86.75 Aligned_cols=323 Identities=9% Similarity=-0.044 Sum_probs=205.4
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC----CC---e-----ehHHHHHHHHH
Q 012234 52 CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD----KD---E-----VSYSAIISGYM 119 (468)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~---~-----~~~~~li~~~~ 119 (468)
....|++..+..+++.+.......+..........+...|++++|...+..... .+ . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 345577776666665542111112222334455566788999999888876532 11 1 11122334556
Q ss_pred hcCCHHHHHHHHhhCCC----CCH----hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHc
Q 012234 120 VHGFVEKAMDLFQVMKR----PGL----STWNAVISGLVQNNRHEAVLDLVREMQASGV---RP--NAVTISSIFSLFSH 186 (468)
Q Consensus 120 ~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~ 186 (468)
..|++++|...++.... .+. ...+.+...+...|++++|...+++.....- .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 88999999998887543 221 2456666778889999999999988864311 11 12344556677888
Q ss_pred cCChhhHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCChHHHHHHHhhccC------C--CcchHHHHHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKN----RYD--R-NIYVATAIIDTYAKTGFLHGAQRVFDRFKG------R--SLIIWTAIISAYA 251 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~ 251 (468)
.|+++.|...+.+.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998877653 211 1 123344556677788999999988887643 1 1234445666788
Q ss_pred HcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC---HhHHHHHHHHHh
Q 012234 252 AHGDASKAVSLFNEMLNNG--IQPDPV--TF--TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS---VEHYACMVGVLS 322 (468)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~--~~p~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 322 (468)
..|+++.|...+.+..... ...... .. ...+..+...|+.+.|...+...... ..... ...+..+..++.
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHH
Confidence 8999999999998875421 111110 10 11223445578999999998776532 11111 111345667788
Q ss_pred ccCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 323 RARRISEATEFVSKMP-------VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
..|+.++|...+++.. ..+ ...+...+..++...|+.++|...+.++.+...+
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 9999999999988762 111 1345666777889999999999999999998643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.1e-07 Score=77.54 Aligned_cols=182 Identities=12% Similarity=0.043 Sum_probs=121.1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC-HHHH
Q 012234 207 RNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL------IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PD-PVTF 278 (468)
Q Consensus 207 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~~~ 278 (468)
.....+..+...+...|++++|...|+++...++ .++..+..++...|++++|...++++.+.... |. ..++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3445666677778888888888888887765222 35566777888888888888888888764221 11 1234
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhhhhcCCCCCH-hHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHH
Q 012234 279 TAVLSACAHS--------GLVDKAWDIFNAMSGQYGIQPSV-EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGAL 349 (468)
Q Consensus 279 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l 349 (468)
..+..++... |+.+.|.+.|+++... .|+. ..+..+..... ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 4444455443 6777888888887754 3432 22222211100 00000 0112245
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPEN---TGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
...+...|++.+|+..++++.+..|++ +..+..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667889999999999999999987764 468899999999999999999999888664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-06 Score=87.88 Aligned_cols=201 Identities=15% Similarity=0.178 Sum_probs=167.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccCC--------CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--------SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT 277 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 277 (468)
+.....|-..|......++.++|++++++.... -...|.+++..-...|.-+...++|+++.+. .-.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 334556777888888899999999999887652 2357888888777888888899999999874 212456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 012234 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP---SAKVWGALLYGA 353 (468)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~ 353 (468)
|..|...|.+.+.+++|.++++.|.++++ -....|...+..+.+.++-+.|..++.+. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999766 55678999999999999999999999876 2233 345556667777
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
.+.|+.+++..+|+..+...|.-...|..+++.-.++|+.+.++.+|++.+..++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999999998864
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.4e-06 Score=80.68 Aligned_cols=372 Identities=12% Similarity=0.033 Sum_probs=229.6
Q ss_pred ChhHHHHHHHHhhhCCCCCCC-cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 012234 21 FYEECKALFREMLNSPVLRPD-GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARAL 99 (468)
Q Consensus 21 ~~~~A~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 99 (468)
+...|+..|=+.. +. .|+ ...|..+...|+...+...|.+.|+...+.+.. +........+.|+...+++.|..+
T Consensus 473 ~~~~al~ali~al-rl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRAL-RL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHH-hc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 3666777776655 32 233 456888888888888889999999999887643 777788899999999999999998
Q ss_pred HhhcCCCC-----eehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 012234 100 LDEMSDKD-----EVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVR 171 (468)
Q Consensus 100 ~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 171 (468)
.-...+.+ ...|....-.|.+.++...|+.-|+...+ .|...|..++.+|...|++..|+++|.+.... .
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 55544432 22344555567788999999999988876 34557888899999999999999999888764 5
Q ss_pred CCHHHHHH--HHHHHHccCChhhHHHHHHHHHHcC------CCCchhHHHHHHHHHHhcCChHHHHHHHhhccC------
Q 012234 172 PNAVTISS--IFSLFSHFSNLKGGKEIHGYAVKNR------YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG------ 237 (468)
Q Consensus 172 p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------ 237 (468)
|+.. |.. ....-+..|.+.++...+..+.... ...-..++-.+...+.-.|-..+|..++++-.+
T Consensus 627 P~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PLSK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5542 322 2233467888888888888776532 111122222233333333433344444433221
Q ss_pred -----CCcchHHHHHHHHH---HcC--ChH-HHHHHH-HHHHHCCCCC--------------------CHHHHHHHHHHH
Q 012234 238 -----RSLIIWTAIISAYA---AHG--DAS-KAVSLF-NEMLNNGIQP--------------------DPVTFTAVLSAC 285 (468)
Q Consensus 238 -----~~~~~~~~l~~~~~---~~g--~~~-~a~~~~-~~m~~~~~~p--------------------~~~~~~~l~~~~ 285 (468)
.+...|..+..+|. +.. -+. ....++ .+....+.-| +..+|..++..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 12222332222211 110 000 000111 1111111111 122222222222
Q ss_pred hc-------c-CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 012234 286 AH-------S-GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASI 355 (468)
Q Consensus 286 ~~-------~-~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 355 (468)
.+ . .+...|...+++.++. ...+..+|+.|.-. ...|.+.-|...|-+.. .+....+|..+...+..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 21 1 1234566666666642 23345566665544 45566666666554442 33356788888888889
Q ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
..+++.|...|.+...+.|.|...|...+.+....|+.-++..+|..
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998888888888988888888765
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-05 Score=70.33 Aligned_cols=370 Identities=12% Similarity=0.065 Sum_probs=240.7
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCC-cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPD-GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICN 81 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (468)
+||.+.|..=..+|...|++++|++=-.+-. + +.|+ ...|.-...++.-.|++++|...|.+-++..+. +...++
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~-~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~ 108 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTR-R--LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKT 108 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHH-h--cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHH
Confidence 4578889999999999999999988777665 3 3466 567899999999999999999999998887643 777788
Q ss_pred HHHHHHHhCCCHHHHHHHH------hhcCC-C------CeehHHHHHHHH----------HhcCCHHHHHHHHhhCC---
Q 012234 82 ALIGMYAKCGSLDYARALL------DEMSD-K------DEVSYSAIISGY----------MVHGFVEKAMDLFQVMK--- 135 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~------~~~~~-~------~~~~~~~li~~~----------~~~~~~~~A~~~~~~~~--- 135 (468)
.+..++.... .+.+.| ..+.. | ....|..++..+ .+..++..|.-.+....
T Consensus 109 gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~ 185 (539)
T KOG0548|consen 109 GLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELL 185 (539)
T ss_pred hHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccc
Confidence 8887772110 011111 11110 0 111233332221 11112222222222111
Q ss_pred -------------CC---------CH-------------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012234 136 -------------RP---------GL-------------STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSI 180 (468)
Q Consensus 136 -------------~~---------~~-------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 180 (468)
.| .+ .-...+.+...+..+++.|++-+....+.. .+..-++..
T Consensus 186 ~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~ 263 (539)
T KOG0548|consen 186 FYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNI 263 (539)
T ss_pred ccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHH
Confidence 01 00 125567788888999999999999988764 444455667
Q ss_pred HHHHHccCChhhHHHHHHHHHHcCCCCc------hhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcC
Q 012234 181 FSLFSHFSNLKGGKEIHGYAVKNRYDRN------IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHG 254 (468)
Q Consensus 181 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (468)
..++...|....+........+.|...- ...+..+..+|.+.++++.++..|.+....... -....+..
T Consensus 264 aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk 338 (539)
T KOG0548|consen 264 AAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLK 338 (539)
T ss_pred HHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHH
Confidence 7788888888888877777766653211 112222445677788899999999885532111 11122233
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDP-VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 333 (468)
..+++........- +.|.. .-...-...+.+.|++..|...|.++++. .+.|...|..-.-+|.+.|.+..|++=
T Consensus 339 ~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 339 EAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 34555544444332 23332 22222356678899999999999999875 244788899999999999999999887
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc
Q 012234 334 VSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA 390 (468)
Q Consensus 334 ~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (468)
.+... ..| ....|..-..++....+++.|.+.|.+.++.+|.+......+.+++...
T Consensus 415 a~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 415 AKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 66552 344 3556666677777788999999999999999999888777777777653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-07 Score=72.74 Aligned_cols=94 Identities=11% Similarity=-0.088 Sum_probs=67.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
+..+...+...|++++|...|+... ..| +...|..+..++...|++++|+..|+++.+.+|.++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 4445666677777777777777652 333 56677777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhCC
Q 012234 392 RWDEADRVREQMKESG 407 (468)
Q Consensus 392 ~~~~A~~~~~~m~~~~ 407 (468)
++++|+..++...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777777777776643
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00017 Score=70.01 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=130.1
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHH--hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Q 012234 17 SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQA--CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLD 94 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 94 (468)
...+++.+|+.......++. |+.. |..++.+ +.+.|..++|..+++.....+.. |..|...+-.+|...|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 44678899999998888442 5543 3344444 46789999999888887766655 8888888999999999999
Q ss_pred HHHHHHhhcCCCCee--hHHHHHHHHHhcCCHHH----HHHHHhhCCCCCHhHHHHHHHHHHhC-CChH---------HH
Q 012234 95 YARALLDEMSDKDEV--SYSAIISGYMVHGFVEK----AMDLFQVMKRPGLSTWNAVISGLVQN-NRHE---------AV 158 (468)
Q Consensus 95 ~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~---------~a 158 (468)
+|..+|++..+.++. ....+..+|++.+.+.+ |+++++..++. ...+-++++...+. ..++ -|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999998875444 34445556777666544 77777766543 33333344444332 1121 23
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhhHHHHH-HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012234 159 LDLVREMQASG-VRPNAVTISSIFSLFSHFSNLKGGKEIH-GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236 (468)
Q Consensus 159 ~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 236 (468)
.+.++.+.+.+ -.-+..-...-...+...|.+++|.+++ ....+.-...+...-+.-++.+...+++++..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444432 1111222222233445667777777777 333333333344444555666666777766666655554
Q ss_pred C
Q 012234 237 G 237 (468)
Q Consensus 237 ~ 237 (468)
.
T Consensus 254 ~ 254 (932)
T KOG2053|consen 254 E 254 (932)
T ss_pred H
Confidence 4
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.9e-06 Score=73.65 Aligned_cols=187 Identities=10% Similarity=0.059 Sum_probs=104.4
Q ss_pred hHHHHHHHhhccCC---CcchHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012234 225 LHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDA--SKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299 (468)
Q Consensus 225 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (468)
+++++..++++.+. +..+|+.....+.+.|+. ++++.+++++.+.. +-|...|....-++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44455544444332 223344333333344432 45566666666543 2245566656566666666777777777
Q ss_pred HhhhhcCCCCCHhHHHHHHHHHhcc---CC----hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CChHHHHHHH
Q 012234 300 AMSGQYGIQPSVEHYACMVGVLSRA---RR----ISEATEFVSKM-PVKP-SAKVWGALLYGASIS----GDVELGKFVC 366 (468)
Q Consensus 300 ~~~~~~~~~p~~~~~~~l~~~~~~~---~~----~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~----g~~~~a~~~~ 366 (468)
++.+. . ..+...|+.....+.+. |. .++.+++..++ ...| |...|+.+...+... +...+|.+++
T Consensus 167 ~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 66643 1 22344454444433332 22 23455555333 3333 566777766666652 3456688888
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHcC------------------ChHHHHHHHHHHHhCCCCCCCceeE
Q 012234 367 DHLFEIEPENTGNYIIMANLYSQAG------------------RWDEADRVREQMKESGLAKIPGRSW 416 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~~~~~~~~~~~~ 416 (468)
.++...+|.++.++..|++.|+... ..++|.++++.+. ...|.....|
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 8888888888888889999988642 2367888888873 3444433334
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-08 Score=56.28 Aligned_cols=31 Identities=39% Similarity=0.728 Sum_probs=29.0
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhh
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREML 33 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 33 (468)
.||+.+||+||.+|++.|++++|.++|++|.
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 6999999999999999999999999999984
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.5e-06 Score=82.84 Aligned_cols=218 Identities=11% Similarity=0.113 Sum_probs=150.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhhcCCC--------CeehHHHHHHHHHhcCCHHHHHHHHhhCCC-CC-HhHHHHH
Q 012234 76 DLWICNALIGMYAKCGSLDYARALLDEMSDK--------DEVSYSAIISGYMVHGFVEKAMDLFQVMKR-PG-LSTWNAV 145 (468)
Q Consensus 76 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~l 145 (468)
+...|-..|......++.++|.+++++.... -...|.++++.-...|.-+...++|+++.+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3445667777777788888888888776642 234677777777777777777788887765 33 3467778
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCC
Q 012234 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-RNIYVATAIIDTYAKTGF 224 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 224 (468)
...|.+.+++++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++..+.+.-.+ -........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88888888888888888888765 2345556777777777888888888888777765322 234455556666677788
Q ss_pred hHHHHHHHhhccCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHH
Q 012234 225 LHGAQRVFDRFKGRS---LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP--VTFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 225 ~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a 294 (468)
.+.+..+|+...... ...|+..+..-.++|+.+.+..+|++....++.|-. ..|...+..--+.|+-+.+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 888888888776533 357888888888888888888888888877766643 3455555544445554433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-06 Score=82.64 Aligned_cols=158 Identities=8% Similarity=0.052 Sum_probs=107.4
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHH
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYAC 316 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 316 (468)
++..+-.|.....+.|++++|..+++...+. .|+ ......+...+.+.+++++|...+++.... .| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 3566777777888888888888888887774 555 445666777778888888888888887742 44 4555666
Q ss_pred HHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChH
Q 012234 317 MVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (468)
+..++.+.|++++|..+|+++. ..| +..++..+..++...|+.++|...|+++.+...+-...|+.++ ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 7777788888888888888774 333 3677777888888888888888888888877644444444332 2233
Q ss_pred HHHHHHHHHHhCC
Q 012234 395 EADRVREQMKESG 407 (468)
Q Consensus 395 ~A~~~~~~m~~~~ 407 (468)
.-..+++++.-.+
T Consensus 234 ~~~~~~~~~~~~~ 246 (694)
T PRK15179 234 ADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHcCccc
Confidence 3344555554433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-06 Score=67.61 Aligned_cols=123 Identities=12% Similarity=0.026 Sum_probs=99.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--
Q 012234 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-- 338 (468)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 338 (468)
.++++..+. .|+. +..+...+...|++++|...|+.+... -+.+...+..+..++.+.|++++|+..|++..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455665553 4443 445677788899999999999998843 23367888889999999999999999999883
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 339 VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
.+.+...+..+..++...|+.++|+..|+++.+..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 344688999999999999999999999999999999999988887776543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-05 Score=75.03 Aligned_cols=189 Identities=17% Similarity=0.287 Sum_probs=156.0
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012234 205 YDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284 (468)
Q Consensus 205 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (468)
.+|-...-..+...+.+.|-...|..+|+++. .|...+.+|...|+..+|..+..+..+ -+|++..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34555566678889999999999999999754 578889999999999999999888777 37899999999888
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELG 362 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 362 (468)
.....-+++|..+.+....+ .-..+.....+.++++++.+.|+.. .+.| ...+|..+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 87777788888888765532 2222333345578999999999765 4444 578899999999999999999
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
...|...+...|++...|+.+..+|.+.|+-.+|...+++..+...
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999988874
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3e-05 Score=75.71 Aligned_cols=162 Identities=11% Similarity=0.083 Sum_probs=101.3
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHH
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACM 317 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 317 (468)
+...|+.|.-. ...|++.-|...|-+-... -+....+|..+.-.+....+++.|...|...+ .+.| +...|...
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~ 890 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGE 890 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHH
Confidence 33445544433 4445555555555444333 12244556666666677788888888888877 3455 45556555
Q ss_pred HHHHhccCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChHH----------HHHHHHHHHhhCCCCcchH
Q 012234 318 VGVLSRARRISEATEFVSKM-------PVKPSAKVWGALLYGASISGDVEL----------GKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 318 ~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~----------a~~~~~~~~~~~~~~~~~~ 380 (468)
.......|+.-++..+|..- +.-|+...|..........|+.++ |--.+++.....|+...+|
T Consensus 891 Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy 970 (1238)
T KOG1127|consen 891 ALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAY 970 (1238)
T ss_pred HHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHH
Confidence 55555677888888877652 123444444444444455665554 3344555666689999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 381 IIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
...+...-+.+.+++|.++..+++.
T Consensus 971 ~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 971 AANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888776643
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.7e-08 Score=54.24 Aligned_cols=32 Identities=41% Similarity=0.502 Sum_probs=22.4
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 012234 72 HIKMDLWICNALIGMYAKCGSLDYARALLDEM 103 (468)
Q Consensus 72 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 103 (468)
|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.5e-05 Score=61.77 Aligned_cols=155 Identities=15% Similarity=0.070 Sum_probs=79.9
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCC
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH----SGL 290 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~ 290 (468)
-...|+..|++++|++..... .+..+...=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 344455666666666665552 22222222233444555566666666666542 244455545444433 344
Q ss_pred HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHH-HHHHHH
Q 012234 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM--PVKPSAKVWGALLYGASISGDVEL-GKFVCD 367 (468)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~ 367 (468)
+..|.-+|+++.. ...|+..+.+....++...|++++|..+++.. +...++.+...++......|...+ ..+.+.
T Consensus 189 ~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5666666666653 34566666666666666666666666666655 223345555555554444554433 334445
Q ss_pred HHHhhCCCC
Q 012234 368 HLFEIEPEN 376 (468)
Q Consensus 368 ~~~~~~~~~ 376 (468)
+.+...|.+
T Consensus 267 QLk~~~p~h 275 (299)
T KOG3081|consen 267 QLKLSHPEH 275 (299)
T ss_pred HHHhcCCcc
Confidence 555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.8e-06 Score=68.09 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=112.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc
Q 012234 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323 (468)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (468)
..+...+...|+-+....+....... .+.|.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44455666677777777666664332 233444555577777788888888888888774 446677888888888888
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHH
Q 012234 324 ARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401 (468)
Q Consensus 324 ~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 401 (468)
.|+++.|..-|.+. ...| ++...+.+...+.-.|+.+.|..++.......+.+..+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888777766 2333 567778888888888888888888888887777788888888888888888888877643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.1e-06 Score=78.28 Aligned_cols=212 Identities=9% Similarity=0.007 Sum_probs=170.6
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--CCcchHHHHHHHHHHcCC
Q 012234 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIWTAIISAYAAHGD 255 (468)
Q Consensus 178 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 255 (468)
..+...+.+.|-...|..+++... .+..++.+|+..|+..+|..+..+..+ +++..|..+........-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 445667788888899999888654 456689999999999999998877655 566788888888777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHH
Q 012234 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFV 334 (468)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~ 334 (468)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.+. .| ...+|-.+..+..+.++++.|.+.|
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~---nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI---NPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc---CccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 88999888765332 1122223334578999999999887643 33 5678888888888999999999988
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 335 SKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 335 ~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
... ...| +...||.+-.+|.+.|+-.+|...+.++.+.+-.+..+|...+-...+.|.+++|++.+.++.+...
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 776 3556 4789999999999999999999999999999988899999999999999999999999999977544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.3e-06 Score=70.80 Aligned_cols=182 Identities=12% Similarity=-0.023 Sum_probs=125.4
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCChHHHHHHHhhccCCC---cc---hH
Q 012234 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-R-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS---LI---IW 243 (468)
Q Consensus 172 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~---~~ 243 (468)
.....+..+...+...|+++.|...++.+.+.... | ....+..+..++...|++++|...++++.+.+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777888899999999999999999886422 1 12466778899999999999999999987532 22 45
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHH
Q 012234 244 TAIISAYAAH--------GDASKAVSLFNEMLNNGIQPDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314 (468)
Q Consensus 244 ~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 314 (468)
..+..++... |++++|.+.|+++... .|+.. ....+... ..+... . ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~--------------~~~~~~----~-~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM--------------DYLRNR----L-AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH--------------HHHHHH----H-HHHH
Confidence 5555666654 7889999999999875 44432 22111111 111000 0 0111
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 315 ACMVGVLSRARRISEATEFVSKMP-V---KP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
..+...|.+.|++++|+..+++.. . .| ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 245567888899999998888772 2 22 356888888999999999999998888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-05 Score=65.62 Aligned_cols=154 Identities=10% Similarity=0.144 Sum_probs=115.3
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 294 (468)
-+..|...|+++.+....+.+..+. ..+...++.+++...+++..... +.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777788777655543332221 01123566778888888877653 55778899999999999999999
Q ss_pred HHHHHHhhhhcCCCC-CHhHHHHHHHH-HhccCC--hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 295 WDIFNAMSGQYGIQP-SVEHYACMVGV-LSRARR--ISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 295 ~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~~~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
...|++..+. .| +...+..+..+ +...|+ .++|.+++++.. ..| +...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998853 44 66777777776 467777 599999999883 444 678889999999999999999999999
Q ss_pred HHhhCCCCcchH
Q 012234 369 LFEIEPENTGNY 380 (468)
Q Consensus 369 ~~~~~~~~~~~~ 380 (468)
+++..|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999998876544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00071 Score=62.13 Aligned_cols=384 Identities=13% Similarity=0.152 Sum_probs=224.7
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
+-|..+|+.||+-+..+ -++++.+.++++. . ..+-....|..-|..-....+++.+.++|.+.+..-. +...|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~-~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLV-N-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHh-c-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 34788999999987766 8999999999998 3 2455677889999999999999999999999987654 4555555
Q ss_pred HHHHHHh-CCCHHHHH----HHHhhcC-----C-CCeehHHHHHHH---------HHhcCCHHHHHHHHhhCCC-C--CH
Q 012234 83 LIGMYAK-CGSLDYAR----ALLDEMS-----D-KDEVSYSAIISG---------YMVHGFVEKAMDLFQVMKR-P--GL 139 (468)
Q Consensus 83 l~~~~~~-~g~~~~A~----~~~~~~~-----~-~~~~~~~~li~~---------~~~~~~~~~A~~~~~~~~~-~--~~ 139 (468)
-++--.+ .|+...+. +.|+-.. + .+...|+..+.- +..+.+++...+++.++.. | |.
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5543222 33333321 1222111 1 244455555532 4445566777788877764 1 11
Q ss_pred -------hHHHHHHHH-------HHhCCChHHHHHHHHHHHH--CCC-------CCCH----------------------
Q 012234 140 -------STWNAVISG-------LVQNNRHEAVLDLVREMQA--SGV-------RPNA---------------------- 174 (468)
Q Consensus 140 -------~~~~~l~~~-------~~~~g~~~~a~~~~~~m~~--~~~-------~p~~---------------------- 174 (468)
..|-.=|+. --+...+-.|.++++++.. .|. +|..
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 111111110 1112233344444444432 111 1100
Q ss_pred --------------HHHHHHH---------------------HHHHccCC-------hhhHHHHHHHHHHcCCCCchhHH
Q 012234 175 --------------VTISSIF---------------------SLFSHFSN-------LKGGKEIHGYAVKNRYDRNIYVA 212 (468)
Q Consensus 175 --------------~~~~~l~---------------------~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 212 (468)
.+|...+ ..+...|+ .+++..+++.....-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0010000 01111111 12233333333322111222222
Q ss_pred HHHHHHHHhc---CChHHHHHHHhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 012234 213 TAIIDTYAKT---GFLHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSA 284 (468)
Q Consensus 213 ~~l~~~~~~~---g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~ 284 (468)
..+...--.. ...+.....++++.. .-..+|...+..-.+......|..+|.+..+.+..+ .....++++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 2222111111 123344444444433 122478888888888888999999999999887777 67778888887
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCh
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKPS--AKVWGALLYGASISGDV 359 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~ 359 (468)
+|. ++.+-|.++|+.-.+.+|- ++..-...++-+...++-..+..+|++.. ..|+ ..+|..++.--..-|+.
T Consensus 412 ~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 775 7889999999988776543 33445667778888899999999999883 2333 57899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCc----chHHHHHHHHHHcCChH
Q 012234 360 ELGKFVCDHLFEIEPENT----GNYIIMANLYSQAGRWD 394 (468)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 394 (468)
..+.++-++.....|.+. ..-..+.+-|.-.+.+.
T Consensus 489 ~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 999998888877665221 12233445555455443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-05 Score=66.80 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHH
Q 012234 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGAL 349 (468)
Q Consensus 272 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l 349 (468)
.|+......+-..+...|+-+....+...... ....+......++....+.|++..|+..+++.. .++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44433225566777788888888888777653 334466677778999999999999999999983 56789999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
..+|.+.|+++.|...|.++.++.|.++...+.|+..|.-.|+++.|..++......+-
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999988876654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00018 Score=64.28 Aligned_cols=226 Identities=11% Similarity=0.083 Sum_probs=132.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNA-VTISSIFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (468)
.+-..+...++.++|+.+..++++. .|+. ..++....++...| +++++...+..+.+.+ +.+..+++.-.-++.+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 3334455566777777777777664 3333 23444444444555 4567777777766654 2333344433333444
Q ss_pred cCC--hHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC---
Q 012234 222 TGF--LHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS---GL--- 290 (468)
Q Consensus 222 ~g~--~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~--- 290 (468)
.|+ .++++.+++++.+ +|..+|+...-++...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 444 2566777766655 34567777777778888888888888888876543 445555544444333 22
Q ss_pred -HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhcc----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC------
Q 012234 291 -VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA----RRISEATEFVSKM-PVKP-SAKVWGALLYGASISG------ 357 (468)
Q Consensus 291 -~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g------ 357 (468)
.+....+..+++.. .+-+...|+.+...+... +...+|.+.+.+. ...| +......|+..|+...
T Consensus 198 ~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 198 MRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred cHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhh
Confidence 24566666566542 233667787777777663 3445677777665 2233 4666777777776532
Q ss_pred ------------ChHHHHHHHHHHHhhCCC
Q 012234 358 ------------DVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 358 ------------~~~~a~~~~~~~~~~~~~ 375 (468)
..++|..+++.+.+.+|-
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235677777776544553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-06 Score=64.62 Aligned_cols=119 Identities=9% Similarity=0.013 Sum_probs=97.0
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
....-.+...+...|++++|.++|+-+. ..| +..-|..|..++...|++++|+..|.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3444556667788999999999999873 344 67888999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 012234 389 QAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMRE 452 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (468)
..|+.+.|.+-|+..+...- .+|...++.++.+..+..+.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhhc
Confidence 99999999999998876431 245556666666666665543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-05 Score=64.77 Aligned_cols=244 Identities=9% Similarity=0.042 Sum_probs=162.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 012234 146 ISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 225 (468)
++-+.-.|++..++..-...... +.+...-..+.++|...|.+..... .+.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 45566678888888776655433 2344444556677777776654332 222222 33333444344444444454
Q ss_pred HHHHHH-HhhccCCCc---chHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 012234 226 HGAQRV-FDRFKGRSL---IIWT-AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300 (468)
Q Consensus 226 ~~a~~~-~~~~~~~~~---~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (468)
+.-+.- .+.+..+.. .++. .-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 333333222 1232 33457889999999999887621 222222334456677889999999999
Q ss_pred hhhhcCCCCCHhHHHHHHHHHh----ccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 301 MSGQYGIQPSVEHYACMVGVLS----RARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 301 ~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
|.. -.+..+.+.|..++. -.+...+|.-+|+++. ..|++.+.+....++...|++++|..+++.++..++
T Consensus 163 mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 984 234566776666665 3457999999999994 788999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHcCChHHHH-HHHHHHHh
Q 012234 375 ENTGNYIIMANLYSQAGRWDEAD-RVREQMKE 405 (468)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 405 (468)
.++.+...++-+-...|.-.++. +.+.+++.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999998888888876554 45565544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.4e-05 Score=76.11 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
..++..+-..|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3444555566777778888888888888888888888888888876
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0011 Score=60.93 Aligned_cols=367 Identities=13% Similarity=0.093 Sum_probs=202.5
Q ss_pred CCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC--CeehHHHHHH
Q 012234 39 RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK--DEVSYSAIIS 116 (468)
Q Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~ 116 (468)
|-|..+|..||+-+... ..+++.+.++++...- +.....|..-|..-.+..+++..+++|.+.... +...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 56888999999987655 8999999999998753 446778899999999999999999999987753 5666666554
Q ss_pred HHHh-cCCHHHH----HHHHhhCCC------CCHhHHHHHHHH---------HHhCCChHHHHHHHHHHHHCCCCC----
Q 012234 117 GYMV-HGFVEKA----MDLFQVMKR------PGLSTWNAVISG---------LVQNNRHEAVLDLVREMQASGVRP---- 172 (468)
Q Consensus 117 ~~~~-~~~~~~A----~~~~~~~~~------~~~~~~~~l~~~---------~~~~g~~~~a~~~~~~m~~~~~~p---- 172 (468)
--.+ .|+...+ .+.|+-... .+...|+..+.. |..+.+.+...+++++++..-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3222 2222221 112221111 222344444432 344456677888888887531110
Q ss_pred --CHHHHHHHHHHH-------HccCChhhHHHHHHHHHH--cCCCCchhH---------------HHHHHHHHHhcCChH
Q 012234 173 --NAVTISSIFSLF-------SHFSNLKGGKEIHGYAVK--NRYDRNIYV---------------ATAIIDTYAKTGFLH 226 (468)
Q Consensus 173 --~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~~~~g~~~ 226 (468)
|-.+|..-++.. .+...+..|+++++++.. .|......+ +..+|.-- +.+-+.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL~ 253 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCcc
Confidence 112222222211 223456667777776654 232211111 21222111 111000
Q ss_pred ---------HHHHHHhhccC---CCcchHHH-------HHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHHHHHH
Q 012234 227 ---------GAQRVFDRFKG---RSLIIWTA-------IISAYAAHGD-------ASKAVSLFNEMLNNGIQPDPVTFTA 280 (468)
Q Consensus 227 ---------~a~~~~~~~~~---~~~~~~~~-------l~~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~ 280 (468)
...-.+++... -.+..|.- .-+.+...|+ .+++..+++..+..-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111000 00011111 1112222332 3455555555544322233344443
Q ss_pred HHHHHhcc---CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC---CCC-CHHHHHHHHHHH
Q 012234 281 VLSACAHS---GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP---VKP-SAKVWGALLYGA 353 (468)
Q Consensus 281 l~~~~~~~---~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~-~~~~~~~l~~~~ 353 (468)
+.+.--.. ...+.....++++.......|+ .+|..++....+..-+..|..+|.+.+ ..+ ++.+..+++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 33221111 1244555666666654444554 356677777777788888888888774 223 455666666554
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
+ .++.+.|.++|+-.++..++++..-...++.+.+.|+-..|..+|++....++.+
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 4 4677888888888888888888777788888888888888888888888775543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.7e-06 Score=65.56 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=73.5
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
......+...+...|++++|.+.++++. .+.+...|..+...+...|++++|...++++.+.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3445556667777788888887777762 23356777777788888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 012234 389 QAGRWDEADRVREQMKESG 407 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~~ 407 (468)
..|++++|...+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888888777643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.3e-05 Score=68.06 Aligned_cols=139 Identities=13% Similarity=0.116 Sum_probs=77.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCC
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARR 326 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 326 (468)
..+...|.+++|+..++.+... .+-|........+.+...++.++|.+.++++... .|+ ....-.+..+|.+.|+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCC
Confidence 3444556666666666665554 2223344444455566666666666666666532 443 3344455566666666
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 327 ISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 327 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+.+|+.+++... .+.|+..|..|..+|...|+..++.... +..|...|++++|...+....
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHHH
Confidence 666666665552 3345566666666666666655554433 334556666777777766666
Q ss_pred hCC
Q 012234 405 ESG 407 (468)
Q Consensus 405 ~~~ 407 (468)
+..
T Consensus 453 ~~~ 455 (484)
T COG4783 453 QQV 455 (484)
T ss_pred Hhc
Confidence 544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00012 Score=73.08 Aligned_cols=234 Identities=7% Similarity=0.009 Sum_probs=112.9
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhc
Q 012234 42 GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121 (468)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 121 (468)
...+..|+..+...+++++|.++.+...+..+. ....|-.+...+...++.+.+..+ .+ +......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~-----------l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NL-----------IDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hh-----------hhhcccc
Confidence 345666666666667777777766655554322 223333333355555554444433 11 1111222
Q ss_pred CCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 012234 122 GFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGY 199 (468)
Q Consensus 122 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 199 (468)
.++.-...+...+.. .+..++..+..+|.+.|+.++|..+++++++.. +-|....+.+.-.++.. ++++|.+++..
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 222111222222221 222345556666666666666666666666654 34455555555555555 66666666555
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHH
Q 012234 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDPVTF 278 (468)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~ 278 (468)
++.. +...+++..+..++.++...++. +++.-..+.+.+... |..--..++
T Consensus 175 AV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 175 AIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred HHHH---------------HHhhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHHHHHhhhccchhHHHH
Confidence 4432 44445555555555555443332 122222222222221 222223344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHh
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLS 322 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 322 (468)
-.+-..|...++++++..+++.+.+. .| |.....-++..|.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~---~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEH---DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhc---CCcchhhHHHHHHHHH
Confidence 44555666666777777777776632 33 3444445555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00013 Score=66.13 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=107.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGAS 354 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~ 354 (468)
-|..-+ .+...|+++.|+..++.+.+. .+.|+.......+.+.+.++..+|.+.++++ ...|+ ...+..+..++.
T Consensus 309 ~YG~A~-~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRAL-QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHH-HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 344444 345679999999999999864 3445666677789999999999999999998 35666 677888899999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+.|++.+|+.++......+|+++..|..|+.+|...|+..+|..-..+....
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999887776553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.8e-06 Score=73.76 Aligned_cols=123 Identities=13% Similarity=0.129 Sum_probs=98.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGAS 354 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 354 (468)
....++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++.- .+.+...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566667778888888888888864 355 34457777777788888888887762 2335667777778889
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
..++++.|..+.+++.+..|.+..+|..|+.+|.+.|++++|+..+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0002 Score=59.17 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=107.3
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCCcchHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWT---AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL 290 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 290 (468)
.++-+....|+.+.|...++.+..+-+.++. .-.-.+-..|++++|+++++.+.+.. +.|..++..-+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 3444445556666666665554432121111 11123345677888888888887764 3455666655555666677
Q ss_pred HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC---ChHHHHHH
Q 012234 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISG---DVELGKFV 365 (468)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g---~~~~a~~~ 365 (468)
--+|++-+....+ .+..|...|.-+...|...|++++|.-.++++. ..| ++..+..+...+...| +.+.+.+.
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6677777777765 456788888888888888888888888888873 444 5666666666655444 66778888
Q ss_pred HHHHHhhCCCCcchHHH
Q 012234 366 CDHLFEIEPENTGNYII 382 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~ 382 (468)
|.+++++.|.+...+..
T Consensus 214 y~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHhChHhHHHHHH
Confidence 99999988865554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00016 Score=71.40 Aligned_cols=144 Identities=11% Similarity=0.082 Sum_probs=116.0
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012234 204 RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--R-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTA 280 (468)
Q Consensus 204 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 280 (468)
....+...+..|.....+.|.+++|..+++.+.+ | +...+..++..+.+.+++++|+..+++..... +-+......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3456678888899999999999999999999876 3 34678888899999999999999999998863 234566777
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALL 350 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~ 350 (468)
+..++...|++++|..+|+++... .+-+..++..+...+...|+.++|...|++.. ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 888899999999999999999863 23347788899999999999999999999872 344455555444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00012 Score=60.35 Aligned_cols=163 Identities=15% Similarity=0.159 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
.|..++-+....|+.+.|...++++... + |.+. .-..-...+-..|++++|.++++.+.++ -+.|..++-.-+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 4555666777889999999999998876 3 4433 2222222355679999999999999975 24466777777777
Q ss_pred HhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC---ChHH
Q 012234 321 LSRARRISEATEFVSKM--PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG---RWDE 395 (468)
Q Consensus 321 ~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 395 (468)
.-..|+.-+|++-+.+. ....|...|.-+...|...|+++.|.-.+++++-..|-++..|..+++.+.-.| +..-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788877888777665 256789999999999999999999999999999999999999999999988766 4567
Q ss_pred HHHHHHHHHhCCC
Q 012234 396 ADRVREQMKESGL 408 (468)
Q Consensus 396 A~~~~~~m~~~~~ 408 (468)
|.++|.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8888988877554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-05 Score=70.64 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 012234 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289 (468)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 289 (468)
.....|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++.... .+-+...+..-...+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344566777778899999999999999988888888899999999999999999998865 2335666777777889999
Q ss_pred CHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCCCC
Q 012234 290 LVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMPVK 340 (468)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 340 (468)
+++.|+.+.+++.. ..|+ -.+|..|..+|...|++++|+..++.++..
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999984 3664 568999999999999999999999988633
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.5e-05 Score=60.01 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=88.4
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CC
Q 012234 262 LFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PV 339 (468)
Q Consensus 262 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 339 (468)
.+++.... .|+ ......+...+...|++++|...|+.+... .+.+...+..+...+...|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555543 343 345566777788889999999999888753 2446778888888899999999999988877 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 340 KP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 340 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
.| +...+..+...+...|+++.|...++++++..|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 34 577888888899999999999999999999998776533
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-06 Score=49.73 Aligned_cols=35 Identities=40% Similarity=0.678 Sum_probs=29.0
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCc
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDG 42 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 42 (468)
.+||++|.+|++.|++++|.++|++|. +.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~-~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEML-ERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCC
Confidence 478888888888888888888888888 77788873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.2e-05 Score=59.26 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHH
Q 012234 288 SGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-VKPSA----KVWGALLYGASISGDVEL 361 (468)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~ 361 (468)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.+. ..|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5556666666666665421111 11222334455566666666666666652 12222 233445566666777777
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
|+..++.. ...+..+..+..++++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77766542 222334456666777777777777777777653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.8e-05 Score=59.04 Aligned_cols=122 Identities=14% Similarity=0.166 Sum_probs=67.3
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCc----chHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch--HHHH
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDG----VTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDL--WICN 81 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 81 (468)
.|..++..+. .++...+.+.++.+. ... |+. .....+...+...|++++|...|+.+......++. ...-
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~-~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLA-KDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHH-HHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 4555555553 666677777777776 322 222 22333445566667777777777777766533322 2333
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCC--CeehHHHHHHHHHhcCCHHHHHHHHhh
Q 012234 82 ALIGMYAKCGSLDYARALLDEMSDK--DEVSYSAIISGYMVHGFVEKAMDLFQV 133 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~ 133 (468)
.+..++...|++++|+..++....+ .+..+......+.+.|+.++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4566666677777777766654332 223344445555556666666555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=48.51 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=25.0
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCC
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRP 40 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 40 (468)
+.+||.+|.+|++.|+++.|.++|+.|. +.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~-~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMK-EQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCC
Confidence 3577777777777777777777777777 566665
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=7e-06 Score=55.21 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG-RWDEADRVREQMKE 405 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 405 (468)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999998765
|
... |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.1e-06 Score=48.04 Aligned_cols=34 Identities=38% Similarity=0.740 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 174 (468)
+||.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888999999999999999999999988888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-06 Score=59.58 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=50.6
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHH
Q 012234 324 ARRISEATEFVSKMP-VKP---SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 399 (468)
.|+++.|+.+++++. ..| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355666666666652 122 344555567777777777777777777 555666666666778888888888888887
Q ss_pred HHH
Q 012234 400 REQ 402 (468)
Q Consensus 400 ~~~ 402 (468)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.5e-05 Score=55.45 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=74.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 314 YACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
+..+...+...|++++|...++++ ...| +...+..+...+...|+++.|...+++.....|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 2333 34667778888888899999999999998888888888889999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 012234 392 RWDEADRVREQMKES 406 (468)
Q Consensus 392 ~~~~A~~~~~~m~~~ 406 (468)
++++|...+.+..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.2e-05 Score=57.44 Aligned_cols=94 Identities=11% Similarity=0.020 Sum_probs=54.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---cchHHHHHH
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPEN---TGNYIIMAN 385 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 385 (468)
+..++..+.+.|++++|.+.|.++. ..|+ ...+..+..++...|+++.|...++.+....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444555555566666665555552 1221 2344555666666666666666666666665543 345666666
Q ss_pred HHHHcCChHHHHHHHHHHHhCC
Q 012234 386 LYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++.+.|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6666666666666666666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.2e-06 Score=46.70 Aligned_cols=33 Identities=33% Similarity=0.608 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRP 172 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 172 (468)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.8e-06 Score=53.72 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=52.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 349 LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+...+...|++++|+..|+++++..|.++.++..++.++.+.|++++|..+++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678899999999999999999999999999999999999999999999999987643
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0026 Score=56.36 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhc-CCCCC--Hh
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-----PDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQY-GIQPS--VE 312 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~--~~ 312 (468)
.+..+...+.+.|++++|.++|++....... .+.. .|...+-++...||...|...+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3556677888999999999999988764322 2222 23334446667789999999999887431 22222 34
Q ss_pred HHHHHHHHHhc--cCChHHHHHHHHhCCCCCCHHHHHHHH
Q 012234 313 HYACMVGVLSR--ARRISEATEFVSKMPVKPSAKVWGALL 350 (468)
Q Consensus 313 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~l~ 350 (468)
....|+.++-. ...+++|+.-|+.+. +.|.+.-..|+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l~ 275 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHHH
Confidence 45667777754 346888888888885 44555444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00014 Score=55.07 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALL 350 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~ 350 (468)
++..+...+...|++++|...|..+...+.-.+ ....+..+...+.+.|+++.|...|+++. ..|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555666667777777777777765321111 12345556677777777777777777652 2222 45667777
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
.++...|+.++|...++++.+..|+++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 77888888888888888888888877655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00034 Score=62.01 Aligned_cols=266 Identities=14% Similarity=0.080 Sum_probs=155.5
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChh
Q 012234 116 SGYMVHGFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN-AVTISSIFSLFSHFSNLK 191 (468)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~ 191 (468)
..+.+..++.+|+..+....+ |+ ..-|..-+..+...|++++|+--.+.-++. +|. .....-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 344555556666666655543 32 223444445555556666665555444332 221 123333344444444444
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC---c--chHHHH-HHHHHHcCChHHHHHHHHH
Q 012234 192 GGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS---L--IIWTAI-ISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~--~~~~~l-~~~~~~~g~~~~a~~~~~~ 265 (468)
+|.+.++. ...+ ....++..++.+...+ + ..|..+ ..++...|++++|...--.
T Consensus 135 ~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 44444430 0000 1122223333332211 2 233333 3466778888888887666
Q ss_pred HHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHH-------------HHHHHhccCChHHH
Q 012234 266 MLNNGIQPDPVTFTAVLS--ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC-------------MVGVLSRARRISEA 330 (468)
Q Consensus 266 m~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-------------l~~~~~~~~~~~~A 330 (468)
..+.. ++ ..+...++ ++-..++.+.+...|.+.. ...|+...-.. =..-..+.|++.+|
T Consensus 195 ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 195 ILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 65532 11 12222232 3445677888888888877 34555322211 12234578899999
Q ss_pred HHHHHhC-C-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 331 TEFVSKM-P-----VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 331 ~~~~~~~-~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
.+.|.+. . .+|+...|.....+..+.|+..+|+.-.+.+.+++|.-...+..-+.++...++|++|.+-+++..
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877 2 445566777777788899999999999999999998888888888999999999999999988887
Q ss_pred hCCCC
Q 012234 405 ESGLA 409 (468)
Q Consensus 405 ~~~~~ 409 (468)
+....
T Consensus 349 q~~~s 353 (486)
T KOG0550|consen 349 QLEKD 353 (486)
T ss_pred hhccc
Confidence 65443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.8e-05 Score=67.57 Aligned_cols=108 Identities=12% Similarity=0.024 Sum_probs=90.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGD 358 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 358 (468)
-...+...|+++.|+..|+++.+. -+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 455677889999999999999863 2335778888889999999999999999988 3444 57788999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc
Q 012234 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQA 390 (468)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (468)
+++|+..|+++++++|.++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988887776665444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=62.25 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=67.2
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGASISGDVEL 361 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~ 361 (468)
..+.+++++|+..|.+.++ +.| |+..|..=..+|.+.|.++.|++=.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4456677777777777763 344 4555555666777777777777666554 34554 4577777777777777777
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
|++.|+++++++|+|......|-.+=-+.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 777777777777777655555544433333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=2e-05 Score=52.79 Aligned_cols=54 Identities=20% Similarity=0.411 Sum_probs=47.3
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
...|++++|++.|+++...+|.+..+...++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999999999999999998876643
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00042 Score=59.28 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=89.5
Q ss_pred CCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 308 QPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISG---DVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
+-|...|-.|...|...|+++.|..-|.+.. ..+++..+..+..++.... +..++..++++++..+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4578999999999999999999999998873 3456777777777765433 5678999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 012234 383 MANLYSQAGRWDEADRVREQMKESGLAKIP 412 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 412 (468)
|+..+...|++.+|...|+.|.+..-...|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987664433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.4e-05 Score=43.70 Aligned_cols=30 Identities=40% Similarity=0.670 Sum_probs=24.1
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCC
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPV 37 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~ 37 (468)
++||.+|++|++.|++++|.++|++|. +.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~-~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMR-ERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHh-HCc
Confidence 478888888888888888888888887 544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0023 Score=55.02 Aligned_cols=58 Identities=17% Similarity=0.011 Sum_probs=38.8
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchHHH---HHHHHHHHhCCCHHHHHHHHhhcCC
Q 012234 47 SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWIC---NALIGMYAKCGSLDYARALLDEMSD 105 (468)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~ 105 (468)
.....+...|+++.|.+.|+.+....+.+ .... -.++.++.+.+++++|...|++..+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444556788888888888887765443 2222 3456777788888888888877765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.026 Score=53.97 Aligned_cols=183 Identities=11% Similarity=-0.018 Sum_probs=89.1
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHh-CCCC--------chHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeeh
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIES-HIKM--------DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVS 110 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 110 (468)
|.+..|..+.......-+++.|...|-+...- |++. +...-.+-+. +--|++++|+++|-++..+|.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh--
Confidence 66777777776666655666666555443221 1110 1111111122 224778888888877766553
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CC---HhHHHHHHHHHHhCCChHHHHHHHHHHHH------------------
Q 012234 111 YSAIISGYMVHGFVEKAMDLFQVMKR--PG---LSTWNAVISGLVQNNRHEAVLDLVREMQA------------------ 167 (468)
Q Consensus 111 ~~~li~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~------------------ 167 (468)
.|..+.+.|++-...++++.-.. .| ...|+.+...+.....|++|.+.|..-..
T Consensus 766 ---Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE 842 (1189)
T KOG2041|consen 766 ---AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELE 842 (1189)
T ss_pred ---hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHH
Confidence 23445555666655555554322 11 12455555555555555555554433211
Q ss_pred ---CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012234 168 ---SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238 (468)
Q Consensus 168 ---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (468)
..++.+....-.+..++.+.|.-++|.+.|-.. + .| .+.++.+...++|.+|.++-+...-|
T Consensus 843 ~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~l~ 907 (1189)
T KOG2041|consen 843 VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQLP 907 (1189)
T ss_pred HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccch
Confidence 112334444445555555556555555544221 1 11 12344555556666666665554433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00035 Score=63.98 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=80.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhcc
Q 012234 246 IISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRA 324 (468)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 324 (468)
....+...|++++|+..|+++++.. +-+...+..+..++...|++++|+..++++... .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999863 335678888889999999999999999999853 45 577888899999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHH
Q 012234 325 RRISEATEFVSKM-PVKPSAKVWGAL 349 (468)
Q Consensus 325 ~~~~~A~~~~~~~-~~~~~~~~~~~l 349 (468)
|++++|+..|++. ...|+.......
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999987 355654433333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00026 Score=57.57 Aligned_cols=81 Identities=12% Similarity=0.060 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
..+..+...+...|++++|...|++.. ..|+ ...+..+...+...|++++|...+.++.+..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345555566666677777776666552 1121 35677778888888888888888888888888888888888888
Q ss_pred HHHcCC
Q 012234 387 YSQAGR 392 (468)
Q Consensus 387 ~~~~g~ 392 (468)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 887776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00026 Score=57.41 Aligned_cols=94 Identities=12% Similarity=-0.058 Sum_probs=73.8
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
...+..+...+...|++++|+..|++.. ..|+ ..++..+...+...|++++|+..++++....|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556667777778888888888887762 2222 3578888899999999999999999999999988888888888
Q ss_pred HHH-------HcCChHHHHHHHHHHH
Q 012234 386 LYS-------QAGRWDEADRVREQMK 404 (468)
Q Consensus 386 ~~~-------~~g~~~~A~~~~~~m~ 404 (468)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887766665543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0025 Score=56.53 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=24.1
Q ss_pred HHHHHhc-CCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012234 115 ISGYMVH-GFVEKAMDLFQVMKR-----PG----LSTWNAVISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 115 i~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
...|-.. |++++|++.|++..+ .. ...+..+...+.+.|++++|+++|++...
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444 555555555544432 11 11344445555566666666666655544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00094 Score=52.02 Aligned_cols=89 Identities=10% Similarity=-0.026 Sum_probs=77.7
Q ss_pred HHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChH
Q 012234 317 MVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWD 394 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (468)
..--+...|++++|..+|+-+. ...+..-|..|..++...++++.|+..|..+..+.++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444567899999999998773 34467778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 012234 395 EADRVREQMKE 405 (468)
Q Consensus 395 ~A~~~~~~m~~ 405 (468)
.|+.-|+..+.
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988876
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.7e-05 Score=50.24 Aligned_cols=59 Identities=22% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
...+...++++.|.+.+++++..+|.++..+...+.+|.+.|++.+|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999987554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0065 Score=57.26 Aligned_cols=58 Identities=7% Similarity=-0.118 Sum_probs=27.6
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEM 103 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 103 (468)
|....+.+-+..+...|.+++|.++- ++.....-|..|..-....=+++-|.+.|.+.
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred cccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44444555555666777777665431 12222333444444444444455555444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0075 Score=51.89 Aligned_cols=173 Identities=14% Similarity=0.117 Sum_probs=101.7
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCCc---c---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKGRSL---I---IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH- 287 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~---~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 287 (468)
....+...|++++|...|+.+....+ . ..-.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 44445667788888888777765322 1 1234456777888888888888888775222112233333333221
Q ss_pred -c---------------CC---HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHH
Q 012234 288 -S---------------GL---VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGA 348 (468)
Q Consensus 288 -~---------------~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 348 (468)
. .| ...|...|+.+++. -|+. .-..+|...+..+...- ...-..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S-------------~ya~~A~~rl~~l~~~l-a~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNS-------------QYTTDATKRLVFLKDRL-AKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCC-------------hhHHHHHHHHHHHHHHH-HHHHHH
Confidence 1 11 23444555555544 2332 22233333332221000 011123
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 349 LLYGASISGDVELGKFVCDHLFEIEPENT---GNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+..-|.+.|.+..|..-++.+++..|+.+ .+...++.+|.+.|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45668889999999999999999877644 456788899999999999998876653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.80 E-value=3e-05 Score=42.42 Aligned_cols=30 Identities=33% Similarity=0.646 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGV 170 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 170 (468)
+||.++++|.+.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.8e-05 Score=52.33 Aligned_cols=79 Identities=13% Similarity=0.267 Sum_probs=37.0
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHH
Q 012234 253 HGDASKAVSLFNEMLNNGI-QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEA 330 (468)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A 330 (468)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..++++ . ...| +......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3555666666666555422 11233333355556666666666666655 2 1112 122223334555555555555
Q ss_pred HHHHH
Q 012234 331 TEFVS 335 (468)
Q Consensus 331 ~~~~~ 335 (468)
++.|+
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.043 Score=52.97 Aligned_cols=115 Identities=11% Similarity=0.080 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 012234 272 QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLY 351 (468)
Q Consensus 272 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~ 351 (468)
.-...+.+.-+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..++|++-+++-+..+ .+.-|.-.+.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 3344455666667778899999988877765 5888888888899999999999999888875 2566777889
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
+|.+.|+.++|...+-+.-. . .....+|.+.|++.+|.++--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~----l----~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG----L----QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCC----h----HHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999888765322 1 1678889999999999887544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0014 Score=57.92 Aligned_cols=133 Identities=16% Similarity=0.207 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA-CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 57777888888888999999999987543 2233344333333 333567777999999998754 5567778888888
Q ss_pred HhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 321 LSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 321 ~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
+.+.|+.+.|..+|++.. .-|. ...|...+..-.+.|+.+.+..+.+++.+..|.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 899999999999998873 2233 35899999999999999999999999999887643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.031 Score=50.75 Aligned_cols=375 Identities=11% Similarity=0.081 Sum_probs=200.2
Q ss_pred HhcCCChhHHHHHHHHhhhCCCCCCCcch------HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH--HH
Q 012234 16 YSQGGFYEECKALFREMLNSPVLRPDGVT------VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG--MY 87 (468)
Q Consensus 16 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~ 87 (468)
+-+++++++|..+|.+..++. ..++.. -+.+++++.. .+.+.....+....+..+ ...|-.+.. .+
T Consensus 16 Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG---KSAYLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC---CchHHHHHHHHHH
Confidence 457889999999999987442 233222 2345555543 455655555555554432 222333333 34
Q ss_pred HhCCCHHHHHHHHhhcCCC---------C---------eehHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCHhH
Q 012234 88 AKCGSLDYARALLDEMSDK---------D---------EVSYSAIISGYMVHGFVEKAMDLFQVMKR--------PGLST 141 (468)
Q Consensus 88 ~~~g~~~~A~~~~~~~~~~---------~---------~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~~~~ 141 (468)
.+.+++++|.+.+..-.+. | ...=+..+.++...|++.+++.+++++.. -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4688899988887654331 1 11124566778899999999999988864 56777
Q ss_pred HHHHHHHHHhC--------CC-------hHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHcc--CChhhHHHHHH
Q 012234 142 WNAVISGLVQN--------NR-------HEAVLDLVREMQAS------GVRPNAVTISSIFSLFSHF--SNLKGGKEIHG 198 (468)
Q Consensus 142 ~~~l~~~~~~~--------g~-------~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~ 198 (468)
||.++-.+.++ .. ++.++-+.++|... .+.|....+..++....-. ....--.++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 87755444332 11 22233333333221 1234333333333332211 12222334444
Q ss_pred HHHHcCCCCchhH-HHHHHHHHHhcCChHHHHHHHhhccC--------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 199 YAVKNRYDRNIYV-ATAIIDTYAKTGFLHGAQRVFDRFKG--------RSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 199 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
...+.-+.|+-.. ...+...+.+ +.+++..+-+.+.. .=+.+|..++....+.++...|...+.-+...
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 4444444444322 2223333332 33333333332221 22345666666667777777776666554432
Q ss_pred CCCCCHHH---------------------HH------------------------HHH---HHHhccCC-HHHHHHHHHH
Q 012234 270 GIQPDPVT---------------------FT------------------------AVL---SACAHSGL-VDKAWDIFNA 300 (468)
Q Consensus 270 ~~~p~~~~---------------------~~------------------------~l~---~~~~~~~~-~~~a~~~~~~ 300 (468)
.|+... ++ .++ .-+-+.|. -++|+.+++.
T Consensus 328 --dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 --DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 222110 10 011 11222333 5667777776
Q ss_pred hhhhcCCCC-CHhHHHHHH----HHHhc---cCChHHH---HHHHHhCCCCC----CHHHHHHHHHH--HHHcCChHHHH
Q 012234 301 MSGQYGIQP-SVEHYACMV----GVLSR---ARRISEA---TEFVSKMPVKP----SAKVWGALLYG--ASISGDVELGK 363 (468)
Q Consensus 301 ~~~~~~~~p-~~~~~~~l~----~~~~~---~~~~~~A---~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~ 363 (468)
+.+ +.| |...-+.+. ..|.. ...+.+- +.++.+.++.| +...-|.|.++ +..+|++.++.
T Consensus 406 il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 406 ILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 663 233 332222221 22221 1222222 23334444444 34566666665 56799999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
-.-.-..+..| ++.+|..++-++....++++|..++..+.
T Consensus 483 ~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 483 LYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 88888888888 89999999999999999999999998753
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00045 Score=49.44 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=39.5
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PV-KPSAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~ 361 (468)
.+...|++++|...++.+.+. .+.+...+..+...+...+++++|.+.+++. .. +.+..++..+...+...|+++.
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHH
Confidence 333444444444444444321 1112233334444444444455555444443 11 1222344555555555555555
Q ss_pred HHHHHHHHHhhCC
Q 012234 362 GKFVCDHLFEIEP 374 (468)
Q Consensus 362 a~~~~~~~~~~~~ 374 (468)
|...+.++.+..|
T Consensus 87 a~~~~~~~~~~~~ 99 (100)
T cd00189 87 ALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHccCC
Confidence 5555555554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=62.58 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=78.3
Q ss_pred HHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHH
Q 012234 319 GVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 396 (468)
.-+.+.+++.+|+..|.+. ...| |.+.|..-..+|.+.|.++.|++-++.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999887 4555 6777888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 012234 397 DRVREQMKES 406 (468)
Q Consensus 397 ~~~~~~m~~~ 406 (468)
++.|++.++.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999887653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.011 Score=46.87 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=105.0
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC---CHHHH
Q 012234 271 IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP---SAKVW 346 (468)
Q Consensus 271 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~---~~~~~ 346 (468)
.-|+...-..|..+....|+..+|...|.+...- -+..|......+.++....+++..|...++++. .+| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3567766777888899999999999999988752 334577778888888889999999999988873 222 23444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 347 GALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
..+...+...|.+..|+..|+.+....| .+......+..+.++|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 5677889999999999999999998877 4567777888899999999888766665554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00049 Score=60.97 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=89.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh---hhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC-------C-CCCCHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAM---SGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM-------P-VKPSAK 344 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~-~~~~~~ 344 (468)
.|..|...|.-.|+++.|+...+.- .+.+|-.. ....+..+..++.-.|+++.|.+.|+.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566678888887765432 22333332 2456677888888888999988888754 1 223456
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh----C--CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEI----E--PENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
...+|...|.-..+++.|+..+.+-+.+ + ......+..|+.+|...|..++|+.+.+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6777888888888888998887765544 1 334567889999999999999998877666553
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00075 Score=54.90 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=57.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHH
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESHIKMD--LWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYM 119 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 119 (468)
+..+...+...|++++|...+++.++....+. ...+..+..++.+.|++++|...+++..+. +...+..+...+.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44444445555555555555555554432221 234455555555555555555555554431 2333444444444
Q ss_pred hcCC--------------HHHHHHHHhhCCCCCHhHHHHHHHHHHhCCC
Q 012234 120 VHGF--------------VEKAMDLFQVMKRPGLSTWNAVISGLVQNNR 154 (468)
Q Consensus 120 ~~~~--------------~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (468)
..|+ +++|.+.+++....+...|..++..+...|+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 4443 4566777776666555556666666655554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0033 Score=60.32 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++..|.++.-.....|++++|...++++.+++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455666665556666777777777777777777 45677777777777777777777777766543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=50.06 Aligned_cols=90 Identities=9% Similarity=-0.052 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012234 112 SAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS 188 (468)
Q Consensus 112 ~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 188 (468)
..+...+...|++++|.++|+.+.. .+..-|..|..++...|++.+|+..|......+ +-|...+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3344444455555555555554433 223345555666666666666666666666554 344555556666666666
Q ss_pred ChhhHHHHHHHHHH
Q 012234 189 NLKGGKEIHGYAVK 202 (468)
Q Consensus 189 ~~~~a~~~~~~~~~ 202 (468)
+.+.|++.|+.++.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=47.52 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=46.9
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 317 MVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
+...+...|++++|++.|+++ ...| +...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677888888888888877 3445 567888888888899999999999999998888764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.041 Score=49.29 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=82.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (468)
+.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-.++... +-.+.-|...+.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 45555666777788777777655543 47888888889999999999988887654 23457788889999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
|+..+|.....+ ..+..-+..|.+.|++.+|.+..-+.
T Consensus 251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999988888776 12256677889999999998875444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0014 Score=47.17 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChhhHHHHHHHHHHcCCCCchhH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGV-RPNAVTISSIFSLFSHFS--------NLKGGKEIHGYAVKNRYDRNIYV 211 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 211 (468)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-....+|+.+...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 899999999998887654 24456788999999999999999
Q ss_pred HHHHHHHHHh
Q 012234 212 ATAIIDTYAK 221 (468)
Q Consensus 212 ~~~l~~~~~~ 221 (468)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.014 Score=55.14 Aligned_cols=71 Identities=8% Similarity=0.064 Sum_probs=43.5
Q ss_pred CChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 223 GFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 223 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
|-.+-+.++-+++...+..+...+..-+.+...+.-|-++|.+|-+. ..+++.....+++++|..+-++.-
T Consensus 730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc
Confidence 33344444444444444455555555566666677777777776432 236666777888888887777665
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00063 Score=48.83 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=65.7
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhCCCC-CCCcchHHHHHHHhhccC--------ChHHHHHHHHHHHHhCCCCchHHHH
Q 012234 11 SMIAGYSQGGFYEECKALFREMLNSPVL-RPDGVTVVSVLQACGQSS--------DIVFGMEVHNFVIESHIKMDLWICN 81 (468)
Q Consensus 11 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (468)
.-|..+...+++.....+|+.++ +.|+ -|+..+|+.++.+.++.. +.-..+.+|+.|+..++.|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 34666667799999999999999 8888 899999999999876652 3456788999999999999999999
Q ss_pred HHHHHHHh
Q 012234 82 ALIGMYAK 89 (468)
Q Consensus 82 ~l~~~~~~ 89 (468)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=60.97 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccCC------CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGR------SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 282 (468)
......+++......+++.+..++.+.... ...+..+++..|...|..+.++.+++.=...|+-||..+++.||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 333444444444444555555555544431 12344566666666666666666666666666666666666666
Q ss_pred HHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHH
Q 012234 283 SACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA 315 (468)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 315 (468)
+.+.+.|++..|.++...|..+ +.-.+..++.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~ 177 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQA 177 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHh-hccCCchHHH
Confidence 6666666666666666666544 3333444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.054 Score=49.21 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHH
Q 012234 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319 (468)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 319 (468)
.+|...+.+-.+....+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-...+ +.+...-+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 467777877788888999999999999888 6778888999988766 478889999998766542 333334456677
Q ss_pred HHhccCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 320 VLSRARRISEATEFVSKMP--VKPS--AKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
-+.+.++-+.|..+|+... +..+ ..+|..++.--..-|+...+..+-+++.+..|..
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7788999999999998652 2222 5688999999999999999999999998888753
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.001 Score=61.11 Aligned_cols=111 Identities=13% Similarity=0.196 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CC-----HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012234 111 YSAIISGYMVHGFVEKAMDLFQVMKR-PG-----LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLF 184 (468)
Q Consensus 111 ~~~li~~~~~~~~~~~A~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 184 (468)
...+++.+....+++.+..++.+... |+ ..|..++++.|.+.|..++++.+++.=...|+-||..+++.++..+
T Consensus 69 ld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~f 148 (429)
T PF10037_consen 69 LDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHF 148 (429)
T ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHH
Confidence 33444444444445555555544442 11 1244567777777777777777777666677777777777777777
Q ss_pred HccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 012234 185 SHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221 (468)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (468)
.+.|++..|.++...|...+...+..++...+.++.+
T Consensus 149 l~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 149 LKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777666666655555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.013 Score=49.07 Aligned_cols=129 Identities=9% Similarity=-0.003 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHH-----HH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVAT-----AI 215 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 215 (468)
+.+.++.++.-.|.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...++.+.+..-..+....+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666667777777777777776555566666677777777778777777777666543333333222 23
Q ss_pred HHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 216 IDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 216 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
...|.-++++..|...|.++... ++..-|.-.-+..-.|+..+|++.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455566777777777666553 3344444444455567777777777777664
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.021 Score=45.27 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC-----CCcchHHH
Q 012234 171 RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-----RSLIIWTA 245 (468)
Q Consensus 171 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 245 (468)
.|+...-..|..+....|+..+|...|++....-...|......+.++....++...|...++++.+ +.+.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4444444455555555566666655555555544445555555555555555555555555555443 12233444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 012234 246 IISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
+...+...|++..|..-|+.....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 455555566666666666655553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.003 Score=47.16 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=55.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC--CchhHHHHHHHHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQASGVRPN--AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD--RNIYVATAIIDTYA 220 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 220 (468)
+..++...|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566777888888888888887775544 234555666777777777777777777664311 01122222333455
Q ss_pred hcCChHHHHHHHhhc
Q 012234 221 KTGFLHGAQRVFDRF 235 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~ 235 (468)
..|+.++|+..+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 566666666555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.11 Score=51.44 Aligned_cols=191 Identities=10% Similarity=0.052 Sum_probs=124.3
Q ss_pred HHHHHHHH--hcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 012234 9 WNSMIAGY--SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86 (468)
Q Consensus 9 y~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (468)
|...+.++ .|.|+.++|..+++... ..+ ..|..|...+-..|...+..++|..+|+...... |+......+..+
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFma 119 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALY-GLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhc-cCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHH
Confidence 45555555 57899999999998876 433 2377888888889999999999999999998875 457777778888
Q ss_pred HHhCCCHHH----HHHHHhhcCCCCeehHHHHHHHHHhcCC----------HHHHHHHHhhCCCCC-----HhHHHHHHH
Q 012234 87 YAKCGSLDY----ARALLDEMSDKDEVSYSAIISGYMVHGF----------VEKAMDLFQVMKRPG-----LSTWNAVIS 147 (468)
Q Consensus 87 ~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~~~~~~-----~~~~~~l~~ 147 (468)
|.+.+.+.+ |+++++...+ ++..+-++++.+.+.-. ..-|.+.++.+.+.+ ..-...-..
T Consensus 120 yvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 998887654 6667775543 33444444444433211 122556666665422 111222233
Q ss_pred HHHhCCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 012234 148 GLVQNNRHEAVLDLVRE-MQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 148 ~~~~~g~~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 204 (468)
.+...|++++|++++.. ..+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 45667889999888843 3333223333344455666777788888888877777766
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.014 Score=52.66 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=95.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCC-------CcchHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGR-------SLIIWTAIISAYAA---HGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 283 (468)
.++-+|....+++..+++.+.+... .+..-...+-++.+ .|+.++|+.++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555566677777777777766652 11223334445566 7888888888888655555677777776666
Q ss_pred HHhc---------cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC-h---HHHHHHH---HhC-------CCC
Q 012234 284 ACAH---------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR-I---SEATEFV---SKM-------PVK 340 (468)
Q Consensus 284 ~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~---~~A~~~~---~~~-------~~~ 340 (468)
.|-. ....++|...|.+.- .+.|+...=-.+...+...|. + .+..++- ..+ ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5422 223667777777655 344554332222222333332 1 1222222 111 133
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
.+-+.+.+++.++.-.|+.+.|.+.++++.+..|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 466777888888888999999999999998887654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0001 Score=40.97 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=30.7
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
|+++++.+|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00019 Score=47.95 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=24.4
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
..|++++|..+|+++... .+.+...+..+..+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555543 1224444445555555555555555555555
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0055 Score=49.62 Aligned_cols=63 Identities=11% Similarity=-0.016 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRP--NAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 203 (468)
.|..+...+...|++++|+..|++.......| ...++..+..++...|+.++|...++.+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555566666666777776666665442111 1234555556666666666666666666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0014 Score=56.71 Aligned_cols=93 Identities=12% Similarity=0.111 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---cchHHHHHH
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPEN---TGNYIIMAN 385 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 385 (468)
|..-+..+.+.|++++|+..|+.+. ..|+ +..+.-+...|...|++++|...|+.+.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4443444445566666666666552 2332 2355556667777777777777777777766654 334555566
Q ss_pred HHHHcCChHHHHHHHHHHHhC
Q 012234 386 LYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~ 406 (468)
++...|++++|.++++++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0023 Score=56.50 Aligned_cols=129 Identities=9% Similarity=0.125 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH-HhccCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV-LSRARRISEATEFVSKMP--VKPSAKVWGALLYG 352 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 352 (468)
.+|..+++...+.+..+.|..+|.++.+.. ..+..+|-..... |...++.+.|.++|+..- ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467888899999999999999999998542 2234455554444 333567777999999872 55678899999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENT---GNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+...|+.+.|..+|+++...-|.+. ..|...+..=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998866544 57888899999999999999999888774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0076 Score=57.90 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=101.9
Q ss_pred CCcchHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHHhhh
Q 012234 238 RSLIIWTAIISAYAA--HG---DASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHS--------GLVDKAWDIFNAMSG 303 (468)
Q Consensus 238 ~~~~~~~~l~~~~~~--~g---~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 303 (468)
.+..+|...+.+... .+ ....|..+|++..+. .|+ ...+..+..++... .+...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 566788888887543 32 377999999999985 566 44555554444322 123344444444332
Q ss_pred hcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 304 ~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
......++..|..+.......|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++..|
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 2123345677877777777789999999999988 4678888999999999999999999999999999999888544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00058 Score=45.72 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=48.4
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCC
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISG-DVELGKFVCDHLFEIEP 374 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 374 (468)
++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777777788888888777776 2334 4667788888888888 68888888888888776
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0011 Score=60.48 Aligned_cols=65 Identities=14% Similarity=0.008 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch---HHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN---YIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+...|+.+..+|...|++++|+..|+++++++|++... |..++.+|...|+.++|+..+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667777777777777777777777777777766633 677777777777777777777776664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.012 Score=49.34 Aligned_cols=180 Identities=11% Similarity=0.042 Sum_probs=88.0
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCC-CcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRP-DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNAL 83 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (468)
+....-.....+...|++.+|++.|+.+.....-.| .......++.++-+.|+++.|...++..++.-+.-...-+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 334444455566778899999999999874321111 1234556677788889999999999888876544222223322
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCC-------eehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChH
Q 012234 84 IGMYAKCGSLDYARALLDEMSDKD-------EVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHE 156 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (468)
+.+.+......... ..++| ...+..++.-|-......+|...+..+.+.=...--.+...|.+.|.+.
T Consensus 84 ~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 22222111111110 00111 1123344444444455555554444443211111223455677777777
Q ss_pred HHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChh
Q 012234 157 AVLDLVREMQASGVRPNAV----TISSIFSLFSHFSNLK 191 (468)
Q Consensus 157 ~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~ 191 (468)
.|..-++.+++. -|++. ....++.++.+.|..+
T Consensus 159 aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 159 AAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 777777777664 33332 3344555555555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.011 Score=44.27 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=63.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHH
Q 012234 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPD--PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVL 321 (468)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 321 (468)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667778888999999988888876654 34566677788888999999999888876521111 122222334566
Q ss_pred hccCChHHHHHHHHhC
Q 012234 322 SRARRISEATEFVSKM 337 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~ 337 (468)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7788888888776543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.11 Score=46.84 Aligned_cols=81 Identities=7% Similarity=-0.103 Sum_probs=46.3
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCHHHH
Q 012234 51 ACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFVEKA 127 (468)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A 127 (468)
.+.+..++..|+..+...++..+. +...|..-...+...|++++|.--.+.-.+ .....+...-+++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344566777888888888887654 455566666677777777777765544332 1222333333444444444444
Q ss_pred HHHHh
Q 012234 128 MDLFQ 132 (468)
Q Consensus 128 ~~~~~ 132 (468)
.+.|+
T Consensus 137 ~~~~~ 141 (486)
T KOG0550|consen 137 EEKLK 141 (486)
T ss_pred HHHhh
Confidence 44443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00052 Score=41.00 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
.++..+...|...|++++|++.++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999988887764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0006 Score=46.97 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEI----EPE---NTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..+++.+...|...|++++|+..++++.+. +++ -..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356777888888888888888888888765 222 244678889999999999999999887654
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0045 Score=50.53 Aligned_cols=96 Identities=10% Similarity=0.187 Sum_probs=73.3
Q ss_pred HHHhhC--CCCCHhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------------
Q 012234 129 DLFQVM--KRPGLSTWNAVISGLVQN-----NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF-------------- 187 (468)
Q Consensus 129 ~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------------- 187 (468)
..|+.. ...+-.+|..++..|.+. |..+-....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 445544 346667777777777543 77788888888888889999999999998876542
Q ss_pred --CChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 012234 188 --SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF 224 (468)
Q Consensus 188 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 224 (468)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2356688899999999999999999988888876554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.13 Score=45.98 Aligned_cols=283 Identities=14% Similarity=0.157 Sum_probs=174.7
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHhhCCC---CCHhHHHHHH--HHHHhCCChHHHHHHHHHHHHCCCCCCHHH--HHHHH
Q 012234 111 YSAIISGYM--VHGFVEKAMDLFQVMKR---PGLSTWNAVI--SGLVQNNRHEAVLDLVREMQASGVRPNAVT--ISSIF 181 (468)
Q Consensus 111 ~~~li~~~~--~~~~~~~A~~~~~~~~~---~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~l~ 181 (468)
|..|-.++. -.|+-..|.++-.+..+ .|....--|+ .+-.-.|+++.|.+-|+.|.. .|.... ...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHH
Confidence 344444433 34555666655544332 2333222233 233456888888888888875 232221 22233
Q ss_pred HHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC-----CCcc--hHHHHHHHHH---
Q 012234 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-----RSLI--IWTAIISAYA--- 251 (468)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~--- 251 (468)
-...+.|+.+.|..+-+..-... +.-.....+.+...|..|+++.|+++++.-.. ++.. .-..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 33456777777777777666543 23345666788888888999998888876543 3332 1222322211
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHH
Q 012234 252 AHGDASKAVSLFNEMLNNGIQPDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEA 330 (468)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 330 (468)
-.-+...|...-.+..+ +.||.. .-.....++.+.|+..++-.+++.+.+. .|.+..+...+ +.+.|+....
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~d 313 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALD 313 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHH
Confidence 12345555555544443 466643 2334557789999999999999999965 67766654333 4455653322
Q ss_pred H----HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 012234 331 T----EFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA-GRWDEADRVREQMKE 405 (468)
Q Consensus 331 ~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 405 (468)
. +-+..|+ +.+......+..+....|++..|..-.+.+....|. ..+|..|++.-... |+-.++...+-+..+
T Consensus 314 RlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1 2233343 335677778888999999999999988888888774 57888889887765 999999998877765
Q ss_pred C
Q 012234 406 S 406 (468)
Q Consensus 406 ~ 406 (468)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.15 Score=46.49 Aligned_cols=29 Identities=7% Similarity=-0.043 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 012234 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKN 203 (468)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 203 (468)
.+|..++....+.++...|.+.+..+.-.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 46677777777777777777766665543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.045 Score=46.03 Aligned_cols=133 Identities=8% Similarity=0.043 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHH-----
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYAC----- 316 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~----- 316 (468)
..+.++..+.-.|.+.-....+++.++...+.++.....|++.-.+.||.+.|...|+...+. .-..+..+.+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445566666667777777778888777655556677777777777888888888888866543 22222222222
Q ss_pred HHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 317 MVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
....|.-.+++.+|...+.++. .+.++...|.-.-+..-.|+..+|++..+.+++..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 2233455566777777776664 2234555555555555667777777777777777664
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.01 Score=46.71 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=72.1
Q ss_pred hccCCHHHHHHHHHHhhhhcCCC--CCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 012234 286 AHSGLVDKAWDIFNAMSGQYGIQ--PSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
...++.+.+...+.++...+.-+ |+... ..-.......++.. -..+...++..+...|+++.|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHHH
Confidence 45667777777777776543211 11111 11112222223222 1345566777888999999999
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCC
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE-----SGLAKIP 412 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 412 (468)
..++++...+|-+...|..++.+|.+.|+..+|.++|+++.+ .|+.|.+
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999999988854 3555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=58.45 Aligned_cols=252 Identities=13% Similarity=0.035 Sum_probs=143.4
Q ss_pred HHHhcCCChhHHHHHHHHhhhCCCCCCCc----chHHHHHHHhhccCChHHHHHHHHHHH--H--hCCC-CchHHHHHHH
Q 012234 14 AGYSQGGFYEECKALFREMLNSPVLRPDG----VTVVSVLQACGQSSDIVFGMEVHNFVI--E--SHIK-MDLWICNALI 84 (468)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~ 84 (468)
.-+++.|+....+.+|+... +-| .-|. ..|..+..+|...+++.+|++....=+ . .|-+ -.......|.
T Consensus 25 ERLck~gdcraGv~ff~aA~-qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAAL-QVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHH-Hhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 34688999999999999998 555 2332 335566666677778888887654321 1 1100 0112223345
Q ss_pred HHHHhCCCHHHHHHHHhhcCC-------C--CeehHHHHHHHHHhcCCH--------------------HHHHHHHhhCC
Q 012234 85 GMYAKCGSLDYARALLDEMSD-------K--DEVSYSAIISGYMVHGFV--------------------EKAMDLFQVMK 135 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~--------------------~~A~~~~~~~~ 135 (468)
+.+--.|.+++|.....+-.. + ...++..|...|...|+- +.|.++|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 555556777777655433221 1 223445555555444321 11333332211
Q ss_pred C-----CC----HhHHHHHHHHHHhCCChHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 012234 136 R-----PG----LSTWNAVISGLVQNNRHEAVLDLVREMQ----ASGVR-PNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201 (468)
Q Consensus 136 ~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (468)
+ .| -..|..|.+.|.-.|+++.|+..-+.-+ +-|-+ .....++.+.+++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 11 1245555566666778888877654432 22322 123456777788888888888888777654
Q ss_pred HcCC-----CCchhHHHHHHHHHHhcCChHHHHHHHhhccC---------CCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 202 KNRY-----DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---------RSLIIWTAIISAYAAHGDASKAVSLFNEML 267 (468)
Q Consensus 202 ~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 267 (468)
...+ ........+|.+.|.-...+++|+.++.+-.. ....++-+|..+|...|..++|+.....-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4221 22334555677777777788888877765432 123466677777777888888777665544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.16 Score=45.49 Aligned_cols=107 Identities=18% Similarity=0.114 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
.+..+.-+...|+...|.++-++.. .|+..-|...+.+++..++|++-.++-.. +-++..|..++..|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 3444455555666666665544432 35666666666677777776665554321 122355666666666
Q ss_pred ccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012234 323 RARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (468)
+.|+..+|..++.+++ + ..-+..|.+.|++.+|.+...
T Consensus 249 ~~~~~~eA~~yI~k~~--~-----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP--D-----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC--h-----HHHHHHHHHCCCHHHHHHHHH
Confidence 6666667766666642 1 233455566666666655543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0099 Score=53.18 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
.++..+..++.+.+++.+|++..++.- .++|......=..++...|+++.|+..|+++++..|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 456778888999999999999988772 456788888889999999999999999999999999999999999998888
Q ss_pred cCChHHH-HHHHHHHHhC
Q 012234 390 AGRWDEA-DRVREQMKES 406 (468)
Q Consensus 390 ~g~~~~A-~~~~~~m~~~ 406 (468)
..++.+. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7776654 7788888653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.014 Score=50.67 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=68.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC-CCC----CHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP-VKP----SAKVWG 347 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~----~~~~~~ 347 (468)
.|...+....+.|++++|...|+.+.+.+ |+ +..+..+...|...|++++|...|+.+. ..| ....+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444444455677888888888777653 33 2355567777778888888888877762 222 245555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (468)
.++..+...|+.+.|...++++.+..|++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 5667777889999999999999888887653
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0076 Score=49.23 Aligned_cols=89 Identities=15% Similarity=0.307 Sum_probs=69.1
Q ss_pred CCCcchHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------------CCHHHHH
Q 012234 237 GRSLIIWTAIISAYAA-----HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS----------------GLVDKAW 295 (468)
Q Consensus 237 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~ 295 (468)
.++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3555666777776654 366777777888999999999999999999987652 2346788
Q ss_pred HHHHHhhhhcCCCCCHhHHHHHHHHHhccCC
Q 012234 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326 (468)
Q Consensus 296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 326 (468)
+++++|... |+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 899998855 999999999999988887664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.14 Score=42.93 Aligned_cols=50 Identities=16% Similarity=0.079 Sum_probs=26.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHH
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEA 330 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A 330 (468)
+.+.|.+.|.+..|..-++.+.+.+.-.+. ......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455567777777777777777765321111 23344555666666665533
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.03 Score=41.61 Aligned_cols=141 Identities=15% Similarity=0.193 Sum_probs=89.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (468)
..-.|..++..++..+...+ .+..-+|.++--....-+-+-..+.++.+-+-+.+.|- .....++..|.+.|
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n---- 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRN---- 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhc----
Confidence 34568888888888887764 25566776776555556666666666666543332221 11223344444433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 330 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
.+....+..+.....+|+-+.-.+++..+.+.+..+|....-++.+|.+.|+..++.+++++.-+.|++
T Consensus 84 -----------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 84 -----------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344555667788899999999999999988777778999999999999999999999999999999974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.003 Score=42.73 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=49.2
Q ss_pred HHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 012234 319 GVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
..|.+.+++++|.++++.+. ..| ++..|......+...|++++|.+.++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 46778888888888888773 334 5677777888888999999999999999998887765543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0093 Score=53.33 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
..++..+..++.+.+++..|++.+.++++.+|+|...+..-+.+|...|+++.|+..|+++.+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 45677888899999999999999999999999999999999999999999999999999998754
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.022 Score=49.06 Aligned_cols=122 Identities=15% Similarity=-0.021 Sum_probs=79.8
Q ss_pred hHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC---CHHHHHHH
Q 012234 23 EECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG---SLDYARAL 99 (468)
Q Consensus 23 ~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~ 99 (468)
+....-++.-. ..+ |-|...|-.|..+|...|+.+.|...|....+..+ ++...+..+..++.... ...++..+
T Consensus 139 ~~l~a~Le~~L-~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 139 EALIARLETHL-QQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHH-HhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 34444444444 222 46777888888888888888888888888877653 36666666666655432 35677778
Q ss_pred HhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHH
Q 012234 100 LDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVIS 147 (468)
Q Consensus 100 ~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~ 147 (468)
|+++... ++.+...|...+...|++.+|...|+.|.+ |....+..+|.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 8877653 455666677778888888888888888775 33334444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.55 Score=44.66 Aligned_cols=376 Identities=12% Similarity=0.105 Sum_probs=221.4
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcc-hHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGV-TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
..|+.||.--......+.+..++..++.+ -|-.. -|......=.+.|..+.+.++|++.+.. ++.+...|.....
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 45666666555555667777777777733 24443 4555555567778888888898888765 4456666665544
Q ss_pred HH-HhCCCHHHHHHHHhhcCC------CCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHH---hC---
Q 012234 86 MY-AKCGSLDYARALLDEMSD------KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLV---QN--- 152 (468)
Q Consensus 86 ~~-~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~--- 152 (468)
.+ ...|+.+...+.|+.... .+...|...|.--..++++.....++++..+-....|+..-.-|. +.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCCh
Confidence 33 346777777777777654 245567777777777888888888888877633333333322221 11
Q ss_pred ---CChHHHHHHHHHHHH--------------------CCCCCCHHH--HHHHHH-------HHHccCChhhHHHHHHHH
Q 012234 153 ---NRHEAVLDLVREMQA--------------------SGVRPNAVT--ISSIFS-------LFSHFSNLKGGKEIHGYA 200 (468)
Q Consensus 153 ---g~~~~a~~~~~~m~~--------------------~~~~p~~~~--~~~l~~-------~~~~~~~~~~a~~~~~~~ 200 (468)
...+++.++-..... .+.+.+..+ .+.+.. .+.........+..++.-
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh
Confidence 122333322222111 000001001 111111 111111122222222222
Q ss_pred HHcC---C----CCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012234 201 VKNR---Y----DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS---LIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270 (468)
Q Consensus 201 ~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 270 (468)
++.. + +++..++...+..-...|+.+.+.-+|+...-+= ...|-..+.-....|+.+-|..++....+--
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 2211 1 1234566777777788999999999998876542 2345555555555689888888887765543
Q ss_pred CC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH-hHHHHHHHHHhccCChHHHH---HHHHhCC-CCCCH
Q 012234 271 IQ--PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV-EHYACMVGVLSRARRISEAT---EFVSKMP-VKPSA 343 (468)
Q Consensus 271 ~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~---~~~~~~~-~~~~~ 343 (468)
++ |....+.+. .+-..|++..|..+++.+.++ . |+. ..-..-+....+.|..+.+. +++.... .+-+.
T Consensus 362 ~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~ 436 (577)
T KOG1258|consen 362 VKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN 436 (577)
T ss_pred CCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc
Confidence 33 333333333 345578999999999999875 3 543 22233345566788888887 5554442 22233
Q ss_pred HHHHHHHH-----HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 344 KVWGALLY-----GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 344 ~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
.+...+.- .+.-.++.+.|..++.++.+..|++...|..+++.....+
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 33333222 2344788999999999999999999999999998887766
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.052 Score=41.52 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=60.5
Q ss_pred HHHHHhccCChHHHHHHHHhCC----C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch-HHHHHHH--HH
Q 012234 317 MVGVLSRARRISEATEFVSKMP----V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN-YIIMANL--YS 388 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~--~~ 388 (468)
-.....+.|++++|.+.|+.+. . +-....-..++.++.+.|+++.|...+++.++++|.++.+ |.....+ +.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444566778888888887773 1 1234566778889999999999999999999998887654 3333333 33
Q ss_pred HcCC---------------hHHHHHHHHHHHhC
Q 012234 389 QAGR---------------WDEADRVREQMKES 406 (468)
Q Consensus 389 ~~g~---------------~~~A~~~~~~m~~~ 406 (468)
.... ..+|..-|+++++.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 3333 55666666666653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.016 Score=39.79 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCC
Q 012234 78 WICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNR 154 (468)
Q Consensus 78 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~ 154 (468)
.+++.+..+|...|++++|+..|+ +|+++.+.... ++ ..+++.+..++...|+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~------------------------~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYE------------------------KALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH------------------------HHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH------------------------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 456777777777777777777765 33444444433 22 3467888888888888
Q ss_pred hHHHHHHHHHHHH
Q 012234 155 HEAVLDLVREMQA 167 (468)
Q Consensus 155 ~~~a~~~~~~m~~ 167 (468)
+++|++.+++..+
T Consensus 62 ~~~A~~~~~~al~ 74 (78)
T PF13424_consen 62 YEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887653
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.75 Score=44.94 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (468)
+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+... .+.-|.-.+..|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHH
Confidence 45555666777888888887776653 5677777777888888888877665544432 245566678888
Q ss_pred hccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012234 322 SRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCD 367 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (468)
.+.|+.++|.+++.+.+..+ -...+|.+.|++.+|.+..-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 88888888888888874222 45667777788777766543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.044 Score=41.44 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 269 NGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 269 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
....|+..+..+++.+|+..|++..|.++++...+.++++-+..+|..|+.-..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 346688888888888888888888888888888888887777788888776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.14 Score=48.26 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=77.6
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Q 012234 18 QGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97 (468)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 97 (468)
-+|+++++.+..+.-.--..+| ....+.+++.+-+.|..+.|+++. .|+. .-.....+.|+++.|.
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-HHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCCHHHHH
Confidence 3566666655555111011121 333566666666677777776652 1221 2344455677777777
Q ss_pred HHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 012234 98 ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI 177 (468)
Q Consensus 98 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 177 (468)
++.++.. +...|..|.....+.|+++-|++.|.+... |..|+-.|.-.|+.+...++.+.....| -+
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~ 405 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG------DI 405 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------H
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc------CH
Confidence 6655444 444677777777777777777777766653 4555556666666666666665555544 13
Q ss_pred HHHHHHHHccCChhhHHHHH
Q 012234 178 SSIFSLFSHFSNLKGGKEIH 197 (468)
Q Consensus 178 ~~l~~~~~~~~~~~~a~~~~ 197 (468)
+....++.-.|+.++..+++
T Consensus 406 n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 406 NIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 44444444555555554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.65 Score=41.75 Aligned_cols=112 Identities=15% Similarity=0.092 Sum_probs=54.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHhCCCHHHHHHHHhhcCC-CC--eehHHHHHHHHHhcCCHHHHHH
Q 012234 55 SSDIVFGMEVHNFVIESHIKMDLWICNALIG--MYAKCGSLDYARALLDEMSD-KD--EVSYSAIISGYMVHGFVEKAMD 129 (468)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~~~~~~A~~ 129 (468)
.||-..|.+.-.+..+. +..|..-+..++. +-.-.|+.+.|.+-|+.|.. |. ..-...|.-..-+.|..+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 35555555554433221 2223322222322 22335667777777766654 21 1112223333345566666655
Q ss_pred HHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012234 130 LFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 130 ~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
.-+..-. |. ...+.+.+...+..|+|+.|+++++.-.+
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 5554432 22 23556666666667777777776666544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.29 Score=46.79 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=103.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhhhhcCCCCCHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNG-IQPDP-----VTFTAVLSACA----HSGLVDKAWDIFNAMSGQYGIQPSVE 312 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~ 312 (468)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|...+..++ ...+.+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3444444555566666666665554421 11111 12333333332 245678889999998865 46665
Q ss_pred HHHHH-HHHHhccCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH-H
Q 012234 313 HYACM-VGVLSRARRISEATEFVSKMPV------KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM-A 384 (468)
Q Consensus 313 ~~~~l-~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~ 384 (468)
.|... .+.+...|++++|++.|++... ......+--+...+...+++++|...+.++.+.+.-+..+|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 4566778899999999987531 11234555667778889999999999999998876666666554 4
Q ss_pred HHHHHcCCh-------HHHHHHHHHHHhC
Q 012234 385 NLYSQAGRW-------DEADRVREQMKES 406 (468)
Q Consensus 385 ~~~~~~g~~-------~~A~~~~~~m~~~ 406 (468)
-++...|+. ++|.+++++....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 556667888 8888888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.74 Score=41.95 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 012234 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
.+-..+..++.++.-.|+.++|.+..+++.+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 4556667777777778888888888888774
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.57 Score=40.54 Aligned_cols=145 Identities=16% Similarity=0.147 Sum_probs=71.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChH
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 328 (468)
.....|++.+|..+|+...... +-+......+..+|...|+.+.|..++..+-.+ --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 3455566666666666665542 222344445666666666666666666665432 00111111112233333333333
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCcchHHHHHHHHHHcCChHH
Q 012234 329 EATEFVSKMPVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRWDE 395 (468)
Q Consensus 329 ~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 395 (468)
+...+-++....| |...-..+...+...|+.+.|.+.+-.+++.+ -.+..+-..|+..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 3333333333234 44555555666666666666666555555542 3345555566666655554443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.089 Score=39.79 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=48.2
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhh--------------CCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLN--------------SPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIE 70 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (468)
|..++..+|-++++.|+.+....+++..-. .....|+.....+++.+++..+++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456788999999999999999988876531 112334444455555555555555555555554433
Q ss_pred h-CCCCchHHHHHHHHH
Q 012234 71 S-HIKMDLWICNALIGM 86 (468)
Q Consensus 71 ~-~~~~~~~~~~~l~~~ 86 (468)
. +++.+..+|..|+..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 2 333344445444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.076 Score=48.98 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
|+.....+..+....++++.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5555555555555556666666666666666666666666666666666666666666665443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.071 Score=47.04 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=64.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCC--CC--CHhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC-----H
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGI--QP--SVEHYACMVGVLSRARRISEATEFVSKM-------PVKPS-----A 343 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~-----~ 343 (468)
.+..++...+.++++++.|+...+--.- .| ...++-.|...|.+..++++|.-+..+. ..+.- .
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3445555556666666666655431110 11 2345556666666666666655444433 11111 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEIE------PENTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
.....+.-++...|....|.+..+++.++. +........+++.|...|+.+.|+.-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222334455666777777777666665541 222334456667777777766666555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.046 Score=50.24 Aligned_cols=63 Identities=8% Similarity=-0.014 Sum_probs=43.0
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKM-PVKPSA----KVWGALLYGASISGDVELGKFVCDHLFEI 372 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 372 (468)
+...++.+..+|...|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666777777777777777777664 455552 34777777777777777777777777775
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.083 Score=41.51 Aligned_cols=70 Identities=7% Similarity=0.008 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHH-----cCCCCchhHH
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-----NRYDRNIYVA 212 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 212 (468)
...++..+...|++++|+.+.+.+.... +.+...+..++.++...|+...|.+.|..+.+ .|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4445556666777777777777766653 44556666777777777777777776666543 3666665443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.096 Score=38.94 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=69.4
Q ss_pred HHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCc---chHHHHHHHHHHcCC
Q 012234 319 GVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE-PENT---GNYIIMANLYSQAGR 392 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~g~ 392 (468)
-++...|+.+.|++.|.+.- .+.....||.-..++.-+|+.++|..-+.+++++. +... ..|..-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 34667788888888887762 34467888888888989999999999998888884 3322 246667778888899
Q ss_pred hHHHHHHHHHHHhCCC
Q 012234 393 WDEADRVREQMKESGL 408 (468)
Q Consensus 393 ~~~A~~~~~~m~~~~~ 408 (468)
-+.|..=|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999988888877775
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.9 Score=42.03 Aligned_cols=128 Identities=8% Similarity=-0.052 Sum_probs=77.7
Q ss_pred CCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhCCCHHHHH
Q 012234 19 GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES-HIKMDLWICNALIGMYAKCGSLDYAR 97 (468)
Q Consensus 19 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 97 (468)
-|++++|+++|-+|- +.. ..+....+.||+-.+.++++.--.. .-+.-...++.+...++....+++|.
T Consensus 747 ~g~feeaek~yld~d-rrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDAD-RRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccc-hhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999998886 322 3455666778887777665431000 00112346777777777777888888
Q ss_pred HHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHH
Q 012234 98 ALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 98 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (468)
+.|..-.. -...+.++.+...+++-+.+-+.+++ +....-.+..++...|.-++|.+.+
T Consensus 817 ~yY~~~~~-----~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 817 KYYSYCGD-----TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHhccc-----hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 87765432 12345556666666666666665553 3344455566666666666666655
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.91 Score=42.92 Aligned_cols=157 Identities=8% Similarity=0.042 Sum_probs=101.4
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHH
Q 012234 52 CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF 131 (468)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 131 (468)
..-.++++.+.+....-.-. +.....-.+.++..+.+.|..+.|+++... + ..-.....+.|+++.|.++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHH
Confidence 34567888876665411101 112245578899999999999999987542 1 23344567899999999988
Q ss_pred hhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhH
Q 012234 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211 (468)
Q Consensus 132 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 211 (468)
++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|...|+.+...++.+.....|-
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------ 404 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------ 404 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------
Confidence 8764 677999999999999999999999987542 56666778888888888888877776651
Q ss_pred HHHHHHHHHhcCChHHHHHHHhh
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDR 234 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~ 234 (468)
++....++.-.|+.++..+++.+
T Consensus 405 ~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444455556776666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.9 Score=38.13 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=47.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCcchHH
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP-------VKPSA-KVWGALLYGASISGDVELGKFVCDHLFEI----EPENTGNYI 381 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ 381 (468)
+......+.+...+++|-..+.+-. ..++. ..+...|-.+....++..|+..++...+. .|.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 4444555666666666665554432 12222 23444455555566777777777765544 355666666
Q ss_pred HHHHHHHHcCChHHHHHH
Q 012234 382 IMANLYSQAGRWDEADRV 399 (468)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~ 399 (468)
.|+.+| ..|+.+++..+
T Consensus 233 nLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHh-ccCCHHHHHHH
Confidence 666665 44666665554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.1 Score=44.48 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=51.7
Q ss_pred ccCChHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CcchHHHHHHHHHHcCC
Q 012234 323 RARRISEATEFVSKMP-------VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE---NTGNYIIMANLYSQAGR 392 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 392 (468)
+.|++.+|...|.... ..|+. +.-|..++...|+++.|..+|..+.+..|. -|.++.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3444666665555441 22233 333666777777777777777777776544 34557777777777777
Q ss_pred hHHHHHHHHHHHhC
Q 012234 393 WDEADRVREQMKES 406 (468)
Q Consensus 393 ~~~A~~~~~~m~~~ 406 (468)
.++|..+|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777664
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.036 Score=30.55 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777777777777777777777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.34 Score=42.47 Aligned_cols=143 Identities=15% Similarity=0.055 Sum_probs=69.0
Q ss_pred cCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHH
Q 012234 222 TGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV----TFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a 294 (468)
.|+..+|-..++++.+ .|..+++..=.+|...|+...-...+++.... ..||.. .-..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555544 23445555555666666666666666555443 223322 222233344455666666
Q ss_pred HHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCChHHHHHHHH
Q 012234 295 WDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMPVKPS------AKVWGALLYGASISGDVELGKFVCD 367 (468)
Q Consensus 295 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 367 (468)
++.-++..+ +.| |.-.-..+...+...|++.++.++..+-....+ ...|-...-.+...+.++.|+++|+
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 666655552 222 333444455555566666666666655431111 1112222223334456666666664
Q ss_pred H
Q 012234 368 H 368 (468)
Q Consensus 368 ~ 368 (468)
+
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.59 Score=35.87 Aligned_cols=116 Identities=11% Similarity=0.026 Sum_probs=64.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc
Q 012234 246 IISAYAAHGDASKAVSLFNEMLNNGI--QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323 (468)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (468)
-.....+.|++++|.+.|+.+...-. +-....-..++.++.+.++++.|...+++.++.+.-.|++ -|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence 34445667777777777777766411 1123455567777777777777777777777654333432 23333444333
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 324 ARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
....+..+.-+- ..+- ..+....|..-|+++++..|++.
T Consensus 95 ~~~~~~~~~~~~--~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEGSLQSFF--RSDR-------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhhHHhhhc--cccc-------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 222221111111 1111 12235678888888888888765
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.21 Score=42.61 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM----PVKP-SAKVWGALL 350 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-~~~~~~~l~ 350 (468)
.|+.-+.. .+.|++..|...|...++.+.-.+ ....+--|..++...|++++|..+|..+ +..| -+..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34444433 334556666666666665321100 1222333556666666666666666554 1112 245556666
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
....+.|+.++|...|+++.+..|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 66677777777777777777777765544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.073 Score=45.29 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=77.5
Q ss_pred CCCcchHHHHHHHHhc-----CCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhcc----------------CChHHH
Q 012234 3 KRDIVSWNSMIAGYSQ-----GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS----------------SDIVFG 61 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a 61 (468)
++|-.+|-..+..|.. .+..+-....++.|. +.|+..|..+|+.|+..+-+. ..-+.+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 5677788888888754 366777788888998 999999999999999886543 233568
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCC-HHHHHHHHhhcC
Q 012234 62 MEVHNFVIESHIKMDLWICNALIGMYAKCGS-LDYARALLDEMS 104 (468)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 104 (468)
.+++++|...|+.||..+-..|++++.+.+. ..+..++.-.|.
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 8999999999999999999999999988775 334444444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.034 Score=30.71 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
.+|..+...+...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45667777777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.85 Score=35.42 Aligned_cols=45 Identities=7% Similarity=0.109 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhcc
Q 012234 9 WNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQS 55 (468)
Q Consensus 9 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 55 (468)
-..++..+...+.+......++.+. ..+ +.+...++.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~-~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESAL-KLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH-ccC-ccchhHHHHHHHHHHHH
Confidence 3455666665566666666666665 333 24444555566555543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.3 Score=41.27 Aligned_cols=143 Identities=11% Similarity=0.107 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhc---------cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhcc
Q 012234 256 ASKAVSLFNEMLN-NGIQPD-PVTFTAVLSACAH---------SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324 (468)
Q Consensus 256 ~~~a~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 324 (468)
.+.|+.+|.+... +.+.|+ ...|..+..++.. ..+..+|.++-++..+. -+.|+.....+..+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 5678888888872 234555 3344433333221 23455667777777642 234677777777777888
Q ss_pred CChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch--HHHHHHHHHHcCChHHHHHHH
Q 012234 325 RRISEATEFVSKMP-VKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN--YIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 325 ~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 400 (468)
++++.|..+|++.. ..|| ..+|......+.-.|+.++|.+.++++.+++|....+ ....++.|+.. ..++|++++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 88999999999984 5665 6677777888889999999999999999999975443 22334455554 677888876
Q ss_pred H
Q 012234 401 E 401 (468)
Q Consensus 401 ~ 401 (468)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.3 Score=38.41 Aligned_cols=81 Identities=14% Similarity=-0.009 Sum_probs=32.6
Q ss_pred hcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
..|++++|..+|+-+.- .+..-|..|..++...+++++|+..|......+. -|+..+.....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 34444444444443322 1222333344444444444444444443333211 1222233344444444444444444
Q ss_pred HHHhh
Q 012234 298 FNAMS 302 (468)
Q Consensus 298 ~~~~~ 302 (468)
|....
T Consensus 128 f~~a~ 132 (165)
T PRK15331 128 FELVN 132 (165)
T ss_pred HHHHH
Confidence 44444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.40 E-value=2.4 Score=39.77 Aligned_cols=59 Identities=8% Similarity=0.088 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
..+..+..+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33445555667777777777766543211 122344556666666677776666666643
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.39 E-value=2.2 Score=39.32 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcC-CCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYG-IQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVW-GALLYG 352 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~-~~l~~~ 352 (468)
..|...+....+..-++.|..+|-++.+. + +.+++..+++++..++ .|+..-|..+|+-- ..-||...| +..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45666777777777888888999888876 5 5677788888887665 46677777777643 344554433 455666
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCC--cchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 353 ASISGDVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+...++-+.|..+|+..++.-..+ ..+|..++.--..-|+...+..+=++|.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 777888888888888766653322 4567777777777777776666555553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.27 E-value=2.4 Score=39.03 Aligned_cols=148 Identities=11% Similarity=0.025 Sum_probs=77.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC--HhHH
Q 012234 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP---DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS--VEHY 314 (468)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~ 314 (468)
..+|..++..+.+.|.++.|...+..+...+..+ .+.....-+......|+..+|...++...+. .+... ....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~ 224 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccH
Confidence 3467777778888888888888887776643111 2233333455566677888888877777652 11111 1111
Q ss_pred HHHHHHHhccCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 315 ACMVGVLSRARRISEATEF-VSKMPVKPSAKVWGALLYGASIS------GDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
..+...+.. ..+..... ........-..++..+..-+... ++.+++...|..+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 00000000012222233333333 7788899999999999998888888887776
Q ss_pred HHc
Q 012234 388 SQA 390 (468)
Q Consensus 388 ~~~ 390 (468)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.6 Score=36.91 Aligned_cols=162 Identities=20% Similarity=0.192 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhhhhcCC--CCCHhHHHHHHH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS-ACAHSGLVDKAWDIFNAMSGQYGI--QPSVEHYACMVG 319 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~ 319 (468)
+......+...+++..+...+.........+. ........ .+...|+++.+...+.+.... .. ......+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhh
Confidence 33333444444445555555555444322211 11111111 445555555555555555321 10 011222222233
Q ss_pred HHhccCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHH
Q 012234 320 VLSRARRISEATEFVSKMP-VKP--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 396 (468)
.+...++.+.+...+.+.. ..+ ....+..+...+...++++.+...+.......|.....+..+...+...|.++++
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 3444555555555555542 122 2445555555566666666666666666666655444455555555555556666
Q ss_pred HHHHHHHHhC
Q 012234 397 DRVREQMKES 406 (468)
Q Consensus 397 ~~~~~~m~~~ 406 (468)
...+.+....
T Consensus 256 ~~~~~~~~~~ 265 (291)
T COG0457 256 LEALEKALEL 265 (291)
T ss_pred HHHHHHHHHh
Confidence 6666555443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.8 Score=36.84 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=77.9
Q ss_pred hccCChHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--C--CeehHHHHHHHHHh------
Q 012234 53 GQSSDIVFGMEVHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDEMSD--K--DEVSYSAIISGYMV------ 120 (468)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~------ 120 (468)
.+.|++++|.+.|+.+....+ +....+.-.++.++-+.++++.|+..+++... | .-..|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 355666666666666654431 11233444455555566666666666655543 1 12223333333221
Q ss_pred -cCCHHHHHHHHhhCC---C--CCH------hH-----------H-HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--
Q 012234 121 -HGFVEKAMDLFQVMK---R--PGL------ST-----------W-NAVISGLVQNNRHEAVLDLVREMQASGVRPNA-- 174 (468)
Q Consensus 121 -~~~~~~A~~~~~~~~---~--~~~------~~-----------~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-- 174 (468)
..+...+...|..+. + ||+ .. + ..+.+.|.+.|.+..|..-++.|++. .+-+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~ 203 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAV 203 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccch
Confidence 122233333333332 2 332 11 1 23456788889999999999998886 22222
Q ss_pred -HHHHHHHHHHHccCChhhHHHHHHHHHH
Q 012234 175 -VTISSIFSLFSHFSNLKGGKEIHGYAVK 202 (468)
Q Consensus 175 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 202 (468)
..+-.+..+|...|-.++|...-.-+..
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 2445566777777777777766554443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.09 E-value=1 Score=33.82 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=67.8
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CeehHHHHHHHHHhcCCHHHHHHHHh
Q 012234 54 QSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYMVHGFVEKAMDLFQ 132 (468)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~ 132 (468)
-.|..++..++..+..... +..-+|-+|--....-+-+-..++++.+-+- |. ...|+.......+-
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi----------s~C~NlKrVi~C~~ 80 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI----------SKCGNLKRVIECYA 80 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G----------GG-S-THHHHHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------hhhcchHHHHHHHH
Confidence 3466666666666665543 3333443333333333444444444433221 11 11223333333332
Q ss_pred hCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 012234 133 VMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205 (468)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 205 (468)
.+. .+....+.-+.....+|+-+.-.+++..+...+ .+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 81 ~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 81 KRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred Hhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 222 233344555667777888888888887776533 66777777778888888888888888877777764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.61 Score=41.46 Aligned_cols=162 Identities=10% Similarity=0.041 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC-----CCchhH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQAS-GVRP---NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY-----DRNIYV 211 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 211 (468)
.|-.+.+++-+.-++.+++.+-+.-... |..| ......++..++...+.++++.+.|+.+.+... -....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555555555554443322 2122 111223344555566666666666666554211 123356
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccC-------CCcc------hHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKG-------RSLI------IWTAIISAYAAHGDASKAVSLFNEMLN----NGIQPD 274 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~ 274 (468)
+..|...|.+..++++|.-+..+..+ .|.. +.-.|.-++...|....|.+.-++..+ .|-+|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 66777777777777776655444322 2221 223344566677777777777666543 343332
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 275 -PVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 275 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
......+.+.|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3445567777888888888887777654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.17 Score=40.86 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=32.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
..++.+.+.++.|+.-+.++++++|....+...-+.+|.+..++++|++=|+++...
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 344455555556666666666666555555555555566665666666555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.3 Score=42.54 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=94.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhC-CCC-----chHHHHHHHHHHHh----CCCHHHHHHHHhhcCC--CCeehHH
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESH-IKM-----DLWICNALIGMYAK----CGSLDYARALLDEMSD--KDEVSYS 112 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~ 112 (468)
+..++....-.||-+.+++.+....+.+ +.- -.-.|+..+..+.. ..+.+.|.++++.+.+ |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4455566666677777777777665532 111 11234444443333 4467778888887776 5544443
Q ss_pred HH-HHHHHhcCCHHHHHHHHhhCCC-----C--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 012234 113 AI-ISGYMVHGFVEKAMDLFQVMKR-----P--GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFS-L 183 (468)
Q Consensus 113 ~l-i~~~~~~~~~~~A~~~~~~~~~-----~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-~ 183 (468)
.. .+.+...|++++|++.|+.... + ....+--+.-.+.-..+|++|...|..+.+.. ..+..+|.-+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 33 3445667888888888886543 1 11234445556777888999999998888753 334445544433 3
Q ss_pred HHccCCh-------hhHHHHHHHHHH
Q 012234 184 FSHFSNL-------KGGKEIHGYAVK 202 (468)
Q Consensus 184 ~~~~~~~-------~~a~~~~~~~~~ 202 (468)
+...|+. ++|..++.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3556666 778888877655
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.3 Score=34.37 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=74.0
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCC
Q 012234 44 TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGF 123 (468)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 123 (468)
....++..+...+........++.+...+. .+...++.++..|++.+ ..+....++. ..+.......++.|.+.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 345677777777889999999999988874 68888999999998764 3444555552 2334445556777777777
Q ss_pred HHHHHHHHhhCCCCCHhHHHHHHHHHHhC-CChHHHHHHHHH
Q 012234 124 VEKAMDLFQVMKRPGLSTWNAVISGLVQN-NRHEAVLDLVRE 164 (468)
Q Consensus 124 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 164 (468)
++++.-++.++.. |...+..+... ++++.|.+++.+
T Consensus 85 ~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 85 YEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 7777777766643 22233333333 666666666654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.75 Score=36.34 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=19.2
Q ss_pred cCChHHHHHHHhhccCCCcchHHHHH-----HHHHHcCChHHHHHHHHHHH
Q 012234 222 TGFLHGAQRVFDRFKGRSLIIWTAII-----SAYAAHGDASKAVSLFNEML 267 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~m~ 267 (468)
.+..++|+.-|..+.+.+.-.|..|. ....+.|+...|...|++.-
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 34444444444444443333332221 12334444444444444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.059 Score=30.30 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 379 NYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788899999999999999988854
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.34 Score=42.48 Aligned_cols=160 Identities=12% Similarity=0.026 Sum_probs=120.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHH----HHHHHHhccCC
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA----CMVGVLSRARR 326 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~ 326 (468)
...|+..+|-..++++.+. .+.|...+...=++|...|+...-...++++.- ...|+...|. .+..++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4568888888889998876 466777888888899999999999999998874 3356654443 44455678999
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CcchHHHHHHHHHHcCChHHHHHHH
Q 012234 327 ISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE----NTGNYIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 327 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 400 (468)
+++|++.-++.- .+.|.....++...+--.|+.+++.++..+-...-.. -...|...+-.+...+.++.|.++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998873 3447788888888899999999999988765443221 1224667777888889999999999
Q ss_pred HHHHhCCCCCCCc
Q 012234 401 EQMKESGLAKIPG 413 (468)
Q Consensus 401 ~~m~~~~~~~~~~ 413 (468)
+.=+-..+.++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8776655555444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.35 Score=41.34 Aligned_cols=107 Identities=8% Similarity=0.172 Sum_probs=73.7
Q ss_pred HHHhhCC--CCCHhHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-------------
Q 012234 129 DLFQVMK--RPGLSTWNAVISGLVQ-----NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS------------- 188 (468)
Q Consensus 129 ~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------- 188 (468)
..|.... +.|-.+|-..+..+.. .+..+-....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 3555566666655533 3566777777888888888888888888887765432
Q ss_pred ---ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh-HHHHHHHhhc
Q 012234 189 ---NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFL-HGAQRVFDRF 235 (468)
Q Consensus 189 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 235 (468)
+-+-+..++++|...|+-||..+-..|++++.+.+-. .+..++.-.|
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 3455788999999999999999999999998877643 3333443333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.18 Score=43.80 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..++..++..+...|+++.+.+.+++....+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566777777788888888888888888888888888888888888888888888877765
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.059 Score=42.20 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=50.7
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHH
Q 012234 47 SVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEK 126 (468)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 126 (468)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .....++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34556666667777777777777666555667777777777777766666666663222 333445555555555555
Q ss_pred HHHHHhhCC
Q 012234 127 AMDLFQVMK 135 (468)
Q Consensus 127 A~~~~~~~~ 135 (468)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 555555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=2.1 Score=36.44 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=45.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcch---HHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 349 LLYGASISGDVELGKFVCDHLFEIEPENTGN---YIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
+..-|.+.|.+..|..-++.+++.-|+.+.+ +..+..+|.+.|-.++|...-+-+ ..+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl-~~N~ 234 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL-GANY 234 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH-HhcC
Confidence 4567889999999999999999987665554 556677899999999998875544 4444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.7 Score=37.25 Aligned_cols=119 Identities=12% Similarity=0.026 Sum_probs=65.3
Q ss_pred hcCCChhHHHHHHHHhhhCC-CCCCCcc------hHHHHHHHhhccC-ChHHHHHHHHHHHHh----C----CCCc----
Q 012234 17 SQGGFYEECKALFREMLNSP-VLRPDGV------TVVSVLQACGQSS-DIVFGMEVHNFVIES----H----IKMD---- 76 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~-~~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~---- 76 (468)
.++|+.+.|...+.+..... ...|+.. .|+.-.. ....+ +++.|..++++..+. + ..|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46799999999999987433 2233322 1222222 33445 888887777776544 1 1222
Q ss_pred -hHHHHHHHHHHHhCCCHHH---HHHHHhhcCC--CC-eehHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 012234 77 -LWICNALIGMYAKCGSLDY---ARALLDEMSD--KD-EVSYSAIISGYMVHGFVEKAMDLFQVMKR 136 (468)
Q Consensus 77 -~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 136 (468)
..++..++.+|...+..+. |.++++.+.. ++ +..+..-+..+.+.++.+++.+.+.+|..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 2355666777776665443 3444444422 22 33444445555555666666666666553
|
It is also involved in sporulation []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.1 Score=37.07 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 346 WGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++.....|...|.+.+|.++.++++..+|-+...+..|+..|...|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556788999999999999999999999999999999999999998888888877754
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.5 Score=35.00 Aligned_cols=132 Identities=10% Similarity=0.114 Sum_probs=69.6
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcC--CHHHHHHHHhhCCCCCHhH
Q 012234 64 VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHG--FVEKAMDLFQVMKRPGLST 141 (468)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~ 141 (468)
.+..+.+.+++|+...+..+++.+.+.|++.....++.--.-+|.......+-.+.... -..-|.+++.++. ..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~ 91 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TA 91 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hh
Confidence 33444455566666666666666666666666555554333333332222222221111 1233455555543 23
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 203 (468)
+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++...+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555666777778888887777664322 1122244566666677766666666665554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.3 Score=38.12 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIE----PENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
....+|..++..+.+.|.++.|...+.++...+ +..+.+...-+..+...|+..+|+..++......+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 346788899999999999999999999988865 225677888899999999999999999988884443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.3 Score=35.90 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc---chHHHHHH-H
Q 012234 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKN-RYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL---IIWTAIIS-A 249 (468)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~-~ 249 (468)
..+......+...+....+...+...... ........+......+...+++..+...+......+. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444555555555555555555554432 2233334444455555566666667766666554211 22233333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCC
Q 012234 250 YAAHGDASKAVSLFNEMLNNGI--QPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARR 326 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 326 (468)
+...|+++.|...+.+...... ......+......+...++.+.+...+...... ... ....+..+...+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 7788888888888888755211 112334444444466778899999999888753 233 35677778888888888
Q ss_pred hHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 327 ISEATEFVSKMP-VKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 327 ~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
++.|...+.... ..|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999998888773 3444 455555556656777899999999999888876
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.55 E-value=2.1 Score=42.60 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=85.7
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCC
Q 012234 178 SSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI--YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255 (468)
Q Consensus 178 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (468)
..-+....+...++.|..+-+ ..+..++. .......+-+.+.|++++|...|-+....-- -.-++.-|....+
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHHH
Confidence 334444555555555554432 22222221 2223333444556777777666654432110 1223444444555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCC-CCHhHHHHHHHHHhccCChHHHHHHH
Q 012234 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ-PSVEHYACMVGVLSRARRISEATEFV 334 (468)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~ 334 (468)
..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-..+.+..- . |.- -| ....+..+.+.+-.++|..+-
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHHhChHHHHHHHH
Confidence 55566666666666654 33344456677777777666555554433 1 211 12 223445555556666666655
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 335 SKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
.+... +......++ -..|++++|.+.++.
T Consensus 487 ~k~~~--he~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 487 TKFKK--HEWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred HHhcc--CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence 55532 333333332 345677777776654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.53 E-value=4.7 Score=38.73 Aligned_cols=128 Identities=13% Similarity=0.064 Sum_probs=90.7
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK---DEVSYSAIIS 116 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 116 (468)
.+...|..++.---...+.+.+..++..++..- +.--..|......=.+.|..+.+.++|++-... +...|...+.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344456666665555556677777787777653 223335666666667889999999999987763 4555665555
Q ss_pred HHH-hcCCHHHHHHHHhhCCC------CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 012234 117 GYM-VHGFVEKAMDLFQVMKR------PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168 (468)
Q Consensus 117 ~~~-~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 168 (468)
-+. ..|+.+...+.|+.... .+...|...|..-..++++.....++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 443 56788888888887764 44557888888888899999999999998864
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.6 Score=35.58 Aligned_cols=203 Identities=13% Similarity=0.061 Sum_probs=103.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (468)
|..-..+|....++++|...+.+..+. ...+...|. ....+++|.-+.+++.+. +--...++.....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445666677777777666655421 111111111 112223333333333332 1122344555666777
Q ss_pred cCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccCCHHHHHH
Q 012234 222 TGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNN---GI--QPDPVTFTAVLSACAHSGLVDKAWD 296 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~ 296 (468)
+|..+.|-..+++.-+ ...+-++++|+++|++...- +- +--...+..+-+.+.+...+++|-.
T Consensus 104 ~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred hCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 7776666555544321 12334566666666654321 10 0011223344455666666766655
Q ss_pred HHHHhhhh---cCCCCCH-hHHHHHHHHHhccCChHHHHHHHHhC---C---CCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 297 IFNAMSGQ---YGIQPSV-EHYACMVGVLSRARRISEATEFVSKM---P---VKPSAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 297 ~~~~~~~~---~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
.+.+...- ..--++. ..|-..|-.+.-..++..|.+.++.- + ...+..+...|+.+| ..|+.+++..++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 55443210 0111221 23455556667778999999999883 3 223466777788776 667888777665
Q ss_pred H
Q 012234 367 D 367 (468)
Q Consensus 367 ~ 367 (468)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 3
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=6.2 Score=39.56 Aligned_cols=117 Identities=15% Similarity=0.025 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCH--hHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQPSV--EHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDVELGKFV 365 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 365 (468)
.+.+.|...+.......++.+.. ..+..+.......+...+|...++... ...+......-+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 45577777777765443443332 223333333333333567777777653 222444444445555577788877777
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+..+-...........-+++++...|+.++|...|+++..
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7776554444566777788887778888888888877643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.36 E-value=7.8 Score=40.55 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLV 291 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (468)
+.-.++.-.+.|.+++|+.++..=.+.--..|.+....+.....+++|.-.|+..-+ ..-.+.+|..+|++
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 334444455566666666665533333334555556666666777777766655322 12245667777788
Q ss_pred HHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 292 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
.+|+.+..++.. +-.--..+-..|+..+...++.-+|-++..+....|.. .+..+++...+++|.++...
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHh
Confidence 877777766542 11111122255666677777777777776665433321 12233344445555444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.36 E-value=3.5 Score=36.52 Aligned_cols=19 Identities=0% Similarity=-0.206 Sum_probs=12.1
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 012234 352 GASISGDVELGKFVCDHLF 370 (468)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~ 370 (468)
.+.+.++++.|...|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456677777777776443
|
It is also involved in sporulation []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.21 Score=37.24 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=52.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.-+....|+.+.|++.|.+++.+-|.++++|+.-+.++.-.|+.++|+.=+.+..+..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3467889999999999999999999999999999999999999999999888887743
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.93 E-value=14 Score=41.91 Aligned_cols=148 Identities=8% Similarity=-0.003 Sum_probs=87.7
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHHHHHHHHhh-cCCCCeehHHHHHHHHHhcCC
Q 012234 47 SVLQACGQSSDIVFGMEVHNFVIESHI--KMDLWICNALIGMYAKCGSLDYARALLDE-MSDKDEVSYSAIISGYMVHGF 123 (468)
Q Consensus 47 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~ 123 (468)
++..+--+.+.+.+|...++.-..... ......+-.+...|+..++.|...-+... ..++ . ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--s-l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP--S-LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc--c-HHHHHHHHHhhcc
Confidence 444455677788888887777311110 11233444455588888888877766653 2222 2 2233445567788
Q ss_pred HHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCChhhHHHHHH
Q 012234 124 VEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTI-SSIFSLFSHFSNLKGGKEIHG 198 (468)
Q Consensus 124 ~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~ 198 (468)
+..|...|+.+.+ |+ ..+++-++......|.++.++-..+-..... .+....+ +.-+.+-.+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 8888888888876 33 4567777777777788877777655554431 2222222 333445567777777666654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.91 E-value=4 Score=35.58 Aligned_cols=140 Identities=11% Similarity=0.031 Sum_probs=80.4
Q ss_pred HHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCc----chHHHHHHHHHHcCChH
Q 012234 182 SLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL----IIWTAIISAYAAHGDAS 257 (468)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 257 (468)
......|+...+..++........ -+......++.+|...|+.+.|..++..+..... .....-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345567777777777777776542 2345555678888888888888888888765321 11222334444444444
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccC
Q 012234 258 KAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325 (468)
Q Consensus 258 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 325 (468)
+...+-.+.-. .| |...-..+...+...|+.+.|...+-.+.++..---|...-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444333 34 4555556667777778888877655555433111223344555555555444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.18 Score=29.84 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhh
Q 012234 9 WNSMIAGYSQGGFYEECKALFREML 33 (468)
Q Consensus 9 y~~li~~~~~~g~~~~A~~~~~~m~ 33 (468)
|..+..+|.+.|++++|+++|++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444445555555555555444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.81 E-value=15 Score=41.75 Aligned_cols=311 Identities=10% Similarity=0.042 Sum_probs=172.2
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcC----CCC--eehHHHHHHHHHhcCCHHHHHHHHhh-CCCCCHhHHHHHHHHHHhCCC
Q 012234 82 ALIGMYAKCGSLDYARALLDEMS----DKD--EVSYSAIISGYMVHGFVEKAMDLFQV-MKRPGLSTWNAVISGLVQNNR 154 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 154 (468)
.+..+-.+++.+.+|.-.+++-. +.+ ..-|..+...|...++++...-+... ...|+. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 45556667888999999998832 111 12334444478888888777666663 333332 223445567899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 012234 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234 (468)
Q Consensus 155 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 234 (468)
+..|...|+.+.+.+ ++...+++.+++.....|.++......+-.....-+.....++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999998874 344677888888887888887777655544433212222223333444567777777776665
Q ss_pred ccCCCcchHHHH--HHHHHHcCC--hHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 012234 235 FKGRSLIIWTAI--ISAYAAHGD--ASKAVSLFNEMLNNGIQP--------D-PVTFTAVLSACAHSGLVDKAWDIFNAM 301 (468)
Q Consensus 235 ~~~~~~~~~~~l--~~~~~~~g~--~~~a~~~~~~m~~~~~~p--------~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (468)
..+...|... +....+..+ .-.-.+..+.+.+.-+.| + ...|..++....-. +.+. ..+..
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~---~~~~l 1616 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN---SIEEL 1616 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH---HHHHh
Confidence 4455555544 222222221 111112333332221111 0 12233333222111 1111 11111
Q ss_pred hhhcCCCCCH------hHHHHHH---HHHhccCChHHHH-HHHHhCCCCC-----CHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 302 SGQYGIQPSV------EHYACMV---GVLSRARRISEAT-EFVSKMPVKP-----SAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 302 ~~~~~~~p~~------~~~~~l~---~~~~~~~~~~~A~-~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
. +..++. ..|..-+ +.+.+..+.--|. +.+......| -..+|....+.+...|.++.|...+
T Consensus 1617 ~---~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1617 K---KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred h---ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1 223321 1121111 1222211111111 1111111122 3578999999999999999999998
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 367 DHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
-.+.+..+ +..+...+..++..|+...|+.++++-.....
T Consensus 1694 l~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1694 LNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred Hhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 88887774 46788999999999999999999999886554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.9 Score=33.36 Aligned_cols=135 Identities=9% Similarity=0.060 Sum_probs=90.6
Q ss_pred HHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC--CHHHHHHHHhh
Q 012234 25 CKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG--SLDYARALLDE 102 (468)
Q Consensus 25 A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~ 102 (468)
..+.++.+. ..+++|+...+..++..+.+.|.+....+ ++..++-+|.......+-.+.... -..-|++++.+
T Consensus 13 llEYirSl~-~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 13 LLEYIRSLN-QHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH
Confidence 355666666 77899999999999999999998765544 455665566555444432222211 13445555555
Q ss_pred cCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 012234 103 MSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168 (468)
Q Consensus 103 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 168 (468)
+ ...+..++..+...|++-+|+++.+.....+......++.+..+.++..--..+++-....
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 3456778888999999999999998875544445566777777777776666666555543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.17 Score=27.81 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
+|..+...+...|++++|...|+++.+.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666667777777777777666665
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.15 Score=28.60 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEI 372 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 372 (468)
+|..|...|...|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888899999999999999886544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.58 E-value=2.1 Score=40.18 Aligned_cols=121 Identities=11% Similarity=0.001 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEE--
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPE--NTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIE-- 418 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-- 418 (468)
..+-..+..++.+.|+.++|++.++++.+..|. +..+...|+.+|...+++.++..++.+--+..+++....+|..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334455677777888888888888888877654 4456778888888888888888888776544443333322211
Q ss_pred --ECCEEEEEEeCC-CCCCChHHHHHHHHHHHHHHHHcCCcCCcchhh
Q 012234 419 --CSGGLQSFVAKD-TSGDKSEQIYLILERLLGLMREEGYVLLDEVEE 463 (468)
Q Consensus 419 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~ 463 (468)
....-..|.... ...+........++.+.+.++-+-.+|.--+|.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 000011111110 111212223345566667777777777665543
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.38 E-value=12 Score=39.40 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
...|+.++...|..++|.++-+.
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~Lq~~ 1209 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARALQKA 1209 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 45667777777777777765333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.26 E-value=2.6 Score=34.24 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHH--HH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDP--VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA--CM 317 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~l 317 (468)
.+..+...|.+.|+.+.|.+.|.++.+....+.. ..+..+++.....+++..+...+.++........|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556666777777777777777777665444433 2445566666677777777776666554211111111111 11
Q ss_pred H--HHHhccCChHHHHHHHHhC
Q 012234 318 V--GVLSRARRISEATEFVSKM 337 (468)
Q Consensus 318 ~--~~~~~~~~~~~A~~~~~~~ 337 (468)
. -.+...+++.+|-+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1123456777777776665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.25 E-value=2 Score=36.67 Aligned_cols=183 Identities=8% Similarity=0.088 Sum_probs=109.3
Q ss_pred CChHHHHHHHhhccC-------CCcchHHHHHHHHHHcCChHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHhccCC
Q 012234 223 GFLHGAQRVFDRFKG-------RSLIIWTAIISAYAAHGDASKAVSLFNEMLN---NGI--QPDPVTFTAVLSACAHSGL 290 (468)
Q Consensus 223 g~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~--~p~~~~~~~l~~~~~~~~~ 290 (468)
...++|+.-|++..+ .+..+...++..+.+.|++++.+..+.++.. +.+ .-+..+.+.+++..+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666666543 1224556677778888888888877777642 112 2235567777776666666
Q ss_pred HHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC-------CCC-------CHHHHHHHHHH
Q 012234 291 VDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP-------VKP-------SAKVWGALLYG 352 (468)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~-------~~~~~~~l~~~ 352 (468)
.+....+++.-.....-..+ -.|-..|...|...+.+.+..++++++. ... -..+|..=+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55554444433221111111 2233567777888888888888887762 111 13455556777
Q ss_pred HHHcCChHHHHHHHHHHHhhC--CCCcchHHHH----HHHHHHcCChHHHHH-HHHHHHh
Q 012234 353 ASISGDVELGKFVCDHLFEIE--PENTGNYIIM----ANLYSQAGRWDEADR-VREQMKE 405 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l----~~~~~~~g~~~~A~~-~~~~m~~ 405 (468)
|....+-.....++++++... .|+|...... +.+..+.|+|++|.. +|+..+.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 888888888888898887763 3455444332 344667788888764 4454444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.85 Score=35.14 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=22.0
Q ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 356 SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.++.+++..++..+.-+.|..+..-..-+..+...|+|++|.++++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 34444444444444444444444444444444444444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.93 E-value=8.2 Score=38.61 Aligned_cols=62 Identities=18% Similarity=0.005 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCC-------hHHHHHHHHHHHHhCC
Q 012234 10 NSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD-------IVFGMEVHNFVIESHI 73 (468)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~ 73 (468)
-.+|--|.|.|++++|.++..+.. .........+...+..+....+ .+....-|++..+...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~--~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENR--NQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTG--GGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhh--hhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 356777889999999999996665 2245666778888888876532 2355555665555443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.21 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.++..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.1 Score=35.29 Aligned_cols=72 Identities=14% Similarity=0.042 Sum_probs=44.6
Q ss_pred hccCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCCh
Q 012234 322 SRARRISEATEFVSKMP-VKPSAKVWGA-LLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 393 (468)
.+.++.+++..++..+. ..|....... -...+...|++.+|+.+++.+.+..|..+..-..++.++...|+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 45667777777777763 4454332222 234456777788888887777666666665555666666665554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.50 E-value=13 Score=37.46 Aligned_cols=137 Identities=12% Similarity=0.108 Sum_probs=73.5
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Q 012234 17 SQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYA 96 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 96 (468)
-+.|++++|..-|-+-. .. +.|. .++.-+........-..+++.+.+.|.. +...-..|+.+|.+.++.++-
T Consensus 379 y~Kgdf~~A~~qYI~tI-~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETI-GF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HhcCCHHHHHHHHHHHc-cc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 34555555555555443 11 1221 2333333444444445555556666654 444456677888888888777
Q ss_pred HHHHhhcCCCCe-ehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 012234 97 RALLDEMSDKDE-VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165 (468)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 165 (468)
.++.+...+... .-....+..+.+.+-.++|..+-.+... .....+. .+-..+++++|++++..+
T Consensus 451 ~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 777665552111 1244455555566666666655554433 2333333 234567788888887665
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.3 Score=26.95 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=21.6
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Q 012234 65 HNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97 (468)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 97 (468)
|++.++..+. +...|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555533 6777777888888888877775
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.32 Score=26.66 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.+|..++.+|...|++++|+..+++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46889999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.25 Score=25.23 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHcCChHHHHHHHH
Q 012234 378 GNYIIMANLYSQAGRWDEADRVRE 401 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~ 401 (468)
.....++.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677888888888888888765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.00 E-value=5 Score=31.60 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=50.1
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCCCHhHH-HHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY-ACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 361 (468)
.-...++.+++..+++.+. -+.|..... ..-...+.+.|++.+|+.+|+++. ..|....-..|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3456678888888888877 445653322 222345678888888888888884 33444444445544444333333
Q ss_pred HHHHHHHHHhhCC
Q 012234 362 GKFVCDHLFEIEP 374 (468)
Q Consensus 362 a~~~~~~~~~~~~ 374 (468)
=.....++.+..+
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3333444444443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.93 E-value=3.1 Score=31.47 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhh-CCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 359 VELGKFVCDHLFEI-EPEN-TGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 359 ~~~a~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..+.+.+++...+. .|.. ......|+-++.+.|++++++++.+.+.+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444555555442 2221 22233444455555555555555555544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.84 E-value=7.6 Score=33.34 Aligned_cols=232 Identities=16% Similarity=0.156 Sum_probs=113.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHccCChhhHHHHHHHHHHc-----CCCCchhH
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQA---SGVR--PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN-----RYDRNIYV 211 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 211 (468)
...++..+.+.|++++....+.+|+. ..+. -+..+.+.++...+...+.+....+|+.-.+. +-+.--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 34455666666666666666666542 1111 12334455555445455544444444432221 11111123
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCC------------C---cchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKGR------------S---LIIWTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDP 275 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~ 275 (468)
-..|...|...|.+.+..+++.++.+. + ...|..-|+.|..+.+-.....++++.... ..-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345666777777777777777665431 1 135666677888777777777777776542 233444
Q ss_pred HHHHHHHHH-----HhccCCHHHHHHHHHHhhhhcCC--CCCHh---HHHHHHHHHhccCC----hHHHHHHHHhCCCCC
Q 012234 276 VTFTAVLSA-----CAHSGLVDKAWDIFNAMSGQYGI--QPSVE---HYACMVGVLSRARR----ISEATEFVSKMPVKP 341 (468)
Q Consensus 276 ~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~--~p~~~---~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~ 341 (468)
.... +|+- ..+.|.+++|..-|-++.+.+.- .|... -|..|...+.+.|- ..+|. -.+..|
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdP 302 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDP 302 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCH
Confidence 4433 3333 34567777776544344333211 22221 23444455554441 11110 011345
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
.......|+.+|.. +++.+-++++..-...--++|..
T Consensus 303 EIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpFI 339 (440)
T KOG1464|consen 303 EILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPFI 339 (440)
T ss_pred HHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHHH
Confidence 56667777777754 35555555544433332334433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.52 Score=27.20 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFE 371 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 371 (468)
+++.|...|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344445555555555555555554443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.62 E-value=6.2 Score=35.17 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh--CC----CHHHHHHHHhhcCC
Q 012234 58 IVFGMEVHNFVIESHIKMDLWICNALIGMYAK--CG----SLDYARALLDEMSD 105 (468)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~ 105 (468)
++....+++.+.+.|..-+..+|-+....... .. ...+|..+|+.|++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 45667888899999988777666553333332 11 24455555655554
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.57 E-value=12 Score=35.24 Aligned_cols=97 Identities=6% Similarity=-0.050 Sum_probs=62.8
Q ss_pred CCCHhH-HHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 308 QPSVEH-YACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGAS--ISGDVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 308 ~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
.|+..+ -+.+++.+-+.|-..+|.+.+..+. .+|+...|..++..-. ..-+...+...++.+..-...++..|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 344433 3556677777888888888887773 3456677777765432 2334677777887777664467777776
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 012234 383 MANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
....-...|+.+.+-.++.+..
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHhhccCCCcccccHHHHHHH
Confidence 6666667777777766665543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.57 E-value=7.5 Score=32.70 Aligned_cols=81 Identities=10% Similarity=-0.027 Sum_probs=44.1
Q ss_pred CChHHHHHHHHhCC-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch-------HHHHHHHHHH
Q 012234 325 RRISEATEFVSKMP-----VKPS---AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN-------YIIMANLYSQ 389 (468)
Q Consensus 325 ~~~~~A~~~~~~~~-----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~l~~~~~~ 389 (468)
.++++|+..|++.. ...+ ...+.-+...-...+++.+|+.+|++......+|+-. +..-+-++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 45666666665552 1111 1233333444566789999999999988775544432 2222333333
Q ss_pred cCChHHHHHHHHHHHh
Q 012234 390 AGRWDEADRVREQMKE 405 (468)
Q Consensus 390 ~g~~~~A~~~~~~m~~ 405 (468)
..+.-.+.+.+++-.+
T Consensus 208 ~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQE 223 (288)
T ss_pred cccHHHHHHHHHHHHh
Confidence 3555555555555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.56 E-value=2 Score=34.96 Aligned_cols=60 Identities=7% Similarity=0.079 Sum_probs=30.8
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 012234 44 TVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD--LWICNALIGMYAKCGSLDYARALLDEM 103 (468)
Q Consensus 44 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 103 (468)
.+..+...+.+.|+.+.|.+.|..+.+....+. ...+-.+|+.....|++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445555555556666666666655555433322 223344555555555555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.54 E-value=7.1 Score=32.41 Aligned_cols=161 Identities=15% Similarity=0.161 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++--.|++.-|.+-+...-....-.|-...|-.+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 467777777777888888888888777653222222222222 23345777777766655553311122122222211
Q ss_pred HhccCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------cchHHHHHHHHHHcCC
Q 012234 321 LSRARRISEATEFV-SKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN-------TGNYIIMANLYSQAGR 392 (468)
Q Consensus 321 ~~~~~~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~ 392 (468)
.+.-++.+|..-+ ++.. ..|..-|...+-.+.- |++. .+.+++++..-..++ ..+|..|+.-|...|+
T Consensus 177 -E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred -HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2233555565433 3332 3333333333322211 1111 112222222222221 3478889999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 012234 393 WDEADRVREQMKESGL 408 (468)
Q Consensus 393 ~~~A~~~~~~m~~~~~ 408 (468)
.++|..+|+-.+...+
T Consensus 253 ~~~A~~LfKLaiannV 268 (297)
T COG4785 253 LDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999987766443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.53 E-value=2.9 Score=36.47 Aligned_cols=78 Identities=8% Similarity=0.028 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHH-----cCCCCchhHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK-----NRYDRNIYVATA 214 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 214 (468)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356677788888888888888888888764 55777888888888888988888888887765 567777666554
Q ss_pred HHHH
Q 012234 215 IIDT 218 (468)
Q Consensus 215 l~~~ 218 (468)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.9 Score=37.65 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=73.7
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC-Cc-----chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 012234 203 NRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-SL-----IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276 (468)
Q Consensus 203 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 276 (468)
.|.+....+...++..-....+++.++..+-++... +. .+-...++.+. .-++++++.++..=+.-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 344555666667777777778888888888777642 21 12222233332 336778888888888899999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhh
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQ 304 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (468)
+++.+|+.+.+.+++.+|.++.-.|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988877754
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.48 Score=25.57 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 381 IIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..++.+|.+.|++++|.+.++++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444455555555555555555443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=91.33 E-value=3.9 Score=29.04 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=53.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHH
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (468)
+++.+++...++.+++..+.+ +..+.+.|++++|..+.+...-||...|-+|.. .+.|.-+++..
T Consensus 25 ~tIAdwL~~~~~~~E~v~lIR-------------lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLIR-------------LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHHhcCCchHHHHHHHH-------------HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHH
Confidence 445555555555555555443 335677888888888888887788888877654 46677777777
Q ss_pred HHHHHHHCCCCCCHHHH
Q 012234 161 LVREMQASGVRPNAVTI 177 (468)
Q Consensus 161 ~~~~m~~~~~~p~~~~~ 177 (468)
.+.+|...| .|...+|
T Consensus 90 rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 777777766 4554444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.95 E-value=19 Score=36.11 Aligned_cols=101 Identities=8% Similarity=-0.021 Sum_probs=57.4
Q ss_pred HHHHhcCCChhHHHHHHHHhhhCCCCCC---CcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 012234 13 IAGYSQGGFYEECKALFREMLNSPVLRP---DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK 89 (468)
Q Consensus 13 i~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 89 (468)
|..+.+.+.+++|+++.+.-. |..| -.......|..+...|+++.|-...-.|... +..-|.--+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 566778888999998887654 2234 2344667777777788888887777666542 33444444444444
Q ss_pred CCCHHHHHHHHhhcCC-CCeehHHHHHHHHHh
Q 012234 90 CGSLDYARALLDEMSD-KDEVSYSAIISGYMV 120 (468)
Q Consensus 90 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 120 (468)
.++......++=.-.. -++..|..++..+..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 4444332222111111 144556666665554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.61 Score=41.08 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=77.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISG 357 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 357 (468)
-..-|.++|.+++|+..|.... .+.| ++.++..-..+|.+..++..|+.=..... .+.-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999877 4456 77888888888999988887776554442 1111334555555555678
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHH
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 399 (468)
+..+|.+-++.++++.|.+... -..|.+.....++.-+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~EL----kK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIEL----KKSLARINSLRERKIA 217 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHH----HHHHHHhcchHhhhHH
Confidence 8999999999999999986543 3444444445554443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.4 Score=25.88 Aligned_cols=25 Identities=16% Similarity=-0.069 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 346 WGALLYGASISGDVELGKFVCDHLF 370 (468)
Q Consensus 346 ~~~l~~~~~~~g~~~~a~~~~~~~~ 370 (468)
+..+..++...|++++|.+.|++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4556778889999999999999875
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.66 E-value=5.4 Score=37.24 Aligned_cols=125 Identities=10% Similarity=-0.010 Sum_probs=79.1
Q ss_pred HHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCh
Q 012234 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDV 359 (468)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 359 (468)
|.--...|+.-.|-+-+......+.-.|+.... ....+...|.++.+...+.... +.....+...++......|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 333445577666655444444332333433322 2334566788888887777663 344556777778888888888
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 360 ELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
++|....+.++.....++.+...-+..-...|-++++...|+++.....
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 8888888888777666666665555555666778888888888765443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.56 Score=27.05 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.++..|+.+|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999998763
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.78 Score=25.00 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 378 GNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.+|..++.+|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678899999999999999999998876
|
... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.53 E-value=4.2 Score=33.37 Aligned_cols=76 Identities=13% Similarity=-0.045 Sum_probs=48.2
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC-------CCeehHHHHHHHHHhcCC
Q 012234 51 ACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD-------KDEVSYSAIISGYMVHGF 123 (468)
Q Consensus 51 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~ 123 (468)
.+++.|+ +.|++.|-.+...+.--++.....|...|. ..+.+++..++.+..+ .|+..+.+|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455555 556666666666554445555555555555 5667777777665542 356677778888888877
Q ss_pred HHHHH
Q 012234 124 VEKAM 128 (468)
Q Consensus 124 ~~~A~ 128 (468)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 77764
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.47 E-value=3.2 Score=29.28 Aligned_cols=63 Identities=22% Similarity=0.358 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 319 (468)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666677777777888999999999999999999999999988775422 24445655553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.22 E-value=6.2 Score=37.99 Aligned_cols=130 Identities=14% Similarity=0.110 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHH
Q 012234 79 ICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAV 158 (468)
Q Consensus 79 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 158 (468)
..+.++..+.+.|-.++|+++-- |+.- -.....+.|+++.|.++..+. .+..-|..|..+..+.+++..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhH
Confidence 44556666666666666665421 1110 112234566777776665543 3455677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 012234 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFD 233 (468)
Q Consensus 159 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 233 (468)
.+.|..... +..|+-.+...|+.+....+-....+.|. . |....+|...|+++++.+++.
T Consensus 686 ~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 686 SECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHH
Confidence 777766543 34555556666666655555555555442 1 122233444555555555544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.18 E-value=25 Score=34.84 Aligned_cols=274 Identities=10% Similarity=0.059 Sum_probs=157.0
Q ss_pred HHHHHHHHhhCCC-CCHhHHHHHHHH-----HHhCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccC--
Q 012234 124 VEKAMDLFQVMKR-PGLSTWNAVISG-----LVQNNRHEAVLDLVREMQA-------SGVRPNAVTISSIFSLFSHFS-- 188 (468)
Q Consensus 124 ~~~A~~~~~~~~~-~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 188 (468)
...|.+.++.... .++..-..+..+ +....+.+.|+.+|+.+.. .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777777665 333333333322 4456789999999999876 44 2224455666666543
Q ss_pred ---ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCChHHHHHHHhhccCCC-cchHHHHHHHHHH----cCChHHH
Q 012234 189 ---NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-TGFLHGAQRVFDRFKGRS-LIIWTAIISAYAA----HGDASKA 259 (468)
Q Consensus 189 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~----~g~~~~a 259 (468)
+.+.|..++....+.| .|+.......+..... ..+...|..+|....+.+ +.++-.+...|.. ..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677899998888887 3444333222222222 245778999998877643 3333333333322 3467889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH---Hhc----cCChHHHHH
Q 012234 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV---LSR----ARRISEATE 332 (468)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~----~~~~~~A~~ 332 (468)
..++++.-+.| .|...--...+..+.. +..+.+...+..+... |.+.....-..++.. ... ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 99999888887 3332222233333444 6666666555554432 322211111111111 111 225566667
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc-C--ChHHHHHHHHHHHh
Q 012234 333 FVSKMPVKPSAKVWGALLYGASIS----GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA-G--RWDEADRVREQMKE 405 (468)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~ 405 (468)
++.+....-+......+...|..- .+++.|...+.++.... ......++.++-.- | ++..|.+++++...
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 777665555666666666555432 35788888888877766 66667777766542 1 26788888887766
Q ss_pred CC
Q 012234 406 SG 407 (468)
Q Consensus 406 ~~ 407 (468)
.+
T Consensus 538 ~~ 539 (552)
T KOG1550|consen 538 ED 539 (552)
T ss_pred cC
Confidence 44
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.11 E-value=4.1 Score=29.11 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 258 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.+ +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 5556666676777889999999999999999999999999988876533 333366666543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.96 Score=26.71 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 381 IIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
..|+.+|...|+.+.|.+++++....|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4688999999999999999999986543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.83 E-value=1.5 Score=38.85 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=55.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccC
Q 012234 247 ISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR 325 (468)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 325 (468)
..-|.++|++++|+..|...+.. .| |.+++..-..+|.+...+..|+.-....... -...+.+|.|.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 34689999999999999987764 55 8888888888999998888777766665531 123455666555
Q ss_pred ChHHHHHHHHh
Q 012234 326 RISEATEFVSK 336 (468)
Q Consensus 326 ~~~~A~~~~~~ 336 (468)
....++....+
T Consensus 173 ~AR~~Lg~~~E 183 (536)
T KOG4648|consen 173 QARESLGNNME 183 (536)
T ss_pred HHHHHHhhHHH
Confidence 44444444333
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.73 E-value=12 Score=36.13 Aligned_cols=149 Identities=19% Similarity=0.141 Sum_probs=97.7
Q ss_pred hcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (468)
-.|+++.|..++..+.++ ..+.++.-+.++|-.++|+++- +|...- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 346666666655555532 2344555566667666666542 232211 1223567888888877665
Q ss_pred hhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 301 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
.. +..-|..|.++....+++..|.+.|.+.. -|..|+-.+...|+-+....+-....+.+..|..
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A-- 727 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA-- 727 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH--
Confidence 43 45678899999999999999999988764 3556677777788877776776666666665543
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 012234 381 IIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
..+|...|+++++.+++.+
T Consensus 728 ---F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 ---FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---HHHHHHcCCHHHHHHHHHh
Confidence 2357788999999888654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.58 E-value=11 Score=30.94 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=71.2
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCC-----HhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPS-----VEHYACMVGVLSRARRISEATEFVSKM-PVKPS-AKVWGALLYGASISG 357 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 357 (468)
+...|++++|..-|...... +++. ...|..-..++.+.+.++.|++-..+. .+.|. ......-..+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45677777777777777652 2332 223333345566777777777666555 33442 223333345677778
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHH--HHHHHHHhCC
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD--RVREQMKESG 407 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~m~~~~ 407 (468)
.+++|++-|+++.+.+|....+-...++.--....-.+.+ +++.++++.|
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999998877655555444433322222222 3455555554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.53 E-value=1.3 Score=27.50 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 347 GALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
..+.-++.+.|++++|.+..+.+++.+|+|..+-
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4466778899999999999999999999886543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.50 E-value=18 Score=32.34 Aligned_cols=134 Identities=14% Similarity=0.249 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----ChhhHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCh
Q 012234 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSH--FS----NLKGGKEIHGYAVKNRY---DRNIYVATAIIDTYAKTGFL 225 (468)
Q Consensus 155 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 225 (468)
+++.+.+++.|.+.|+.-+..+|......... .. ...++..+|+.|++.-. .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788888888888888777654333322 11 24556677777776431 1222333333221 11111
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHh
Q 012234 226 HGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV--TFTAVLSACAHSGL--VDKAWDIFNAM 301 (468)
Q Consensus 226 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~ 301 (468)
+. -.+.+..+|+.+.+.|+..+.. ....++..+..... ...+..+++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1245556666666666554422 22223322221111 34566677777
Q ss_pred hhhcCCCCCHhHHHHHH
Q 012234 302 SGQYGIQPSVEHYACMV 318 (468)
Q Consensus 302 ~~~~~~~p~~~~~~~l~ 318 (468)
.+. |+++....|..+.
T Consensus 209 ~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHc-CCccccccccHHH
Confidence 665 7776665555443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.40 E-value=17 Score=32.13 Aligned_cols=9 Identities=11% Similarity=0.589 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 012234 157 AVLDLVREM 165 (468)
Q Consensus 157 ~a~~~~~~m 165 (468)
++...+..+
T Consensus 90 ~a~~~L~~l 98 (280)
T PRK09687 90 NVFNILNNL 98 (280)
T ss_pred HHHHHHHHH
Confidence 344444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.19 E-value=4.6 Score=28.86 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=34.3
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
.+..-|++.+..+.+.+|.+.+++..|.++++-+.....+....|-.++.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 34467888899999999999999999999998888776554446655543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.08 E-value=4.3 Score=28.65 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 012234 337 MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384 (468)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 384 (468)
+..-|++.+..+.+++|.+.+|+..|.++++-......++...|-.+.
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 346788888888888888888888888888877755443444554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.03 E-value=34 Score=35.02 Aligned_cols=194 Identities=16% Similarity=0.157 Sum_probs=97.7
Q ss_pred HhcCChHHHHHHHhhccC----CCc-------chHHHHHH-HHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 012234 220 AKTGFLHGAQRVFDRFKG----RSL-------IIWTAIIS-AYAAHGDASKAVSLFNEMLNN----GIQPDPVTFTAVLS 283 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~----~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~ 283 (468)
....++.+|..++.++.. ++. ..|+.+-. .....|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345677777777665432 221 23444432 334567788888877776553 11223344555556
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCCCHh---HHHHHH--HHHhccCCh--HHHHHHHHhC-----CCCC----CHHHHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVE---HYACMV--GVLSRARRI--SEATEFVSKM-----PVKP----SAKVWG 347 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~--~~~~~~~~~--~~A~~~~~~~-----~~~~----~~~~~~ 347 (468)
+..-.|++++|..+.....+. .-.-+.. .|..+. ..+...|+. .+.+..+... ..+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 666678888887777665432 1112222 222222 234455532 2222233222 1111 223334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh----CCCCcc---hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEE
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEI----EPENTG---NYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 417 (468)
.++.++.+ .+.+..-.....+. .|.... .+..|+.++...|+.++|...++++......+.+...|.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 44444444 33333333333332 222211 223677888888888888888888877666554554444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.82 E-value=13 Score=29.82 Aligned_cols=55 Identities=16% Similarity=0.121 Sum_probs=29.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhh
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (468)
+..+|.++......+-+-..+-+-....-..|.-+-.+.|++..|.+.|..+..+
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 3445666665555555444332222333344444555666666666666666554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.76 E-value=19 Score=31.87 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=26.0
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 238 RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. +|...+..+.
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 444444445555555554 33444433333322 1 122344555555553 4555555554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.61 E-value=0.39 Score=37.52 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=48.7
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHH
Q 012234 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259 (468)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (468)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3455566667777777777777666556667777777777777766777666663222 2223444555555555555
Q ss_pred HHHHHH
Q 012234 260 VSLFNE 265 (468)
Q Consensus 260 ~~~~~~ 265 (468)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.42 E-value=34 Score=34.39 Aligned_cols=167 Identities=8% Similarity=0.017 Sum_probs=84.0
Q ss_pred hhccCChHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHH
Q 012234 52 CGQSSDIVFGMEVHNFVIESHIKM---DLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAM 128 (468)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 128 (468)
+.+.+.+++|++.-+... |..| -..+....|..+...|++++|-...-.|...+..-|..-+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 334455566665544322 2222 23456667777777888888887777777777766666666666665554322
Q ss_pred HHHhhCCC-CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC
Q 012234 129 DLFQVMKR-PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR 207 (468)
Q Consensus 129 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 207 (468)
.++-.-.. .+...|..++..+.. .+... |.+.+.. .++ ..|+.+...-+.. .+..+. .-
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~L~-~~~~~----F~e~i~~-Wp~--~Lys~l~iisa~~----------~q~~q~--Se 503 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEFLA-SDVKG----FLELIKE-WPG--HLYSVLTIISATE----------PQIKQN--SE 503 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHHHH-HHHHH----HHHHHHh-CCh--hhhhhhHHHhhcc----------hHHHhh--cc
Confidence 22211111 234466666666655 22222 2222221 122 2222221110000 001110 11
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccCCCc
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSL 240 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 240 (468)
+......|+..|...+++++|+.++-...+.++
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 122333478888888888888888887776543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.14 E-value=38 Score=34.67 Aligned_cols=215 Identities=13% Similarity=0.040 Sum_probs=109.5
Q ss_pred HccCChhhHHHHHHHHHHcCCCCchh-------HHHHHH-HHHHhcCChHHHHHHHhhccC--------CCcchHHHHHH
Q 012234 185 SHFSNLKGGKEIHGYAVKNRYDRNIY-------VATAII-DTYAKTGFLHGAQRVFDRFKG--------RSLIIWTAIIS 248 (468)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~ 248 (468)
....++.+|..++.++...-..|+.. .++.|- ......|+++.|.++.+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45566777777776666543232221 122221 223346777888777665443 34456777778
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHhccCC--HHHHHHHHHHhhhhcCC-CC----CHhHHHH
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAV-----LSACAHSGL--VDKAWDIFNAMSGQYGI-QP----SVEHYAC 316 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-----~~~~~~~~~--~~~a~~~~~~~~~~~~~-~p----~~~~~~~ 316 (468)
+..-.|++++|..+..+..+..-.-+...+..+ ...+...|. .++.+..|......+.. .| -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999998887776553222233333222 223455663 23333344333322111 11 1233344
Q ss_pred HHHHHhccCChHHHHHH----HHhCC-CCCC--HHH--HHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCcchHHHH--
Q 012234 317 MVGVLSRARRISEATEF----VSKMP-VKPS--AKV--WGALLYGASISGDVELGKFVCDHLFEIE--PENTGNYIIM-- 383 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~----~~~~~-~~~~--~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l-- 383 (468)
+..++.+ .+.+..- +.-.. ..|. ... +..|+......|+.+.|...+.++.... +.....|...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 3333322 22111 2222 222 2356777888999999999988887763 2212222221
Q ss_pred -H--HHHHHcCChHHHHHHHHH
Q 012234 384 -A--NLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 384 -~--~~~~~~g~~~~A~~~~~~ 402 (468)
+ ..-...|+..+|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 1 123346777777766554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=86.76 E-value=1.4 Score=22.92 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+..++.++...|++++|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555555555555554443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.52 E-value=10 Score=37.68 Aligned_cols=184 Identities=12% Similarity=0.198 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchh
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA----------VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIY 210 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 210 (468)
+...++-.|....+++..+++.+.+... ||. ..|...++---+-|+-++|..+.-.+++..-+..+.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4455556666777777777777777652 322 123333333344566666666665555533222222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhc
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVT---FTAVLSACAH 287 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~ 287 (468)
. ||-+|++ |+.|. +.+.|...+..+.|.++|++..+ +.|+..+ +..|+.+
T Consensus 280 m-------~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a--- 332 (1226)
T KOG4279|consen 280 M-------YCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA--- 332 (1226)
T ss_pred e-------eeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH---
Confidence 1 2222321 11111 11223334455677777777665 3555443 2223322
Q ss_pred cCC-HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 288 SGL-VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 288 ~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
.|. ++...+ +.. .--.|-..+++.|..++..++++-. ..+.+-.-++++.+|++..
T Consensus 333 aG~~Fens~E----lq~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 333 AGEHFENSLE----LQQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hhhhccchHH----HHH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHH
Confidence 221 111111 110 0011233456777777666665432 2334445567788888888
Q ss_pred HHHHhhCCCCc
Q 012234 367 DHLFEIEPENT 377 (468)
Q Consensus 367 ~~~~~~~~~~~ 377 (468)
+.|.++.||.-
T Consensus 390 e~mfKLk~P~W 400 (1226)
T KOG4279|consen 390 EMMFKLKPPVW 400 (1226)
T ss_pred HHHhccCCcee
Confidence 88888877643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.50 E-value=16 Score=29.82 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCCcch--HHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKGRSLII--WTAIISAYAAHGDASKAVSLFNEMLNNG 270 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 270 (468)
|.......|.+++|+..++....++-.. ...-...+...|+-++|..-|.+....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4455556666666666666665554332 2333445666666666666666666553
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=86.20 E-value=6 Score=24.51 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
...++-++.+.|++++|.+..+.+.+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4567889999999999999999998743
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.19 E-value=5.4 Score=34.91 Aligned_cols=63 Identities=16% Similarity=0.069 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
..+.+-.+|.+.++++.|....+.++...|+++.-+.--+-.|.+.|.+..|..=++..++.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 446666788999999999999999999999999888889999999999999999888876643
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.34 E-value=21 Score=29.86 Aligned_cols=157 Identities=10% Similarity=-0.058 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccCCCcc-hHHHH--HHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLI-IWTAI--ISAYAAHGDASKAVSLFNEMLNNG-IQPDPVTFTAVLSA 284 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~ 284 (468)
+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+ .-++.-.|++.-|.+=+...-+.. -.|=...|..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 456777777777888888888888877765442 22222 122334577777776665554432 122222333222
Q ss_pred HhccCCHHHHHHHH-HHhhhhcCCCCCHhHHHHH-HHHHhccCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHHc
Q 012234 285 CAHSGLVDKAWDIF-NAMSGQYGIQPSVEHYACM-VGVLSRARRISEATEFVSKMPV------KPSAKVWGALLYGASIS 356 (468)
Q Consensus 285 ~~~~~~~~~a~~~~-~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~ 356 (468)
...-+..+|..-+ ++.. + .|..-|... +..|.-.=..+.+.+-...-.. ..-..||--|..-+...
T Consensus 177 -E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred -HhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2233455554433 3333 2 232333322 2222211112222222221110 01145677777888888
Q ss_pred CChHHHHHHHHHHHhhC
Q 012234 357 GDVELGKFVCDHLFEIE 373 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~ 373 (468)
|+.++|..+|+-+...+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999988888777654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.21 E-value=3.2 Score=33.28 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
+++|+.-|++++.++|+...++.+++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 456667777777778877777777777777654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.11 E-value=33 Score=32.04 Aligned_cols=103 Identities=17% Similarity=0.053 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEE
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQ 424 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 424 (468)
-...|+.-|...|+..+|....+++---.-.+..++..++.+..+.|+-..-+.+++..-+.|+ |+.++.-+
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl--------IT~nQMtk 582 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL--------ITTNQMTK 582 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc--------eeHHHhhh
Confidence 3456788899999999998887764333334667788999999999987777777777777665 22222222
Q ss_pred EEEeCCCC----CCChHHHHHHHHHHHHHHHHcCC
Q 012234 425 SFVAKDTS----GDKSEQIYLILERLLGLMREEGY 455 (468)
Q Consensus 425 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~ 455 (468)
.|...+.. .-.+...++.++.....-.++|+
T Consensus 583 Gf~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~ 617 (645)
T KOG0403|consen 583 GFERVYDSLPDLSLDVPNAYEKFERYVEECFQNGI 617 (645)
T ss_pred hhhhhhccCcccccCCCcHHHHHHHHHHHHHHcCc
Confidence 22211111 11234446667777777778884
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=85.02 E-value=57 Score=34.68 Aligned_cols=257 Identities=13% Similarity=0.017 Sum_probs=152.2
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH-HHHHHHHhhcCCCCeehHHHHHHHH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSDKDEVSYSAIISGY 118 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~li~~~ 118 (468)
+|...-...+..+.+.+..+ +...+..+++ .++..+-...+.++.+.+.. .....+...+..+|+..-...+.++
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL 708 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVL 708 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHH
Confidence 77777777778887777644 5555555553 34555555666666554322 1122222334446666666666666
Q ss_pred HhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh-HHHHH
Q 012234 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG-GKEIH 197 (468)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~ 197 (468)
...+.. ....+...+..+|...-...+.++.+.+..+. +..... .++...-...+.++...+..+. +...+
T Consensus 709 ~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 654321 12345556667887777777777777665432 222222 4555555666777777765443 33444
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 012234 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ-RVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276 (468)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 276 (468)
..+.+ .++..+-...+.++.+.|..+.+. .+...+..++..+-...+.++...+. +++...+..+.+ .|+..
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~ 853 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLD 853 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHH
Confidence 44443 456778888899999998876553 34455556676677777788887775 456666666654 46666
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 319 (468)
.-...+.++.+......+...+..+.+ .+|..+-.....
T Consensus 854 VR~~A~~aL~~~~~~~~a~~~L~~al~----D~d~~Vr~~A~~ 892 (897)
T PRK13800 854 VRKAAVLALTRWPGDPAARDALTTALT----DSDADVRAYARR 892 (897)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHh----CCCHHHHHHHHH
Confidence 666677777775434566666766664 245444433333
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.36 E-value=7.6 Score=32.91 Aligned_cols=61 Identities=13% Similarity=-0.019 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 347 GALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 347 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
..+-.++...|++-++++....++...|.|..+|..-+.+.+..=+..+|.+=|....+..
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3344566678999999999999999999999999999999888888888888888776643
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=84.32 E-value=3.2 Score=29.22 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
...+++..+.+|+|......++..+...|++++|++.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344556666778888888888888888888888888777776654
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=84.30 E-value=1.3 Score=33.00 Aligned_cols=36 Identities=50% Similarity=0.768 Sum_probs=26.2
Q ss_pred ceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCcc
Q 012234 413 GRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMREEGYVLLDE 460 (468)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~ 460 (468)
+++|+.. +.|+.++.+||.. ++...+...|+.|+.+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~ 37 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTK 37 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhh
Confidence 5788876 9999999999987 3444556666666544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.82 E-value=11 Score=31.05 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHc---CCCCchhHHHHHHHHHHhcCChHHH
Q 012234 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN---RYDRNIYVATAIIDTYAKTGFLHGA 228 (468)
Q Consensus 155 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 228 (468)
-+.|.+.|-++...+.--++ .....+..|....+.+++..++..+.+. +-.+++.++.+|+..|.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34555555555555433333 3333333344455666666666655542 2245556666666666666665554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.81 E-value=3.7 Score=34.54 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=36.8
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHh-HHHHHHHHHhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCChHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVE-HYACMVGVLSRARRISEATEFVSKM-PVKPSAK-VWGALLYGASISGDVEL 361 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~ 361 (468)
|.....+..|...|.+.. -+.|+.. .|+.=+..+.+..+++.+..=-.+. ...||.. ....+.........+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 344445555555555544 3345442 2333344444455555544333222 2334332 22223333444455555
Q ss_pred HHHHHHHHHh
Q 012234 362 GKFVCDHLFE 371 (468)
Q Consensus 362 a~~~~~~~~~ 371 (468)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 5555555533
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.62 E-value=8.9 Score=31.92 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=46.6
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCC--CchHHHHHHHH
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIK--MDLWICNALIG 85 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 85 (468)
|.+..++.+.+.+..++|+...++-. +.. |.|...-..++..++-.|++++|..-++..-+..+. +-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qV-kak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQV-KAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHH-hcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34555667777777777777777665 222 345555666777777777777777666665554322 23345555554
Q ss_pred H
Q 012234 86 M 86 (468)
Q Consensus 86 ~ 86 (468)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.62 E-value=5.7 Score=32.97 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=45.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 314 YACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
.+..+..+.+.+..++|+...++- +.+| |..+-..++..++-.|++++|..-++-+-++.|...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344556677788888888777544 4555 455556677888888999998888888777777643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.23 E-value=24 Score=28.94 Aligned_cols=87 Identities=8% Similarity=0.034 Sum_probs=45.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-CCHhHHH-----HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 012234 116 SGYMVHGFVEKAMDLFQVMKR-PGLSTWN-----AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN 189 (468)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 189 (468)
..++..|++++|+..++.... +.-..+. .|.+.....|.+|+|+..++.....+. .......-...+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 345556666666666665442 2222222 233455666666666666655543321 11122333455666666
Q ss_pred hhhHHHHHHHHHHcC
Q 012234 190 LKGGKEIHGYAVKNR 204 (468)
Q Consensus 190 ~~~a~~~~~~~~~~~ 204 (468)
-++|+.-|+...+.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666654
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=82.83 E-value=10 Score=31.91 Aligned_cols=66 Identities=23% Similarity=0.200 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCChH-------HHHHHHHHHHhhC--CC----CcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 344 KVWGALLYGASISGDVE-------LGKFVCDHLFEIE--PE----NTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
..+..+.+.|...|+.+ .|.+.|.++.+.. |. .......++..+.+.|++++|.+.|.++...+-.
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34555666677777744 4555555555543 22 2345667889999999999999999999876643
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.57 E-value=9.5 Score=33.62 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=63.5
Q ss_pred eehHHHHHHHHHhcCCHHHHHHHHhhCCC-CCHh-----HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKR-PGLS-----TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181 (468)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 181 (468)
..+...++..-....+++.++..+-+++. |+.. +-.++++.+. .-++++++.++..=++-|+-||..+++.++
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 33444444444445566666666666553 2211 1222333333 345778888888888889999999999999
Q ss_pred HHHHccCChhhHHHHHHHHHHcC
Q 012234 182 SLFSHFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~ 204 (468)
..+.+.+++..|.++.-.|+...
T Consensus 143 D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999988888877777654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=82.34 E-value=42 Score=31.07 Aligned_cols=136 Identities=10% Similarity=0.137 Sum_probs=80.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH---hccCChH
Q 012234 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL---SRARRIS 328 (468)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~ 328 (468)
..++++.-..++++ .+--..++..+-..+...|+.+.|..++++..-.++ .++......+ ...|.
T Consensus 22 ~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e-----~~~~~~F~~~~~~~~~g~-- 89 (360)
T PF04910_consen 22 QSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE-----RAFHPSFSPFRSNLTSGN-- 89 (360)
T ss_pred HccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HHHHHHhhhhhcccccCc--
Confidence 33455554444422 133455666677777888888888777777652110 0000000000 00000
Q ss_pred HHHHHHHhCC--CCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHH-HcCChHHHHHHHH
Q 012234 329 EATEFVSKMP--VKPSAKVWGAL---LYGASISGDVELGKFVCDHLFEIEPE-NTGNYIIMANLYS-QAGRWDEADRVRE 401 (468)
Q Consensus 329 ~A~~~~~~~~--~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~ 401 (468)
.++. ..-|...|.++ +..+.+.|-+..|.+..+-+..++|. ||-.....++.|+ ++++++--+++.+
T Consensus 90 ------~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 90 ------CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred ------cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 0111 12244445444 56778899999999999999999988 8877777777766 5778887888887
Q ss_pred HHHh
Q 012234 402 QMKE 405 (468)
Q Consensus 402 ~m~~ 405 (468)
....
T Consensus 164 ~~~~ 167 (360)
T PF04910_consen 164 SPLA 167 (360)
T ss_pred hHhh
Confidence 7655
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.31 E-value=1.2 Score=39.49 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=55.7
Q ss_pred ccCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHH
Q 012234 323 RARRISEATEFVSKMP-VK-PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 400 (468)
..|.++.|++.|.... .. +....|..-..++.+.++...|++-+..+.+++|+...-|-.-+.+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 3455666666555442 22 233444444455666677777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCCC
Q 012234 401 EQMKESGLAK 410 (468)
Q Consensus 401 ~~m~~~~~~~ 410 (468)
....+.++..
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 7777766643
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.15 E-value=48 Score=31.69 Aligned_cols=170 Identities=9% Similarity=0.077 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 012234 210 YVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287 (468)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (468)
....+++..+.....+.-.+.+..++.. .+-..+..+++.|..+ ..+.-..+|+++.+..+ |......-+..+..
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yE 143 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYE 143 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHH
Confidence 3334455555555555555555555443 3334555666666665 34555666666655422 22222222222333
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCC------HhHHHHHHHHHhccCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcC
Q 012234 288 SGLVDKAWDIFNAMSGQYGIQPS------VEHYACMVGVLSRARRISEATEFVSKMP----VKPSAKVWGALLYGASISG 357 (468)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g 357 (468)
.++.+.+..+|.++..+ +-|. ...|..|.... ..+.+....+..++. ...-...+.-+-.-|....
T Consensus 144 kik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 144 KIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 35666666666665542 2221 12333333211 234444555544442 1122333444445556666
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
++.+|++++..+++.+..|.-+...++.-
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 67777777776666655444444444433
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.06 E-value=2.6 Score=21.77 Aligned_cols=27 Identities=11% Similarity=-0.076 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLF 370 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 370 (468)
..|..+...+...|+++.|...+++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356778888999999999999987654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=81.23 E-value=65 Score=32.58 Aligned_cols=224 Identities=9% Similarity=-0.080 Sum_probs=117.8
Q ss_pred cCChhhHHHHHHHHHHcC-CCCch--hHHHHHHHHHHhcCChHHHHHHHhhccCC--CcchHHHHHHHHHHcCChHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKNR-YDRNI--YVATAIIDTYAKTGFLHGAQRVFDRFKGR--SLIIWTAIISAYAAHGDASKAVS 261 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 261 (468)
..+.+.|...+....... ..+.. .+...+.......+..+++...+...... +......-+..-...++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 345577777777654432 22111 12233333333332355666666655432 33344444445557778877777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc-----------CCCCC------HhH--------HHH
Q 012234 262 LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY-----------GIQPS------VEH--------YAC 316 (468)
Q Consensus 262 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~p~------~~~--------~~~ 316 (468)
.+..|-... .-...-.--+.+++...|+.++|..+|+.+.... |.++. +.. -..
T Consensus 334 ~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ 412 (644)
T PRK11619 334 WLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMA 412 (644)
T ss_pred HHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHH
Confidence 777764422 1223333446666666788888888777754211 11100 000 011
Q ss_pred HHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCCcchHHHHHHHHHHcCCh
Q 012234 317 MVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE---PENTGNYIIMANLYSQAGRW 393 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 393 (468)
-+..+...|+...|...+..+....+......+.......|..+.++.........+ -.-|..|...+..+.+.-.+
T Consensus 413 ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v 492 (644)
T PRK11619 413 RVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGI 492 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCC
Confidence 223445667777777766665333455555666666677888888777665443321 11233466666666666666
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 012234 394 DEADRVREQMKESGLAKI 411 (468)
Q Consensus 394 ~~A~~~~~~m~~~~~~~~ 411 (468)
+.++-.--.-.++++.|.
T Consensus 493 ~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 493 PQSYAMAIARQESAWNPK 510 (644)
T ss_pred CHHHHHHHHHHhcCCCCC
Confidence 666654334446666554
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.92 E-value=25 Score=30.58 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=49.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHH---
Q 012234 146 ISGLVQNNRHEAVLDLVREMQAS--GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA--- 220 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 220 (468)
|.+++..++|.+++.+.-+--+. .++|. ....-|-.|++.+.+..+.++-....+..-.-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56777778888877766554432 23333 344445557777777777777666665433334444555555544
Q ss_pred --hcCChHHHHHHH
Q 012234 221 --KTGFLHGAQRVF 232 (468)
Q Consensus 221 --~~g~~~~a~~~~ 232 (468)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 346666666554
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.88 E-value=17 Score=34.14 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=70.0
Q ss_pred HHcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH
Q 012234 251 AAHGDASKAVS-LFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 251 ~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (468)
...|+...|-+ ++.-+....-.|+...+...| ....|+++.+.+.+....+ -+.....+..++++.....|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566555544 444444443345544444433 4567788887777766653 233445566777777777888888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 330 ATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 330 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
|..+-.-|- .-.++.+...........|-++++.-.+++...++|+
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 877776662 1123333333333444556677777777777777655
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.31 E-value=50 Score=30.73 Aligned_cols=150 Identities=18% Similarity=0.256 Sum_probs=91.7
Q ss_pred cCChHHHHHHHhhccCC----CcchHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHH
Q 012234 222 TGFLHGAQRVFDRFKGR----SLIIWTAIISA-YAAHGDASKAVSLFNEMLNNGIQPDPV----TFTAVLSACAHSGLVD 292 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~~----~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~ 292 (468)
.|+..++.+.+..+... ....+-.|+.+ .....+...|+++|+...-. -|... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 46777777777766542 23445555554 34456788888888876542 34332 3334444567778888
Q ss_pred HHHHHHHHhhhhcCCCCCHhHHH-HHHHHHhcc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 293 KAWDIFNAMSGQYGIQPSVEHYA-CMVGVLSRA---RRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 293 ~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
++..+-.....++.-.|-..-|. .+...+.+. -..+.-..++..|.-.--...|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 87766666655544445433332 223333332 34555566666764333456888888888889999988888888
Q ss_pred HHhhC
Q 012234 369 LFEIE 373 (468)
Q Consensus 369 ~~~~~ 373 (468)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 88875
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=80.09 E-value=4.1 Score=21.54 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
|+.+.+..+|+++....|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888889999888888888777766543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.5 bits (168), Expect = 1e-12
Identities = 25/192 (13%), Positives = 58/192 (30%), Gaps = 7/192 (3%)
Query: 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219
L + + P ++ + +L + G + + A
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 220 AKTGFLHGAQRVFDRFKGR-------SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ 272
T L A + G+ +L ++ A++ +A G + V + + + G+
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATE 332
PD +++ A L + Q G++ A ++ RA + +
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 333 FVSKMPVKPSAK 344
+ P
Sbjct: 258 VKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 4e-08
Identities = 21/167 (12%), Positives = 51/167 (30%), Gaps = 12/167 (7%)
Query: 82 ALIGMYAKCGSLDYARALLDEMSDK----DEVSYSAIISGYMVHGFVEKAMDLFQVMKR- 136
L+ SLD +A + S + A ++ + A L V
Sbjct: 97 RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ 156
Query: 137 ------PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL 190
L +NAV+ G + + ++ ++ ++ +G+ P+ ++ ++
Sbjct: 157 RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQD 216
Query: 191 KGG-KEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFK 236
G + + ++ + L +V F
Sbjct: 217 AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 7e-07
Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 12/192 (6%)
Query: 26 KALFREMLNSPVLRPDGVTVVSVLQACGQSSDI---VFGMEVHNFVIESHIKMDLWICNA 82
+ + L +++ + C + + + VH+ + + L + NA
Sbjct: 111 EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170
Query: 83 LIGMYAKCGSLDYARALLDEMSDK----DEVSYSAIISGYMVHG-FVEKAMDLFQVMKRP 137
++ +A+ G+ +L + D D +SY+A + + M +
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230
Query: 138 GLSTWNAVISGLVQNNRHEAVLDLVR----EMQASGVRPNAVTISSIFSLFSHFSNLKGG 193
GL + L+ VL V P V S +
Sbjct: 231 GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY 290
Query: 194 KEIHGYAVKNRY 205
++H +
Sbjct: 291 PKLHLPLKTLQC 302
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.5 bits (98), Expect = 3e-04
Identities = 10/53 (18%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD 57
+ +N+++ G+++ G ++E + + ++ L PD ++ + LQ G+
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAALQCMGRQDQ 215
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 2e-04
Identities = 31/212 (14%), Positives = 71/212 (33%), Gaps = 22/212 (10%)
Query: 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS---LIIWTAIISAYAAHGDASK 258
+ +R++++ A + V D K S L A+H
Sbjct: 31 ERDVERDVFLYRAYLA-------QRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDA 83
Query: 259 AVSLFNEMLNNGIQPDPVTFTAVLSAC-AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317
V+ + ++ + TF + ++ + D A + S+E A
Sbjct: 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD-------SLECMAMT 136
Query: 318 VGVLSRARRISEATEFVSKM----PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE 373
V +L + R+ A + + KM ++ A + A+ ++ ++ + +
Sbjct: 137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196
Query: 374 PENTGNYIIMANLYSQAGRWDEADRVREQMKE 405
A + GRW+ A+ V ++ +
Sbjct: 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 468 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.44 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.43 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.25 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.24 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.24 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.17 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.16 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.15 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.11 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.11 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.09 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.08 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.07 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.03 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.01 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.99 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.99 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.97 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.95 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.94 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.92 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.91 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.9 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.89 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.88 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.88 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.87 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.86 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.86 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.8 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.8 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.8 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.79 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.77 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.76 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.75 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.74 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.72 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.67 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.66 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.65 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.65 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.65 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.65 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.62 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.61 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.59 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.59 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.59 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.56 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.55 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.54 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.52 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.52 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.5 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.48 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.46 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.41 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.41 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.4 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.4 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.38 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.38 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.34 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.34 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.31 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.3 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.3 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.3 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.23 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.2 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.18 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.18 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.12 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.08 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.08 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.07 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.0 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.0 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.99 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.95 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.92 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.91 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.91 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.85 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.66 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.64 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.64 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.57 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.5 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.49 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.43 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.37 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.37 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.27 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.25 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.23 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.18 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.12 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.04 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.79 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.76 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.63 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.57 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.47 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.42 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.41 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.34 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.34 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.16 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.1 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.0 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.49 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.44 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.81 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.76 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.73 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.43 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.76 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.25 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.14 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.75 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.58 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.33 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 92.03 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 91.82 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.71 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.36 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.91 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.31 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.27 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.08 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.86 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.12 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.12 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.03 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.24 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.43 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.0 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.68 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 85.59 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.18 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.08 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 84.96 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 83.98 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.83 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.29 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.6 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 82.33 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 82.17 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=314.12 Aligned_cols=397 Identities=10% Similarity=-0.053 Sum_probs=337.5
Q ss_pred CCCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHH
Q 012234 1 MSKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWIC 80 (468)
Q Consensus 1 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (468)
+|.|++..|+.++..+.+.|++++|+.+|++|. . ..|+..++..++.+|.+.|++++|..+++.+... +++..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 153 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL-D--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACR 153 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHH-h--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHH
Confidence 356788899999999999999999999999998 3 3578889999999999999999999999987653 5688899
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCC-------------------eehHHHHHHHHHhcCCHHHHHHHHhhCCC-----
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKD-------------------EVSYSAIISGYMVHGFVEKAMDLFQVMKR----- 136 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~li~~~~~~~~~~~A~~~~~~~~~----- 136 (468)
+.++.+|.+.|++++|.++|+++...+ ..+|+.++.+|.+.|++++|++.|+++.+
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 233 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999654333 67888999999999888888888876632
Q ss_pred ---------------------------------------------------------------------CCHhHHHHHHH
Q 012234 137 ---------------------------------------------------------------------PGLSTWNAVIS 147 (468)
Q Consensus 137 ---------------------------------------------------------------------~~~~~~~~l~~ 147 (468)
++..+|+.++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 34456777778
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 012234 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHG 227 (468)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 227 (468)
+|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 8888888888888888887654 3466677788888888888888888888887654 5567888899999999999999
Q ss_pred HHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhh
Q 012234 228 AQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304 (468)
Q Consensus 228 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (468)
|..+|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998754 456799999999999999999999999998863 447788999999999999999999999999864
Q ss_pred cCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 305 YGIQPSVEHYACMVGVLSRARRISEATEFVSKM-------PVKPS--AKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
.+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|.+.++++.+.+|+
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 471 --FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 2446889999999999999999999999987 34676 789999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=292.53 Aligned_cols=382 Identities=9% Similarity=-0.010 Sum_probs=334.5
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCC--------------CCCCCcchHHHHHHHhhccCChHHHHHHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSP--------------VLRPDGVTVVSVLQACGQSSDIVFGMEVHNFV 68 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 68 (468)
.+|+.+|+.++.+|.+.|++++|+++|+++.... +.+++..+|+.++.++.+.|++++|.++|++|
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678899999999999999999999999654232 23446789999999999999999999999999
Q ss_pred HHhCCCCchHHHHH--------------------------------------HHHHHHhCCCHHHHHHHHhhcCC--CCe
Q 012234 69 IESHIKMDLWICNA--------------------------------------LIGMYAKCGSLDYARALLDEMSD--KDE 108 (468)
Q Consensus 69 ~~~~~~~~~~~~~~--------------------------------------l~~~~~~~g~~~~A~~~~~~~~~--~~~ 108 (468)
.+.++. +...+.. ++..|.+.|++++|.++|+++.+ ++.
T Consensus 227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 987643 3333333 25566678999999999999988 788
Q ss_pred ehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012234 109 VSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185 (468)
Q Consensus 109 ~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 185 (468)
.+|+.++.+|.+.|++++|..+|+++.+ .+..+++.++.++.+.|++++|..+++++.... +.+..++..++..|.
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 9999999999999999999999999864 466789999999999999999999999998653 567889999999999
Q ss_pred ccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSL 262 (468)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (468)
+.|++++|..+|+.+.+.. +.+..+++.++.+|.+.|++++|+++|+++.+ .+..+|+.++.+|.+.|++++|.++
T Consensus 385 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999865 45677999999999999999999999998764 4678999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc---CCCCC--HhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 263 FNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY---GIQPS--VEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++
T Consensus 464 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 464 LQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99998863 4478899999999999999999999999997642 55676 789999999999999999999999987
Q ss_pred C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 338 P--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 338 ~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
. .+.+..+|..+..+|...|++++|.+.++++.+.+|+++..+..++.+|.
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3 34478999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-29 Score=236.99 Aligned_cols=373 Identities=13% Similarity=0.093 Sum_probs=321.5
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Q 012234 12 MIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG 91 (468)
Q Consensus 12 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 91 (468)
+...+.+.|++++|++.++.+. ... |.+...+..+...+...|++++|...++..++.. +.+..++..+..+|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~-~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLW-RQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 3556778899999999999988 332 3445567777778889999999999999998876 447889999999999999
Q ss_pred CHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCChHHHHHHHHHH
Q 012234 92 SLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNNRHEAVLDLVREM 165 (468)
Q Consensus 92 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m 165 (468)
++++|...|+++.+ | +..+|..+..++.+.|++++|...|+++.+ |+ ...+..+...+...|++++|.+.|+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998764 4 456799999999999999999999998864 44 456788888999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcch
Q 012234 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLII 242 (468)
Q Consensus 166 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~ 242 (468)
.+.. +.+..++..+...+...|++++|...++.+.+.+ +.+...+..+...+...|++++|...|++..+ .+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence 8863 4456788999999999999999999999999876 45567888899999999999999999987654 35678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
+..+..++...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+. .+.+..++..+...+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 8999999999999999999999999863 335778899999999999999999999999864 3557889999999999
Q ss_pred ccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 323 RARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
+.|++++|.+.++++. ..| +..++..+...+...|++++|...++++.+..|.++.++..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999873 344 578999999999999999999999999999999999999999999887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=228.09 Aligned_cols=353 Identities=14% Similarity=0.103 Sum_probs=309.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCH
Q 012234 48 VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFV 124 (468)
Q Consensus 48 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 124 (468)
+...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345667889999999999999988643 667788888999999999999999987664 3567899999999999999
Q ss_pred HHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 012234 125 EKAMDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201 (468)
Q Consensus 125 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (468)
++|+..|+++.+ | +..+|..+..++.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999998864 4 45579999999999999999999999998863 3344567778888999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012234 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278 (468)
Q Consensus 202 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 278 (468)
+.. +.+..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 44577889999999999999999999999865 345678889999999999999999999998752 3357888
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASIS 356 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 356 (468)
..+..++...|++++|...|+++.+. .+.+..++..+...+.+.|++++|.+.|+++. .+.+..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999864 23357789999999999999999999999883 456789999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|++++|...++++.+..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999863
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=237.72 Aligned_cols=183 Identities=15% Similarity=0.138 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------hhhHHHHHHHHHHcCCCCchh
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN---------LKGGKEIHGYAVKNRYDRNIY 210 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 210 (468)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 577899999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (468)
+|+.||.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998874 6888999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR 323 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (468)
+.|++++|.++|++|.+. +..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 999999999999999877 999999999999988875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=236.39 Aligned_cols=178 Identities=12% Similarity=0.176 Sum_probs=130.9
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC---------HHHHHHHHhhcCC----CCeehH
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS---------LDYARALLDEMSD----KDEVSY 111 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~~----~~~~~~ 111 (468)
++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|++|.. ||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 455555555555555555555555555555555555555555554432 4555555555542 455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 012234 112 SAIISGYMVHGFVEKAMDLFQVMK----RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF 187 (468)
Q Consensus 112 ~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 187 (468)
+++|.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 555555555555555666665554 3899999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 012234 188 SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT 222 (468)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (468)
|+.++|.+++++|.+.+..|+..||+.++..++..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998888764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=217.67 Aligned_cols=393 Identities=9% Similarity=-0.020 Sum_probs=318.3
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
...|..+...+.+.|++++|+..|+++. ... |+...|..+..++...|++++|...++.+++.++. +..++..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWAL-ELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-hcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHH
Confidence 4567788899999999999999999998 433 78999999999999999999999999999998743 7788999999
Q ss_pred HHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHH-------------------------------
Q 012234 86 MYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLF------------------------------- 131 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~------------------------------- 131 (468)
++.+.|++++|...|+++... +......++..+........+.+.+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999987642 3333333333333222222211111
Q ss_pred -------hhCCC---------C-CHhHHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCCC--------CCHHHHH
Q 012234 132 -------QVMKR---------P-GLSTWNAVISGLVQ---NNRHEAVLDLVREMQA-----SGVR--------PNAVTIS 178 (468)
Q Consensus 132 -------~~~~~---------~-~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~~~~--------p~~~~~~ 178 (468)
..... | +...+......+.. .|++++|+..++++.. ..-. .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 11110 1 13344445555554 8999999999999987 3112 2345677
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCC
Q 012234 179 SIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGD 255 (468)
Q Consensus 179 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 255 (468)
.+...+...|++++|...++.+.+.... ..++..+..++...|++++|...++++.+ .+..++..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999987644 88888999999999999999999998775 355788999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHH
Q 012234 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVS 335 (468)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 335 (468)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|...++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998863 335678888999999999999999999999864 23356788899999999999999999998
Q ss_pred hCC----CCCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 336 KMP----VKPS----AKVWGALLYGASI---SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 336 ~~~----~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
++. ..++ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 872 2222 4488999999999 9999999999999999999999999999999999999999999999998
Q ss_pred hCC
Q 012234 405 ESG 407 (468)
Q Consensus 405 ~~~ 407 (468)
+..
T Consensus 477 ~~~ 479 (514)
T 2gw1_A 477 DLA 479 (514)
T ss_dssp HHC
T ss_pred Hhc
Confidence 754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=211.30 Aligned_cols=392 Identities=11% Similarity=0.005 Sum_probs=306.5
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
...|..+...+.+.|++++|++.|+++. ... |.+...|..+..++...|++++|.+.++++++.++. +..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAI-ELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-hhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 3567888999999999999999999998 432 457788999999999999999999999999998744 7888999999
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC----------CCHh---------------
Q 012234 86 MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR----------PGLS--------------- 140 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----------~~~~--------------- 140 (468)
++...|++++|...|+.+ ..++......+..+...+...+|...++.+.. |+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 999999999999999744 32222223333344444555666666666543 1111
Q ss_pred ---------------HHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHccCC
Q 012234 141 ---------------TWNAVISGLVQ--------NNRHEAVLDLVREMQASGVRPN--------AVTISSIFSLFSHFSN 189 (468)
Q Consensus 141 ---------------~~~~l~~~~~~--------~g~~~~a~~~~~~m~~~~~~p~--------~~~~~~l~~~~~~~~~ 189 (468)
....+...+.. .|++++|+.+++++.+. .|+ ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 22222222222 24789999999999875 344 2346667778889999
Q ss_pred hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEM 266 (468)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 266 (468)
+++|...+..+.+.. |+...+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999875 4477888899999999999999999998764 45678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--------
Q 012234 267 LNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-------- 338 (468)
Q Consensus 267 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------- 338 (468)
.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++.
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8863 334678888999999999999999999999865 24456788899999999999999999998862
Q ss_pred CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 339 VKPSAKVWGALLYGASIS----------GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.......+..+...+... |++++|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+...
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 112233455566777777 9999999999999999999999999999999999999999999999987553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-24 Score=201.28 Aligned_cols=326 Identities=11% Similarity=0.022 Sum_probs=224.6
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 119 (468)
.+...+..+...+.+.|++++|..+|+.+++..+ .+..++..+..++...|++++|...|+++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 90 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK------------ 90 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 3444555556666666666666666666655532 245555556666666666666666655543210
Q ss_pred hcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHH
Q 012234 120 VHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA----VTISSI------------FSL 183 (468)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------~~~ 183 (468)
..+..++..+..+|.+.|++++|...|+++.+. .|+. ..+..+ ...
T Consensus 91 ----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 91 ----------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344555555555555555555555555543 2222 222222 334
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHH
Q 012234 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAV 260 (468)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 260 (468)
+...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|...|+++.+ .++.+|..++.+|...|++++|.
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666777777777777777654 44566677777778888888888888777653 45677888888888888888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHH------------HHHHhccCCHHHHHHHHHHhhhhcCCCCC-----HhHHHHHHHHHh
Q 012234 261 SLFNEMLNNGIQPD-PVTFTAV------------LSACAHSGLVDKAWDIFNAMSGQYGIQPS-----VEHYACMVGVLS 322 (468)
Q Consensus 261 ~~~~~m~~~~~~p~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~ 322 (468)
..|+++... .|+ ...+..+ ...+...|++++|...|+++.+. .|+ ...+..+...+.
T Consensus 232 ~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~ 306 (450)
T 2y4t_A 232 SEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFS 306 (450)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHH
Confidence 888888764 333 3334333 78889999999999999999864 444 447888899999
Q ss_pred ccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH------------HH
Q 012234 323 RARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL------------YS 388 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~ 388 (468)
+.|++++|+..++++. .+.+..+|..+..+|...|++++|...++++.+..|.++.++..++.+ |.
T Consensus 307 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~ 386 (450)
T 2y4t_A 307 KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386 (450)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGG
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHH
Confidence 9999999999999873 344689999999999999999999999999999999999999988844 44
Q ss_pred HcC-----ChHHHHHHHHH
Q 012234 389 QAG-----RWDEADRVREQ 402 (468)
Q Consensus 389 ~~g-----~~~~A~~~~~~ 402 (468)
..| +.+++.+.+++
T Consensus 387 ~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 387 ILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp GSCSSTTCCTTHHHHHHHH
T ss_pred HhCCCccCCHHHHHHHHHH
Confidence 445 55666777765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=199.34 Aligned_cols=365 Identities=10% Similarity=-0.011 Sum_probs=240.2
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNAL 83 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (468)
.++..|..+...+.+.|++++|+.+|+++. ... +.+..++..+..++...|++++|...++++++.++. +..++..+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 100 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAV-DGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 345678999999999999999999999998 332 467888999999999999999999999999998744 68889999
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCCe------ehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHH
Q 012234 84 IGMYAKCGSLDYARALLDEMSDKDE------VSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEA 157 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (468)
..+|.+.|++++|...|+++.+.++ ..+..++..+.. ..+..+...+...|++++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999876433 455555443111 112222334444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC
Q 012234 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG 237 (468)
Q Consensus 158 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (468)
|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555554432 2334444455555555555555555555554432 23344455555555555555555555554432
Q ss_pred --C-CcchHH------------HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHH
Q 012234 238 --R-SLIIWT------------AIISAYAAHGDASKAVSLFNEMLNNGIQPD-----PVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 238 --~-~~~~~~------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
+ +...+. .++..+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1 112222 2367778888888888888888774 343 34677777888888888888888
Q ss_pred HHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHHcC-----C
Q 012234 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYG------------ASISG-----D 358 (468)
Q Consensus 298 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~------------~~~~g-----~ 358 (468)
++++.+. .+.+...+..+..+|...|++++|...++++ ...| +...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 8887753 1335677888888888888888888888877 3445 35555555532 33334 5
Q ss_pred hHHHHHHHHH-HHhhCCCCcc----------hHHHHHHHHHHcCChHHH
Q 012234 359 VELGKFVCDH-LFEIEPENTG----------NYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 359 ~~~a~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A 396 (468)
.+++.+.+++ +.+..|++.. .+..+..+|...|+.+++
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 6777888886 6666665422 455556666655555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=201.18 Aligned_cols=374 Identities=10% Similarity=-0.019 Sum_probs=297.1
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
.||..+|..+..++.+.|++++|++.|+++. ... |.+...+..+..++...|++++|...|+.+.+.++. +......
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 112 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKAL-ELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF-NDASIEP 112 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-ccchHHH
Confidence 3788899999999999999999999999998 433 455678999999999999999999999999988753 3333334
Q ss_pred HHHHHHhCCCHHHHHHHH--------------------------------------hhcCC---------C-CeehHHHH
Q 012234 83 LIGMYAKCGSLDYARALL--------------------------------------DEMSD---------K-DEVSYSAI 114 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~--------------------------------------~~~~~---------~-~~~~~~~l 114 (468)
++..+........+.+.+ ..... | +...+...
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (514)
T 2gw1_A 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN 192 (514)
T ss_dssp HHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHH
Confidence 444333322222222211 11110 1 13344444
Q ss_pred HHHHHh---cCCHHHHHHHHhhCCC----------------C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 012234 115 ISGYMV---HGFVEKAMDLFQVMKR----------------P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNA 174 (468)
Q Consensus 115 i~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 174 (468)
...+.. .|++++|...|+++.+ | +..++..+...+...|++++|+..++++.+.+ |+.
T Consensus 193 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~ 270 (514)
T 2gw1_A 193 GLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRV 270 (514)
T ss_dssp HHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccH
Confidence 444554 8999999999988654 1 23478888999999999999999999998864 447
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHH
Q 012234 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYA 251 (468)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 251 (468)
..+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+ .+..++..+...+.
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 788899999999999999999999998875 45677888999999999999999999998754 35678889999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhc---c
Q 012234 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSR---A 324 (468)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~ 324 (468)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-.++ ...+..+...+.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999998753 335678888999999999999999999998764222222 3388899999999 9
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 325 RRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 325 ~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
|++++|...++++. .+.+..++..+...+...|++++|...++++.+..|.++..+..+
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999873 344688899999999999999999999999999999988777655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-20 Score=171.72 Aligned_cols=319 Identities=10% Similarity=-0.003 Sum_probs=181.7
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHH
Q 012234 42 GVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGY 118 (468)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 118 (468)
...+..+...+...|++++|...++.+++..+. +..++..+..++...|++++|...|+++.+ | +...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 345566666677777777777777777776533 566666677777777777777777665542 1 233444444444
Q ss_pred HhcCCHHHHHHHHhhCCC--C---C-HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh
Q 012234 119 MVHGFVEKAMDLFQVMKR--P---G-LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKG 192 (468)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~--~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 192 (468)
...|++++|...|+++.+ | + ...+..+...+. ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 444444444444444432 2 1 111111100000 0001111344555556666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012234 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNN 269 (468)
Q Consensus 193 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 269 (468)
|...++.+.+.. +.+..++..+...+...|++++|...++++.+ .+..++..+...+...|++++|...+++..+.
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666655555543 23444555556666666666666666665543 23345666666666666667776666666654
Q ss_pred CCCCCHHHHH------------HHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-H----hHHHHHHHHHhccCChHHHHH
Q 012234 270 GIQPDPVTFT------------AVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-V----EHYACMVGVLSRARRISEATE 332 (468)
Q Consensus 270 ~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~~~~~~A~~ 332 (468)
. +.+...+. .+...+...|++++|...++++.+. .|+ . ..+..+...+...|++++|..
T Consensus 218 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 218 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred C-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 2 11222221 2245566777777777777777654 232 2 223445666777777777777
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 333 FVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 333 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
.+++.. .+.+..++..+...+...|++++|...++++.+.+|+++..+..+..++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 777662 233566777777777777777777777777777777777766666666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-20 Score=168.98 Aligned_cols=303 Identities=14% Similarity=0.075 Sum_probs=214.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHH
Q 012234 77 LWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFVEKAMDLFQVMKR--P-GLSTWNAVISGLV 150 (468)
Q Consensus 77 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 150 (468)
...+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...|+++.+ | +...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44555666666666777777766665543 2344555555555555555555555555432 2 3344555555555
Q ss_pred hCCChHHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 012234 151 QNNRHEAVLDLVREMQASGVRP---N-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226 (468)
Q Consensus 151 ~~g~~~~a~~~~~~m~~~~~~p---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 226 (468)
..|++++|...++++.+. .| + ...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 555555555555555543 22 1 111111111000 011223467889999999
Q ss_pred HHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 012234 227 GAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 227 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
+|...++++.+ .++..+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998764 456788899999999999999999999998863 44678899999999999999999999999986
Q ss_pred hcCCCCCHhHHH------------HHHHHHhccCChHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHHcCChHHHHHH
Q 012234 304 QYGIQPSVEHYA------------CMVGVLSRARRISEATEFVSKMP-VKPS-A----KVWGALLYGASISGDVELGKFV 365 (468)
Q Consensus 304 ~~~~~p~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~----~~~~~l~~~~~~~g~~~~a~~~ 365 (468)
.. +.+...+. .+...+.+.|++++|...++++. ..|+ . ..+..+...+...|++++|...
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 42 22333332 23667889999999999999872 2333 3 3355678899999999999999
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++++.+..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998753
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-20 Score=181.77 Aligned_cols=367 Identities=13% Similarity=0.033 Sum_probs=281.2
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNAL 83 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (468)
.++.+|..+..++.+.|++++|++.|+++. ... |.+..++..+..++...|++++|...|+ .....+.+. ...
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~----~~~ 129 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKAL-EIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD----GAS 129 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC----hHH
Confidence 467889999999999999999999999998 433 4567788999999999999999999996 443322222 122
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCC-------------------------------------Cee---hHHHHHHHHHh---
Q 012234 84 IGMYAKCGSLDYARALLDEMSDK-------------------------------------DEV---SYSAIISGYMV--- 120 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~-------------------------------------~~~---~~~~li~~~~~--- 120 (468)
+..+...+....|...++++... +.. ....+...+..
T Consensus 130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp --CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhh
Confidence 33444445556666666666431 111 22222222222
Q ss_pred -----cCCHHHHHHHHhhCCC--CC--------HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012234 121 -----HGFVEKAMDLFQVMKR--PG--------LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFS 185 (468)
Q Consensus 121 -----~~~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 185 (468)
.|++++|..+|+++.+ |+ ..++..+...+...|++++|+..++++... .|+...+..+...+.
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 2478899999998876 33 235777778899999999999999999986 566788889999999
Q ss_pred ccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSL 262 (468)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (468)
..|+++.|...+..+.+.. +.+..++..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...
T Consensus 288 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999876 45677889999999999999999999998764 4567899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC----CHhHHHHHHHHHhcc----------CChH
Q 012234 263 FNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP----SVEHYACMVGVLSRA----------RRIS 328 (468)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------~~~~ 328 (468)
++++.+.. +.+...+..+...+...|++++|...|+++.+...-.+ ....+..+...+.+. |+++
T Consensus 367 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 445 (537)
T 3fp2_A 367 FNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN 445 (537)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH
Confidence 99998863 34567888899999999999999999999876421111 122244455677777 9999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 012234 329 EATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 329 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
+|...|+++. .+.+...+..+...+...|++++|...++++.+..|.++....
T Consensus 446 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 446 AAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999873 3446889999999999999999999999999999998766543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-18 Score=164.12 Aligned_cols=349 Identities=10% Similarity=-0.013 Sum_probs=161.2
Q ss_pred CcchHHHHHHHhhc----cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----CCCHHHHHHHHhhcCCC-CeehH
Q 012234 41 DGVTVVSVLQACGQ----SSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAK----CGSLDYARALLDEMSDK-DEVSY 111 (468)
Q Consensus 41 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~ 111 (468)
+...+..+...+.. .++++.|..+|++..+.| +...+..|...|.. .++.++|...|++..+. ++..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 33444444444433 455555555555554433 33344444445544 45555555555544332 33444
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 112 SAIISGYMV----HGFVEKAMDLFQVMKR-PGLSTWNAVISGLVQ----NNRHEAVLDLVREMQASGVRPNAVTISSIFS 182 (468)
Q Consensus 112 ~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 182 (468)
..|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|+..|++..+.| +...+..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 444444444 4455555555554432 233344444444444 445555555555554432 3334444444
Q ss_pred HHHc----cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhhccC-CCcchHHHHHHHHHH-
Q 012234 183 LFSH----FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK----TGFLHGAQRVFDRFKG-RSLIIWTAIISAYAA- 252 (468)
Q Consensus 183 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~- 252 (468)
.|.. .++.++|...++...+.+ +...+..+...|.. .+++++|..+|++..+ .++.++..+...|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Confidence 4444 455555555555554433 23334444444443 4455555555554433 223344444444444
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhcc
Q 012234 253 ---HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS-----GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA 324 (468)
Q Consensus 253 ---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 324 (468)
.+++++|+.+|++..+.| +...+..+...+... +++++|...|++..+. .+...+..+...|...
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRL 341 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhC
Confidence 455555555555544432 223333344444433 4555555555554432 1223344444444433
Q ss_pred C---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----cCCh
Q 012234 325 R---RISEATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ----AGRW 393 (468)
Q Consensus 325 ~---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 393 (468)
| ++++|+++|++.....++..+..+...|.. .+++++|...++++.+.+ ++..+..|+.+|.+ .+++
T Consensus 342 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 3 445555555544222344445555555544 455555555555554432 34445555555554 4555
Q ss_pred HHHHHHHHHHHhCC
Q 012234 394 DEADRVREQMKESG 407 (468)
Q Consensus 394 ~~A~~~~~~m~~~~ 407 (468)
++|...|++..+.+
T Consensus 420 ~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 420 VQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
Confidence 55555555554444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-20 Score=171.26 Aligned_cols=293 Identities=13% Similarity=0.015 Sum_probs=184.9
Q ss_pred CCCHHHHHH-HHhhcCCC-------CeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHH
Q 012234 90 CGSLDYARA-LLDEMSDK-------DEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAV 158 (468)
Q Consensus 90 ~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 158 (468)
.|++++|.. .|++...- +...+..+...+.+.|++++|...|+++.+ .+..++..+..++...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 55543321 233455555555555555555555555432 2333455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012234 159 LDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR 238 (468)
Q Consensus 159 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (468)
+..++++.+.+ +.+..++..+..++...|++++|...++.+.+..... ...+..+... .. ...
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-------~~-------~~~- 180 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEG-------AG-------GAG- 180 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC-------------------------
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH-------hh-------hhc-
Confidence 55555554432 2234444555555555555555555555554433111 1111000000 00 000
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHH
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACM 317 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 317 (468)
....+..+... ...|++++|...++++.+.... ++..++..+...+...|++++|...++++.+. .+.+...+..+
T Consensus 181 ~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l 257 (368)
T 1fch_A 181 LGPSKRILGSL-LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKL 257 (368)
T ss_dssp -----CTTHHH-HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHH-hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 00011122333 3889999999999999875322 14788889999999999999999999998864 23457889999
Q ss_pred HHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----------cchHHHHH
Q 012234 318 VGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN-----------TGNYIIMA 384 (468)
Q Consensus 318 ~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~ 384 (468)
...+...|++++|+..|+++. .+.+..++..+...+...|++++|...++++.+..|.+ ..+|..++
T Consensus 258 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 258 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence 999999999999999999873 34468899999999999999999999999999998877 78999999
Q ss_pred HHHHHcCChHHHHHHHHH
Q 012234 385 NLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~ 402 (468)
.+|...|++++|..++++
T Consensus 338 ~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 338 LALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHTCGGGHHHHHTT
T ss_pred HHHHHhCChHhHHHhHHH
Confidence 999999999999998764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-19 Score=162.79 Aligned_cols=249 Identities=13% Similarity=0.081 Sum_probs=151.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (468)
+..++.++...|++++|..+++++.+.. +.+...+..+...+...| ++++|...++.+.+.. +.+...+..+...+.
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3334444444455555555555544431 223334444444445555 4555555555544433 223344455555555
Q ss_pred hcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
..|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 55555555555555432 233455556666777777777777777766642 33456667777777777777777777
Q ss_pred HHHhhhhcC-------CCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012234 298 FNAMSGQYG-------IQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDH 368 (468)
Q Consensus 298 ~~~~~~~~~-------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 368 (468)
++++.+... .+.....+..+...|...|++++|...+++.. .+.+...+..+...+...|++++|...+++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 777664311 12335677777778888888888888877762 233567778888888888888888888888
Q ss_pred HHhhCCCCcchHHHHHHHHH-HcCCh
Q 012234 369 LFEIEPENTGNYIIMANLYS-QAGRW 393 (468)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~~~-~~g~~ 393 (468)
+.+..|+++..+..++.++. ..|+.
T Consensus 296 al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 296 ALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHccCCCchHHHHHHHHHHHHHhCch
Confidence 88888888888888888773 44543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-17 Score=160.02 Aligned_cols=351 Identities=9% Similarity=-0.036 Sum_probs=295.3
Q ss_pred CcchHHHHHHHHhc----CCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhc----cCChHHHHHHHHHHHHhCCCCc
Q 012234 5 DIVSWNSMIAGYSQ----GGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQ----SSDIVFGMEVHNFVIESHIKMD 76 (468)
Q Consensus 5 ~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 76 (468)
|+.++..|...|.. .+++++|+..|+... +. .+...+..+...+.. .++.++|..+|++..+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAA-EQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 56677778888887 899999999999998 43 356677788888877 899999999999998876 5
Q ss_pred hHHHHHHHHHHHh----CCCHHHHHHHHhhcCCC-CeehHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHH
Q 012234 77 LWICNALIGMYAK----CGSLDYARALLDEMSDK-DEVSYSAIISGYMV----HGFVEKAMDLFQVMKR-PGLSTWNAVI 146 (468)
Q Consensus 77 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~ 146 (468)
...+..|..+|.. .+++++|...|++..+. ++.++..|...|.. .++.++|...|++..+ .+...+..+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6677788888988 88999999999987664 66788888888887 8899999999998764 5677888899
Q ss_pred HHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012234 147 SGLVQ----NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH----FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218 (468)
Q Consensus 147 ~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (468)
..|.. .+++++|+.+|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+..+
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 99988 899999999999998865 55677777777775 789999999999998865 45566778888
Q ss_pred HHh----cCChHHHHHHHhhccC-CCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 012234 219 YAK----TGFLHGAQRVFDRFKG-RSLIIWTAIISAYAAH-----GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288 (468)
Q Consensus 219 ~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (468)
|.. .+++++|..+|++..+ .++.++..+...|... +++++|...|++..+.| +...+..+...+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 887 8999999999999876 4567788888888887 89999999999999875 455667777777765
Q ss_pred C---CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 012234 289 G---LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----ARRISEATEFVSKMPVKPSAKVWGALLYGASI----SG 357 (468)
Q Consensus 289 ~---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 357 (468)
| +.++|...|++..+. .++..+..|...|.. .+++++|.++|++.....++..+..|...|.. .+
T Consensus 342 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 6 889999999999864 467788888888888 89999999999988544578889999999988 89
Q ss_pred ChHHHHHHHHHHHhhCCC
Q 012234 358 DVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~ 375 (468)
+.++|...|+++.+.+|+
T Consensus 418 d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCC
Confidence 999999999999999875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-19 Score=160.48 Aligned_cols=265 Identities=10% Similarity=-0.024 Sum_probs=228.8
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHH
Q 012234 137 PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216 (468)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 216 (468)
.+...+..++..+...|++++|+.+++++.+.. +.+...+..++.++...|++++|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455667788888999999999999999998764 4455566778888999999999999999999875 45677888899
Q ss_pred HHHHhcC-ChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 012234 217 DTYAKTG-FLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD 292 (468)
Q Consensus 217 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 292 (468)
..+...| ++++|...|++..+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998775 345689999999999999999999999998863 334566777899999999999
Q ss_pred HHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHHcCChHH
Q 012234 293 KAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-----------VKPSAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 293 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~ 361 (468)
+|...++++.+. .+.+...+..+...+...|++++|...++++. .+....++..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999853 24467889999999999999999999998772 13346789999999999999999
Q ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 362 GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|...++++.+..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999887653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-17 Score=160.10 Aligned_cols=391 Identities=9% Similarity=0.053 Sum_probs=288.0
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALI 84 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (468)
|..+|..++. +.+.|++++|..+|+++. .. .|.+...|...+..+.+.|+++.|..+|+++++.. |+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al-~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLV-AQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHH-TT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHH-HH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 5678999998 478899999999999998 43 35567789999999999999999999999999875 4677777776
Q ss_pred HHH-HhCCCHHHHHH----HHhhcCC------CCeehHHHHHHHHHh---------cCCHHHHHHHHhhCCC-CCH---h
Q 012234 85 GMY-AKCGSLDYARA----LLDEMSD------KDEVSYSAIISGYMV---------HGFVEKAMDLFQVMKR-PGL---S 140 (468)
Q Consensus 85 ~~~-~~~g~~~~A~~----~~~~~~~------~~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~-~~~---~ 140 (468)
... ...|+.+.|.+ +|++... ++...|...+....+ .|++++|..+|++..+ |.. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45677776655 6665421 345677777776654 6889999999999875 332 2
Q ss_pred HHHHHHHHH-------------HhCCChHHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHHc----
Q 012234 141 TWNAVISGL-------------VQNNRHEAVLDLVREMQ------ASG---VRPNA--------VTISSIFSLFSH---- 186 (468)
Q Consensus 141 ~~~~l~~~~-------------~~~g~~~~a~~~~~~m~------~~~---~~p~~--------~~~~~l~~~~~~---- 186 (468)
.|....... ...+++..|..++.... +.. ++|+. ..|...+.....
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333322211 12356777777776632 221 34442 233333322222
Q ss_pred cCCh----hhHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCChH-------HHHHHHhhccC---C-CcchHH
Q 012234 187 FSNL----KGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-------TGFLH-------GAQRVFDRFKG---R-SLIIWT 244 (468)
Q Consensus 187 ~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~~~~~ 244 (468)
.++. ..+..+|+.++... +.+..++..++..+.+ .|+++ +|..+|++..+ | +...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 1232 36778888888864 5567788888888775 69987 89999998774 2 456888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHH-
Q 012234 245 AIISAYAAHGDASKAVSLFNEMLNNGIQPD-P-VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGV- 320 (468)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~- 320 (468)
.++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+. .| +...|......
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHH
Confidence 9999999999999999999999985 454 2 57888888888999999999999999853 34 33333332222
Q ss_pred HhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc----hHHHHHHHHHHcCChH
Q 012234 321 LSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG----NYIIMANLYSQAGRWD 394 (468)
Q Consensus 321 ~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 394 (468)
+...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|+++....|.++. .|...+......|+.+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34689999999999977 2334 6889999999999999999999999999998776655 7778888888899999
Q ss_pred HHHHHHHHHHhC
Q 012234 395 EADRVREQMKES 406 (468)
Q Consensus 395 ~A~~~~~~m~~~ 406 (468)
.+..+.+++.+.
T Consensus 481 ~~~~~~~r~~~~ 492 (530)
T 2ooe_A 481 SILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-18 Score=163.88 Aligned_cols=366 Identities=11% Similarity=0.000 Sum_probs=237.9
Q ss_pred CCCcchHHHHHHHhhccCChHHHHHHHHHHHHh-----C---CCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC-----
Q 012234 39 RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES-----H---IKMDLWICNALIGMYAKCGSLDYARALLDEMSD----- 105 (468)
Q Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 105 (468)
+.....|+.+...+...|+.++|++.|++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567888888999999999999999987653 1 122356788899999999999999988876542
Q ss_pred --C----CeehHHHHHHHHHhc--CCHHHHHHHHhhCCC--CC-HhHHHHHHHH---HHhCCChHHHHHHHHHHHHCCCC
Q 012234 106 --K----DEVSYSAIISGYMVH--GFVEKAMDLFQVMKR--PG-LSTWNAVISG---LVQNNRHEAVLDLVREMQASGVR 171 (468)
Q Consensus 106 --~----~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~--~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~ 171 (468)
+ ...++..+..++... +++++|+..|++..+ |+ ...+..+..+ +...++.++|++.+++.++.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 234566665555544 468999999988764 43 4444444443 455688888999998887753 3
Q ss_pred CCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHH
Q 012234 172 PNAVTISSIFSLFSH----FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWT 244 (468)
Q Consensus 172 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~ 244 (468)
.+...+..+...+.. .++.+.|...++...... +.+..++..+...|...|++++|...|++..+ .+..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 345555555544443 467788999998888765 45667788899999999999999999988765 2345566
Q ss_pred HHHHHHHHc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc
Q 012234 245 AIISAYAAH-------------------GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305 (468)
Q Consensus 245 ~l~~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (468)
.+..+|... +.++.|...+++..+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~- 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK- 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 665554322 33567788888777642 234456777888999999999999999998854
Q ss_pred CCCCCH--hHHHHHHH-HHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 012234 306 GIQPSV--EHYACMVG-VLSRARRISEATEFVSKM-PVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 306 ~~~p~~--~~~~~l~~-~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
...|.. ..+..+.. .+...|++++|+..|++. .+.|+...... ....+..++++..+.+|+++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHH
Confidence 222211 12233332 235778999999999876 35665433222 234556778888889999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEE
Q 012234 382 IMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWI 417 (468)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 417 (468)
.|+.+|...|++++|++.|++.++.+-......+|+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999998776544445553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-19 Score=163.95 Aligned_cols=258 Identities=11% Similarity=-0.003 Sum_probs=177.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYA 220 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (468)
.+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555555432 2344455555555555555555555555555543 233445555555555
Q ss_pred hcCChHHHHHHHhhccCCC-------------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh
Q 012234 221 KTGFLHGAQRVFDRFKGRS-------------LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACA 286 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~ 286 (468)
..|++++|...|+++.+.+ ...+..+...+...|++++|...++++.+.... ++..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 6666666666555544311 123345577888899999999999999886322 15788889999999
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHH
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKF 364 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~ 364 (468)
..|++++|...|+++.+. .+.+..++..+...|...|++++|+..|+++. ..| +..++..+..+|...|++++|..
T Consensus 225 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999864 24467889999999999999999999999873 334 58899999999999999999999
Q ss_pred HHHHHHhhCCC------------CcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 365 VCDHLFEIEPE------------NTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 365 ~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
.++++.+..|. +..++..++.++...|+.+.+.++.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999998765 367899999999999999998887654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-19 Score=158.80 Aligned_cols=345 Identities=11% Similarity=0.005 Sum_probs=149.6
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Q 012234 18 QGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYAR 97 (468)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 97 (468)
+.|+.++|.+.++++. . | .+|..++.++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-~----~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-E----P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-C----h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4577888888888774 2 3 48888888888888888888888542 46678888888888888888888
Q ss_pred HHHhhcCC--CCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 012234 98 ALLDEMSD--KDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV 175 (468)
Q Consensus 98 ~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 175 (468)
.+++...+ +++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ .
T Consensus 82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 87776654 3556788888888888888888877753 77778888888888888888888888866 2
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCC
Q 012234 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGD 255 (468)
Q Consensus 176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (468)
.|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 5788888888888888888888877 257788888888888888888877766654 444445567888888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC------CHhHHHHHHHHHhccCChHH
Q 012234 256 ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP------SVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~ 329 (468)
+++|..+++...... +.....|+.+...|++- ++++..+.++...++-+++| +...|..++..|...++++.
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 999998888876543 33455666666666553 33333333333333324444 45678888888888899988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHH
Q 012234 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVRE 401 (468)
Q Consensus 330 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 401 (468)
|....-+-+ |+..-.........+..+.+--.+...-.++.. |..++.|..++...=+...+.++++
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~---p~~l~~ll~~l~~~ld~~r~v~~~~ 367 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFK---PLLLNDLLMVLSPRLDHTRAVNYFS 367 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC---GGGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCcHHHHHHHH
Confidence 887665542 222222222233334444433333322222222 2345555555544444444444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-17 Score=145.47 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=204.6
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCH----hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 012234 116 SGYMVHGFVEKAMDLFQVMKRPGL----STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLK 191 (468)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 191 (468)
+-....|++..|+..++.....++ .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 334556777777777766554322 2345566778888888888776543 1 3556667777777778888888
Q ss_pred hHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012234 192 GGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNG 270 (468)
Q Consensus 192 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 270 (468)
+|.+.++.+...+..| +...+..+..++...|++++|++.+++ ..+..++..++..+.+.|++++|...|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 8888888877766433 455666777889999999999999998 566778889999999999999999999999886
Q ss_pred CCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCHHH
Q 012234 271 IQPDPVTF---TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PV-KPSAKV 345 (468)
Q Consensus 271 ~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~ 345 (468)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++ .. +.++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3553211 22334455669999999999999975 3567888999999999999999999999987 33 446889
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHH
Q 012234 346 WGALLYGASISGDVEL-GKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 346 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 400 (468)
+..++..+...|+.++ +.++++++.+.+|+++.+. +...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 9999999999999976 6789999999999987543 4566666676665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=164.44 Aligned_cols=281 Identities=12% Similarity=0.116 Sum_probs=82.6
Q ss_pred hCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 012234 89 KCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS 168 (468)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 168 (468)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 344555555555555332 35555555555555555555555432 34445555555555555555555544444432
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHH
Q 012234 169 GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIIS 248 (468)
Q Consensus 169 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 248 (468)
.+++.+.+.++.+|.+.|+++++.++++ .|+..++..++..|...|++++|..+|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 3334445555555555555555555443 244445555555555555555555555544 24555555
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChH
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRIS 328 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 328 (468)
++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCCCHH
Confidence 555555555555555554 145555555555555555555533332211 12222334555555555555
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCC-----CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 329 EATEFVSKM-PV-KPSAKVWGALLYGASIS--GDVELGKFVCDHLFEIEP-----ENTGNYIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 329 ~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 399 (468)
+|..+++.. +. +-....|+-|..++++- ++..+.++.|..-....| .+...|..+.-.|.+-++++.|...
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 555555544 21 12244444444444332 223333333332222223 3455566666666666666655553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-18 Score=158.01 Aligned_cols=295 Identities=11% Similarity=-0.011 Sum_probs=185.8
Q ss_pred HhhccCChHHHHH-HHHHHHHhCCC---CchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCC
Q 012234 51 ACGQSSDIVFGME-VHNFVIESHIK---MDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGF 123 (468)
Q Consensus 51 ~~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 123 (468)
++...|+++.|.. .+++..+..+. .+...+..+...+...|++++|...|+++.+ .+..+|..+...+...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4556788999988 87766554321 1345677899999999999999999998864 356789999999999999
Q ss_pred HHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhhHHHHHHH
Q 012234 124 VEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV-TISSIFSLFSHFSNLKGGKEIHGY 199 (468)
Q Consensus 124 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 199 (468)
+++|...|+++.+ .+..++..+...+...|++++|+..++++.... |+.. .+..+.. ...
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~-------~~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEE-------GAG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHH-------Hhh-------
Confidence 9999999998764 467789999999999999999999999999864 3322 2211100 000
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--C---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012234 200 AVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--R---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274 (468)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 274 (468)
...+ ......+...+ ..|++++|...|+++.+ | +..++..+...+...|++++|...++++.... +.+
T Consensus 178 ----~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 ----GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ----hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0000 00011122222 55566666666655543 2 24456666666666777777777776666542 234
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CC------------C
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VK------------P 341 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~------------~ 341 (468)
...+..+...+...|++++|...|+++.+. .+.+...+..+...|.+.|++++|...|+++. .. .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 556666677777777777777777776643 12345666667777777777777777776651 11 1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLF 370 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 370 (468)
...+|..+..++...|+.++|..++++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 25677778888888888888777766443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-17 Score=156.94 Aligned_cols=364 Identities=10% Similarity=0.025 Sum_probs=264.8
Q ss_pred CCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCeehHHHHHH
Q 012234 39 RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD--KDEVSYSAIIS 116 (468)
Q Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 116 (468)
|-+...|..++.. .+.|+++.|..+|+.+++..+ .+...|..++..+.+.|++++|..+|++... |+...|..++.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3467788888884 778999999999999998753 4788899999999999999999999999886 56566766664
Q ss_pred HH-HhcCCHHHHHH----HHhhCC-----C-CCHhHHHHHHHHHHh---------CCChHHHHHHHHHHHHCCCCCCHHH
Q 012234 117 GY-MVHGFVEKAMD----LFQVMK-----R-PGLSTWNAVISGLVQ---------NNRHEAVLDLVREMQASGVRPNAVT 176 (468)
Q Consensus 117 ~~-~~~~~~~~A~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~ 176 (468)
.. ...|+.++|.+ +|+... . ++...|...+..... .|++++|..+|++.++....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 35677777665 666542 1 345678887776655 6889999999999987311111223
Q ss_pred HHHHHHHH-------------HccCChhhHHHHHHHHH------HcC---CCCc--------hhHHHHHHHHHHhc----
Q 012234 177 ISSIFSLF-------------SHFSNLKGGKEIHGYAV------KNR---YDRN--------IYVATAIIDTYAKT---- 222 (468)
Q Consensus 177 ~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~---- 222 (468)
|....... ...+++..|..++.... +.. ++|+ ...+...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 32222111 12345667777766532 111 2333 13444444332221
Q ss_pred CCh----HHHHHHHhhccC---CCcchHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHH
Q 012234 223 GFL----HGAQRVFDRFKG---RSLIIWTAIISAYAA-------HGDAS-------KAVSLFNEMLNNGIQPDPVTFTAV 281 (468)
Q Consensus 223 g~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~l 281 (468)
++. +.+..+|++... .++..|..++..+.+ .|+++ +|..+|++..+.-.+.+...+..+
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 222 367778887664 456788888888775 69987 899999998863223357788889
Q ss_pred HHHHhccCCHHHHHHHHHHhhhhcCCCCC-H-hHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHH-HHHc
Q 012234 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPS-V-EHYACMVGVLSRARRISEATEFVSKMP-VKPS-AKVWGALLYG-ASIS 356 (468)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~-~~~~ 356 (468)
+..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++.. ..|. ...|...+.. +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc
Confidence 99999999999999999999853 554 2 578888999999999999999999873 3332 3333333333 3468
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..+|++....+
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999998874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-18 Score=154.01 Aligned_cols=271 Identities=9% Similarity=-0.011 Sum_probs=177.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 110 SYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 110 ~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
.+..+...+...|++++|..+|+++.+ .+...+..+..++...|++++|...++++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 344445555555555555555554432 233344455555555555555555555554432 2233444444444555
Q ss_pred cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHH-HH-HHHHcCChHHHHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAI-IS-AYAAHGDASKAVSLFN 264 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~a~~~~~ 264 (468)
.|++++|...++.+.+.... +...+..+.... ++......+ .. .+...|++++|...++
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------CCTTSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 55555555555444443211 111111110000 000000111 22 3667788999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCC
Q 012234 265 EMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPS 342 (468)
Q Consensus 265 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~ 342 (468)
++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++. .+.+
T Consensus 163 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 163 AALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 988763 346788888999999999999999999998864 23457788899999999999999999998872 3446
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------------CcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPE------------NTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
..++..+...+...|++++|...++++.+..|. ++.++..++.+|.+.|++++|..++++.
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 889999999999999999999999999999988 6889999999999999999999987654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-16 Score=155.32 Aligned_cols=348 Identities=14% Similarity=0.093 Sum_probs=268.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCCC--CCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 012234 10 NSMIAGYSQGGFYEECKALFREMLNSPVL--RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMY 87 (468)
Q Consensus 10 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (468)
...+++|...|.+.+|++++++.. ..+- .-+...-+.++....+. +..+..+..+..-.. + ...+...+
T Consensus 989 s~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 456788889999999999999987 3321 11223344566555555 555555555544311 1 34477788
Q ss_pred HhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 012234 88 AKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQA 167 (468)
Q Consensus 88 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 167 (468)
...|.+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|+..|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 889999999999998742 111222222 27788999999999774 4678889999999999999999999663
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHH
Q 012234 168 SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAII 247 (468)
Q Consensus 168 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 247 (468)
.|...|..++.+|.+.|++++|.+.+....+.. +++.+.+.++.+|++.+++++...+. ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 466788889999999999999999999888765 33334446999999999988655443 455667788899
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCCh
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI 327 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 327 (468)
..|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +..+|..+..+|...|++
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHH
Confidence 9999999999999999884 378889999999999999999998763 457899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc--CChHHHHHHHH
Q 012234 328 SEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA--GRWDEADRVRE 401 (468)
Q Consensus 328 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 401 (468)
..|......+ ..++..+..++..|...|.+++|+.+++..+.++|.+...|..|+.+|++- ++..++.++|.
T Consensus 1267 ~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999887764 445666778999999999999999999999999999999998888888875 45556666554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-18 Score=157.97 Aligned_cols=259 Identities=13% Similarity=-0.024 Sum_probs=190.8
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHH
Q 012234 41 DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISG 117 (468)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 117 (468)
+...+..+...+.+.|++++|...|+++++..+. +..++..+..+|...|++++|+..|++..+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4555777777777788888888888888777633 667777788888888888888888877653 346677777788
Q ss_pred HHhcCCHHHHHHHHhhCCC--CC-----------HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 012234 118 YMVHGFVEKAMDLFQVMKR--PG-----------LSTWNAVISGLVQNNRHEAVLDLVREMQASGVR-PNAVTISSIFSL 183 (468)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~ 183 (468)
|...|++++|+..|+++.+ |+ ...+..+...+...|++++|+..++++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 8888888888888877654 11 123344577888889999999999998876321 157788888888
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHH
Q 012234 184 FSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAV 260 (468)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 260 (468)
+...|++++|...++.+.+.. +.+..++..+..+|...|++++|+..|++..+ .+..++..+..+|...|++++|.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999888875 45677888899999999999999999988764 34678888899999999999999
Q ss_pred HHHHHHHHCCCC-----------CCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 012234 261 SLFNEMLNNGIQ-----------PDPVTFTAVLSACAHSGLVDKAWDIFNAM 301 (468)
Q Consensus 261 ~~~~~m~~~~~~-----------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (468)
..|+++.+.... .+...+..+..++...|+.+.+..+..+-
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999988763211 12567888889999999999888877654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-17 Score=146.48 Aligned_cols=247 Identities=11% Similarity=0.079 Sum_probs=204.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 012234 146 ISGLVQNNRHEAVLDLVREMQASGVRPNA--VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223 (468)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 223 (468)
++-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999999876543 4443 3556678999999999999986644 23567778888999999999
Q ss_pred ChHHHHHHHhhccC----C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 012234 224 FLHGAQRVFDRFKG----R-SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298 (468)
Q Consensus 224 ~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (468)
+.++|++.++++.. | ++..+..+..++...|++++|+..+++ +.+...+..++..+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 3 455677788999999999999999987 457788889999999999999999999
Q ss_pred HHhhhhcCCCCCHhHH---HHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 012234 299 NAMSGQYGIQPSVEHY---ACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE 373 (468)
Q Consensus 299 ~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 373 (468)
+++.+. .|+.... ..++..+...|++++|..+|+++. .+.+...++.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999865 4653211 223345556699999999999983 45678999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Q 012234 374 PENTGNYIIMANLYSQAGRWDE-ADRVREQMKESG 407 (468)
Q Consensus 374 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 407 (468)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 578999887754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.2e-17 Score=153.41 Aligned_cols=365 Identities=11% Similarity=-0.029 Sum_probs=240.1
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhC-------CCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCC-----
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNS-------PVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHI----- 73 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 73 (468)
...||.|...+...|++++|++.|++..+- ..-+....+|..+..++...|++++|...++++.+...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456999999999999999999999887521 11123356788999999999999999999998876421
Q ss_pred -C-CchHHHHHHHHHHHhC--CCHHHHHHHHhhcCC--C-CeehHHHHHHH---HHhcCCHHHHHHHHhhCCC---CCHh
Q 012234 74 -K-MDLWICNALIGMYAKC--GSLDYARALLDEMSD--K-DEVSYSAIISG---YMVHGFVEKAMDLFQVMKR---PGLS 140 (468)
Q Consensus 74 -~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~---~~~~ 140 (468)
. ....++..+..++... +++++|+..|++..+ | ++..+..+..+ +...++.++|++.|++..+ .+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 1 1345666666666554 579999999998764 4 45556555554 3456778888888887653 3455
Q ss_pred HHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHH
Q 012234 141 TWNAVISGLVQ----NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216 (468)
Q Consensus 141 ~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 216 (468)
++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 66666555544 467889999999988764 5566788889999999999999999999999875 44556666666
Q ss_pred HHHHhc-------------------CChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012234 217 DTYAKT-------------------GFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD 274 (468)
Q Consensus 217 ~~~~~~-------------------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 274 (468)
.+|... +.++.|...|++..+ .+..++..+...+...|++++|+..|++..+....|.
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 665432 235667777776543 4567899999999999999999999999988654433
Q ss_pred HH--HHHHHHH-HHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHH
Q 012234 275 PV--TFTAVLS-ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-P-VKPSAKVWGAL 349 (468)
Q Consensus 275 ~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l 349 (468)
.. .+..+.. .....|+.++|+..|++..+ +.|+........ ..+.+++++. . .+.+..+|..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 22 2222322 24577999999999999884 356543332222 2233333332 1 24467899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 384 (468)
...+...|++++|++.|+++++.+|.+|.+...++
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999988887766554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=149.04 Aligned_cols=275 Identities=11% Similarity=-0.059 Sum_probs=177.9
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALI 84 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (468)
+...|..+...+...|++++|+.+|+++.+. . +.+...+..+...+...|++++|...++++.+..+ .+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA-A-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHH
Confidence 4556677777888888888888888887732 2 34566777777778888888888888888877753 3666777778
Q ss_pred HHHHhCCCHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHH--HHHhCCChHHHH
Q 012234 85 GMYAKCGSLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVIS--GLVQNNRHEAVL 159 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~ 159 (468)
.++...|++++|...|+++.+. +...+..+.... ++......+.. .+...|++++|.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------CCTTSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 8888888888888887766532 122222220000 00111111112 245556666677
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--
Q 012234 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-- 237 (468)
Q Consensus 160 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 237 (468)
..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.+
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6666666543 3345566666666667777777777776666654 33455666677777777777777777776543
Q ss_pred -CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 238 -RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-----------DPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 238 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
.+..++..+...+...|++++|...++++....... +...+..+..++...|++++|..++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345667777888888888888888888877642221 35677788888888888888888887654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-15 Score=148.69 Aligned_cols=287 Identities=13% Similarity=0.113 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCC
Q 012234 77 LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNR 154 (468)
Q Consensus 77 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 154 (468)
..+|..+..++...|++++|.+.|.+. .|...|..++..+.+.|++++|.+.|....+ +++...+.++.+|.+.++
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 344445555555555555555555432 3444455555555555555555555544332 222222234455555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 012234 155 HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234 (468)
Q Consensus 155 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 234 (468)
+++...+. . .++...+..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44322221 1 233344444555555555555555555543 2445555555555555555555554
Q ss_pred ccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhH
Q 012234 235 FKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEH 313 (468)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 313 (468)
. .+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++... ++.+ ....
T Consensus 1247 A--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gm 1316 (1630)
T 1xi4_A 1247 A--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGM 1316 (1630)
T ss_pred h--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHH
Confidence 4 3335555555555555555555544332 22345556677788888888888888887776 4444 3445
Q ss_pred HHHHHHHHhcc--CChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------
Q 012234 314 YACMVGVLSRA--RRISEATEFVSKM-PVKP------SAKVWGALLYGASISGDVELGKFVCDHLFEI------------ 372 (468)
Q Consensus 314 ~~~l~~~~~~~--~~~~~A~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------ 372 (468)
|+-|..+|.+. ++..++.++|..- .++| +...|..++..|.+.|+++.|....-+-...
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 66666666543 4555666655433 3333 4677888888899999998887332221111
Q ss_pred CCCCcchHHHHHHHHHHcC
Q 012234 373 EPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 373 ~~~~~~~~~~l~~~~~~~g 391 (468)
.+.|+..|...+..|...+
T Consensus 1397 kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred ccccHHHHHHHHHHHHhhC
Confidence 4567777777777777666
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-15 Score=132.22 Aligned_cols=228 Identities=10% Similarity=0.022 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC--chhHHHHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR--NIYVATAIID 217 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 217 (468)
..+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+..... +..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 355666666666677777777776666654 555566666666666666666666665555422100 000
Q ss_pred HHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012234 218 TYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 218 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
....++..+...+...|++++|...|+++... .|+. ..+...|++++|...
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHH
Confidence 00245666677777778888888888777764 3443 235556778888888
Q ss_pred HHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 298 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
++++... .+.+...+..+...+...|++++|...++++. .+.+..++..+...+...|++++|+..++++.+..|+
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 8887752 12245677788888888888999888888772 3446788888999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++.++..++.+|.+.|++++|...+++..+..
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998887643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=7e-16 Score=134.41 Aligned_cols=235 Identities=9% Similarity=0.018 Sum_probs=168.2
Q ss_pred eehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 012234 108 EVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQASG--VRPN----AVTISS 179 (468)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~~ 179 (468)
...|..+...+...|++++|+..|++..+ .+...+..+..++...|++++|+..+++..+.. ..|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34678889999999999999999988653 667789999999999999999999999988742 1122 466777
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHH
Q 012234 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKA 259 (468)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (468)
+..++...|++++|...++.+.+.. |+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHHH
Confidence 7777778888888888877777643 221 223444556666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-
Q 012234 260 VSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP- 338 (468)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 338 (468)
...++++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|...+++..
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666665541 223445666666777777777777777777653 13345667777777777777777777777662
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCcchHHHHHH
Q 012234 339 -VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE------PENTGNYIIMAN 385 (468)
Q Consensus 339 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 385 (468)
.+.+...|..+...+...|++++|...++++.+.. |.+..++..+..
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 23357778888888888888888888888888887 766666655544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=129.24 Aligned_cols=194 Identities=11% Similarity=0.017 Sum_probs=151.4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 282 (468)
+++...+..+...+.+.|++++|...|++..+. ++..+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455666777788888888888888888877653 44677888888888999999999998888753 33567778888
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHH
Q 012234 283 SACAHS-----------GLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGAL 349 (468)
Q Consensus 283 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l 349 (468)
.++... |++++|...+++..+. .| +...+..+...+...|++++|+..|++.. ...+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999999864 45 57788889999999999999999999872 12788999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
..++...|++++|+..++++++.+|+++.++..++.++.+.|++++|++.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.6e-16 Score=145.49 Aligned_cols=378 Identities=9% Similarity=-0.016 Sum_probs=246.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCCh---HHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 012234 11 SMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDI---VFGMEVHNFVIESHIKMDLWICNALIGMY 87 (468)
Q Consensus 11 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (468)
.+...+.+.|++++|+++|++.. +.+ +...+..+...+...|+. ++|..+|++..+. +...+..+..++
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa-~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLA-ELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 35677788899999999999987 433 344455555666667777 8999999988764 444556666655
Q ss_pred HhCC-----CHHHHHHHHhhcCCC-CeehHHHHHHHHHhcCCHHH---HHHHHhhCCC-CCHhHHHHHHHHHHhCCChHH
Q 012234 88 AKCG-----SLDYARALLDEMSDK-DEVSYSAIISGYMVHGFVEK---AMDLFQVMKR-PGLSTWNAVISGLVQNNRHEA 157 (468)
Q Consensus 88 ~~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~---A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 157 (468)
...| +.++|...|++..++ ++..+..|...|...+..++ +.+.+..... .+...+..|...|...+.+++
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 5555 788999999987764 56688888888887665444 4444443332 456677788888888886655
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----CChHHHHH
Q 012234 158 VLDLVREMQASGVRPNAVTISSIFSLFSHFS---NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT----GFLHGAQR 230 (468)
Q Consensus 158 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~ 230 (468)
+......+...-...+...+..+...|...| +.++|...|+...+.| +++...+..|..+|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 5554333322211223337778888888899 8999999999999887 44555546677777665 78999999
Q ss_pred HHhhccCCCcchHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhh
Q 012234 231 VFDRFKGRSLIIWTAIISA-Y--AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG-----LVDKAWDIFNAMS 302 (468)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~ 302 (468)
+|++....++..+..+... + ...+++++|+.+|++..+.| +...+..+...|. .| ++++|...|++..
T Consensus 239 ~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 239 LLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 9998874455677777776 4 46889999999999998876 5666666776666 55 8999999998876
Q ss_pred hhcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 012234 303 GQYGIQPSVEHYACMVGVLSR----ARRISEATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 303 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 374 (468)
..++..+..|...|.. ..++++|..+|++.....+......|...|.. ..+.++|...++++.+.++
T Consensus 315 -----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 -----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 2356677777777766 44899999999987534455566667776664 4588999999999988875
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 375 ENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+........+......++..+|.++.++..+.
T Consensus 390 ~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 390 PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 44332222222223344677787777776553
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-17 Score=161.46 Aligned_cols=123 Identities=11% Similarity=0.158 Sum_probs=109.8
Q ss_pred ehHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 109 VSYSAIISGYMVHGFVEKAMDLFQVMK-------RPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIF 181 (468)
Q Consensus 109 ~~~~~li~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 181 (468)
.+|++||++|++.|++++|.++|..|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 479999999999999999999997753 4999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCh-hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 012234 182 SLFSHFSNL-KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231 (468)
Q Consensus 182 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 231 (468)
.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999985 78999999999999999999999998776665444333333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-17 Score=160.75 Aligned_cols=150 Identities=8% Similarity=0.035 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQA---SGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAII 216 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 216 (468)
.+||+||.+|++.|+.++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 5899999999999999999999988764 4789999999999999999999999999999999999999988888777
Q ss_pred HHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 012234 217 DTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWD 296 (468)
Q Consensus 217 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 296 (468)
.++++.|+ ..++|.++|++|.+.|+.||..+|++++..+.+ +.+++
T Consensus 208 ~glcK~G~------------------------------~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~ 253 (1134)
T 3spa_A 208 QCMGRQDQ------------------------------DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLK 253 (1134)
T ss_dssp HHHHHHTC------------------------------CHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHH
T ss_pred HHHHhCCC------------------------------cHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHH
Confidence 66655443 246788999999999999999999988865544 34555
Q ss_pred HHHHhhhhcCCCCC------HhHHHHHHHHHhccC
Q 012234 297 IFNAMSGQYGIQPS------VEHYACMVGVLSRAR 325 (468)
Q Consensus 297 ~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~ 325 (468)
.++++.. ++.|+ ..+...|.+.|.+.+
T Consensus 254 ~Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 254 AVHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 5555543 44443 444555667776655
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-15 Score=140.37 Aligned_cols=344 Identities=10% Similarity=-0.043 Sum_probs=239.3
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH---HHHHHHHhhcCCCCeehHHHHHHHHHhcC--
Q 012234 48 VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL---DYARALLDEMSDKDEVSYSAIISGYMVHG-- 122 (468)
Q Consensus 48 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 122 (468)
+...+.+.|++++|.++|++..+.| +...+..+..+|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 5566778899999999999998887 333445566777778888 99999999988778888888888666655
Q ss_pred ---CHHHHHHHHhhCCCC-CHhHHHHHHHHHHhCCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHH
Q 012234 123 ---FVEKAMDLFQVMKRP-GLSTWNAVISGLVQNNRHE---AVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKE 195 (468)
Q Consensus 123 ---~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 195 (468)
++++|...|++..++ +...+..|...|...+..+ ++.+.+......| +......+...|...+.++++..
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 788999999987653 3447777888888776544 4555555555444 34456667777888887666665
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcC---ChHHHHHHHhhccCCCc-c--hHHHHHHHHHHc----CChHHHHHHHHH
Q 012234 196 IHGYAVKNRYDRNIYVATAIIDTYAKTG---FLHGAQRVFDRFKGRSL-I--IWTAIISAYAAH----GDASKAVSLFNE 265 (468)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~-~--~~~~l~~~~~~~----g~~~~a~~~~~~ 265 (468)
....+.+.-...++..+..|..+|...| +.++|+..|++..+.+. . .+..+...|... +++++|+.+|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 5444444333444558888999999999 99999999998765433 2 336677777554 799999999999
Q ss_pred HHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccC-----ChHHHHHHHHhC
Q 012234 266 MLNNGIQPDPVTFTAVLSA-C--AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR-----RISEATEFVSKM 337 (468)
Q Consensus 266 m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~ 337 (468)
.. .| +...+..+... + ...+++++|...|++..+. | +...+..|...|. .| ++++|.++|++.
T Consensus 243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 87 33 44455555555 3 5689999999999998864 3 6667777887777 55 999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHhCCCC
Q 012234 338 PVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ----AGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 338 ~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 409 (468)
. ..++..+..|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. ..+.++|...++...+.|..
T Consensus 314 a-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 314 V-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp T-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred h-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 8 7788888888887776 349999999999988754 56788899999985 45899999999999988863
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-15 Score=129.67 Aligned_cols=240 Identities=11% Similarity=-0.055 Sum_probs=173.5
Q ss_pred CCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHH
Q 012234 152 NNRHEAVLDLVREMQASGV---RPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGA 228 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 228 (468)
.|++++|+..++++.+... +.+..++..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4667777777777766421 1134456666677777777777777777777654 34566677777777888888888
Q ss_pred HHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc
Q 012234 229 QRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY 305 (468)
Q Consensus 229 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (468)
...|++..+ .+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888777654 34567888888899999999999999998875 344444444555556779999999999887764
Q ss_pred CCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 306 GIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS-----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 306 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
.+++...+ .++..+...++.++|...+.+.. ..|+ ..++..+...+...|++++|...++++.+.+|.+...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23444444 36777788888899999988763 2222 5788889999999999999999999999999877544
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~ 400 (468)
+ +.++...|++++|++-+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 3 66788889999988766
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=6e-15 Score=129.69 Aligned_cols=243 Identities=11% Similarity=0.021 Sum_probs=125.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhc
Q 012234 145 VISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRN--IYVATAIIDTYAKT 222 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 222 (468)
....+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3444445555555555555554432 11222444444455555555555555555544221111 11244455555555
Q ss_pred CChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012234 223 GFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299 (468)
Q Consensus 223 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (468)
|++++|+..|++..+ .+..++..+...|...|++++|...+++..+. .+.+...+..+...+...+++++|...|+
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554432 23345555555555566666666655555443 12233444444412223346666666666
Q ss_pred HhhhhcCCCCCHhHHHHHHHHHhccCC---hHHHHHHHHhCC----CCCC------HHHHHHHHHHHHHcCChHHHHHHH
Q 012234 300 AMSGQYGIQPSVEHYACMVGVLSRARR---ISEATEFVSKMP----VKPS------AKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 300 ~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
++.+. .+.+...+..+...+...|+ +++|...+++.. ..|+ ..+|..+...+...|++++|...+
T Consensus 167 ~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 167 KVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66543 12234455555555555555 545555554441 1122 246777788888889999999999
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 367 DHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
+++.+.+|+++.+...+.......+
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999988887777766655443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=120.82 Aligned_cols=225 Identities=8% Similarity=-0.036 Sum_probs=133.2
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCchhHHH
Q 012234 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH----FSNLKGGKEIHGYAVKNRYDRNIYVAT 213 (468)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 213 (468)
+..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~- 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC- 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH-
Confidence 4455666666777777777777777776662 233455555555555 666666666666655543 33344
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA----HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-- 287 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 287 (468)
..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 78 ------------------------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 78 ------------------------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp ------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred ------------------------------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 444444444 555555555555555543 44455555555555
Q ss_pred --cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 012234 288 --SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----ARRISEATEFVSKMPVKPSAKVWGALLYGASI----SG 357 (468)
Q Consensus 288 --~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 357 (468)
.+++++|...|++..+. + +...+..+...|.. .+++++|+.+|++.....+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 56666666666665542 2 33445555555555 56666666666655322345566666666666 67
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHhCCC
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQ----AGRWDEADRVREQMKESGL 408 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 408 (468)
++++|...++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.|.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77777777777766654 4566677777777 7777777777777766553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-14 Score=129.66 Aligned_cols=245 Identities=10% Similarity=0.061 Sum_probs=191.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSN-LKGGKEIHGYAVKNRYDRNIYVATAIIDT 218 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (468)
..|+.+...+.+.|++++|+..+++.+... +-+...|..+..++...|+ +++|...++.+++.. +.+..++..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 467777788888888888888888888753 3355677778888888886 888888888888876 4466778888888
Q ss_pred HHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHH
Q 012234 219 YAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH-SGLVDKA 294 (468)
Q Consensus 219 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a 294 (468)
+...|++++|+..|+++.+ .+..+|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 8888888888888888764 455788888888999999999999999988863 2357788888888888 5554666
Q ss_pred -----HHHHHHhhhhcCCCC-CHhHHHHHHHHHhccC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC--------
Q 012234 295 -----WDIFNAMSGQYGIQP-SVEHYACMVGVLSRAR--RISEATEFVSKMPVKP-SAKVWGALLYGASISG-------- 357 (468)
Q Consensus 295 -----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g-------- 357 (468)
+..+++.... .| +...|..+...+...| ++++|++.+.++...| +...+..++..+...|
T Consensus 255 ~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 4778887753 44 5678888888888887 6889998888775444 5678888888888764
Q ss_pred C-hHHHHHHHHHH-HhhCCCCcchHHHHHHHHHHc
Q 012234 358 D-VELGKFVCDHL-FEIEPENTGNYIIMANLYSQA 390 (468)
Q Consensus 358 ~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 390 (468)
+ .++|+++++++ .+.+|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899998888888888776543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-13 Score=119.53 Aligned_cols=230 Identities=10% Similarity=-0.061 Sum_probs=158.8
Q ss_pred CeehHHHHHHHHHhcCCHHHHHHHHhhCCCC-CHhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRP-GLSTWNAVISGLVQ----NNRHEAVLDLVREMQASGVRPNAVTISSIF 181 (468)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 181 (468)
++.++..+...+...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667888999999999999999999988764 45678889999999 999999999999999876 677888888
Q ss_pred HHHHc----cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChH
Q 012234 182 SLFSH----FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDAS 257 (468)
Q Consensus 182 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (468)
..+.. .+++++|...++...+.+ +...+..+...|.... ...++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCHH
Confidence 88888 899999999998887764 4444555555554400 0045555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc----cCChHH
Q 012234 258 KAVSLFNEMLNNGIQPDPVTFTAVLSACAH----SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----ARRISE 329 (468)
Q Consensus 258 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~ 329 (468)
+|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. .+...+..+...|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 5555555555543 33444445555554 56666666666666542 234455556666666 666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCC
Q 012234 330 ATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 330 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 376 (468)
|++.|++.....+...+..+...+.. .+++++|...++++.+.+|++
T Consensus 205 A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 205 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 66666655312235566666777776 777888888888887777654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-14 Score=119.77 Aligned_cols=194 Identities=15% Similarity=0.079 Sum_probs=114.2
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHH
Q 012234 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIID 217 (468)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 217 (468)
+...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...++.+.+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455666666666777777777776666542 3345556666666666666666666666666654 334455555666
Q ss_pred HHHhc-----------CChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 218 TYAKT-----------GFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283 (468)
Q Consensus 218 ~~~~~-----------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 283 (468)
++... |++++|+..|++..+ .+...+..+..++...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 666677666666543 234556666667777777777777777776654 46666666777
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
++...|++++|...|+++.+. .+.+...+..+...+.+.|++++|+..+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777776643 1224556666666777777777777666654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=131.78 Aligned_cols=244 Identities=14% Similarity=0.002 Sum_probs=145.7
Q ss_pred hcCCChhHHHHHHHHhhhCCCC---CCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 012234 17 SQGGFYEECKALFREMLNSPVL---RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 93 (468)
...|++++|++.|+++. .... +.+...+..+...+...|++++|...++++++..+. +..++..+..++...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQIL-ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 34566677777777766 3210 112445566666666667777777777666665432 555666666666666666
Q ss_pred HHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 012234 94 DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173 (468)
Q Consensus 94 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 173 (468)
++|...|++..+. ...+..++..+..++...|++++|...++++.+. .|+
T Consensus 94 ~~A~~~~~~al~~----------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~ 143 (275)
T 1xnf_A 94 DAAYEAFDSVLEL----------------------------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPN 143 (275)
T ss_dssp HHHHHHHHHHHHH----------------------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHhc----------------------------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCC
Confidence 6666666544320 0123456666667777777777777777776664 344
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC-------cchHHHH
Q 012234 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS-------LIIWTAI 246 (468)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l 246 (468)
.......+..+...|++++|...+....... +++...+ .++..+...++.++|...+.+....+ ..++..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 221 (275)
T 1xnf_A 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL 221 (275)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHH
Confidence 4344444444555677777777776666543 2333333 35666666777777777777766533 3567777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 012234 247 ISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298 (468)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (468)
...+...|++++|...|++.... .|+. +.....++...|++++|...+
T Consensus 222 a~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 222 GKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 88888888888888888888765 3422 122244556677777777665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.2e-14 Score=120.58 Aligned_cols=196 Identities=11% Similarity=0.016 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 012234 210 YVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286 (468)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (468)
..+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 3445566666666777777666666543 244566777777777888888888887777653 335667777777788
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHH
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
..|++++|..+++++.+. +..| +...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888887751 2344 45667777778888888888888887762 2335777888888888888888888
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
..++++.+..|.+...+..++.++...|++++|.++++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88888888888888888888888888888888888888887654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-13 Score=118.69 Aligned_cols=207 Identities=12% Similarity=0.014 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (468)
..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------- 102 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------- 102 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c-------------
Confidence 345555666666666666666666665542 2234444445555555555555555555544432 1
Q ss_pred HhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 012234 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-DPVTFTAVLSACAHSGLVDKAWDIF 298 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (468)
.+...+..+...+...|++++|..+++++...+..| +...+..+...+...|++++|...+
T Consensus 103 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 103 ------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp ------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233455566666677777777777777766532334 3456667777778888888888888
Q ss_pred HHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-P-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 299 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
+++.+. .+.+...+..+...+...|++++|...++++ . .+.+...+..+...+...|+.++|.+.++++.+..|++
T Consensus 165 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 165 EKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 887754 1334667777888888888888888888776 2 33456778888888889999999999999999998887
Q ss_pred cchHH
Q 012234 377 TGNYI 381 (468)
Q Consensus 377 ~~~~~ 381 (468)
+....
T Consensus 243 ~~~~~ 247 (252)
T 2ho1_A 243 LEYQE 247 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-13 Score=121.25 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=187.3
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC--CCcc----hHHHHHHH
Q 012234 176 TISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RSLI----IWTAIISA 249 (468)
Q Consensus 176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~~ 249 (468)
.+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|+..+++..+ ++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34566778899999999999999999875 34556788899999999999999999998776 2332 48889999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (468)
+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998863 335678889999999999999999999999853 23356677777734444569999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhC---CCC-----cchHHHHHHHHHHcCChHHH
Q 012234 330 ATEFVSKMP-VKP-SAKVWGALLYGASISGD---VELGKFVCDHLFEIE---PEN-----TGNYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 330 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~A 396 (468)
|.+.|+++. ..| +...+..+...+...|+ +++|...++++.+.. |+. ..+|..++.+|.+.|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999883 334 57888888889988888 888999999998874 432 25788899999999999999
Q ss_pred HHHHHHHHhCC
Q 012234 397 DRVREQMKESG 407 (468)
Q Consensus 397 ~~~~~~m~~~~ 407 (468)
.+.+++..+..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=123.99 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 3344444444445555555554444431 223344444445555555555555555554432 1223344444444445
Q ss_pred ccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 012234 323 RARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 384 (468)
+.|++++|...++++. .+.+..++..+...+...|++++|...++++.+..|+++.++..+.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 5555555555444431 1223444455555555555555555555555555555544444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-14 Score=122.96 Aligned_cols=197 Identities=9% Similarity=0.082 Sum_probs=155.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (468)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344566677777888888888888887765 345678888889999999999999999988763 3467888889999
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELG 362 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 362 (468)
+...|++++|...++++.+. .+.+...+..+...+.+.|++++|...++++. .+.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999864 24467788899999999999999999999873 345688999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+..++++.+..|.++.++..++.+|...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=116.88 Aligned_cols=196 Identities=9% Similarity=0.034 Sum_probs=140.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC 285 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (468)
..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33445555566666666666666665443 234566667777777778888888777776652 33566777777788
Q ss_pred hcc-CCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHH
Q 012234 286 AHS-GLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 286 ~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 361 (468)
... |++++|...++++.+. +..|+ ...+..+...+...|++++|+..++++. .+.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 8888888888887752 23343 5667777778888888888888887762 23357778888888888888888
Q ss_pred HHHHHHHHHhhCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 362 GKFVCDHLFEIEP-ENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 362 a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|...++++.+..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888888 78888888888888888888888888887654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=134.84 Aligned_cols=262 Identities=12% Similarity=0.019 Sum_probs=164.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhhHHHHHHHHHHc----C-CCCchhHHHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQASGVRPNA----VTISSIFSLFSHFSNLKGGKEIHGYAVKN----R-YDRNIYVATAI 215 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 215 (468)
+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...++.+.+. + .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3444555555555555555555432 1111 23444455555555555555555544432 1 01122344555
Q ss_pred HHHHHhcCChHHHHHHHhhccCC---------CcchHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHC
Q 012234 216 IDTYAKTGFLHGAQRVFDRFKGR---------SLIIWTAIISAYAAHGD-----------------ASKAVSLFNEMLNN 269 (468)
Q Consensus 216 ~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~m~~~ 269 (468)
...|...|++++|...+++..+. ...++..+...|...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55666666666666665554321 12356666677777777 77777777665432
Q ss_pred ----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC--
Q 012234 270 ----GIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP-- 338 (468)
Q Consensus 270 ----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 338 (468)
+..+ ....+..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 2346677778888888888888888887653111111 2367778888889999999988887762
Q ss_pred --CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 339 --VKP----SAKVWGALLYGASISGDVELGKFVCDHLFEIEPE------NTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 339 --~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
... ...++..+...+...|++++|...++++.+..+. ...++..++.+|.+.|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111 1567788888999999999999999998887432 2347888999999999999999999988764
Q ss_pred C
Q 012234 407 G 407 (468)
Q Consensus 407 ~ 407 (468)
.
T Consensus 373 ~ 373 (411)
T 4a1s_A 373 A 373 (411)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.9e-14 Score=130.44 Aligned_cols=129 Identities=16% Similarity=0.008 Sum_probs=62.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC----CCCC----HH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP----VKPS----AK 344 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~ 344 (468)
++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++.. ..++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 3444455555555555555555554432110111 1244455555555555555555555431 0111 33
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------cchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPEN------TGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++..+...+...|++++|...++++.+..+.. ..++..++.+|.+.|++++|.+.+++..+
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555566666665555555542211 33455555556666666666655555433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-13 Score=113.97 Aligned_cols=209 Identities=10% Similarity=0.002 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (468)
..+..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++.+.+.. +
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~------------- 73 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-P------------- 73 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C-------------
Confidence 455666666666666666666666665542 2334455555555555555555555555554432 1
Q ss_pred HhcCChHHHHHHHhhccCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 012234 220 AKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH-GDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDI 297 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 297 (468)
.+..++..+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...
T Consensus 74 ------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 74 ------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp ------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334455566666667 777777777777766322333 45666677777778888888888
Q ss_pred HHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 298 FNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VK-PSAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 298 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
++++.+. .+.+...+..+...+.+.|++++|...++++. .+ .+...+..+...+...|+.+.+...++.+.+..|
T Consensus 136 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 136 LKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 8777753 12346677777778888888888888887762 23 4566777777778888899999998888888888
Q ss_pred CCcchHHHH
Q 012234 375 ENTGNYIIM 383 (468)
Q Consensus 375 ~~~~~~~~l 383 (468)
+++.....+
T Consensus 214 ~~~~~~~~l 222 (225)
T 2vq2_A 214 YSEELQTVL 222 (225)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 877665443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.7e-14 Score=126.00 Aligned_cols=263 Identities=15% Similarity=0.054 Sum_probs=172.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhhHHHHHHHHHHc----CCC-CchhHHHH
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASGVRPN----AVTISSIFSLFSHFSNLKGGKEIHGYAVKN----RYD-RNIYVATA 214 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 214 (468)
.....+...|++++|+..++++.+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 33445556666666666666655542 112 234455555566666666666665554432 111 12334555
Q ss_pred HHHHHHhcCChHHHHHHHhhccC-----CC----cchHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKG-----RS----LIIWTAIISAYAAHGD--------------------ASKAVSLFNE 265 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~ 265 (468)
+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66666667777777766665442 11 1256667777777777 7788777776
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHh
Q 012234 266 MLNN----GIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSK 336 (468)
Q Consensus 266 m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 336 (468)
.... +..| ....+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 1111 1346777788888899999999988887643111111 33677788888999999999998887
Q ss_pred CC----CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------cchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 337 MP----VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPEN------TGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 337 ~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
.. ..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|.+.|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 62 1122 5677888889999999999999999998874322 34788999999999999999999999
Q ss_pred HHhCC
Q 012234 403 MKESG 407 (468)
Q Consensus 403 m~~~~ 407 (468)
..+..
T Consensus 329 a~~~~ 333 (338)
T 3ro2_A 329 HLEIS 333 (338)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 87743
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-13 Score=125.47 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhhccC---CCcchHHHHHHHH
Q 012234 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGF-LHGAQRVFDRFKG---RSLIIWTAIISAY 250 (468)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~~ 250 (468)
..|..+...+...|++++|...++.+++.. +.+..++..+..++...|+ +++|+..|+++.. .+..+|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467777888899999999999999999876 5567788899999999997 9999999999875 4567899999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhc-cCChH
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSR-ARRIS 328 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~~~~~ 328 (468)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+. .| +...|+.+..++.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999863 336788999999999999999999999999964 44 67889999999998 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC--------
Q 012234 329 EA-----TEFVSKM-PVKP-SAKVWGALLYGASISG--DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG-------- 391 (468)
Q Consensus 329 ~A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 391 (468)
+| ++.|++. ...| +...|..+...+...| ++++|++.+.++ +.+|+++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777766 3344 6789999999998888 689999999998 888999999999999999975
Q ss_pred -ChHHHHHHHHHH-Hh
Q 012234 392 -RWDEADRVREQM-KE 405 (468)
Q Consensus 392 -~~~~A~~~~~~m-~~ 405 (468)
.+++|+++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 54
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-13 Score=110.47 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=140.6
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHH
Q 012234 239 SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMV 318 (468)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 318 (468)
+..+|..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45578888888889999999999999888753 335678888888999999999999999888764 233566777778
Q ss_pred HHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHH
Q 012234 319 GVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 396 (468)
..+...++++.|...+.+.. .+.+...+..+...+...|++++|++.++++.+.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88889999999999888773 3446788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 012234 397 DRVREQMKESG 407 (468)
Q Consensus 397 ~~~~~~m~~~~ 407 (468)
++.+++.++..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999988753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-13 Score=124.85 Aligned_cols=304 Identities=9% Similarity=0.001 Sum_probs=186.1
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD---LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIIS 116 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 116 (468)
+....+......+...|++++|...++++++..+... ..++..+..++...|++++|...|++.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------- 73 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD------------- 73 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------
Confidence 3444555666677778888888888888877653311 245667777888888888888776543
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC
Q 012234 117 GYMVHGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV-RPN----AVTISSIFSLFSHFSN 189 (468)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~ 189 (468)
+.+...... ....++..+...+...|++++|+..+++..+... .++ ..++..+...+...|+
T Consensus 74 -----------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 74 -----------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 222222221 1133566677777777888887777777654210 011 2244455555555555
Q ss_pred --------------------hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC--CcchHHHHH
Q 012234 190 --------------------LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--SLIIWTAII 247 (468)
Q Consensus 190 --------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~ 247 (468)
++.|...+....+. +.....+ ...++..+.
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la 194 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLG 194 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHH
Confidence 44444444333221 1111000 012455566
Q ss_pred HHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHH
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNG-IQPD----PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMV 318 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 318 (468)
..+...|++++|...+++..+.. -.++ ..++..+...+...|++++|...+++......-.++ ..++..+.
T Consensus 195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp HHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 66667777777777776664320 0111 235666777777888888888888776542111111 45667777
Q ss_pred HHHhccCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCcchHHHHH
Q 012234 319 GVLSRARRISEATEFVSKMP----VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIE------PENTGNYIIMA 384 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~ 384 (468)
..|...|++++|...+++.. ..++ ..++..+...+...|++++|...++++.+.. +....++..++
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 354 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLS 354 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 88888888888888887662 1122 5577888889999999999999999988773 22345677888
Q ss_pred HHHHHcCChHH
Q 012234 385 NLYSQAGRWDE 395 (468)
Q Consensus 385 ~~~~~~g~~~~ 395 (468)
.++...|+...
T Consensus 355 ~~~~~~g~~~~ 365 (406)
T 3sf4_A 355 DLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHhhHhHH
Confidence 88888887643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=130.97 Aligned_cols=191 Identities=8% Similarity=-0.036 Sum_probs=152.9
Q ss_pred chhHHHHHHHHHHhcCCh-HHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 208 NIYVATAIIDTYAKTGFL-HGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 283 (468)
+...+..+...|...|++ ++|+..|++..+ .+..+|..+..+|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 344444555555555555 555555555432 23456777888888888899999999888875 567788888888
Q ss_pred HHhcc---------CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhcc--------CChHHHHHHHHhCC-CCC----
Q 012234 284 ACAHS---------GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA--------RRISEATEFVSKMP-VKP---- 341 (468)
Q Consensus 284 ~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~-~~~---- 341 (468)
.+... |++++|...|+++.+. .+.+...|..+..+|... |++++|++.|++.. ..|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 9999999999998864 133577888888888888 89999999998873 344
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
+...|..+..++...|++++|.+.|+++.+.+|+++.++..++.++...|++++|++.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7889999999999999999999999999999999999999999999999999999975433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-13 Score=123.60 Aligned_cols=277 Identities=13% Similarity=0.051 Sum_probs=163.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHh
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESHIKMDL----WICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMV 120 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 120 (468)
+..+...+...|++++|...++++++.++. +. .++..+..+|...|++++|...|++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------------- 112 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD----------------- 112 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------
Confidence 344555666777777787777777776433 22 35666777777777777777766543
Q ss_pred cCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHccCC----
Q 012234 121 HGFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS----GV-RPNAVTISSIFSLFSHFSN---- 189 (468)
Q Consensus 121 ~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~~---- 189 (468)
+.+.+.... ....++..+...|...|++++|+..+++.... +- .....++..+...+...|+
T Consensus 113 -------l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 185 (411)
T 4a1s_A 113 -------LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185 (411)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccc
Confidence 222222211 12345667777777888888888877776542 10 1112344555555555555
Q ss_pred -------------hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC--CcchHHHHHHHHHHcC
Q 012234 190 -------------LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--SLIIWTAIISAYAAHG 254 (468)
Q Consensus 190 -------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g 254 (468)
+++|...+.+..+. ......+ ...++..+...+...|
T Consensus 186 ~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g 237 (411)
T 4a1s_A 186 RNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLG 237 (411)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 44444444433221 1111000 1124555566666666
Q ss_pred ChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC----CHhHHHHHHHHHhccC
Q 012234 255 DASKAVSLFNEMLNNGI-QPD----PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP----SVEHYACMVGVLSRAR 325 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~ 325 (468)
++++|...+++..+... .++ ...+..+...+...|++++|...+++......-.. ...++..+...|...|
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLH 317 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 66666666666544210 011 23566677777777888887777776654211011 1456677777788888
Q ss_pred ChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 326 RISEATEFVSKMP----VKP----SAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 326 ~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
++++|...+++.. ..+ ...++..+...+...|++++|...++++.+..+
T Consensus 318 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 318 EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 8888888777652 011 144677788888899999999999999888764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=121.43 Aligned_cols=158 Identities=9% Similarity=0.025 Sum_probs=81.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC------chhHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQAS----GVRP-NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR------NIYVAT 213 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 213 (468)
....+...|++++|+..+++.... +-.+ ...++..+...+...|+++.|...+....+..... ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777776553 1111 12355556666666666666666666555421110 122444
Q ss_pred HHHHHHHhcCChHHHHHHHhhccC-----CCc----chHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKG-----RSL----IIWTAIISAYAAHGDASKAVSLFNEMLNN----GI-QPDPVTFT 279 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~ 279 (468)
.+...|...|++++|...|++..+ .+. .++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 455555555555555555554332 111 24555555555566666666555555441 12 11234455
Q ss_pred HHHHHHhccCCHHHHHHHHHHhh
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
.+...+...|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555566666655555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-13 Score=123.75 Aligned_cols=226 Identities=10% Similarity=-0.025 Sum_probs=173.9
Q ss_pred HHHHHHccCChhhHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCChHHHHHHHhhccC-----CC-----cchHH
Q 012234 180 IFSLFSHFSNLKGGKEIHGYAVKN----RYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRFKG-----RS-----LIIWT 244 (468)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~ 244 (468)
....+...|++++|...++.+.+. +-.+ ...++..+...|...|++++|...+.+..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999999874 1111 346778899999999999999999887653 11 24788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhhc---CC-CCCHhHHH
Q 012234 245 AIISAYAAHGDASKAVSLFNEMLNNGI-QPD----PVTFTAVLSACAHSGLVDKAWDIFNAMSGQY---GI-QPSVEHYA 315 (468)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~ 315 (468)
.+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998865311 112 2478889999999999999999999887511 22 22456788
Q ss_pred HHHHHHhccCChHHHHHHHHhCC------CCCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 316 CMVGVLSRARRISEATEFVSKMP------VKPS-AKVWGALLYGASISGD---VELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 316 ~l~~~~~~~~~~~~A~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
.+...|.+.|++++|.+.+++.. ..|. ...+..+...+...|+ +++|..++++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 89999999999999999998762 1222 2335667778888888 77777777765 222445567889999
Q ss_pred HHHHcCChHHHHHHHHHHHhC
Q 012234 386 LYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+|...|++++|...+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-12 Score=116.84 Aligned_cols=278 Identities=9% Similarity=0.008 Sum_probs=147.8
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhc
Q 012234 45 VVSVLQACGQSSDIVFGMEVHNFVIESHIKMD---LWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVH 121 (468)
Q Consensus 45 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 121 (468)
+......+...|++++|...++++++..+... ..++..+..++...|++++|...+++..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------- 70 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL----------------- 70 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence 33444556667777777777777777643311 3456667777777777777777765432
Q ss_pred CCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC-----
Q 012234 122 GFVEKAMDLFQVMKR--PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGV-RPN----AVTISSIFSLFSHFSN----- 189 (468)
Q Consensus 122 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~----- 189 (468)
.+...... ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 71 -------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (338)
T 3ro2_A 71 -------TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 143 (338)
T ss_dssp -------HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred -------HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccc
Confidence 11111111 1123455666666677777777776666543210 011 1244445555555555
Q ss_pred ---------------hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC--CcchHHHHHHHHHH
Q 012234 190 ---------------LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR--SLIIWTAIISAYAA 252 (468)
Q Consensus 190 ---------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~ 252 (468)
++.|...+...... ......+ ...++..+...+..
T Consensus 144 ~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 144 GPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp SCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHH
Confidence 44444444333221 0000000 01234444455555
Q ss_pred cCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhc
Q 012234 253 HGDASKAVSLFNEMLNN----GIQP-DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSR 323 (468)
Q Consensus 253 ~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~ 323 (468)
.|++++|...+++..+. +..+ ...++..+...+...|++++|...+++......-.++ ..++..+...|..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 55555555555554331 0000 1224555666666667777666666665432110111 3455666677777
Q ss_pred cCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 324 ARRISEATEFVSKMP----VKP----SAKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
.|++++|...+++.. ..+ ...++..+...+...|++++|...++++.+..+
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 777777777766551 011 134666777788888888888888888877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-11 Score=108.57 Aligned_cols=218 Identities=12% Similarity=0.085 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------ccCCh-------hhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 012234 156 EAVLDLVREMQASGVRPNAVTISSIFSLFS-------HFSNL-------KGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221 (468)
Q Consensus 156 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (468)
++|...|++.+... +.+...|..++..+. ..|+. ++|..+|+..++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666666666542 334445555544443 24554 6666666666663113344566666666666
Q ss_pred cCChHHHHHHHhhccCC---Ccc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 012234 222 TGFLHGAQRVFDRFKGR---SLI-IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC-AHSGLVDKAWD 296 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~~---~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 296 (468)
.|++++|..+|+++.+. +.. +|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777665542 222 56667777777777777777777776643 22333333332221 12577777777
Q ss_pred HHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 297 IFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP----VKP--SAKVWGALLYGASISGDVELGKFVCDHLF 370 (468)
Q Consensus 297 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 370 (468)
+|++..+.. +.+...|..++..+.+.|++++|..+|++.. .+| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777776542 2345667777777777777777777777662 133 35567777777777777777777777777
Q ss_pred hhCCCCc
Q 012234 371 EIEPENT 377 (468)
Q Consensus 371 ~~~~~~~ 377 (468)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-10 Score=112.58 Aligned_cols=399 Identities=8% Similarity=0.010 Sum_probs=228.3
Q ss_pred CCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCC---hHHHHHHHHHHHHhCC-CCchHH
Q 012234 4 RDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD---IVFGMEVHNFVIESHI-KMDLWI 79 (468)
Q Consensus 4 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~ 79 (468)
-|..+|..++..+.+.+.++.+..+|+.+... .|.+...|...+..-.+.++ .+.+.++|+..+...+ +|+...
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 46788999999999999999999999999843 45667778888888788888 9999999999888652 467778
Q ss_pred HHHHHHHHHhCCCH--------HHHHHHHhhcC------CC-CeehHHHHHHHHH---------hcCCHHHHHHHHhhCC
Q 012234 80 CNALIGMYAKCGSL--------DYARALLDEMS------DK-DEVSYSAIISGYM---------VHGFVEKAMDLFQVMK 135 (468)
Q Consensus 80 ~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~---------~~~~~~~A~~~~~~~~ 135 (468)
|...+....+.++. +...++|+... ++ +...|...+.-.. ..++++.+..+|....
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88777766655543 33446666532 22 3456777665443 2345677888888877
Q ss_pred C-CC--H-hHHH---HHHHHH----------HhCCChHHHHHHHHHHHH--CCCC---------------C-----CH--
Q 012234 136 R-PG--L-STWN---AVISGL----------VQNNRHEAVLDLVREMQA--SGVR---------------P-----NA-- 174 (468)
Q Consensus 136 ~-~~--~-~~~~---~l~~~~----------~~~g~~~~a~~~~~~m~~--~~~~---------------p-----~~-- 174 (468)
. |. . .+|. .+.... -...+++.|...+.++.. .++. | +.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5 22 1 2222 222111 001123334444443321 0110 1 00
Q ss_pred -HHHHHHHHHHHccC-------ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHHhhccC---CCcch
Q 012234 175 -VTISSIFSLFSHFS-------NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQ-RVFDRFKG---RSLII 242 (468)
Q Consensus 175 -~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~---~~~~~ 242 (468)
..|...+.---..+ ..+.+..+|++++... +....++...+..+...|+.++|. .+|++... .+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 12222222211111 1233455666666543 345566666666666667766665 66666543 23334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGI---------QPD------------PVTFTAVLSACAHSGLVDKAWDIFNAM 301 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (468)
|...+...-+.|+++.|..+|+++..... .|+ ...|...+....+.|+.+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55566666667777777777776654210 121 224555666666666777777777776
Q ss_pred hhhcCCCCCHhHHHHHHHHHhcc-CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---
Q 012234 302 SGQYGIQPSVEHYACMVGVLSRA-RRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE--- 375 (468)
Q Consensus 302 ~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--- 375 (468)
.+.. ..+....|...+..-.+. ++.+.|.++|+..- .+.+...|...+......|+.+.|..+|++++...|+
T Consensus 461 ~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 6430 111223333333222233 34677777766551 2334555666666666667777777777777766652
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 376 NTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
....|...+..-.+.|+.+.+..+.+++.+.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3345666666666677777777777776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=121.54 Aligned_cols=240 Identities=11% Similarity=0.082 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHc------CC-
Q 012234 140 STWNAVISGLVQNNRHEAVLDLVREMQAS-------GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN------RY- 205 (468)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~- 205 (468)
.++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...++.+.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46777888888888888888888887762 12233455667777777888888888877776653 11
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhccCC-----------CcchHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 012234 206 DRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-----------SLIIWTAIISAYAAHGDASKAVSLFNEMLNN----- 269 (468)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----- 269 (468)
+....++..+...|...|++++|...|++..+. ...++..+...+...|++++|..+++++...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 122344555566666666666666665543320 0123444444444445555555544444332
Q ss_pred -CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhc------CCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCCCC
Q 012234 270 -GIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQY------GIQPS-VEHYACMVGVLSRARRISEATEFVSKMPVK 340 (468)
Q Consensus 270 -~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 340 (468)
+..|+ ..++..+...+...|++++|...++++.+.. ...+. ...+.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------- 242 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------- 242 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-------------------------
Confidence 11111 2233444444444444444444444443210 00000 00000
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
....+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.+++++..+
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0112222233344555666677777777777777778888888888888888888888887765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=105.18 Aligned_cols=167 Identities=13% Similarity=0.045 Sum_probs=134.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSA 284 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (468)
+..+|..+...|...|++++|+..|++..+ .++.++..+..+|...|++++|...+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 455677778888888888888888877654 345678888888889999999999998887753 3356677777788
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELG 362 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 362 (468)
+...++++.+...+.+..+. .+.+...+..+...|.+.|++++|++.|++.. .+.+..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988864 23457788888999999999999999998873 344688899999999999999999
Q ss_pred HHHHHHHHhhCCCCc
Q 012234 363 KFVCDHLFEIEPENT 377 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~ 377 (468)
++.|+++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999988653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-10 Score=106.47 Aligned_cols=263 Identities=13% Similarity=0.088 Sum_probs=174.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChhhHHHHHHHHHHcCCC-Cc----hhHHHH
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAV----TISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-RN----IYVATA 214 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 214 (468)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+......... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445666777777777777776643112221 3445556667777777777777776653211 11 123455
Q ss_pred HHHHHHhcCChHHHHHHHhhccC-----CC------cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHH
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKG-----RS------LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ--P--DPVTFT 279 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~-----~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~~ 279 (468)
+...+...|++++|...+++... .+ ..++..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 66777788888888887776543 11 134566777888889999999998887653211 1 235677
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHH-----HHHHHHhccCChHHHHHHHHhCC-CCCC-----HHHHHH
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYA-----CMVGVLSRARRISEATEFVSKMP-VKPS-----AKVWGA 348 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~-~~~~-----~~~~~~ 348 (468)
.+...+...|++++|...+++.............+. ..+..+...|++++|..++++.. ..|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 778888889999999999988764311111111121 23344778899999999998873 1221 335667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCC-----C-cchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 349 LLYGASISGDVELGKFVCDHLFEIEPE-----N-TGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 349 l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+...+...|++++|...++++....+. + ..++..++.++...|+.++|...+++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 788888999999999999988776321 1 236777889999999999999998887663
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8.1e-12 Score=102.38 Aligned_cols=162 Identities=16% Similarity=0.089 Sum_probs=106.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344444555555555555555544321 223445555555566666666666666665543 1224455556666666
Q ss_pred ccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHH
Q 012234 323 RARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVR 400 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 400 (468)
..|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|.++.++..++.+|...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666552 23456677777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCC
Q 012234 401 EQMKESG 407 (468)
Q Consensus 401 ~~m~~~~ 407 (468)
++..+..
T Consensus 168 ~~~~~~~ 174 (186)
T 3as5_A 168 KKANELD 174 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 8876643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-12 Score=120.31 Aligned_cols=205 Identities=8% Similarity=-0.116 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH-HHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhC
Q 012234 59 VFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL-DYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVM 134 (468)
Q Consensus 59 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~ 134 (468)
+.+...++...... +.+...+..+..++...|++ ++|+..|++..+ | +..+|..+...|...|++++|...|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444433322 22444455555555555555 555555554432 1 3445555555555555555555555554
Q ss_pred CC--CCHhHHHHHHHHHHhC---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CChhhHHH
Q 012234 135 KR--PGLSTWNAVISGLVQN---------NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHF--------SNLKGGKE 195 (468)
Q Consensus 135 ~~--~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a~~ 195 (468)
.+ |+...+..+...+... |++++|+..+++..+.. +.+...+..+..++... |++++|..
T Consensus 164 l~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 43 4445555666666666 66666666666666542 33445566666666665 66666666
Q ss_pred HHHHHHHcCCC--CchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 196 IHGYAVKNRYD--RNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 196 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (468)
.|+.+.+.... .+...+..+..+|...|++++|...|++..+ .+..++..+..++...|++++|+..+.+
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66666665311 3555666666667777777777777666543 2334566666666677777776665443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-11 Score=110.06 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=113.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC------CchhHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQASGV-RPN----AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD------RNIYVAT 213 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 213 (468)
....+...|++++|+..+++...... .++ ..++..+..++...|+++.|...+..+.+.... ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456677777777777777765310 122 234555666667777777777766665542110 0123444
Q ss_pred HHHHHHHhcCChHHHHHHHhhccC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKG-----RS----LIIWTAIISAYAAHGDASKAVSLFNEMLN-----NGIQPDPVTFT 279 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 279 (468)
.+..+|...|++++|...|++..+ .+ ..++..+..+|...|++++|...+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 555566666666666665554432 11 12455555566666666666666665554 21 11244555
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCC---CCCHhHHHHHHHHHhccCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGI---QPSVEHYACMVGVLSRARR---ISEATEFVSKMPVKPS-AKVWGALLYG 352 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 352 (468)
.+...+.+.|++++|...+++..+...- +.....+..+...|...++ +.+|+..+++....|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 5566666666666666666665542111 1112233344444445555 5555555555432221 1233334444
Q ss_pred HHHcCChHHHHHHHHHHH
Q 012234 353 ASISGDVELGKFVCDHLF 370 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~ 370 (468)
|...|++++|...++++.
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 444444444444444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-11 Score=107.08 Aligned_cols=213 Identities=10% Similarity=0.042 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCh-------HHHHHHHhhccC---C-CcchHHHHHHHHHH
Q 012234 191 KGGKEIHGYAVKNRYDRNIYVATAIIDTYAK-------TGFL-------HGAQRVFDRFKG---R-SLIIWTAIISAYAA 252 (468)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 252 (468)
++|..+|+.++... +.++.++..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888764 5567778777777753 5886 899999998765 2 34589999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH-hccCChHH
Q 012234 253 HGDASKAVSLFNEMLNNGIQPD-PV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL-SRARRISE 329 (468)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~ 329 (468)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+. .+++...|....... ...|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 454 33 7888999999999999999999999853 233445554443332 23799999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCC-CcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 330 ATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI---EPE-NTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 330 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
|.++|++.. .+.+...|..++..+...|++++|..+|+++.+. .|. +...|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999872 2346889999999999999999999999999996 342 5668889999999999999999999999
Q ss_pred HhCCC
Q 012234 404 KESGL 408 (468)
Q Consensus 404 ~~~~~ 408 (468)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=122.40 Aligned_cols=161 Identities=14% Similarity=0.198 Sum_probs=135.6
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHH
Q 012234 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVG 319 (468)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 319 (468)
.+++.+...+.+.|++++|+..|++..+.. +-+...+..+..++.+.|++++|+..|++..+. .| +...|..+..
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 467778888888888888888888887752 224677888888888889999999988888854 45 4678888888
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHH
Q 012234 320 VLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEAD 397 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 397 (468)
+|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 899999999999988877 3344 57889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 012234 398 RVREQMKE 405 (468)
Q Consensus 398 ~~~~~m~~ 405 (468)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-09 Score=106.39 Aligned_cols=383 Identities=9% Similarity=0.014 Sum_probs=260.7
Q ss_pred hhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC---HHHHHH
Q 012234 22 YEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS---LDYARA 98 (468)
Q Consensus 22 ~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 98 (468)
..+.+..|++.... + +-|..+|..++..+.+.++++.+..+|+.++..- +.....|...+..-.+.|. ++.+..
T Consensus 48 ~~d~i~~lE~~l~~-n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE-Q-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHH-C-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 44555566666523 2 5688899999999999999999999999999885 4577888888998889898 999999
Q ss_pred HHhhcCC-----CCeehHHHHHHHHHhcCCH--------HHHHHHHhhCC------CC-CHhHHHHHHHHHH--------
Q 012234 99 LLDEMSD-----KDEVSYSAIISGYMVHGFV--------EKAMDLFQVMK------RP-GLSTWNAVISGLV-------- 150 (468)
Q Consensus 99 ~~~~~~~-----~~~~~~~~li~~~~~~~~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~-------- 150 (468)
+|++... +++..|...+.-..+.++. +...++|+... .+ +...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999875 5666777777655554443 33446776532 23 3457777776543
Q ss_pred -hCCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHH----------ccCChhhHHHHHHHHHHc--CC----CCc--
Q 012234 151 -QNNRHEAVLDLVREMQASGVRPNAVTIS---SIFSLFS----------HFSNLKGGKEIHGYAVKN--RY----DRN-- 208 (468)
Q Consensus 151 -~~g~~~~a~~~~~~m~~~~~~p~~~~~~---~l~~~~~----------~~~~~~~a~~~~~~~~~~--~~----~~~-- 208 (468)
..++.+.+..+|++.+......-..+|. ..-.... ...+++.|...+..+... ++ +..
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 2345778999999988531111112222 2221110 011233444555443321 11 110
Q ss_pred -----------------hhHHHHHHHHHHhcC-------ChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHH-
Q 012234 209 -----------------IYVATAIIDTYAKTG-------FLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAV- 260 (468)
Q Consensus 209 -----------------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~- 260 (468)
...|...+..-...+ ..+.+..+|++... .....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 123444444333322 12345667877654 35568888888888899999997
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc--------CCCCC------------HhHHHHHHHH
Q 012234 261 SLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY--------GIQPS------------VEHYACMVGV 320 (468)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~p~------------~~~~~~l~~~ 320 (468)
.+|++.... ++.+...+...+......|+++.|..+|+++.... .-.|+ ..+|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999999874 44566667778888889999999999999988531 00132 3468888888
Q ss_pred HhccCChHHHHHHHHhCCCC---CCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHH
Q 012234 321 LSRARRISEATEFVSKMPVK---PSAKVWGALLYGASIS-GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA 396 (468)
Q Consensus 321 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 396 (468)
..+.|..+.|..+|.++... .....|...+...... ++.+.|..+|+.+++..|.++..+...++.....|+.+.|
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 88999999999999987322 2334444444333444 4599999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 012234 397 DRVREQMKESGL 408 (468)
Q Consensus 397 ~~~~~~m~~~~~ 408 (468)
..+|++......
T Consensus 524 R~lferal~~~~ 535 (679)
T 4e6h_A 524 KSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHTTTSS
T ss_pred HHHHHHHHHhcC
Confidence 999999987654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.4e-12 Score=112.91 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=97.5
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHHHHh-------CCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHH
Q 012234 42 GVTVVSVLQACGQSSDIVFGMEVHNFVIES-------HIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAI 114 (468)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 114 (468)
..++..+...+...|++++|..+++++.+. ..+....++..+..+|...|++++|...|++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------- 96 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL---------- 96 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------
Confidence 456777778888888888888888888764 223345677788888888899888888876543
Q ss_pred HHHHHhcCCHHHHHHHHhhCC--C--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHH
Q 012234 115 ISGYMVHGFVEKAMDLFQVMK--R--PGLSTWNAVISGLVQNNRHEAVLDLVREMQAS------GVRP-NAVTISSIFSL 183 (468)
Q Consensus 115 i~~~~~~~~~~~A~~~~~~~~--~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~ 183 (468)
.+++... . ....++..+...+...|++++|...++++.+. +..| ....+..+...
T Consensus 97 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 97 --------------AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp --------------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 2222210 0 11234555556666666666666666655442 1111 22344455555
Q ss_pred HHccCChhhHHHHHHHHHHc------CCCC-chhHHHHHHHHHHhcCChHHHHHHHhhc
Q 012234 184 FSHFSNLKGGKEIHGYAVKN------RYDR-NIYVATAIIDTYAKTGFLHGAQRVFDRF 235 (468)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 235 (468)
+...|++++|...++.+.+. +..| ...++..+..+|...|++++|...|+++
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666666666665555543 1111 1233444555555555555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-11 Score=102.75 Aligned_cols=189 Identities=9% Similarity=-0.053 Sum_probs=99.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLS 283 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 283 (468)
++..+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 344555555666666666666666665442 334444445556666666666666666665532 113345555556
Q ss_pred HHhccCCHHHHHHHHHHhhhhcCCCC-CH-------hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQYGIQP-SV-------EHYACMVGVLSRARRISEATEFVSKM-PVKPS---AKVWGALLY 351 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~---~~~~~~l~~ 351 (468)
++...|++++|...+++..+. .| +. ..|..+...+...|++++|++.|++. ...|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 666666666666666665543 22 22 23444555555556666666655554 23343 334444444
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.+... +...++++....+.++..+..+ .....+.+++|...+++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 44322 2333444444444443333222 2333445599999999887753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-09 Score=99.94 Aligned_cols=267 Identities=11% Similarity=-0.014 Sum_probs=157.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhCCCCCCCc-c----hHHHHHHHhhccCChHHHHHHHHHHHHhCCC-Cc----hHHH
Q 012234 11 SMIAGYSQGGFYEECKALFREMLNSPVLRPDG-V----TVVSVLQACGQSSDIVFGMEVHNFVIESHIK-MD----LWIC 80 (468)
Q Consensus 11 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 80 (468)
.....+...|++++|...+++..... +++. . .+..+...+...|+++.|...+++....... .+ ..++
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34445566788888888888876332 2221 1 3445556666778888888888777653211 11 1234
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCC---C-HhHHHHHHHHHHhCCChH
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRP---G-LSTWNAVISGLVQNNRHE 156 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~ 156 (468)
..+...+...|++++|...+++. +.+......+ . ...+..+...+...|+++
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 55666677777777777766533 2333322222 1 234566777788888888
Q ss_pred HHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCch-hHHH-----HHHHHHHhcCChH
Q 012234 157 AVLDLVREMQASGVR--P--NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI-YVAT-----AIIDTYAKTGFLH 226 (468)
Q Consensus 157 ~a~~~~~~m~~~~~~--p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~ 226 (468)
+|...+++....... + ...++..+...+...|++++|...++........++. ..+. ..+..+...|+++
T Consensus 153 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232 (373)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence 888888887653211 1 2245666777778888888888888777654222211 1111 2234466778888
Q ss_pred HHHHHHhhccCCCc-------chHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCCHHHH
Q 012234 227 GAQRVFDRFKGRSL-------IIWTAIISAYAAHGDASKAVSLFNEMLNN----GIQPDP-VTFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 227 ~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a 294 (468)
+|...+++...... ..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|
T Consensus 233 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 88888777665322 13445566677777777777777665432 211122 2444455566666777777
Q ss_pred HHHHHHhhh
Q 012234 295 WDIFNAMSG 303 (468)
Q Consensus 295 ~~~~~~~~~ 303 (468)
...+++...
T Consensus 313 ~~~l~~al~ 321 (373)
T 1hz4_A 313 QRVLLDALK 321 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=9.3e-11 Score=95.94 Aligned_cols=167 Identities=13% Similarity=0.035 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 012234 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACA 286 (468)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (468)
..+..+...+...|++++|...|+++.+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44566778888999999999999988763 45678888899999999999999999998763 446778888899999
Q ss_pred ccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHH
Q 012234 287 HSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKF 364 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 364 (468)
..|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998864 24467788889999999999999999998873 34468899999999999999999999
Q ss_pred HHHHHHhhCCCCcch
Q 012234 365 VCDHLFEIEPENTGN 379 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~ 379 (468)
.++++.+..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999988876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-10 Score=105.15 Aligned_cols=218 Identities=10% Similarity=0.031 Sum_probs=143.3
Q ss_pred HHHhcCCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhCCChHHHHHHHHHHHHC----C-CCC-CHHHHHHHH
Q 012234 117 GYMVHGFVEKAMDLFQVMKR-----PG----LSTWNAVISGLVQNNRHEAVLDLVREMQAS----G-VRP-NAVTISSIF 181 (468)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~-~~p-~~~~~~~l~ 181 (468)
.+...|++++|+..|++..+ ++ ..++..+...|...|++++|+..+++..+. + ..+ ...++..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34455556666555555432 22 235666777777777777777777776542 1 011 134566677
Q ss_pred HHHHccCChhhHHHHHHHHHHcC----CC-CchhHHHHHHHHHHhcCChHHHHHHHhhccC-----CC---cchHHHHHH
Q 012234 182 SLFSHFSNLKGGKEIHGYAVKNR----YD-RNIYVATAIIDTYAKTGFLHGAQRVFDRFKG-----RS---LIIWTAIIS 248 (468)
Q Consensus 182 ~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~---~~~~~~l~~ 248 (468)
.+|...|++++|...+..+.+.. .+ ....++..+..+|...|++++|...|++..+ .+ ..++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 77777777777777777666531 11 1234566778888888888888888877654 33 346777888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHhccCC---HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGI---QPD-PVTFTAVLSACAHSGL---VDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (468)
.+.+.|++++|...+++..+... .|. ...+..+...+...++ +.+|...+++.. ..+.....+..+...|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHH
Confidence 89999999999999998876321 122 3455666667777788 777777777632 1122345667788899
Q ss_pred hccCChHHHHHHHHhC
Q 012234 322 SRARRISEATEFVSKM 337 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~ 337 (468)
...|++++|.+.|++.
T Consensus 347 ~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 9999999999998875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-11 Score=100.23 Aligned_cols=205 Identities=8% Similarity=0.006 Sum_probs=160.7
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHH
Q 012234 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIIS 248 (468)
Q Consensus 172 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~ 248 (468)
.|+..+......+...|++++|...|..+.+...+++...+..+..++...|++++|+..|++..+. +..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567888889999999999999999999999875477777777999999999999999999998753 3467888999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC---HhHHHHHH
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGIQPDP-------VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS---VEHYACMV 318 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 318 (468)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999998853 2234 4577788889999999999999999984 3565 56777778
Q ss_pred HHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 319 GVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
..|...|+. .++++. ...+...+.... ....+.+++|...++++.+..|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 887665543 233321 123344444433 34456789999999999999999988877776553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8.1e-11 Score=103.49 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=73.6
Q ss_pred CCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHc------CC-CCchhHHHHHHH
Q 012234 152 NNRHEAVLDLVREMQAS-------GVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN------RY-DRNIYVATAIID 217 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~ 217 (468)
.|++++|+..+++.++. +.+....++..+...+...|++++|...+..+.+. +. +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555554431 11222345555666666666666666666665543 11 122344555666
Q ss_pred HHHhcCChHHHHHHHhhccC-------C-C---cchHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHH
Q 012234 218 TYAKTGFLHGAQRVFDRFKG-------R-S---LIIWTAIISAYAAHGDASKAVSLFNEMLNN------GIQP-DPVTFT 279 (468)
Q Consensus 218 ~~~~~g~~~~a~~~~~~~~~-------~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~ 279 (468)
.|...|++++|...|++..+ + + ..++..+...+...|++++|...++++.+. +..| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 66666666666666554432 1 1 123444445555555555555555554432 1011 123344
Q ss_pred HHHHHHhccCCHHHHHHHHHHhh
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
.+...+...|++++|...++++.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444555555555555554444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-09 Score=92.87 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=116.0
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC-----CcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 193 GKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR-----SLIIWTAIISAYAAHGDASKAVSLFNEML 267 (468)
Q Consensus 193 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 267 (468)
+...++.....+ .++..++..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555443 334444456667777777777777777776443 23456667778888888888888888887
Q ss_pred HCCCCC-----CHHHHHHHHHH--HhccC--CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC
Q 012234 268 NNGIQP-----DPVTFTAVLSA--CAHSG--LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338 (468)
Q Consensus 268 ~~~~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 338 (468)
+. .| +..+...+..+ ....| ++.+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 55 34555555555 22223 788888888887653 3542333344447788888888888887542
Q ss_pred C------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Q 012234 339 V------------KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 339 ~------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
. +.++.+...++......|+ +|.++++++.+..|+++.+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 2346666566666666676 7788888888888887744
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-09 Score=92.88 Aligned_cols=239 Identities=10% Similarity=0.032 Sum_probs=165.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 012234 147 SGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH 226 (468)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 226 (468)
+-..-.|++..++.-...+.. ......-..+.+++...|++... ....|....+..+. .|...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc---
Confidence 344556777777763322211 11222333445666666666531 11123322333333 333333
Q ss_pred HHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 227 GAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 227 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
|+..|++... ++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6777777664 34456667888999999999999999998776532 245677888999999999999999999998
Q ss_pred hhcCCCC-----CHhHHHHHHHHH--hccC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 012234 303 GQYGIQP-----SVEHYACMVGVL--SRAR--RISEATEFVSKMP-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEI 372 (468)
Q Consensus 303 ~~~~~~p-----~~~~~~~l~~~~--~~~~--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 372 (468)
+. .| +..+...|..++ ...| +..+|..+|+++. ..|+..+-..++.++...|++++|++.++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 56 355556666553 3334 8999999999984 4565344444555889999999999999988776
Q ss_pred ----------CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 373 ----------EPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 373 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48899999888888888897 8999999998865
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-10 Score=113.29 Aligned_cols=164 Identities=9% Similarity=-0.061 Sum_probs=87.6
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
+.+|+.|...+.+.|++++|++.|++.. +.. +-+...|..+..++.+.|++++|...|++.++..+. +...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl-~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKAL-EVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3456666666666666666666666665 221 223445556666666666666666666666665432 4555555666
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 012234 86 MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 165 (468)
+|...|++++|++.|++..+-+ ..+...|+.+..+|...|++++|++.|++.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~----------------------------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN----------------------------PAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666666555443200 122344555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 012234 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201 (468)
Q Consensus 166 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (468)
++.. +-+...+..+..++...|++++|.+.++++.
T Consensus 138 l~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 138 LKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 5432 2233445555555555555555555554443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-09 Score=94.98 Aligned_cols=182 Identities=12% Similarity=0.022 Sum_probs=124.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhccCC---C---cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 012234 208 NIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---S---LIIWTAIISAYAAHGDASKAVSLFNEMLNNGI-QPD-PVTFT 279 (468)
Q Consensus 208 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~ 279 (468)
+...+..+...+.+.|++++|...|+++.+. + ..++..+..++...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455566677777788888888888777652 2 34566677777788888888888887776421 112 34555
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHH
Q 012234 280 AVLSACAH--------SGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALL 350 (468)
Q Consensus 280 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~ 350 (468)
.+..++.. .|++++|...|+++.+. .|+ ......+.......+.. ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 66666666 77788888888777754 232 22222211111100000 11246678
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHc----------CChHHHHHHHHHHHhCC
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPENT---GNYIIMANLYSQA----------GRWDEADRVREQMKESG 407 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 407 (468)
..+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 889999999999999999999998854 5788999999977 89999999999998754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-10 Score=98.95 Aligned_cols=217 Identities=12% Similarity=-0.012 Sum_probs=107.6
Q ss_pred CHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChhhHHHHH
Q 012234 123 FVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS----GVRPN-AVTISSIFSLFSHFSNLKGGKEIH 197 (468)
Q Consensus 123 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 197 (468)
++++|...|++. ...|...|++++|+..|.+.... |-+++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356666655543 55666777777777777666442 21111 235555666666666666666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHCCC----C
Q 012234 198 GYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAH-GDASKAVSLFNEMLNNGI----Q 272 (468)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~----~ 272 (468)
+...+.. ...|+...+ ..+++.+...|... |++++|+..|++..+... .
T Consensus 101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 5554421 111111111 12344555556554 666666666665544210 0
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH-----hHHHHHHHHHhccCChHHHHHHHHhCC-CCCCH--
Q 012234 273 PD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV-----EHYACMVGVLSRARRISEATEFVSKMP-VKPSA-- 343 (468)
Q Consensus 273 p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~-- 343 (468)
+. ..++..+...+...|++++|...|++..+...-.+.. ..+..+..++...|++++|+..|++.. ..|+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 00 2345556666666666666666666665431111111 134555556666666666666666552 23321
Q ss_pred ----HHHHHHHHHHH--HcCChHHHHHHHHHHHhhCCCC
Q 012234 344 ----KVWGALLYGAS--ISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 344 ----~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
..+..++.++. ..+++++|+..|+++..++|.+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 12233334433 2345666666665555555433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=84.33 Aligned_cols=126 Identities=20% Similarity=0.205 Sum_probs=79.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASIS 356 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 356 (468)
..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++. .+.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444455555555555555555432 12234444555555555555555555555541 233455666677777777
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|++++|...++++.+..|.++.++..++.+|.+.|++++|...++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888887777777777888888888888888888888777654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=95.16 Aligned_cols=203 Identities=9% Similarity=0.015 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCChHHHHHHHhhccC--C-C---cchH
Q 012234 172 PNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR--NIYVATAIIDTYAKTGFLHGAQRVFDRFKG--R-S---LIIW 243 (468)
Q Consensus 172 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~ 243 (468)
.+...+..+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ | + ..++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 455677778888999999999999999999875221 156778899999999999999999999875 2 2 2457
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHH
Q 012234 244 TAIISAYAA--------HGDASKAVSLFNEMLNNGIQPDP-VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHY 314 (468)
Q Consensus 244 ~~l~~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 314 (468)
..+..++.. .|++++|+..|+++.+. .|+. ... .+...+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~--------------~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVD--------------DATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHH--------------HHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHH--------------HHHHHHHHHHHH-----HHHHH
Confidence 777888888 99999999999999875 3332 111 111111111110 01224
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCCCCcch
Q 012234 315 ACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASIS----------GDVELGKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~ 379 (468)
..+...|.+.|++++|+..|+++. ..|+ ...+..+..++... |++++|+..++++.+..|+++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 556777888888888888887762 2232 45677777777765 88999999999999999988643
Q ss_pred ---HHHHHHHHHHcCChHH
Q 012234 380 ---YIIMANLYSQAGRWDE 395 (468)
Q Consensus 380 ---~~~l~~~~~~~g~~~~ 395 (468)
...+..++.+.+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4445555555544443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=96.17 Aligned_cols=162 Identities=12% Similarity=-0.002 Sum_probs=106.5
Q ss_pred hcCCChhHHHHHHHHhhh------CCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHh------CC-CCchHHHHHH
Q 012234 17 SQGGFYEECKALFREMLN------SPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIES------HI-KMDLWICNAL 83 (468)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 83 (468)
...|++++|+..|++..+ ....+....++..+...+...|++++|...++++++. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777777777652 1111223556778888888889999999888888765 21 2235567778
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCC----CHhHHHHHHHHHHhCCChHHHH
Q 012234 84 IGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRP----GLSTWNAVISGLVQNNRHEAVL 159 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~ 159 (468)
..+|...|++++|...|++. +.+++....+ ...++..+...+...|++++|+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRA------------------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH------------------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877644 2222222111 2345677777788888888888
Q ss_pred HHHHHHHHC------CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 012234 160 DLVREMQAS------GVRP-NAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202 (468)
Q Consensus 160 ~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 202 (468)
..+++..+. +..| ...++..+..++...|++++|...++.+.+
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888777653 1122 234566677777777777777777777665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-09 Score=88.72 Aligned_cols=183 Identities=12% Similarity=0.048 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhccC--CC-c---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-HHHHH
Q 012234 209 IYVATAIIDTYAKTGFLHGAQRVFDRFKG--RS-L---IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQ-PDP-VTFTA 280 (468)
Q Consensus 209 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~-~~~~~ 280 (468)
...+..+...+.+.|++++|+..|+++.+ |+ . ..+..+..++.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566777888888888888887764 22 1 35667777888888888888888887764211 111 23333
Q ss_pred HHHHHhc------------------cCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChHHHHHHHHhCCCCC
Q 012234 281 VLSACAH------------------SGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRISEATEFVSKMPVKP 341 (468)
Q Consensus 281 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 341 (468)
+..++.. .|++++|...|+++.+. .|+ ...+........ .....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH----------
Confidence 4444433 45667777777776643 232 222211111000 00000
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT---GNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456778899999999999999999999876 56889999999999999999999999887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.7e-09 Score=91.88 Aligned_cols=197 Identities=9% Similarity=0.030 Sum_probs=131.5
Q ss_pred ehHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012234 109 VSYSAIISGYMVHGFVEKAMDLFQVMKR-----PG----LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISS 179 (468)
Q Consensus 109 ~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 179 (468)
..|......|...|++++|...|++... .+ ..+|+.+..+|...|++++|+..+++.++..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------- 107 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------- 107 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------
Confidence 4577788889999999999999987753 12 3578999999999999999999999887531
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-CChHHHHHHHhhccCC-----C----cchHHHHHHH
Q 012234 180 IFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT-GFLHGAQRVFDRFKGR-----S----LIIWTAIISA 249 (468)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~ 249 (468)
...|+...+. .++..+..+|... |++++|+..|++..+- + ..++..+...
T Consensus 108 -----~~~g~~~~~a---------------~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 167 (292)
T 1qqe_A 108 -----THRGQFRRGA---------------NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167 (292)
T ss_dssp -----HHTTCHHHHH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHcCCHHHHH---------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 1122222111 1233344455553 5555555555544320 1 2356777888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH------hHHHHH
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDP------VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV------EHYACM 317 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~l 317 (468)
+...|++++|+..|++..+....... ..+..+..++...|++++|...|++..+ +.|+. ..+..+
T Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSL 244 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHH
Confidence 88889999999999888875322221 1566777788888999999999998873 34432 123445
Q ss_pred HHHHh--ccCChHHHHHHHHhCC
Q 012234 318 VGVLS--RARRISEATEFVSKMP 338 (468)
Q Consensus 318 ~~~~~--~~~~~~~A~~~~~~~~ 338 (468)
+..+. ..+++++|+..|+++.
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHhccCC
Confidence 55554 5677999999998874
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.7e-09 Score=86.06 Aligned_cols=172 Identities=10% Similarity=-0.020 Sum_probs=135.3
Q ss_pred HHHHHhhccC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhh
Q 012234 228 AQRVFDRFKG-RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG----LVDKAWDIFNAMS 302 (468)
Q Consensus 228 a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 302 (468)
|...|++..+ .++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444332 455677777778888888999999998888765 55666677777777 6 8999999999887
Q ss_pred hhcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 012234 303 GQYGIQPSVEHYACMVGVLSR----ARRISEATEFVSKMP-VKPS---AKVWGALLYGASI----SGDVELGKFVCDHLF 370 (468)
Q Consensus 303 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 370 (468)
+. .++..+..|...|.. .+++++|+++|++.. ..|. +..+..|...|.. .+++++|...|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 356677778888877 789999999998885 3332 7888889888888 889999999999998
Q ss_pred hhCCCCcchHHHHHHHHHHc-C-----ChHHHHHHHHHHHhCCC
Q 012234 371 EIEPENTGNYIIMANLYSQA-G-----RWDEADRVREQMKESGL 408 (468)
Q Consensus 371 ~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 408 (468)
+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778899999999874 3 89999999999988775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.3e-09 Score=93.51 Aligned_cols=175 Identities=7% Similarity=-0.044 Sum_probs=139.7
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 227 GAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 227 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
.....+......+...+..+...+...|++++|...|++..... +-+...+..+...+...|++++|...++++...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 34444444444455567777888899999999999999998762 335678888999999999999999999998754
Q ss_pred CCCCHhHHHH-HHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--cchHH
Q 012234 307 IQPSVEHYAC-MVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN--TGNYI 381 (468)
Q Consensus 307 ~~p~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~ 381 (468)
.|+...... ....+...++.++|+..+++.. .+.+...+..+...+...|++++|...+.++++.+|++ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 455443332 2334667788888888887762 34568899999999999999999999999999999987 88999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 012234 382 IMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.++.+|...|+.++|...+++...
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=90.97 Aligned_cols=140 Identities=9% Similarity=-0.001 Sum_probs=96.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccC
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRAR 325 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 325 (468)
..+...|++++|+..++..... .|+ ...+..+...|...|++++|...|++..+. .| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 3444556677777777665432 222 234455667777777777777777777753 33 5667777777777777
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHH-HHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 326 RISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFV-CDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 326 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
++++|+..|++. ...| +...|..+...+...|++++|.+. ++++.+++|.++.+|......+.+.|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777766 2344 567788888888888888765554 588888888888888888888877765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.4e-09 Score=79.76 Aligned_cols=131 Identities=19% Similarity=0.236 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (468)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667778888888888888888887653 335667777888888888999999988888754 234566777888888
Q ss_pred hccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 322 SRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
...|++++|.++++++. .+.+...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88999999998888772 3446778888888999999999999999999888775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.3e-10 Score=110.07 Aligned_cols=168 Identities=13% Similarity=-0.027 Sum_probs=118.7
Q ss_pred HhcCChHHHHHHHhhcc--------C---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 012234 220 AKTGFLHGAQRVFDRFK--------G---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHS 288 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~--------~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (468)
...|++++|++.+++.. + .+...+..+..++...|++++|+..|+++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56777788877777765 2 344567777777778888888888887777642 23456677777777778
Q ss_pred CCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCChHHHHHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-VK-PSAKVWGALLYGASISGDVELGKFV 365 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~ 365 (468)
|++++|...|+++.+. .| +...+..+..+|.+.|++++ ++.|++.. .. .+...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888877753 34 45667777777788888877 77777662 23 3567777777888888888888888
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
|+++.+.+|.+..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888777777777777766554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-06 Score=82.49 Aligned_cols=347 Identities=11% Similarity=0.042 Sum_probs=193.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCC-hHHHHHHHHHHHHh-CCC-CchHHHHHHH
Q 012234 8 SWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSD-IVFGMEVHNFVIES-HIK-MDLWICNALI 84 (468)
Q Consensus 8 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l~ 84 (468)
+|...+..+-. |+++.+..+|++.. .. .|+...|...+....+.++ .+....+|+.++.. |.. .+..+|...+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal-~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCL-KK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHS-TT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHh-cc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 45666666655 88999999999998 43 4788898888887766653 45677888888765 433 3667788777
Q ss_pred HHHH----hCCCHHHHHHHHhhcCCCCeehHHHHHHHHHh-----------------cCCHHHHHHHHhhCCC----CCH
Q 012234 85 GMYA----KCGSLDYARALLDEMSDKDEVSYSAIISGYMV-----------------HGFVEKAMDLFQVMKR----PGL 139 (468)
Q Consensus 85 ~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-----------------~~~~~~A~~~~~~~~~----~~~ 139 (468)
..+. ..|+.+.+.++|++...-....+..+-..|.. .+.+..|..+++.+.. .+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 24678889999998765211111111111111 1122223333332221 233
Q ss_pred hHHHHHHHHHHhCC--C-----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHH
Q 012234 140 STWNAVISGLVQNN--R-----HEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVA 212 (468)
Q Consensus 140 ~~~~~l~~~~~~~g--~-----~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 212 (468)
..|...+..-...+ - .+.+..+|++++... +.+...+...+.-+.+.|+.+.|..+++..... +.+...+
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 45555554432221 1 345677888877652 445666766777777888889999999888887 3333322
Q ss_pred HHHHHHHHhcCChHHH-HHHHhhcc--C----------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012234 213 TAIIDTYAKTGFLHGA-QRVFDRFK--G----------RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFT 279 (468)
Q Consensus 213 ~~l~~~~~~~g~~~~a-~~~~~~~~--~----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 279 (468)
. .|......++. ..+.+... . .....|...+....+.++.+.|..+|++. .. ...+...|.
T Consensus 250 ~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i 323 (493)
T 2uy1_A 250 L----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFI 323 (493)
T ss_dssp H----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHH
T ss_pred H----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHH
Confidence 2 22222111111 11111110 0 01124555555555566677777777776 21 112333333
Q ss_pred HHHHHHhc-cCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 012234 280 AVLSACAH-SGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGD 358 (468)
Q Consensus 280 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 358 (468)
.....-.. .++.+.|..+|+...+.++ .++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCC
Confidence 22211111 2256777777777766432 223344555666666677777777777762 245666666666666677
Q ss_pred hHHHHHHHHHHHh
Q 012234 359 VELGKFVCDHLFE 371 (468)
Q Consensus 359 ~~~a~~~~~~~~~ 371 (468)
.+.+..+++++..
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777666666654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-09 Score=85.90 Aligned_cols=159 Identities=9% Similarity=0.031 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH-H
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV-L 321 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~ 321 (468)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++... .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4445556666777777777776655431 224556666667777777777777777776643 2333322222111 1
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--cchHHHHHHHHHHcCChHHHH
Q 012234 322 SRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQAGRWDEAD 397 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 397 (468)
...+...+|+..+++. ...| +...+..+...+...|++++|+..++++.+.+|.. +..+..++.+|...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222223456666655 2344 57888999999999999999999999999999864 558999999999999999999
Q ss_pred HHHHHHHh
Q 012234 398 RVREQMKE 405 (468)
Q Consensus 398 ~~~~~m~~ 405 (468)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.8e-09 Score=101.69 Aligned_cols=160 Identities=9% Similarity=-0.019 Sum_probs=124.0
Q ss_pred cCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 012234 222 TGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (468)
.|++++|...|++..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999988763 45688899999999999999999999998863 335778888999999999999999999
Q ss_pred HHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhhC
Q 012234 299 NAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASIS---GDVELGKFVCDHLFEIE 373 (468)
Q Consensus 299 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 373 (468)
++..+. .+.+...+..+...|.+.|++++|.+.+++.. . +.+...+..+...+... |+.++|.+.++++.+.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999864 23357788999999999999999999999872 3 34678899999999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 012234 374 PENTGNYIIMA 384 (468)
Q Consensus 374 ~~~~~~~~~l~ 384 (468)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.6e-09 Score=82.31 Aligned_cols=102 Identities=11% Similarity=-0.039 Sum_probs=90.3
Q ss_pred CCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 306 GIQP-SVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 306 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
.+.| +...+..+...+.+.|++++|+..|++.. . +.+...|..+..++...|++++|+..|+++.+.+|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3455 45677788888999999999999999883 3 4468899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 383 MANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
++.+|.+.|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=9.3e-10 Score=86.65 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=102.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISG 357 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 357 (468)
|...+...|++++|+..+..... ..| +...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44566778899999999988774 344 3456677899999999999999999987 3444 6889999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHH-HHHHHhC
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRV-REQMKES 406 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 406 (468)
++++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5777663
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-08 Score=83.45 Aligned_cols=130 Identities=11% Similarity=-0.004 Sum_probs=61.5
Q ss_pred HHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-
Q 012234 215 IIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL- 290 (468)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~- 290 (468)
+..+|.+.|++++|+..|++..+ .++..+..+..++...|++++|+..|++..+.. +-+...+..+..++...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 45555555555555555555443 233455555556666666666666666655532 2234455555555443332
Q ss_pred -HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHH
Q 012234 291 -VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKPSAKVWGA 348 (468)
Q Consensus 291 -~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~ 348 (468)
.+.+...++... ...|....+..+..++...|++++|+..|++. ...|+......
T Consensus 139 ~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 139 EKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 223333333332 11222222333344445556666666666554 34555444333
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-08 Score=89.59 Aligned_cols=219 Identities=12% Similarity=0.054 Sum_probs=141.5
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 012234 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH-FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQR 230 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 230 (468)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456667777776665421 110 111 35555555555433 344556666666666
Q ss_pred HHhhccC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHH
Q 012234 231 VFDRFKG-----RS----LIIWTAIISAYAAHGDASKAVSLFNEMLNNG---IQPD--PVTFTAVLSACAHSGLVDKAWD 296 (468)
Q Consensus 231 ~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~ 296 (468)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6655432 11 2367777788888888888888888765421 1121 3567778888888 99999999
Q ss_pred HHHHhhhhcCCCC----CHhHHHHHHHHHhccCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCChHHHHH
Q 012234 297 IFNAMSGQYGIQP----SVEHYACMVGVLSRARRISEATEFVSKMP----VKPS----AKVWGALLYGASISGDVELGKF 364 (468)
Q Consensus 297 ~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~ 364 (468)
.|++......-.. ...++..+...|.+.|++++|+..|++.. ..++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9988775321111 14567888899999999999999998772 1122 2356667777888899999999
Q ss_pred HHHHHHhhCCCCcch-----HHHHHHHHHHcCChHHHHHH
Q 012234 365 VCDHLFEIEPENTGN-----YIIMANLYSQAGRWDEADRV 399 (468)
Q Consensus 365 ~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~ 399 (468)
.++++. ..|..... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 88865433 33455555 56777666553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-08 Score=83.21 Aligned_cols=128 Identities=11% Similarity=0.077 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHh
Q 012234 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLS 322 (468)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 322 (468)
..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. .| +...+..+...|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 348889999999999999999998863 336788889999999999999999999999864 45 5778888888876
Q ss_pred ccCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 323 RARR--ISEATEFVSKMPVKPSA--KVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 323 ~~~~--~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
..|+ ...+...++... .|++ ..+.....++...|++++|+..|+++++..|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 455666776664 3443 345556667778899999999999999999963
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.94 E-value=3.8e-08 Score=93.42 Aligned_cols=100 Identities=10% Similarity=-0.056 Sum_probs=58.6
Q ss_pred cCC-ChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC-HHH
Q 012234 18 QGG-FYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGS-LDY 95 (468)
Q Consensus 18 ~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 95 (468)
+.| +++.|..+|+.+... -|. |+++.+..+|+..+.. .|+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 345 377777777777622 132 8888899999888874 3577788887777766653 334
Q ss_pred HHHHHhhcCC------CCeehHHHHHHHHH----hcCCHHHHHHHHhhCCC
Q 012234 96 ARALLDEMSD------KDEVSYSAIISGYM----VHGFVEKAMDLFQVMKR 136 (468)
Q Consensus 96 A~~~~~~~~~------~~~~~~~~li~~~~----~~~~~~~A~~~~~~~~~ 136 (468)
...+|+.... .+...|...+.-+. ..++.+.+..+|++...
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 4555554331 24456666665443 23556667777776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-08 Score=83.19 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=98.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 012234 278 FTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASI 355 (468)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 355 (468)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|++.+++.. .+.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445556677788888887777653 4566777777778888888888888777662 23457788888888888
Q ss_pred cCChHHHHHHHHHHHhhCCCCc----------------chHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 356 SGDVELGKFVCDHLFEIEPENT----------------GNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.|++++|+..++++.+..|.+. .++..++.+|.+.|++++|.+.+++..+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999888887776 7888999999999999999999988877543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-08 Score=97.29 Aligned_cols=147 Identities=11% Similarity=-0.009 Sum_probs=81.2
Q ss_pred cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLF 263 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 263 (468)
.|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+. +...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356666666666666543 334556666666777777777777777665542 3346666666777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhcc---CChHHHHHHHHhC
Q 012234 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRA---RRISEATEFVSKM 337 (468)
Q Consensus 264 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~ 337 (468)
++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7766642 224556666666777777777777777766643 122455666666666666 6777777766655
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.3e-09 Score=81.58 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=90.9
Q ss_pred HHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 012234 297 IFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIE 373 (468)
Q Consensus 297 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 373 (468)
.|+++. .+.| +...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..|+++++.+
T Consensus 9 ~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455554 3345 45667778888899999999999998872 34478889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 374 PENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 374 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
|+++.++..++.+|...|++++|...+++..+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999987754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.3e-08 Score=96.72 Aligned_cols=189 Identities=11% Similarity=0.025 Sum_probs=142.3
Q ss_pred HccCChhhHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHc
Q 012234 185 SHFSNLKGGKEIHGYAV--------KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAH 253 (468)
Q Consensus 185 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 253 (468)
...|++++|.+.++.+. +.. +.+...+..+..+|...|++++|+..|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888999999998887 332 44566788888899999999999999988775 4567888889999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHH
Q 012234 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEF 333 (468)
Q Consensus 254 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 333 (468)
|++++|+..|++..+.. +-+...+..+..++...|++++ ...|+++.+. -+.+...+..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998753 2246778888889999999999 9999998864 133567888899999999999999999
Q ss_pred HHhCC-CCCC-HHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhhCCCCcc
Q 012234 334 VSKMP-VKPS-AKVWGALLYGASISGD-----VELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 334 ~~~~~-~~~~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 378 (468)
|++.. ..|+ ...+..+..++...++ .+...+..+......+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99984 5665 5677777777766555 23334444444444444444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.9e-09 Score=92.53 Aligned_cols=197 Identities=10% Similarity=-0.009 Sum_probs=148.0
Q ss_pred ccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 186 HFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (468)
..|++++|.+++++..+.... . + +...++++.|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356778888888887764321 1 0 1115788888888665 45678899999999999988
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCC--CC--CHhHHHHHHHHHhccCChHHHHHHHHh
Q 012234 266 MLNN----GIQPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI--QP--SVEHYACMVGVLSRARRISEATEFVSK 336 (468)
Q Consensus 266 m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 336 (468)
..+. +-.+. ..+|..+...|...|++++|...|++..+.+.- .+ ...++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 357888889999999999999999987653211 12 14567788888988 999999999987
Q ss_pred CC-C-----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc------chHHHHHHHHHHcCChHHHHHHHHH
Q 012234 337 MP-V-----KP--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT------GNYIIMANLYSQAGRWDEADRVREQ 402 (468)
Q Consensus 337 ~~-~-----~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (468)
.. . .+ ...++..+...+...|++++|+..++++.+..|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 62 1 11 146788899999999999999999999999865433 3677788888899999999999999
Q ss_pred HH
Q 012234 403 MK 404 (468)
Q Consensus 403 m~ 404 (468)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-07 Score=82.83 Aligned_cols=161 Identities=7% Similarity=-0.041 Sum_probs=121.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHH
Q 012234 245 AIISAYAAHGDASKAVSLFNEMLNNG-IQPDPV----TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYA 315 (468)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~ 315 (468)
..+..+...|++++|..++++..... ..|+.. .+..+...+...+++++|...++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999887642 223321 2334666777888999999999998863111223 33688
Q ss_pred HHHHHHhccCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------cchH
Q 012234 316 CMVGVLSRARRISEATEFVSKMP-----VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPEN------TGNY 380 (468)
Q Consensus 316 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 380 (468)
.+...|...|++++|+..|+++. .+.+ ..++..+...|...|++++|...++++.+..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88999999999999999888762 1112 3478889999999999999999999998874322 5678
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHh
Q 012234 381 IIMANLYSQAGR-WDEADRVREQMKE 405 (468)
Q Consensus 381 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 405 (468)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.1e-07 Score=79.32 Aligned_cols=214 Identities=9% Similarity=0.082 Sum_probs=100.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC--ChhhHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---
Q 012234 153 NRHEAVLDLVREMQASGVRPNA-VTISSIFSLFSHFS--NLKGGKEIHGYAVKNRYDRNIYVATAIIDTY----AKT--- 222 (468)
Q Consensus 153 g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 222 (468)
...++|+..++.++.. .|+. ..++.--.++...| +++++...+..+.... +-+..+++.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3345777777777765 3433 34455555555566 6666666666666654 22223333222222 222
Q ss_pred CChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------H
Q 012234 223 GFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDAS--KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL------V 291 (468)
Q Consensus 223 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~------~ 291 (468)
+++++++.+++++.+ ++..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 445555555555443 23334444444444445444 55555555544322 133344433333333333 4
Q ss_pred HHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Q 012234 292 DKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDV-ELGKFVCDHLF 370 (468)
Q Consensus 292 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 370 (468)
+++++.++++... .+-|...|+.+...+...|+. +.+..++.++.
T Consensus 203 ~eEl~~~~~aI~~----------------------------------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 203 DEELNYVKDKIVK----------------------------------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHHHHHHHHH----------------------------------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHHHHHHHHHh----------------------------------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4444444444432 222444444444444444442 22333444444
Q ss_pred hhC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 371 EIE---PENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 371 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+.+ |.++.++..++++|.+.|+.++|.++++.+.
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 333 4455555555555555555555555555554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-08 Score=78.62 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHHHHHHHHhcCCHHHHHHHHhhCC
Q 012234 82 ALIGMYAKCGSLDYARALLDEMSD---KDEVSYSAIISGYMVHGFVEKAMDLFQVMK 135 (468)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 135 (468)
.+...+...|++++|...|++..+ .+...+..+...+...|++++|+..|++..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 344445555555555555555543 133444445555555555555555555444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-06 Score=75.95 Aligned_cols=183 Identities=9% Similarity=0.029 Sum_probs=132.8
Q ss_pred HHHhcC-CHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hc
Q 012234 117 GYMVHG-FVEKAMDLFQVMKR--PG-LSTWNAVISGLVQNN--RHEAVLDLVREMQASGVRPNAVTISSIFSLF----SH 186 (468)
Q Consensus 117 ~~~~~~-~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----~~ 186 (468)
+..+.| ..++|+.+++.+.. |+ ..+|+.--.++...| ++++++++++.++... +-+...++.-...+ ..
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 334444 45789999998875 43 456888888888888 9999999999998864 33444555444444 44
Q ss_pred c---CChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH--HHHHHHhhccC---CCcchHHHHHHHHHHcCC---
Q 012234 187 F---SNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLH--GAQRVFDRFKG---RSLIIWTAIISAYAAHGD--- 255 (468)
Q Consensus 187 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~--- 255 (468)
. ++++++..++..+.+.. +-+..+++--.-++.+.|.++ ++++.++++.+ .|..+|+.........++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence 5 78999999999999876 556677776666777788888 99999998876 455678777777777776
Q ss_pred ---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHhh
Q 012234 256 ---ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVD-KAWDIFNAMS 302 (468)
Q Consensus 256 ---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~ 302 (468)
++++++.+++++... +-|...++.+...+.+.|+.. .+..+..++.
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 899999999998863 346777777777776666533 3444555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-07 Score=83.64 Aligned_cols=164 Identities=6% Similarity=-0.071 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCCHHHHHHHHHHhhhhcC--CCCC--Hh
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD-P----VTFTAVLSACAHSGLVDKAWDIFNAMSGQYG--IQPS--VE 312 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~~ 312 (468)
.+...+..+...|++++|.+.+.+..+...... . ..+..+...+...|++++|...+++..+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566778889999999999988877532211 1 2234456667888999999999988874311 1111 44
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------Cc
Q 012234 313 HYACMVGVLSRARRISEATEFVSKMP----VKPS-----AKVWGALLYGASISGDVELGKFVCDHLFEIEPE------NT 377 (468)
Q Consensus 313 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 377 (468)
+++.+...|...|++++|+..+++.. ..|+ ..++..+...|...|++++|+..++++.+..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999999998762 1222 258888999999999999999999999876421 14
Q ss_pred chHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 012234 378 GNYIIMANLYSQAGRWDEA-DRVREQMKE 405 (468)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 405 (468)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777877654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.2e-08 Score=75.04 Aligned_cols=108 Identities=9% Similarity=-0.016 Sum_probs=63.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGAS 354 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~ 354 (468)
.+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445555566666666666666665542 12245555566666666666666666665541 2 234556666666666
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
..|++++|++.|+++++++|.++.++..|..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666666666666666666666555543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.6e-08 Score=84.10 Aligned_cols=160 Identities=8% Similarity=-0.007 Sum_probs=100.4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHH-H
Q 012234 74 KMDLWICNALIGMYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMKR--PGLSTWNAVI-S 147 (468)
Q Consensus 74 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~-~ 147 (468)
+.+...+..+...+...|++++|...|++..+ | +...+..+...+.+.|++++|...++++.. |+........ .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 44555666677777778888888888877653 3 455677777777777777777777777764 4443222222 2
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCChH
Q 012234 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR-NIYVATAIIDTYAKTGFLH 226 (468)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 226 (468)
.+...++.++|+..+++..... +.+...+..+...+...|++++|...+..+.+..... +...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3555666677777777766653 3345566666667777777777777777776654222 2445556666666666666
Q ss_pred HHHHHHhh
Q 012234 227 GAQRVFDR 234 (468)
Q Consensus 227 ~a~~~~~~ 234 (468)
+|...|++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-08 Score=82.79 Aligned_cols=184 Identities=13% Similarity=-0.032 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCChHHHHHHHhhccC--CC-cc---hHHH
Q 012234 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDR--NIYVATAIIDTYAKTGFLHGAQRVFDRFKG--RS-LI---IWTA 245 (468)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~---~~~~ 245 (468)
...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+ .. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455667778899999999999999999864322 235677789999999999999999999875 32 22 4555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 246 IISAYAA------------------HGDASKAVSLFNEMLNNGIQPDPV-TFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 246 l~~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
+..++.. .|++++|...|+++.+. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999875 34432 2211110 001111111
Q ss_pred CCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 012234 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (468)
.....+...|.+.|++++|+..|+++. ..|+ ...+..+..++.+.|+.++|...++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 122346677889999999999998873 3343 256888899999999999999999999888887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.9e-08 Score=75.27 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=90.3
Q ss_pred CCCC-HhHHHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 307 IQPS-VEHYACMVGVLSRARRISEATEFVSKM-P-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 307 ~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
+.|+ ...+......|.+.|++++|++.|++. . .+.+...|..+..++...|++++|+..++++++.+|.++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4554 456778899999999999999999987 3 344689999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhC
Q 012234 384 ANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
+.+|...|++++|.+.|++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999874
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.7e-08 Score=77.56 Aligned_cols=128 Identities=8% Similarity=-0.015 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGA 353 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 353 (468)
..+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|+..+++.. .+.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555666777788888888888877753 13356677777888888888888888887762 334677888899999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH--HHHcCChHHHHHHHHHHHh
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANL--YSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 405 (468)
...|++++|...++++.+..|.+...+..+..+ +.+.|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988888555554 8888999999999887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.6e-08 Score=80.23 Aligned_cols=171 Identities=9% Similarity=-0.044 Sum_probs=125.2
Q ss_pred HHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC----CHHHHHHH
Q 012234 24 ECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG----SLDYARAL 99 (468)
Q Consensus 24 ~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 99 (468)
+|++.|++.. +. -+...+..+...+...+++++|..+|++..+.| +...+..+..+|.. + +.++|...
T Consensus 4 eA~~~~~~aa-~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQA-EA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHH-HT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHH-HC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4667777776 32 466677777777778888888888888888765 56667777777777 6 78888888
Q ss_pred HhhcCCC-CeehHHHHHHHHHh----cCCHHHHHHHHhhCCCCC-----HhHHHHHHHHHHh----CCChHHHHHHHHHH
Q 012234 100 LDEMSDK-DEVSYSAIISGYMV----HGFVEKAMDLFQVMKRPG-----LSTWNAVISGLVQ----NNRHEAVLDLVREM 165 (468)
Q Consensus 100 ~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~m 165 (468)
|++..++ ++.++..|...|.. .+++++|+..|++..+.+ ...+..|...|.. .+++++|+.+|++.
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8877654 56677777777776 778888888888877632 5677788888877 77888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHcc-C-----ChhhHHHHHHHHHHcC
Q 012234 166 QASGVRPNAVTISSIFSLFSHF-S-----NLKGGKEIHGYAVKNR 204 (468)
Q Consensus 166 ~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 204 (468)
.+. ..+...+..+...|... | +.++|...++...+.|
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 775 23444556666666543 2 7888888888877766
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.5e-08 Score=72.99 Aligned_cols=116 Identities=7% Similarity=-0.037 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYG 352 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 352 (468)
...+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|++.+++.. .+.+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 455666666667777777777777776642 12245666667777777777777777776652 23356778888888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
+...|++++|...++++.+..|.+...+..++.++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888899999999998888888888888888888877664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-07 Score=71.08 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYG 352 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 352 (468)
...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|..+++++. .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 445666667777777777777777777653 13345667777777777788888887777662 23457778888888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999998888888888888888776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-07 Score=76.43 Aligned_cols=124 Identities=12% Similarity=-0.021 Sum_probs=87.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChH
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHE 156 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 156 (468)
+..+...+...|++++|...|++...++...|..+...+...|++++|+..|++... .+...|..+..++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 344566667777777777777777766667777777777777777777777776653 34556777777888888888
Q ss_pred HHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 012234 157 AVLDLVREMQASGVRPN----------------AVTISSIFSLFSHFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 157 ~a~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 204 (468)
+|+..|++..+.. +.+ ...+..+..++...|++++|...++.+.+..
T Consensus 89 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888777642 111 1456667777777777777777777777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-07 Score=72.50 Aligned_cols=117 Identities=8% Similarity=-0.024 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYG 352 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 352 (468)
...+..+...+...|+++.|...+++.... .+.+...+..+...+...|++++|.+.+++.. .+.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666677777788888888888877753 13356677777778888888888888887762 23457788888889
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCCh
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 393 (468)
+...|++++|...++++.+..|.++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=8.4e-08 Score=86.53 Aligned_cols=126 Identities=13% Similarity=0.027 Sum_probs=96.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----------------HhHHHHHHHHHhccCChHHHHHHHHhCC--
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----------------VEHYACMVGVLSRARRISEATEFVSKMP-- 338 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 338 (468)
.+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444455555555555555554432 121 4677888888888899999998888772
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 012234 339 VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEA-DRVREQMKE 405 (468)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 405 (468)
.+.+...|..+..++...|++++|+..|+++++.+|.+..++..++.++.+.|++++| ..+++.|..
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446888999999999999999999999999999999999999999999999999999 446666643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=9.5e-08 Score=74.23 Aligned_cols=101 Identities=12% Similarity=-0.045 Sum_probs=85.6
Q ss_pred CCC-CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 307 IQP-SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 307 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
..| +...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++.+.+|.++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 344 34556667778888999999999988872 344688888999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCC
Q 012234 384 ANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+.+|...|++++|.+.+++..+..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999887643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.4e-08 Score=79.42 Aligned_cols=120 Identities=8% Similarity=0.040 Sum_probs=80.9
Q ss_pred hccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHH-HHHcCCh--H
Q 012234 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYG-ASISGDV--E 360 (468)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~--~ 360 (468)
...|++++|...+++..+. .+.+...+..+...|...|++++|+..|++.. .+.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666666543 12345666666777777777777777776652 22356666667777 6677777 8
Q ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 361 LGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+|...++++.+..|.++.++..++.+|...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-08 Score=88.68 Aligned_cols=189 Identities=10% Similarity=-0.012 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAH 287 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (468)
.+..+...+.+.|++++|+..|++..+ .+...|..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344455555566666666666655442 244556666667777777777777777766542 2245566667777777
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCH-hHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012234 288 SGLVDKAWDIFNAMSGQYGIQPSV-EHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVC 366 (468)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 366 (468)
.|++++|...|++..+. .|+. ..+...+....+......... ........+......+... ..|+.++|.+.+
T Consensus 85 ~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~ 158 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERELEEC 158 (281)
T ss_dssp TTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence 77777777777766543 1211 011111111111111111111 1122233344443333222 368889999999
Q ss_pred HHHHhhCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHhC
Q 012234 367 DHLFEIEPENTGNYIIMANLYSQA-GRWDEADRVREQMKES 406 (468)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 406 (468)
+++.+.+|++......+...+.+. +++++|.++|.++.+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999998877777777777776 7788999999888663
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-07 Score=72.08 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=76.9
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++.+|.++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455666677777788888888777662 23457788888888888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 012234 389 QAGRWDEADRVREQMKESG 407 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~~ 407 (468)
..|++++|...+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 8899988888888887643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-06 Score=77.50 Aligned_cols=61 Identities=7% Similarity=-0.083 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccC-CHHHHHHHHHHhh
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNN----GIQPD-PVTFTAVLSACAHSG-LVDKAWDIFNAMS 302 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 302 (468)
++..+...|...|++++|...+++..+. +..+. ..++..+..++...| ++++|...+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3445555555555555555555554321 11122 345555666666666 3466666555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=69.07 Aligned_cols=99 Identities=14% Similarity=0.035 Sum_probs=82.0
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CcchHHHHHH
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE--NTGNYIIMAN 385 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 385 (468)
+...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34556667777888888888888887762 3346778888888999999999999999999999998 8889999999
Q ss_pred HHHHc-CChHHHHHHHHHHHhCCC
Q 012234 386 LYSQA-GRWDEADRVREQMKESGL 408 (468)
Q Consensus 386 ~~~~~-g~~~~A~~~~~~m~~~~~ 408 (468)
+|.+. |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998877654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-07 Score=70.34 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=81.5
Q ss_pred CCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 309 PSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
.+...+..+...+...|++++|+..|++.. .+.+...|..+...+...|++++|...++++.+.+|.++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 356677777778888888888888887762 234577888888888999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhCC
Q 012234 387 YSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 387 ~~~~g~~~~A~~~~~~m~~~~ 407 (468)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999998887643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-07 Score=70.81 Aligned_cols=95 Identities=11% Similarity=-0.003 Sum_probs=82.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc
Q 012234 313 HYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQA 390 (468)
Q Consensus 313 ~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (468)
.+..+...+.+.|++++|+..|++.. . +.+...|..+..++...|++++|+..++++++.+|.++.++..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34556778889999999999998873 3 346888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 012234 391 GRWDEADRVREQMKESG 407 (468)
Q Consensus 391 g~~~~A~~~~~~m~~~~ 407 (468)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.3e-07 Score=77.39 Aligned_cols=126 Identities=12% Similarity=-0.063 Sum_probs=89.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCH----HHHHHHHHHHH
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSA----KVWGALLYGAS 354 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~ 354 (468)
..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.....|+. ..+..+..++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 33556677778888888888777642 354335555566777888888888888766433332 35677777888
Q ss_pred HcCChHHHHHHHHHHHhhC--CC-CcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 355 ISGDVELGKFVCDHLFEIE--PE-NTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
..|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++....
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 8888888888888877432 33 34467788888888888888888888887643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-07 Score=74.11 Aligned_cols=107 Identities=14% Similarity=0.043 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHH
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYG 352 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~ 352 (468)
...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|++.. . +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 455666666777777777777777777653 12255666667777777777777777776652 2 2346666777777
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
+...|++++|+..|+++++..|++...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 7777777777777777777777666654433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.2e-07 Score=76.96 Aligned_cols=136 Identities=9% Similarity=-0.021 Sum_probs=96.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC--HhHHHHHHHHH
Q 012234 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS--VEHYACMVGVL 321 (468)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 321 (468)
..+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 44556777788888888888776654 344434445555778888888888888765531 1 121 23566778888
Q ss_pred hccCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 012234 322 SRARRISEATEFVSKMP---VKPS--AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 384 (468)
.+.|++++|+..|++.. ..|. .........++...|+.++|...|+++...+|. ..+...|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88999999999888773 1143 346677788888999999999999999999987 66555553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.9e-07 Score=73.21 Aligned_cols=153 Identities=14% Similarity=0.008 Sum_probs=89.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhc---CCCC-CHhHHHHHHHHHhccCCh
Q 012234 252 AHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQY---GIQP-SVEHYACMVGVLSRARRI 327 (468)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~ 327 (468)
..|++++|.++++.+... .......+..+...+...|++++|...+++..... +..| ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345666666643333221 11234455556666666666666666666554311 1111 234455566666677777
Q ss_pred HHHHHHHHhCC----CCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCc----chHHHHHHHHHHcCC
Q 012234 328 SEATEFVSKMP----VKP-S----AKVWGALLYGASISGDVELGKFVCDHLFEIE--PENT----GNYIIMANLYSQAGR 392 (468)
Q Consensus 328 ~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~ 392 (468)
++|...+++.. ..+ + ...+..+...+...|++++|...++++.+.. ..++ .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 77666665541 111 2 3456667777778888888888888777652 1222 235778888888888
Q ss_pred hHHHHHHHHHHHh
Q 012234 393 WDEADRVREQMKE 405 (468)
Q Consensus 393 ~~~A~~~~~~m~~ 405 (468)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.7e-07 Score=75.45 Aligned_cols=96 Identities=15% Similarity=0.019 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
..+..+..+|.+.|++++|+..+++.. .+.+...+..+..++...|++++|+..|+++.+..|.++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 566777788888888888888887762 344678888999999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHhCC
Q 012234 390 AGRWDEAD-RVREQMKESG 407 (468)
Q Consensus 390 ~g~~~~A~-~~~~~m~~~~ 407 (468)
.++.+++. ..++.+...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888777 5555554433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.61 E-value=4e-07 Score=75.32 Aligned_cols=83 Identities=6% Similarity=-0.101 Sum_probs=41.8
Q ss_pred hcCCHHHHHH---HHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChh
Q 012234 120 VHGFVEKAMD---LFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQAS----GVRP-NAVTISSIFSLFSHFSNLK 191 (468)
Q Consensus 120 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 191 (468)
..|++++|.+ .+..-......++..+...+...|++++|...+++.... +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322223445666666666667777776666665541 1111 1234444555555566666
Q ss_pred hHHHHHHHHHH
Q 012234 192 GGKEIHGYAVK 202 (468)
Q Consensus 192 ~a~~~~~~~~~ 202 (468)
+|...+....+
T Consensus 84 ~A~~~~~~al~ 94 (203)
T 3gw4_A 84 AARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.6e-07 Score=69.04 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=88.9
Q ss_pred CCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 309 PSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
.+...+..+...+.+.|++++|...+++. ...| +...+..+...+...|++++|+..++++.+..|.++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34677888899999999999999999987 3344 688999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhC
Q 012234 387 YSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 387 ~~~~g~~~~A~~~~~~m~~~ 406 (468)
|.+.|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998775
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-07 Score=74.15 Aligned_cols=105 Identities=9% Similarity=-0.086 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHH
Q 012234 275 PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYG 352 (468)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~ 352 (468)
...+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|+..|++.. . +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445666777888889999999999888754 13367778888888889999999999888872 3 3457788889999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 012234 353 ASISGDVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
+...|++++|+..|+++.+..|+++....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999988776543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.7e-07 Score=78.60 Aligned_cols=162 Identities=12% Similarity=-0.003 Sum_probs=112.6
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc-----hHHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CC---
Q 012234 41 DGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMD-----LWICNALIGMYAKCGSLDYARALLDEMSD-----KD--- 107 (468)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~--- 107 (468)
....+...+..+...|++++|.+.+...++...... ...+..+...+...|++++|+..|++..+ .+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345666667777778888888888877776543211 12334466667777888888888776542 11
Q ss_pred -eehHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----HhHHHHHHHHHHhCCChHHHHHHHHHHHHCC----CCC
Q 012234 108 -EVSYSAIISGYMVHGFVEKAMDLFQVMKR-----PG-----LSTWNAVISGLVQNNRHEAVLDLVREMQASG----VRP 172 (468)
Q Consensus 108 -~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~p 172 (468)
..+|+.+...|...|++++|...|++..+ ++ ..+++.+..+|...|++++|+..+++..+.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 23677777888888888888888877651 22 2478888889999999999999998876531 111
Q ss_pred -CHHHHHHHHHHHHccCChhhH-HHHHHHHHH
Q 012234 173 -NAVTISSIFSLFSHFSNLKGG-KEIHGYAVK 202 (468)
Q Consensus 173 -~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 202 (468)
-..+|..+..++...|+.++| ...++....
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156778888899999999999 777777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=6.4e-07 Score=67.25 Aligned_cols=97 Identities=21% Similarity=0.259 Sum_probs=88.0
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
...+..+...+...|++++|.++++++. .+.+..++..+...+...|++++|...++++.+..|.++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678888899999999999999999873 34468889999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 012234 389 QAGRWDEADRVREQMKESG 407 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~~ 407 (468)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-07 Score=69.50 Aligned_cols=94 Identities=9% Similarity=0.012 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc-------hHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG-------NYII 382 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~ 382 (468)
..+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..+++++++.|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888888888888888876 2334 5788889999999999999999999999998776543 5777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 012234 383 MANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++.+|...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999998776
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=9.6e-07 Score=65.52 Aligned_cols=108 Identities=12% Similarity=0.002 Sum_probs=58.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGAS 354 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 354 (468)
.+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...+++.. .+.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444455555555666666555555532 12234445555555555555555555555441 1223555555666666
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
..|++++|...++++.+..|.++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666665555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=6.3e-07 Score=66.55 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=87.6
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567778889999999999999999873 34478889999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 012234 389 QAGRWDEADRVREQMKESG 407 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~~ 407 (468)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.6e-05 Score=66.70 Aligned_cols=174 Identities=10% Similarity=0.015 Sum_probs=103.7
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-C
Q 012234 148 GLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKT-G-F 224 (468)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 224 (468)
...+.+..++|++++++++..+ +-+...++.--..+...| .++++..++..+.... +-+..+++.-..++.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3344455567777777777652 223334555555555566 4777777777777654 33444555444444444 5 6
Q ss_pred hHHHHHHHhhccCCCc---chHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---
Q 012234 225 LHGAQRVFDRFKGRSL---IIWTAIISAYAAHGDAS--------KAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL--- 290 (468)
Q Consensus 225 ~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--- 290 (468)
+++++.+++++.+.++ .+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc
Confidence 7788888887776444 45555444444445555 77777887777542 366666666666666654
Q ss_pred ----HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC
Q 012234 291 ----VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR 326 (468)
Q Consensus 291 ----~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 326 (468)
++++++.++++... .+-|...|+.+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 56777777776643 13356666665555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-06 Score=68.61 Aligned_cols=95 Identities=12% Similarity=0.001 Sum_probs=58.1
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKM-PVKPS----AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|+..++++.+..|.++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 444555555555566666666655554 23444 4555556666666666666666666666666666666666666
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 012234 386 LYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~ 405 (468)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=7.5e-08 Score=84.48 Aligned_cols=97 Identities=12% Similarity=-0.076 Sum_probs=64.1
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 012234 5 DIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALI 84 (468)
Q Consensus 5 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 84 (468)
+...+..+...+.+.|++++|+..|++.. ... +.+...|..+..++...|++++|...+++.++..+. +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAI-TRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34556667777777777777777777776 321 235556666666777777777777777777665432 556666677
Q ss_pred HHHHhCCCHHHHHHHHhhcC
Q 012234 85 GMYAKCGSLDYARALLDEMS 104 (468)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~ 104 (468)
.+|...|++++|...|++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.6e-07 Score=67.32 Aligned_cols=111 Identities=7% Similarity=-0.094 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGA 353 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~ 353 (468)
..+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44556666777778888888888877753 13356777777888888888888888887762 2 33577888888889
Q ss_pred HHcCChHHHHHHHHHHHhhC------CCCcchHHHHHHHHH
Q 012234 354 SISGDVELGKFVCDHLFEIE------PENTGNYIIMANLYS 388 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~ 388 (468)
...|++++|+..++++.+.+ |.+..+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 777777776666543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.9e-07 Score=72.20 Aligned_cols=127 Identities=7% Similarity=0.083 Sum_probs=99.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH-HhccCCh--
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV-LSRARRI-- 327 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~-- 327 (468)
...|++++|...+++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888988888887753 3467788888899999999999999999988642 3356777778888 7788998
Q ss_pred HHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 328 SEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 328 ~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
++|...++++. . +.+...+..+...+...|++++|...++++.+..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999998872 3 34578888999999999999999999999999999876543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.7e-07 Score=69.90 Aligned_cols=100 Identities=6% Similarity=-0.092 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGA 353 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 353 (468)
..+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|+..|++.. ..| ++..|..+..++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 34555666677777777777777777753 12356677777777777777777777777762 233 467777888888
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCc
Q 012234 354 SISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
...|++++|+..|+++++..|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888887653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-06 Score=67.25 Aligned_cols=112 Identities=11% Similarity=0.001 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHH
Q 012234 274 DPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWG 347 (468)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~ 347 (468)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|+..+++.. . +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 455666677777777888888888877773 3454 5667777777888888888888887662 2 33577888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
.+..++...|++++|...++++.+..|.+..++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88889999999999999999999999988877777666543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.54 E-value=6.5e-07 Score=69.41 Aligned_cols=109 Identities=11% Similarity=-0.076 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 012234 276 VTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGA 353 (468)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 353 (468)
..+..+...+...|++++|...|+++... -+.+...|..+..+|.+.|++++|+..|++.. .+.++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555666777888888888888888754 13356777788888888888888888888762 234567788888999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
...|++++|...++++.+..|.++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999988887665544333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-06 Score=69.47 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=62.9
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
+...+..+...+.+.|++++|+..|++.. . +.+...|..+..++...|++++|+..++++++.+|.++..+..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455566666666677777776666652 2 235666666666666677777777777777666666666666677777
Q ss_pred HHcCChHHHHHHHHHHHhC
Q 012234 388 SQAGRWDEADRVREQMKES 406 (468)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~ 406 (468)
...|++++|...+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7777777777666666553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=66.38 Aligned_cols=98 Identities=16% Similarity=0.077 Sum_probs=88.4
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
+...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677888899999999999999999873 3446888999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhCC
Q 012234 388 SQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~~ 407 (468)
.+.|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-06 Score=67.05 Aligned_cols=62 Identities=6% Similarity=-0.045 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHc
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKN 203 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 203 (468)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+....+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555566666666666666666665542 223445555555555555555555555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00013 Score=64.84 Aligned_cols=85 Identities=5% Similarity=-0.112 Sum_probs=39.6
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccC-ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-C-CHH
Q 012234 18 QGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSS-DIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC-G-SLD 94 (468)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 94 (468)
+.+..++|+++++.+. ..+ +-+...|+.--..+...| .++++++.++.++...++ +..+|+.-..++.+. + +.+
T Consensus 66 ~~e~se~AL~lt~~~L-~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIV-RMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHH-HhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 3344455555555555 322 122233444333444444 355555555555555433 444555444444443 4 445
Q ss_pred HHHHHHhhcCC
Q 012234 95 YARALLDEMSD 105 (468)
Q Consensus 95 ~A~~~~~~~~~ 105 (468)
+++.+++.+.+
T Consensus 143 ~EL~~~~k~L~ 153 (349)
T 3q7a_A 143 SEIEYIHGSLL 153 (349)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=7.9e-07 Score=68.86 Aligned_cols=63 Identities=13% Similarity=-0.007 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CCCCcchH----HHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEI-------EPENTGNY----IIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++.++.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 48888889999999999999999999999 99999999 99999999999999999999998764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-06 Score=66.19 Aligned_cols=113 Identities=7% Similarity=-0.127 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 012234 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALL 350 (468)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~ 350 (468)
.+...+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++.. .+.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35667777777888888888888888887754 13356777778888888888888888887762 234577888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCC-----CcchHHHHHHHH
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPE-----NTGNYIIMANLY 387 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~ 387 (468)
.++...|++++|+..++++.+..|+ +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988776 444444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=66.24 Aligned_cols=90 Identities=12% Similarity=0.107 Sum_probs=56.1
Q ss_pred HHHHHhccCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---cchHHHHHHHHH
Q 012234 317 MVGVLSRARRISEATEFVSKMP-VKPS-A---KVWGALLYGASISGDVELGKFVCDHLFEIEPEN---TGNYIIMANLYS 388 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 388 (468)
+...+...|++++|...|+++. ..|+ . ..+..+..++...|++++|...++++.+..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3444555566666666555541 1221 2 355566666667777777777777777777766 555677777777
Q ss_pred HcCChHHHHHHHHHHHhC
Q 012234 389 QAGRWDEADRVREQMKES 406 (468)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~ 406 (468)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777776654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.4e-06 Score=75.93 Aligned_cols=163 Identities=8% Similarity=-0.110 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhh---cCCCCC-HhH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNN-GIQPDP----VTFTAVLSACAHSGLVDKAWDIFNAMSGQ---YGIQPS-VEH 313 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~ 313 (468)
+..++..|...|++++|.+.+..+... +..++. .+.+.+...+...|+++.+..+++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666666777777777666665431 111111 12222333344556777777766655431 122222 345
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC----cc
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP-------VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIE---PEN----TG 378 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~ 378 (468)
+..+...|...|++++|..+++++. .++ ...++..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6667777777777777777776551 112 14466667777777777777777777776552 221 13
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 379 NYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666667777777777776665543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-07 Score=68.39 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=55.5
Q ss_pred cCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHH
Q 012234 324 ARRISEATEFVSKMP-V---KP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 398 (468)
.|++++|+..|++.. . .| +...+..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666665552 2 13 345666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 012234 399 VREQMKES 406 (468)
Q Consensus 399 ~~~~m~~~ 406 (468)
.+++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.40 E-value=4.1e-06 Score=78.88 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=77.5
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
...|..+..+|.+.|++++|+..+++.. .+.+...|..+..+|...|++++|+..|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4677888888999999999999998872 34468899999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHH-HHHHHHh
Q 012234 389 QAGRWDEADR-VREQMKE 405 (468)
Q Consensus 389 ~~g~~~~A~~-~~~~m~~ 405 (468)
+.|++++|.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998874 4555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-06 Score=65.74 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------cchHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN-------TGNYII 382 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~ 382 (468)
..+..+...+...|++++|...|++.. .+.+...+..+...+...|++++|...++++.+..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456666777777788888887777662 33467778888888888999999999999998887665 778889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC
Q 012234 383 MANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
++.+|.+.|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988774
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=68.89 Aligned_cols=64 Identities=14% Similarity=0.086 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
...|..+..++...|++++|+..++++++.+|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4677788888888889999999999888888888888888999999999999999888887764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=83.15 Aligned_cols=119 Identities=8% Similarity=-0.007 Sum_probs=92.5
Q ss_pred HHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 012234 282 LSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDV 359 (468)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 359 (468)
...+...|++++|...+++..+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33456778888888888888754 1234677888888888888888888888877 2344 578888899999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHH--HHHcCChHHHHHHHHH
Q 012234 360 ELGKFVCDHLFEIEPENTGNYIIMANL--YSQAGRWDEADRVREQ 402 (468)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 402 (468)
++|++.++++.+..|.+...+..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999888888 8888999999998873
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.34 E-value=6.4e-06 Score=62.26 Aligned_cols=110 Identities=6% Similarity=-0.058 Sum_probs=68.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-----CCCC----HHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-----VKPS----AKVWG 347 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~----~~~~~ 347 (468)
.+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++.. ..++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444555555566666666666655543 12244555555666666666666666665541 1122 56677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
.+...+...|++++|...++++.+..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 778888888888888888888888877 56666666655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-06 Score=61.40 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=65.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC---CHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP---SAKVWGALLYG 352 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~---~~~~~~~l~~~ 352 (468)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++.. ..| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4445555666666777777766666643 12345566666666777777777777776652 222 46677777777
Q ss_pred HHHc-CChHHHHHHHHHHHhhCCCCc
Q 012234 353 ASIS-GDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 353 ~~~~-g~~~~a~~~~~~~~~~~~~~~ 377 (468)
+... |++++|.+.++++....|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7788 888888888888887777654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.7e-06 Score=65.20 Aligned_cols=129 Identities=15% Similarity=-0.001 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC----CCCC----HH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEHYACMVGVLSRARRISEATEFVSKMP----VKPS----AK 344 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~ 344 (468)
++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.. ..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555566666666666555432100011 1345556666667777777777666541 1111 44
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC------CCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEP------ENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++..+...+...|++++|...++++.+..+ ....++..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777788888888888888888876521 1234678889999999999999999988765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-05 Score=60.37 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=68.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCC-H---hHHHHHHHHHhccCChHHHHHHHHhCC-CCC-C---HHHHHHHHH
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPS-V---EHYACMVGVLSRARRISEATEFVSKMP-VKP-S---AKVWGALLY 351 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~---~~~~~~l~~ 351 (468)
+...+...|++++|...|+++.+. .|+ . ..+..+..++.+.|++++|...|+++. ..| + ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 444556667777777777766653 222 2 355566667777777777777776652 222 2 566777788
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
++...|++++|...++++.+..|+++........
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8888899999999999998888877655544433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=65.18 Aligned_cols=96 Identities=11% Similarity=-0.120 Sum_probs=63.5
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 012234 7 VSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGM 86 (468)
Q Consensus 7 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (468)
..+..+...+.+.|++++|+..|++.. ... |.+...|..+..++...|++++|...+++.++..+. +...+..+..+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~ 94 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVC-QKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 94 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 345556666677777777777777776 322 335556666666777777777777777777776543 55566667777
Q ss_pred HHhCCCHHHHHHHHhhcCC
Q 012234 87 YAKCGSLDYARALLDEMSD 105 (468)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~ 105 (468)
+...|++++|+..|++..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-06 Score=77.69 Aligned_cols=145 Identities=8% Similarity=-0.012 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (468)
.+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ . ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 4555566666777777777777776653 333321 22233333332221 1 12667778888
Q ss_pred hccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH-HcCChHHHHH
Q 012234 322 SRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS-QAGRWDEADR 398 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~ 398 (468)
.+.|++++|+..+++.. . +.+...|..+..++...|++++|+..|++++++.|.++.++..+..+.. ..+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887762 2 3367788888888888888888888888888888888888888877743 4566777777
Q ss_pred HHHHHHhC
Q 012234 399 VREQMKES 406 (468)
Q Consensus 399 ~~~~m~~~ 406 (468)
+|++|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77777554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-05 Score=72.54 Aligned_cols=129 Identities=9% Similarity=-0.055 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcC
Q 012234 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPD--------------PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYG 306 (468)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (468)
..+..+...+.+.|++++|+..|++......... ...+..+..++.+.|++++|...++++.+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-- 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4566666777777777777777777766422111 467778888888888888888888888864
Q ss_pred CCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 012234 307 IQPSVEHYACMVGVLSRARRISEATEFVSKMP-VK-PSAKVWGALLYGASISGDVELG-KFVCDHLFE 371 (468)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 371 (468)
.+.+...+..+..+|...|++++|+..|++.. .. .+...+..+..++...|+.++| ...++++..
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13367778888888888899999988888772 33 3577888888888888888887 445665543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.30 E-value=6.3e-06 Score=75.14 Aligned_cols=90 Identities=9% Similarity=0.024 Sum_probs=79.0
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++.++.|.+..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888889999999999999999887 3444 5788999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHH
Q 012234 388 SQAGRWDEADRV 399 (468)
Q Consensus 388 ~~~g~~~~A~~~ 399 (468)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00018 Score=63.55 Aligned_cols=78 Identities=8% Similarity=0.029 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--ChHHHHHHHhhccC---CCcchHHHHHHHHHHcCC-hHHHHHHHH
Q 012234 191 KGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG--FLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGD-ASKAVSLFN 264 (468)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~-~~~a~~~~~ 264 (468)
+++..++..+.... +-+..+++.-.-++...| .+++++.+++++.+ +|..+|+.-.-++...|. ++++++.+.
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444444433 223333333333333333 24555555555443 233444444444444454 355555555
Q ss_pred HHHHC
Q 012234 265 EMLNN 269 (468)
Q Consensus 265 ~m~~~ 269 (468)
++++.
T Consensus 170 ~~I~~ 174 (331)
T 3dss_A 170 SLITR 174 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=66.52 Aligned_cols=63 Identities=11% Similarity=-0.050 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.++..+..++...|++++|+..++++.+..|.++.++..++.+|...|++++|...+++..+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999999999999999999999999999998775
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.24 E-value=7.7e-06 Score=58.80 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.+...+..+...+...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367889999999999999999999999999999999999999999999999999999999988764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00042 Score=61.20 Aligned_cols=179 Identities=11% Similarity=0.075 Sum_probs=128.9
Q ss_pred hHHHHHHHhhccC---CCcchHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 012234 225 LHGAQRVFDRFKG---RSLIIWTAIISAYAAHG--DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGL-VDKAWDIF 298 (468)
Q Consensus 225 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 298 (468)
+++++.+++.+.. .+..+|+.-.-.+...| .+++++.+++++.+.. +-|...|+.-.-++...|. +++++..+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777664 45567877777777877 4899999999999864 3367777766666777777 68999999
Q ss_pred HHhhhhcCCCCCHhHHHHHHHHHhcc--------------CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc------
Q 012234 299 NAMSGQYGIQPSVEHYACMVGVLSRA--------------RRISEATEFVSKMP--VKPSAKVWGALLYGASIS------ 356 (468)
Q Consensus 299 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~------ 356 (468)
+++.+.. +-|...|+.....+.+. +.++++++.+.+.- .+-|...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998752 34667777666555544 45788888888772 344677887665555554
Q ss_pred -----CChHHHHHHHHHHHhhCCCCcchHHHHHHHH---HHcCChHHHHHHHHHHHhC
Q 012234 357 -----GDVELGKFVCDHLFEIEPENTGNYIIMANLY---SQAGRWDEADRVREQMKES 406 (468)
Q Consensus 357 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~ 406 (468)
+.++++++.+.++.+..|++.-.+..++... ...|..+++...+.++++.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578999999999999998854444443322 2457788889999998863
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=75.65 Aligned_cols=125 Identities=13% Similarity=0.118 Sum_probs=99.8
Q ss_pred HHhccCCHHHHHHHHHHhhhhc--CCC---C-CHhHHHHHHHHHhccCChHHHHHHHHhCC---------CCCC-HHHHH
Q 012234 284 ACAHSGLVDKAWDIFNAMSGQY--GIQ---P-SVEHYACMVGVLSRARRISEATEFVSKMP---------VKPS-AKVWG 347 (468)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~--~~~---p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~~~ 347 (468)
.+...|++++|+.++++..+.. -+. | ...+++.|...|...|++++|+.++++.- ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999988776431 112 2 24678899999999999999999988761 3444 56889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh-----CCCCcch---HHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 348 ALLYGASISGDVELGKFVCDHLFEI-----EPENTGN---YIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 348 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
.|...|...|++++|+.++++++++ +|++|.+ ...+..++...|++++|..+++++++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875 6777655 45778888899999999999999987553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.3e-06 Score=66.37 Aligned_cols=77 Identities=14% Similarity=-0.000 Sum_probs=62.7
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-chHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT-GNYIIMANLY 387 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~ 387 (468)
...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++...|++++|...++++++++|.++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4577788888899999999999888772 3 44688899999999999999999999999999999887 4455554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-05 Score=74.34 Aligned_cols=115 Identities=9% Similarity=-0.013 Sum_probs=55.6
Q ss_pred HHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 012234 218 TYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKA 294 (468)
Q Consensus 218 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 294 (468)
.+.+.|++++|...|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455566666666555433 233455555555666666666666665555542 22344555555555556666666
Q ss_pred HHHHHHhhhhcCCCCCHhHHHHHHHH--HhccCChHHHHHHHH
Q 012234 295 WDIFNAMSGQYGIQPSVEHYACMVGV--LSRARRISEATEFVS 335 (468)
Q Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~A~~~~~ 335 (468)
...|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66665555431 1122233333333 445555555555555
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.8e-05 Score=71.75 Aligned_cols=158 Identities=6% Similarity=-0.032 Sum_probs=115.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCH
Q 012234 248 SAYAAHGDASKAVSLFNEMLNNGIQPD----------------PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSV 311 (468)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 311 (468)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|...+..+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667777777777777766422111 1246778899999999999999999887543322322
Q ss_pred ----hHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------
Q 012234 312 ----EHYACMVGVLSRARRISEATEFVSKM-------PVKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIE------ 373 (468)
Q Consensus 312 ----~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 373 (468)
.+.+.+...+...|+.++|.+++++. ...+. ..++..+...+...|++++|..+++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 22334444556778999999888765 22333 5678889999999999999999999987651
Q ss_pred CCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 374 PENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 374 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
+....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345788999999999999999999988765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.4e-06 Score=63.55 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHhhhhcCC-CC-CHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHH
Q 012234 288 SGLVDKAWDIFNAMSGQYGI-QP-SVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
.|++++|+..|++..+. +. .| +...+..+...|...|++++|+..|++.. . +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777642 10 13 35566777777788888888888877762 2 335777888888888899999999
Q ss_pred HHHHHHHhhCCCCcchH
Q 012234 364 FVCDHLFEIEPENTGNY 380 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~ 380 (468)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999888888876544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-05 Score=58.94 Aligned_cols=61 Identities=7% Similarity=-0.053 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVK 202 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 202 (468)
++..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|...+...++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555555556666666666665555432 22334444445555555555555555544443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-05 Score=63.09 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC----HhH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGI-QPD----PVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS----VEH 313 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~ 313 (468)
+..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|...+++......-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 44445555555666666665555443210 011 134555666666667777777666665432110111 334
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP----VKP----SAKVWGALLYGASISGDVELGKFVCDHLFEIE 373 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 373 (468)
+..+...+...|++++|.+.+++.. ... ...++..+...+...|++++|...++++.+..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566666777777777777666541 011 13456777778888888888888888877653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.12 E-value=6.1e-06 Score=63.88 Aligned_cols=103 Identities=15% Similarity=0.028 Sum_probs=70.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCC-------------HhHHHHHHHHHhccCChHHHHHHHHhC-CC-------
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPS-------------VEHYACMVGVLSRARRISEATEFVSKM-PV------- 339 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~------- 339 (468)
....+.+.|++++|+..|++..+- .|+ ...|..+..++.+.|++++|+..+++. ..
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445555555555555555532 222 226667777777777777777766655 23
Q ss_pred CCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 340 KPS-AKVW----GALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 340 ~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
.|+ ...| .....++...|++++|+..|++++++.|.+......+..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 675 5677 8999999999999999999999999999887766555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=6.6e-06 Score=60.26 Aligned_cols=92 Identities=8% Similarity=-0.036 Sum_probs=72.6
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------cchHH
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN------TGNYI 381 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 381 (468)
+...+..+...+.+.|++++|++.|++.. .+.+...+..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34566777778888888888888887762 33467888888999999999999999999999999988 67777
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 012234 382 IMANLYSQAGRWDEADRVRE 401 (468)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~ 401 (468)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00017 Score=69.56 Aligned_cols=169 Identities=8% Similarity=0.027 Sum_probs=131.0
Q ss_pred ChHHHHHHHhhccCC---CcchHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 012234 224 FLHGAQRVFDRFKGR---SLIIWTAIISAYAAHGD----------ASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG- 289 (468)
Q Consensus 224 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~- 289 (468)
..++|++.++++... +..+|+.-..++...|+ +++++..++++.+.. +-+...|..-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345678888777653 33567666666666666 899999999998863 336677777777777888
Q ss_pred -CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc---------
Q 012234 290 -LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRAR-RISEATEFVSKMP-VKP-SAKVWGALLYGASIS--------- 356 (468)
Q Consensus 290 -~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~--------- 356 (468)
++++++..++++.+. -+-+...|+.-...+.+.| .++++++.++++- ..| +...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999865 1346778877777777888 8899999998883 344 678888877776663
Q ss_pred -----CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHH
Q 012234 357 -----GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDE 395 (468)
Q Consensus 357 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 395 (468)
+.++++.+.+.++...+|.+..+|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999888554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.8e-05 Score=57.41 Aligned_cols=77 Identities=10% Similarity=0.010 Sum_probs=63.5
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 330 ATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 330 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|+..|++. ...| +...+..+...+...|++++|+..++++++.+|.+...+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555544 2233 57788888889999999999999999999999999999999999999999999999999888764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.3e-05 Score=54.83 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=60.3
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 311 VEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
...+..+...+...|++++|+..+++.. .+.+...+..+...+...|++++|...++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456666677777777777777777652 23356777778888888888888888888888888888888888888776
Q ss_pred HcC
Q 012234 389 QAG 391 (468)
Q Consensus 389 ~~g 391 (468)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.9e-05 Score=71.11 Aligned_cols=151 Identities=9% Similarity=-0.049 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 012234 210 YVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG 289 (468)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 289 (468)
..+..+...+.+.|++++|...|++....++... .+...|+..++...+. ...+..+..++.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 4566778888899999999999998764322211 1222333344333221 136677888889999
Q ss_pred CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHH-HHHcCChHHHHHHH
Q 012234 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS-AKVWGALLYG-ASISGDVELGKFVC 366 (468)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~-~~~~g~~~~a~~~~ 366 (468)
++++|+..+++..+. .+.+...+..+..+|...|++++|+..|++.. ..|+ ...+..+... ....+..+.+...|
T Consensus 245 ~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp CCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988864 13367788888999999999999999998873 4553 4455555544 33456778888899
Q ss_pred HHHHhhCCCCc
Q 012234 367 DHLFEIEPENT 377 (468)
Q Consensus 367 ~~~~~~~~~~~ 377 (468)
.++....|.++
T Consensus 323 ~~~l~~~p~~~ 333 (338)
T 2if4_A 323 KGIFKGKDEGG 333 (338)
T ss_dssp -----------
T ss_pred HHhhCCCCCCC
Confidence 99988887654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.1e-05 Score=52.91 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 340 KPSAKVWGALLYGASISGD---VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 340 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
++++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577888888888876655 799999999999999999999999999999999999999999999886543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00012 Score=56.01 Aligned_cols=111 Identities=11% Similarity=-0.055 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 012234 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFV 365 (468)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 365 (468)
++++|...|++..+. | .|... |...|...+.+++|.++|++.....++..+..|...|.. .+++++|...
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455666666665543 2 22222 555555555666666666665333456666666666666 6677777777
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHhCCC
Q 012234 366 CDHLFEIEPENTGNYIIMANLYSQ----AGRWDEADRVREQMKESGL 408 (468)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 408 (468)
|+++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777665 356677778888877 7788888888887777664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.95 E-value=4.8e-05 Score=71.59 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
...|..+..++.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|+..|++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57888999999999999999999999999999999999999999999999999999999998754
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-05 Score=62.48 Aligned_cols=84 Identities=10% Similarity=-0.002 Sum_probs=62.4
Q ss_pred cCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 324 ARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGD----------VELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
.+.+++|++.+++.. . +.+...|..+..++...++ +++|+..|+++++++|++..+|..++.+|.+.|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344555555555441 2 2245555555555555544 579999999999999999999999999999875
Q ss_pred -----------ChHHHHHHHHHHHhCC
Q 012234 392 -----------RWDEADRVREQMKESG 407 (468)
Q Consensus 392 -----------~~~~A~~~~~~m~~~~ 407 (468)
++++|++.|++.++..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8999999999998754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.91 E-value=5e-07 Score=81.48 Aligned_cols=238 Identities=12% Similarity=0.146 Sum_probs=175.7
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012234 6 IVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIG 85 (468)
Q Consensus 6 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (468)
+..|..|..+..+.++..+|++.|=+. -|+..|..++.++.+.|.+++-.+.+.-..+..- ++.+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 456888999999999999988876322 4566788999999999999999998877666533 4444568999
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------CCHhH
Q 012234 86 MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR------------------------PGLST 141 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~ 141 (468)
+|++.+++.+-++++ ..|+..-...+..-|...|.++.|.-+|..+.. .++.|
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 999999987654332 236676777888888888888888888877642 56678
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 012234 142 WNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAK 221 (468)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (468)
|-.+..+|...+.+.-|.-.--.++ +.||. ...++..|...|.+++...+++...... +....+|+.|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 9999999999998887755544443 23332 3345667888999999999888777432 5678889988888887
Q ss_pred cCChHHHHHHHhhccC-----------CCcchHHHHHHHHHHcCChHHHHHH
Q 012234 222 TGFLHGAQRVFDRFKG-----------RSLIIWTAIISAYAAHGDASKAVSL 262 (468)
Q Consensus 222 ~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (468)
- +.++..+.++-..+ .....|.-++-.|.+-.+++.|...
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 5 55666666655433 1345788899999998888877643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=4.6e-05 Score=55.59 Aligned_cols=66 Identities=15% Similarity=0.042 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+...+..+...+...|++++|+..++++++..|.++.++..++.+|.+.|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999998754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00013 Score=66.33 Aligned_cols=89 Identities=8% Similarity=-0.025 Sum_probs=59.4
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 012234 139 LSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDT 218 (468)
Q Consensus 139 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (468)
..+|..+..+|.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...++.+.+.. +.+..+...+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3467777777888888888888888877653 3355667777777777777777777777777654 2344555555555
Q ss_pred HHhcCChHHHH
Q 012234 219 YAKTGFLHGAQ 229 (468)
Q Consensus 219 ~~~~g~~~~a~ 229 (468)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=50.51 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+...+..+...+...|++++|+..++++.+..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788888999999999999999999999999999999999999999999999999999988753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00025 Score=66.71 Aligned_cols=62 Identities=6% Similarity=-0.045 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLN-----NGI-QPD-PVTFTAVLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
+++.|...|...|++++|..++++..+ .|. .|+ ..+...+..++...+.+++|+.++.++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666677777777666666542 121 122 23445555666677777778777777765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0013 Score=50.17 Aligned_cols=112 Identities=9% Similarity=-0.009 Sum_probs=90.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc----cCChHH
Q 012234 254 GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----ARRISE 329 (468)
Q Consensus 254 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~ 329 (468)
+++++|+.+|++..+.| .|+.. +...|...+.+++|...|++..+. .++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999988887 44444 666777778888899999988764 456777778888877 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 012234 330 ATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 330 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 374 (468)
|.++|++.....++..+..|...|.. .++.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988545678888888888888 8899999999999988753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0014 Score=63.24 Aligned_cols=150 Identities=12% Similarity=0.074 Sum_probs=121.3
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC----------HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 254 GDASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAHSGL----------VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 254 g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
...++|++.++++... .|+ ...|+.--.++...|+ +++++..++.+.+. -+.+..+|..-.-.+.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3457889999999885 444 4556655555556666 89999999999864 2446778887777888
Q ss_pred ccC--ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHc-------
Q 012234 323 RAR--RISEATEFVSKMP--VKPSAKVWGALLYGASISG-DVELGKFVCDHLFEIEPENTGNYIIMANLYSQA------- 390 (468)
Q Consensus 323 ~~~--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 390 (468)
+.+ +++++++.++++- .+-+..+|+.-...+...| .++++.+.++++.+.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 888 7799999999983 4457889999888888999 899999999999999999999999999998884
Q ss_pred -------CChHHHHHHHHHHHhCC
Q 012234 391 -------GRWDEADRVREQMKESG 407 (468)
Q Consensus 391 -------g~~~~A~~~~~~m~~~~ 407 (468)
++++++++.+++.+...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC
Confidence 56789999988887643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0003 Score=51.67 Aligned_cols=80 Identities=10% Similarity=-0.020 Sum_probs=53.7
Q ss_pred HHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 294 AWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFE 371 (468)
Q Consensus 294 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 371 (468)
|...|++..+. .+.+...+..+...|...|++++|+..|++.. .+.+...|..+..++...|++++|...++++.+
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556665532 12345666677777777777777777777652 233466777777888888888888888888877
Q ss_pred hCCC
Q 012234 372 IEPE 375 (468)
Q Consensus 372 ~~~~ 375 (468)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00026 Score=65.49 Aligned_cols=83 Identities=8% Similarity=-0.037 Sum_probs=66.8
Q ss_pred ccCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCcc---hHHHHH
Q 012234 323 RARRISEATEFVSKMP---------VKPS-AKVWGALLYGASISGDVELGKFVCDHLFEI-----EPENTG---NYIIMA 384 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~---~~~~l~ 384 (468)
..|++++|+.++++.- ..|+ ..+++.|..+|...|++++|+.+++++++. +|+++. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3567888888776641 2333 467889999999999999999999998875 455554 588999
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 012234 385 NLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998876
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00078 Score=62.35 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=80.8
Q ss_pred HHHHhccCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCcc---h
Q 012234 318 VGVLSRARRISEATEFVSKMP------VKPS----AKVWGALLYGASISGDVELGKFVCDHLFEI-----EPENTG---N 379 (468)
Q Consensus 318 ~~~~~~~~~~~~A~~~~~~~~------~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~---~ 379 (468)
+..+.+.|++++|+.++++.- ..|+ ..+++.++.+|...|++++|+.+++++++. +|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677777777776541 1222 457788888888889999998888888764 455544 5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMKESGLAKIPGRSWIECSGGLQSFVAKDTSGDKSEQIYLILERLLGLMR 451 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (468)
++.|+.+|...|++++|..++++..+--.. .-...||...+++..+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 778899999999999999998888662110 123358888777777776666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00036 Score=49.53 Aligned_cols=55 Identities=24% Similarity=0.389 Sum_probs=30.9
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPENTG-NYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..+...|++++|+..++++.+..|.++. .+..++.+|...|++++|.+.+++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555555555555 555555555555555555555555554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.019 Score=42.15 Aligned_cols=141 Identities=9% Similarity=0.109 Sum_probs=103.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (468)
+.-.|..++..++..+.... .+..-+|.++--....-+-+-..+.++.+-+-+.+. ..|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 34568888888888887764 255566666665556666666677777765543322 2344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 330 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
....+-.+ ..+....+..+.....+|+-+.-.+++..+...+++++.....++.+|.+.|+..+|.+++.+.-+.|++
T Consensus 80 Vi~C~~~~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55544444 2345556777888899999999999999987788889999999999999999999999999999999985
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0018 Score=49.41 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=30.1
Q ss_pred CCHhHHHHHHHHHhccC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 309 PSVEHYACMVGVLSRAR---RISEATEFVSKMP-VK-P--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 309 p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
++..+...+.-++++.+ +.++++.++++.- .. | +...+..+.-++.+.|++++|.+.++.+++.+|+|
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 34444444444444444 3334444444431 11 2 13334444444455555555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00021 Score=55.12 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC----------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-
Q 012234 290 LVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR----------ISEATEFVSKM-PVKP-SAKVWGALLYGASIS- 356 (468)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~- 356 (468)
.+++|...+++..+.. +.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3444444444444320 1234444444444444433 34555555554 2333 355666666666554
Q ss_pred ----------CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 357 ----------GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 357 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
|++++|++.|+++++++|++......+- ..++|.++.-.+...+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHSSS
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCccccccc
Confidence 5899999999999999998753322221 23445666555555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.016 Score=58.69 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=103.6
Q ss_pred hccCChHHHHH-HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHH
Q 012234 53 GQSSDIVFGME-VHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLF 131 (468)
Q Consensus 53 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 131 (468)
...++++.|.+ ++.. ++ +......++..+.+.|..+.|.++.+.- ..-.......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHH
Confidence 44667777655 4311 11 1223366777788888888888765321 11133456778888888888
Q ss_pred hhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhH
Q 012234 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYV 211 (468)
Q Consensus 132 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 211 (468)
+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+....+.+.....| -
T Consensus 676 ~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~ 738 (814)
T 3mkq_A 676 TDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------K 738 (814)
T ss_dssp TTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------C
T ss_pred Hhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------c
Confidence 776 3567888889999999999999998887743 3445555555777776666655555544 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 012234 212 ATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 212 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (468)
++....+|.+.|++++|++++ .+.+++++|..+-+.
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 233444566667777766554 445667777765544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0018 Score=59.80 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=73.2
Q ss_pred ccCCHHHHHHHHHHhhhhc--CCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC---------CCCC-HHHHHHHH
Q 012234 287 HSGLVDKAWDIFNAMSGQY--GIQPS----VEHYACMVGVLSRARRISEATEFVSKMP---------VKPS-AKVWGALL 350 (468)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~~~~l~ 350 (468)
..|++++|+.++++..+.. -+.|+ ..+++.|...|...|++++|+.++++.- ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4678899999988776421 12222 4678889999999999999999998761 3444 46789999
Q ss_pred HHHHHcCChHHHHHHHHHHHhh-----CCCCcchH
Q 012234 351 YGASISGDVELGKFVCDHLFEI-----EPENTGNY 380 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~ 380 (468)
..|...|++++|+.++++++++ +|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999875 67776544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0019 Score=45.60 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=57.7
Q ss_pred HHHHHhccCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCCh
Q 012234 317 MVGVLSRARRISEATEFVSKMP-VKP-SAK-VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 393 (468)
....+.+.|++++|+..+++.. ..| +.. .+..+..++...|++++|+..|+++.+.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4456677788888888887762 233 566 88888888999999999999999999999988876632 344
Q ss_pred HHHHHHHHHH
Q 012234 394 DEADRVREQM 403 (468)
Q Consensus 394 ~~A~~~~~~m 403 (468)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0036 Score=57.95 Aligned_cols=102 Identities=9% Similarity=-0.027 Sum_probs=77.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhc--CCCCC----HhHHHHHHHHHhccCChHHHHHHHHhCC---------CCCC-HH
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQY--GIQPS----VEHYACMVGVLSRARRISEATEFVSKMP---------VKPS-AK 344 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~ 344 (468)
.+..+...|++++|+.++++..+.. -+.|+ ..+++.|...|...|++++|+.+++++- ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3445667889999999998887431 12222 4568888999999999999999988761 3443 46
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCcchHHH
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEI-----EPENTGNYII 382 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 382 (468)
+++.|...|...|++++|+.+++++++. +|++|.+-..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 7899999999999999999999999875 6777765443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0013 Score=46.76 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
.+..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444445555555555555555554432 1123344445555555555555555555444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.016 Score=51.45 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.++.++..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3455555555555555666666666666666653 3444555556666666666666666555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.038 Score=55.98 Aligned_cols=167 Identities=15% Similarity=0.180 Sum_probs=111.4
Q ss_pred HHhcCCChhHHHH-HHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 012234 15 GYSQGGFYEECKA-LFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSL 93 (468)
Q Consensus 15 ~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 93 (468)
.....+++++|.+ ++..+ |+......++..+.+.|.++.|+++.+ +.. .-.......|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence 3345788888877 44221 212233777778888899998887652 111 123445678999
Q ss_pred HHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 012234 94 DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPN 173 (468)
Q Consensus 94 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 173 (468)
+.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.....|-
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--- 738 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAETTGK--- 738 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---
Confidence 99999988774 567899999999999999999999998865 44555566667777776666555554431
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhc
Q 012234 174 AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRF 235 (468)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 235 (468)
+.....++.+.|++++|.+ +|.+.+++++|..+-+..
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~----------------------~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKD----------------------LLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHH----------------------HHHHTTCHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHcCCHHHHHH----------------------HHHHcCChHHHHHHHHHh
Confidence 2333334455566655544 455667777777765553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.011 Score=42.21 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP---------VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
.-+..+...+.+.|++..|..+|+... ..+...++..+..++.+.|+++.|...++++.+..|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334455566666666666666665541 12346788889999999999999999999999999998776555
Q ss_pred HH
Q 012234 383 MA 384 (468)
Q Consensus 383 l~ 384 (468)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.017 Score=51.30 Aligned_cols=140 Identities=11% Similarity=0.007 Sum_probs=97.5
Q ss_pred cCCCcchHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc---cC--CHHHH---HHHHHHh
Q 012234 236 KGRSLIIWTAIISAYA--AHGD---ASKAVSLFNEMLNNGIQPD-PVTFTAVLSACAH---SG--LVDKA---WDIFNAM 301 (468)
Q Consensus 236 ~~~~~~~~~~l~~~~~--~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~---~~--~~~~a---~~~~~~~ 301 (468)
...++.+|...+.+.. ..++ ..+|..+|++..+. .|+ ...+..+..++.- .+ ..... ...++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3457788888887643 3333 57899999999985 565 4555555544432 11 11111 1122221
Q ss_pred hhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Q 012234 302 SGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENT 377 (468)
Q Consensus 302 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (468)
......+.++.+|..+...+...|++++|...++++. ..|+...|..+...+.-.|++++|.+.++++..++|..+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1111235577888888777777899999999999883 568888888888999999999999999999999999664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0083 Score=51.07 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=69.7
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHhhCCCC-cchHHHHHHHHHHc-CChHH
Q 012234 327 ISEATEFVSKM-PVKPS---AKVWGALLYGASI-----SGDVELGKFVCDHLFEIEPEN-TGNYIIMANLYSQA-GRWDE 395 (468)
Q Consensus 327 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 395 (468)
...|...+++. ...|+ ...|..+...|.. -|+.++|.+.|+++++++|+. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555556555 35665 5578888888887 499999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCCCCCc
Q 012234 396 ADRVREQMKESGLAKIPG 413 (468)
Q Consensus 396 A~~~~~~m~~~~~~~~~~ 413 (468)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999877664344
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.014 Score=41.78 Aligned_cols=66 Identities=14% Similarity=-0.017 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 341 PSAKVWGALLYGASISGDVELGKFVCDHLFEIE-------PENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.+..-+..+...+...|++..|...++++.+.. +..+.++..|+.+|.+.|++++|..++++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355667788999999999999999999998863 234567999999999999999999999999774
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.033 Score=38.73 Aligned_cols=76 Identities=9% Similarity=0.055 Sum_probs=54.8
Q ss_pred CCCHhHHHHHHHHHhccCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Q 012234 308 QPSVEHYACMVGVLSRARR---ISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYII 382 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (468)
++++..+..+..++...++ .++|..++++. ...| +......+...+...|++++|+..|+++++.+|+ ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 3466677777777654443 68888888877 2344 5777888888899999999999999999999887 333333
Q ss_pred HH
Q 012234 383 MA 384 (468)
Q Consensus 383 l~ 384 (468)
+.
T Consensus 82 i~ 83 (93)
T 3bee_A 82 II 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.74 Score=44.49 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHH
Q 012234 255 DASKAVSLFNEMLNNG-IQPDPV--TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEAT 331 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 331 (468)
+.+.|...+....... +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6677888877765432 222211 1222333333444244555555554432 233333334444455678888888
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 332 EFVSKMPVKP--SAKVWGALLYGASISGDVELGKFVCDHLFE 371 (468)
Q Consensus 332 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 371 (468)
..|..|...+ ...-..=+..++...|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888885332 232233344566677888888888877764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.017 Score=43.99 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhC-C-CCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 341 PSAKVWGALLYGASISG---DVELGKFVCDHLFEIE-P-ENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 341 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
++..+...+..++++.+ ++++++.+++...+.+ | .+...+..|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444455555555544 3345555555555544 3 2344445555555555555555555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.094 Score=41.05 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=48.9
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 012234 86 MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREM 165 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 165 (468)
.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+...++-+..
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344566666666665554 2344566666666666666666666655543 333333444455555544444443
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhhHHHHH
Q 012234 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197 (468)
Q Consensus 166 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 197 (468)
...| -++....++...|+++++.++|
T Consensus 87 ~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 87 QTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 3332 1233333344445555544443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.34 E-value=9.7e-05 Score=67.00 Aligned_cols=237 Identities=11% Similarity=0.181 Sum_probs=152.4
Q ss_pred CeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
.+..|..|..+....+++.+|++.|-+. .|+..|..+|.+..+.|++++-+.++...++..-.|... +.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHh
Confidence 4456777777777777777776665443 445566677777777777777777776655543233332 456667777
Q ss_pred cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC------------------------CCcch
Q 012234 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG------------------------RSLII 242 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~ 242 (468)
.+++.+..+++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 777666544432 35555555667777777777777766665442 36678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCC-CCCHhHHHHHHHHH
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGI-QPSVEHYACMVGVL 321 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~ 321 (468)
|..+-.+|...+.+.-|.-.--.++- .|+. ...++..|...|-+++.+.+++.-. |+ ....-.|+-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHH
Confidence 99999999999988877655444432 2221 2236667888888888888888766 33 34667788888777
Q ss_pred hccCChHHHHHHHHhC----CCC------CCHHHHHHHHHHHHHcCChHHHH
Q 012234 322 SRARRISEATEFVSKM----PVK------PSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~----~~~------~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
++- +.++.++.++-. .++ .....|.-++..|..-.+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 765 556666655543 111 13445777777777777777664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.027 Score=41.21 Aligned_cols=89 Identities=16% Similarity=0.037 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHHcCChHH
Q 012234 289 GLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE---ATEFVSKMP-VK-P--SAKVWGALLYGASISGDVEL 361 (468)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~ 361 (468)
.....+.+-|.+.... | .|+..+-..+.-++.+...... ++.++.++- .. | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344444444444332 2 2444444445555555554433 555555542 11 2 12333444455555666666
Q ss_pred HHHHHHHHHhhCCCCcch
Q 012234 362 GKFVCDHLFEIEPENTGN 379 (468)
Q Consensus 362 a~~~~~~~~~~~~~~~~~ 379 (468)
|.+.++.+++..|.|..+
T Consensus 93 A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 666666666666555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.36 Score=37.75 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=44.3
Q ss_pred HHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHH
Q 012234 118 YMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIH 197 (468)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 197 (468)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.++...+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 44567777777776655 3456677777777777777777777765532 333444445555555555444
Q ss_pred HHHHHc
Q 012234 198 GYAVKN 203 (468)
Q Consensus 198 ~~~~~~ 203 (468)
+.....
T Consensus 84 ~iA~~~ 89 (177)
T 3mkq_B 84 NIAQTR 89 (177)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 444433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.29 Score=36.51 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 340 KPSAKVWGALLYGASISGDV---ELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 340 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.|+..+-..+..++.++.+. .+++.+++...+..|. .......|+-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45555555566666655533 4566666666665553 3334555666666777777777766666553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.16 Score=37.19 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=10.5
Q ss_pred HHHHHhccCChHHHHHHHHhC
Q 012234 317 MVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 317 l~~~~~~~~~~~~A~~~~~~~ 337 (468)
|.-++.+.|++++|.+.++.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 344455555555555555444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.071 Score=52.48 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=50.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 350 LYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
...|...|+++.|..+.++++..-|.+..+|..|+.+|.+.|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556789999999999999999999999999999999999999999999988874
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.32 Score=41.50 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhhHHHHHHHHHHcCCC
Q 012234 141 TWNAVISGLVQN-----NRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH-FSNLKGGKEIHGYAVKNRYD 206 (468)
Q Consensus 141 ~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~ 206 (468)
.|..+...|.+. |+.++|.+.|++.++.+..-+..++......++. .|+.+.+.+.++++......
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 556666666653 6666666666666554211124445555555555 36666666666666665444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.87 Score=33.59 Aligned_cols=148 Identities=13% Similarity=0.056 Sum_probs=92.7
Q ss_pred hHHHHHHH--hhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CeehHHHHHHHHHh
Q 012234 44 TVVSVLQA--CGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYMV 120 (468)
Q Consensus 44 ~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 120 (468)
+...|+.+ ..-.|..++..++..+..... +..-+|-+|--....-+-+-..++++.+-+- |. ..
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~ 73 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DK 73 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GG
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------Hh
Confidence 33444444 344577777777777776653 4444555554444555555555555544321 11 23
Q ss_pred cCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHH
Q 012234 121 HGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYA 200 (468)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 200 (468)
.|+.......+-.+. .+....+.-+.....+|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444444444443 34455566677888888888888888886443 4777778888888888888888888888888
Q ss_pred HHcCCC
Q 012234 201 VKNRYD 206 (468)
Q Consensus 201 ~~~~~~ 206 (468)
-+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 887753
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.27 Score=37.06 Aligned_cols=52 Identities=10% Similarity=-0.025 Sum_probs=35.4
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
+|.++|.++|+.++.....-..+|...+..-.+.|+...|.+++.+.+..+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 6777777777777666444455566666666777777777777777776543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.34 Score=35.61 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 340 KPSAKVWGALLYGASISGDV---ELGKFVCDHLFEIEPE-NTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 340 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.|+..+--.+..++.+..+. .+++.+++...+.+|. ....+..|+-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555556666655433 4566666666666553 344556666677777777777777766654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.61 Score=35.15 Aligned_cols=60 Identities=15% Similarity=0.027 Sum_probs=42.8
Q ss_pred cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Q 012234 324 ARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIM 383 (468)
Q Consensus 324 ~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 383 (468)
.++.++|.++|+.+. .+-=...|......-.++|++..|.+++.++..+.|.+...+...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 356666777666652 111267777777888889999999999999999888765554443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.87 Score=35.02 Aligned_cols=69 Identities=7% Similarity=0.054 Sum_probs=38.6
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCc-------chHHHHHHHhhccCChHHHHHHHHHHHH
Q 012234 2 SKRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDG-------VTVVSVLQACGQSSDIVFGMEVHNFVIE 70 (468)
Q Consensus 2 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 70 (468)
|+-+.-++-.=+..+...|.++.|+-+...+....+..|+. .++..+..++...|++..|...|++.++
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44444455555666777777777777766644222122332 1345556666777777777777777644
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.14 E-value=3.9 Score=35.43 Aligned_cols=182 Identities=14% Similarity=0.149 Sum_probs=101.4
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHH----
Q 012234 86 MYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDL---- 161 (468)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~---- 161 (468)
.....|++=+|.+.++ ++..-|.+.+++++|++++..- ...+.+.|+...|-++
T Consensus 22 ~~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHH
Confidence 3444566666666543 5556667777777777766432 3345556666555443
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCh-----hhHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 012234 162 VREMQASGVRPNAVTISSIFSLFSHFSNL-----KGGKEIHGYAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRVFDR 234 (468)
Q Consensus 162 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 234 (468)
++-..+.+++++......++..+.....- .-......+..+.| ...++.....+...|.+.|++.+|+..|--
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 44445567777777777777666553321 11222333333333 234677888899999999999999887652
Q ss_pred ccCCCcchHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhh
Q 012234 235 FKGRSLIIWTAIISAYAAH---GDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQ 304 (468)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (468)
-...++..+..++--+... |...++-- ..-..++ -|.-.++...|..+|+...+.
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 2222344444444333332 32222211 1111222 345568888888888876543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.75 E-value=9.3 Score=38.70 Aligned_cols=123 Identities=14% Similarity=0.103 Sum_probs=49.5
Q ss_pred hcCChHHHHHHHhhccC-CCcc-hHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 012234 221 KTGFLHGAQRVFDRFKG-RSLI-IWT---AIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAW 295 (468)
Q Consensus 221 ~~g~~~~a~~~~~~~~~-~~~~-~~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 295 (468)
..|+.+.+..+.+.+.. .++. -|. .+.-+|+..|+......++..+.... ..+......+.-++...|+.+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 44555555555444432 2221 121 22334555566555555655555431 112222222222333334444444
Q ss_pred HHHHHhhhhcCCCCCHhHHHHHHHHHhccCCh-HHHHHHHHhCCCCCCHHHH
Q 012234 296 DIFNAMSGQYGIQPSVEHYACMVGVLSRARRI-SEATEFVSKMPVKPSAKVW 346 (468)
Q Consensus 296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 346 (468)
++++.+... ..|....-..+.-+....|.. .+++..+..+...+|..+-
T Consensus 615 rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 615 RIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp HHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 455444331 123332222232333333332 4555566655444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.43 Score=43.34 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCCce
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE-----SGLAKIPGR 414 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 414 (468)
+...++..+...|+..++...+..+...+|-+...+..++.+|.+.|+..+|.+.|+.+.+ .|+.|.+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455677788899999999999999999999999999999999999999999999988755 488776653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.33 E-value=3.2 Score=43.77 Aligned_cols=81 Identities=7% Similarity=-0.008 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcc----CCCc----chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFK----GRSL----IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVL 282 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 282 (468)
-|..++..+.+.|.++.+.++-.... ..+. ..|..+.+++...|++++|...+-.+.....+ ...+..|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 45667777777787777766654332 1221 25788888999999999999988877665433 45666777
Q ss_pred HHHhccCCHHH
Q 012234 283 SACAHSGLVDK 293 (468)
Q Consensus 283 ~~~~~~~~~~~ 293 (468)
..++..|..+.
T Consensus 979 ~~lce~~~~~~ 989 (1139)
T 4fhn_B 979 NQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHCCHHH
T ss_pred HHHHhCCChhh
Confidence 77776666443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.03 E-value=2 Score=29.45 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHH
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (468)
+++.+++...++ +++..+.+ +..+.+.|++++|..+.+...-||...|-+|.. .+.|--+++..
T Consensus 26 ~tIAdwL~~~~~-~E~v~lIR-------------~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 26 LCIAEWLERLGQ-DEAARLIR-------------ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp HHHHHHHHHTTC-HHHHHHHH-------------HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHH-------------HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHH
Confidence 445555555555 55555443 235667788888888888777788888876644 56788888888
Q ss_pred HHHHHHHCCCCCCHHHH
Q 012234 161 LVREMQASGVRPNAVTI 177 (468)
Q Consensus 161 ~~~~m~~~~~~p~~~~~ 177 (468)
.+..+..+| .|....|
T Consensus 90 rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTCS-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 887777666 4544444
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=91.82 E-value=2.2 Score=29.35 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHH
Q 012234 81 NALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLD 160 (468)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (468)
+++.+++...++ +++..+.+ +..+.+.|++++|..+.+...-||...|-+|.. .+.|--+++..
T Consensus 27 ~tIAdwL~~~~~-~E~v~lIR-------------~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 27 NCIAEWLHLKGE-EEAVQLIR-------------LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp HHHHHHHHHTTC-HHHHHHHH-------------HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHH-------------HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHH
Confidence 445555555555 55554433 234567777777777777777777777766644 45677777777
Q ss_pred HHHHHHHCCCCCCHHHH
Q 012234 161 LVREMQASGVRPNAVTI 177 (468)
Q Consensus 161 ~~~~m~~~~~~p~~~~~ 177 (468)
.+..+..+| .|....|
T Consensus 91 rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCC-CHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 776666655 4444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.71 E-value=8.1 Score=35.66 Aligned_cols=90 Identities=10% Similarity=0.190 Sum_probs=49.8
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC---C-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCCCc----ch
Q 012234 315 ACMVGVLSRARRISEATEFVSKMP---V-KPS----AKVWGALLYGASISGDVELGKFVCDHLFEI---EPENT----GN 379 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~---~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~ 379 (468)
..|...|...|++.+|.+++.++. . ..+ ...+...+..|...+++..|..++.++... .++++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 445566666666666666666552 0 111 234444556666667777776666665431 22222 24
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 012234 380 YIIMANLYSQAGRWDEADRVREQMK 404 (468)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~m~ 404 (468)
+...+..+...++|.+|.+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5556666666666666666555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.49 Score=46.66 Aligned_cols=120 Identities=9% Similarity=-0.010 Sum_probs=70.3
Q ss_pred HHHHhcCCC-hhHHHHHHHHhhhCCCCCCCcchH--HHHHHHhhccCCh-HHHHHHHHHHHHh------C-CCCc-----
Q 012234 13 IAGYSQGGF-YEECKALFREMLNSPVLRPDGVTV--VSVLQACGQSSDI-VFGMEVHNFVIES------H-IKMD----- 76 (468)
Q Consensus 13 i~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~--~~l~~~~~~~~~~-~~a~~~~~~~~~~------~-~~~~----- 76 (468)
+..+...|+ ++.|+.+|+++. ... |....+ ..++..+...++- -+|.+++.+.++. . ...+
T Consensus 255 l~~~~~t~~~~~~a~~~le~L~-~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 255 KSFIAITPSLVDFTIDYLKGLT-KKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHH-HHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHH-hhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 333344555 477888888887 322 433332 2333333333322 2455555554431 1 1111
Q ss_pred -----hHHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCHHHHHHHHhhCC
Q 012234 77 -----LWICNALIGMYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFVEKAMDLFQVMK 135 (468)
Q Consensus 77 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 135 (468)
....+.-...+...|+++-|+.+-++... | +-.+|..|..+|...|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11233334556678888888888887654 4 45688888888888888888888888886
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.91 E-value=1.6 Score=33.59 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=16.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCC
Q 012234 313 HYACMVGVLSRARRISEATEFVSKMP 338 (468)
Q Consensus 313 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 338 (468)
.-..+..+|.+.+++++|+.+++.++
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33345566666666666666666664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.31 E-value=17 Score=36.89 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcC
Q 012234 80 CNALIGMYAKCGSLDYARALLDEMS 104 (468)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~ 104 (468)
|..++.++.+.++.+.+.++|.++.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556677777888888888888864
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.27 E-value=1.8 Score=29.96 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 445666777777777888999999999999999999999999998887653 3334567666643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.08 E-value=14 Score=38.95 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=23.5
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhC
Q 012234 83 LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVM 134 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 134 (468)
++..+...+..+.+.++..... .++..--.+..++...|++++|...|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444455554444433332 22222233444555555555555555554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.86 E-value=2.7 Score=29.09 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=39.5
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 336 KMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
.+..-|++.+..+.+.+|.+.+++..|.++++-+.....+...+|-.++.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33567899999999999999999999999999888776555556666553
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.12 E-value=1.2 Score=32.84 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=45.7
Q ss_pred CCHhHHHHHHHHHhccCC---hHHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 309 PSVEHYACMVGVLSRARR---ISEATEFVSKM-PVKP--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 309 p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
|+..+--.+.-++.+... ..+++.++.++ ...| ....+..|.-++.+.|++++|.+..+.+++..|.|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 444444444555555443 33455555554 1223 245666677788888999999999999998888876543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.12 E-value=4.5 Score=30.18 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=48.8
Q ss_pred CCCHhHHHHHHHHHhccCC---hHHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 308 QPSVEHYACMVGVLSRARR---ISEATEFVSKM-PVKP--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 308 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
.|+..+--.+.-++.+... ..+++.+++++ ...| .......|.-++.+.|++++|.+..+.+++..|.|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4555555555555555554 33455555555 1223 344566677889999999999999999999999886543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.03 E-value=3.3 Score=37.46 Aligned_cols=71 Identities=21% Similarity=0.190 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----hcCCCCCHhHHH
Q 012234 244 TAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG----QYGIQPSVEHYA 315 (468)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~~ 315 (468)
..++.++...|++.+|...+..+... -+.+...+..+|.++...|+..+|++.|+.+.+ ..|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 44566777888888888888887665 245777888888888888888888888877643 358888776543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.24 E-value=14 Score=32.20 Aligned_cols=181 Identities=13% Similarity=0.095 Sum_probs=97.3
Q ss_pred HHHhCCCH---HHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHH
Q 012234 86 MYAKCGSL---DYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLV 162 (468)
Q Consensus 86 ~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (468)
.....|++ =+|.+.++ ++..-|.+.+++++|++++..- ...+.+.|+...|-++.
T Consensus 21 ~~I~~G~y~~~YEAHQ~~R-----------Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQETR-----------LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp HHHHHCCHHHHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCccccHHHHHHH-----------HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHH
Confidence 34445666 55655543 4455566677777777665432 23445556655444433
Q ss_pred ----HHHHHCCCCCCHHHHHHHHHHHHccCChh-hHHHHHH----HHHHcC--CCCchhHHHHHHHHHHhcCChHHHHHH
Q 012234 163 ----REMQASGVRPNAVTISSIFSLFSHFSNLK-GGKEIHG----YAVKNR--YDRNIYVATAIIDTYAKTGFLHGAQRV 231 (468)
Q Consensus 163 ----~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~----~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 231 (468)
+-+.+.++++|..+...++..+.....-+ .-..+.+ +-.+.| ..-++.....+...|.+.+++.+|+..
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 33344566777766666666665544321 1122222 333333 345677888889999999999999988
Q ss_pred HhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 012234 232 FDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
|---.++++..+..++--+...+...++ +...-..++ -|.-.++...|..+++...+
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 7422222224554444433333321111 222222233 34556788888877666553
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.43 E-value=18 Score=32.55 Aligned_cols=289 Identities=11% Similarity=0.022 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC--------CCeehHHHHHHHHHhcC-CHHHHHHHHhhCCC---CCHhHH----
Q 012234 79 ICNALIGMYAKCGSLDYARALLDEMSD--------KDEVSYSAIISGYMVHG-FVEKAMDLFQVMKR---PGLSTW---- 142 (468)
Q Consensus 79 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~---~~~~~~---- 142 (468)
....|...|.+.|+.++..+++..... +.......++..+.... ..+.-.++..+..+ ..-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888777654 12334555666655432 23333333333321 111122
Q ss_pred --HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCChhhHHHHHHHHHHc--CCCCchhHHH
Q 012234 143 --NAVISGLVQNNRHEAVLDLVREMQASGVRPNA-----VTISSIFSLFSHFSNLKGGKEIHGYAVKN--RYDRNIYVAT 213 (468)
Q Consensus 143 --~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 213 (468)
.-++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...++..++...+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 25677888888888888888887663111121 22334455666777777777777665542 1222222221
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHH-HcCChHHHHHHHHHHHH----CCCCC---CHHHHHHHHHHH
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYA-AHGDASKAVSLFNEMLN----NGIQP---DPVTFTAVLSAC 285 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~----~~~~p---~~~~~~~l~~~~ 285 (468)
.+..+ -...+. ..++|..|...|-+... .| .| +...|..+....
T Consensus 181 -~i~~~--------------------------~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~aLl 232 (394)
T 3txn_A 181 -ALDLQ--------------------------SGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCKIM 232 (394)
T ss_dssp -HHHHH--------------------------HHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred -HHHHH--------------------------hhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHH
Confidence 11111 111233 34555555544444321 11 11 122343332222
Q ss_pred hccCCHHHHHHHHH-HhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH
Q 012234 286 AHSGLVDKAWDIFN-AMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELG 362 (468)
Q Consensus 286 ~~~~~~~~a~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 362 (468)
. .. ..+...++. .....+ ..|....+..++.+| ..+++.+...++.... ...|+.....+-..+.+ -..
T Consensus 233 ~-~~-r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~--Ir~-- 304 (394)
T 3txn_A 233 L-GQ-SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT--MLE-- 304 (394)
T ss_dssp T-TC-GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH--HHH--
T ss_pred c-CC-HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHH--
Confidence 2 22 112222221 111111 245555566666654 4467777777777653 34455432211111100 011
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 363 KFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
..+.++ ..|-....+..++..+.- ..+++...+-+|+..|.
T Consensus 305 -~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 305 -QNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -HHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred -HHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 112222 246666778888877643 67899999999998876
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.00 E-value=4 Score=29.95 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGV 320 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (468)
+.-+..+-++.+....+.|++......+++|.+.+|+..|.++|+.++.+. .+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 344566667777777889999999999999999999999999999887643 4445567766643
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.68 E-value=6.8 Score=26.94 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=56.4
Q ss_pred ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012234 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268 (468)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 268 (468)
..++|..|-+.+...+. ...+-..-+..+.+.|+|++|..+.+...-||...|.++.. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666665542 22222222345678899999999988888888888877654 467888888888877777
Q ss_pred CCCCCCHHHHH
Q 012234 269 NGIQPDPVTFT 279 (468)
Q Consensus 269 ~~~~p~~~~~~ 279 (468)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=85.59 E-value=13 Score=29.88 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=6.4
Q ss_pred chHHHHHHHHHHHhCCC
Q 012234 76 DLWICNALIGMYAKCGS 92 (468)
Q Consensus 76 ~~~~~~~l~~~~~~~g~ 92 (468)
+..+-...+..+.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333333333333333
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.18 E-value=16 Score=30.71 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=63.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHh----HHHHHHHHHhcc
Q 012234 249 AYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVE----HYACMVGVLSRA 324 (468)
Q Consensus 249 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 324 (468)
...+.|+.++|++....-++.. +-|...-..+++.+|-.|+++.|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 3455677777777776666652 345555666777777777777777777766643 44422 33333322
Q ss_pred CChHHHH-HHHHhCC----CCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHhhCCCCcc
Q 012234 325 RRISEAT-EFVSKMP----VKPSAKVWGALLYGA--SISGDVELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 325 ~~~~~A~-~~~~~~~----~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (468)
+... ++|..-. ......-...++.+. ...|+.+.|.++-.++.+.-|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 1222111 111122223333333 3457777777777777777665444
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.08 E-value=7.4 Score=26.82 Aligned_cols=86 Identities=16% Similarity=0.107 Sum_probs=55.1
Q ss_pred ChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012234 189 NLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLN 268 (468)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 268 (468)
..++|..|-+.+...+. ...+-..-+..+.+.|+|++|..+.+...-||...|.++.. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666665442 22222222345677889999999988888888888877654 466777777777777766
Q ss_pred CCCCCCHHHHH
Q 012234 269 NGIQPDPVTFT 279 (468)
Q Consensus 269 ~~~~p~~~~~~ 279 (468)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=84.96 E-value=13 Score=29.50 Aligned_cols=18 Identities=11% Similarity=-0.152 Sum_probs=6.9
Q ss_pred CCCHhHHHHHHHHHHhCC
Q 012234 136 RPGLSTWNAVISGLVQNN 153 (468)
Q Consensus 136 ~~~~~~~~~l~~~~~~~g 153 (468)
.++...-...+.++.+.+
T Consensus 87 d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp CSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 344333333333333333
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.98 E-value=14 Score=29.38 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=41.8
Q ss_pred cCChHHHHHHHHHHHhhC--CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012234 356 SGDVELGKFVCDHLFEIE--PENTGNYIIMANLYSQAGRWDEADRVREQMKESGLAK 410 (468)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 410 (468)
.++..+...+|..+...+ ...+..|...+..+...|++.+|.++|+.-++.+-+|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444668888888877664 5566778888888888899999999888877776554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.83 E-value=7.7 Score=28.52 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=41.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Q 012234 334 VSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMAN 385 (468)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 385 (468)
+-.+..-|++.+..+.+.+|.+.+|+..|.++++-...+..+...+|-.++.
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3344578999999999999999999999999999988876555666766553
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.29 E-value=3.1 Score=34.92 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=37.9
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 320 VLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 320 ~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
...+.|.+++|++.+..- +..| |...=..|+..+|-.|++++|..-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455677777777665443 3344 55566666777777777777777777777777653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.60 E-value=24 Score=30.82 Aligned_cols=166 Identities=12% Similarity=0.115 Sum_probs=98.8
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhccC
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLF----NEMLNNGIQPDPVTFTAVLSACAHSG 289 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~~~~~l~~~~~~~~ 289 (468)
++..-|.+.+++++|++++.. -...+.+.|+...|.++. +-..+.++++|......++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 445557777888888777542 233455666666555544 44556678888887777777766544
Q ss_pred CHH-HHHHHHHHhhh---hcCC--CCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 012234 290 LVD-KAWDIFNAMSG---QYGI--QPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 290 ~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
.-+ .=..+++++.+ ++|- .-|+.....+...|.+.+++.+|...|- ....+.+..+..++..+...+...++-
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e~d 187 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHTAP 187 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGGHH
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCccHH
Confidence 311 11223333321 1232 2367777788899999999999998884 233344466666665555444322222
Q ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 364 FVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
.++ ...+--|...++...|..+++...+
T Consensus 188 lfi--------------aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 188 LYC--------------ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHH--------------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH--------------HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 211 2233447778899999888777654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=82.33 E-value=17 Score=29.00 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=34.2
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHH
Q 012234 40 PDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYM 119 (468)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 119 (468)
++...-...+..+.+.++.+ +...+..+.. .++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45555445555555555432 2222222222 2344444455555555554333333333333344444444444444
Q ss_pred hcCC
Q 012234 120 VHGF 123 (468)
Q Consensus 120 ~~~~ 123 (468)
+.++
T Consensus 107 ~~~~ 110 (211)
T 3ltm_A 107 QIGD 110 (211)
T ss_dssp HHCC
T ss_pred HhCc
Confidence 4444
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=82.17 E-value=17 Score=28.77 Aligned_cols=73 Identities=10% Similarity=-0.015 Sum_probs=28.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 012234 114 IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNL 190 (468)
Q Consensus 114 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 190 (468)
.+..+.+.+..+....+.+.+..++...-...+.++...|..+ +...+..+.. .++...-...+.++.+.++.
T Consensus 34 A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 34 AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcH
Confidence 3333333343333333333333444444334444444444332 2222223322 23444444444444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 468 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.35 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.2 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.15 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.14 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.96 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.8 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.73 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.73 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.72 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.7 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.67 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.64 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.61 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.59 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.49 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.47 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.38 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.35 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.32 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.25 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.25 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.24 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.19 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.16 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.06 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.05 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.94 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.84 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.83 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.8 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.68 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.5 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.5 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.49 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.39 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.21 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.94 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.64 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.4 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.81 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.26 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.5 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.79 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.93 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.68 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.57 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=6.8e-24 Score=194.83 Aligned_cols=373 Identities=13% Similarity=0.075 Sum_probs=304.8
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Q 012234 12 MIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCG 91 (468)
Q Consensus 12 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 91 (468)
+...+.+.|++++|++.|+++.+. . |-+...+..+..++.+.|++++|...++++++..+. +..++..+..+|.+.|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~-~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ-E-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhc
Confidence 455677889999999999999843 2 345778888899999999999999999999998744 6788999999999999
Q ss_pred CHHHHHHHHhhcCCC---CeehHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 012234 92 SLDYARALLDEMSDK---DEVSYSAIISGYMVHGFVEKAMDLFQVMK---RPGLSTWNAVISGLVQNNRHEAVLDLVREM 165 (468)
Q Consensus 92 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 165 (468)
++++|...+....+. +...+..........+....+........ .................+....+...+...
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence 999999999887652 33344444444444555444444443322 244455666677778888899999888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcch
Q 012234 166 QASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLII 242 (468)
Q Consensus 166 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~ 242 (468)
.... +.+...+..+...+...|+++.|...+....+.. +.+...+..+...+...|++++|...+++... .+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH
Confidence 7653 4456677788889999999999999999998865 44567788899999999999999999988664 44567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHh
Q 012234 243 WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLS 322 (468)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (468)
+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++..... .+.+...+..+...+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHH
Confidence 8888899999999999999999998863 335678888999999999999999999998864 3557788889999999
Q ss_pred ccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC
Q 012234 323 RARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR 392 (468)
Q Consensus 323 ~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (468)
+.|++++|++.|++. ...| +..++..+..++...|++++|+..|+++++++|+++.++..|+.+|.+.||
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999986 4555 578899999999999999999999999999999999999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.2e-22 Score=184.59 Aligned_cols=353 Identities=14% Similarity=0.097 Sum_probs=293.2
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCCH
Q 012234 48 VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD--K-DEVSYSAIISGYMVHGFV 124 (468)
Q Consensus 48 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~ 124 (468)
+...+.+.|++++|.+.++++++..+. +...+..+..+|.+.|++++|...|++..+ | +..+|..+...+.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 445567889999999999999988643 778899999999999999999999998764 3 567899999999999999
Q ss_pred HHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHH
Q 012234 125 EKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAV 201 (468)
Q Consensus 125 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (468)
++|+..+....+ .+...+..........+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 999999988764 344455555556666667777666666655543 3444455556666777888888888888777
Q ss_pred HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012234 202 KNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278 (468)
Q Consensus 202 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 278 (468)
... +.+...+..+...+...|++++|...+++..+ .+..++..+...+...|++++|...+++....+ +.+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 765 44566777888999999999999999987654 345688889999999999999999999988764 4467778
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASIS 356 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 356 (468)
..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|++.++... .+.+...+..+...+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 88899999999999999999998853 23357788999999999999999999998873 456788999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++.++.
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=4.7e-15 Score=131.84 Aligned_cols=241 Identities=8% Similarity=-0.036 Sum_probs=172.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 012234 144 AVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG 223 (468)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 223 (468)
.....+.+.|++++|+..|+++++.. +-+..++..+..++...|+++.|...+..+.+.. +.+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45667788889999999998888763 3356677788888888888888888888887765 334566666777777777
Q ss_pred ChHHHHHHHhhccCCCcch---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 012234 224 FLHGAQRVFDRFKGRSLII---WTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNA 300 (468)
Q Consensus 224 ~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (468)
++++|.+.++.....++.. +....... ...+.......+..+...+.+.++...+.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 7777777776654322110 00000000 000000111112223344567778888887
Q ss_pred hhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Q 012234 301 MSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VK-PSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG 378 (468)
Q Consensus 301 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (468)
..+.....++...+..+...+...|++++|+..+++.. .. .+..+|..+...+...|++++|++.++++++.+|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 77543334456778888889999999999999998872 33 45788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 379 NYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
++..++.+|.+.|++++|++.|++.++.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998874
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.1e-14 Score=127.50 Aligned_cols=269 Identities=14% Similarity=0.076 Sum_probs=197.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 110 SYSAIISGYMVHGFVEKAMDLFQVMKR--P-GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 110 ~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
.+-.....+.+.|++++|+..|+++.+ | +..+|..+..++...|++++|+..+.+..+.. +-+...+..+..++..
T Consensus 21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 344567778999999999999999865 4 46689999999999999999999999998763 3456778888899999
Q ss_pred cCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 187 FSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEM 266 (468)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 266 (468)
.|++++|...+..+........ ........... ..+.......+..+...+.+.+|...+.+.
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYA-HLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchH-HHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999887542211 10000000000 001111111222344556678888888887
Q ss_pred HHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CH
Q 012234 267 LNNG-IQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SA 343 (468)
Q Consensus 267 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~ 343 (468)
.... -.++...+..+...+...|++++|...|++.... .+.+...|..+...|.+.|++++|++.|++. ...| +.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 6642 2345677888888999999999999999998864 1335778889999999999999999999887 3344 57
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch-----------HHHHHHHHHHcCChHHHHH
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTGN-----------YIIMANLYSQAGRWDEADR 398 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~ 398 (468)
.+|..+..+|...|++++|+..|++++++.|.+... +..+..++...|+.+.+..
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999999999999999999999999987776543 4556677777777765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=3e-10 Score=101.37 Aligned_cols=262 Identities=13% Similarity=0.087 Sum_probs=176.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC-----CchhHHHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQASGVRPN----AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-----RNIYVATAI 215 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l 215 (468)
....+...|++++|+.++++.++.....+ ...+..+..++...|++++|...++.+.+.... .....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34556677777777777777766421111 124555666777777777777777776653211 112334456
Q ss_pred HHHHHhcCChHHHHHHHhhccC-------CCc----chHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHH
Q 012234 216 IDTYAKTGFLHGAQRVFDRFKG-------RSL----IIWTAIISAYAAHGDASKAVSLFNEMLNNG----IQPDPVTFTA 280 (468)
Q Consensus 216 ~~~~~~~g~~~~a~~~~~~~~~-------~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~ 280 (468)
...+...|++..+...+..... +.. ..+..+...+...|+++.+...+....... .......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6677777888877777765432 111 245556677888999999999888876532 2223455666
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCC-----CHhHHHHHHHHHhccCChHHHHHHHHhCC-CC-----CCHHHHHHH
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQP-----SVEHYACMVGVLSRARRISEATEFVSKMP-VK-----PSAKVWGAL 349 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-----~~~~~~~~l 349 (468)
....+...++...+...+........... ....+..+...+...|++++|...+.+.. .. .....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 66777788888888888776654321111 12345556677888999999999998873 11 124566778
Q ss_pred HHHHHHcCChHHHHHHHHHHHhh------CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 350 LYGASISGDVELGKFVCDHLFEI------EPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 350 ~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
..++...|++++|...++++... .|....++..++.+|.+.|++++|.+.+++..+.
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999999999988754 2445667889999999999999999999887653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.5e-09 Score=92.23 Aligned_cols=221 Identities=11% Similarity=-0.051 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 012234 155 HEAVLDLVREMQASGV-RP--NAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231 (468)
Q Consensus 155 ~~~a~~~~~~m~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 231 (468)
.+.++.-+++...... .+ ...++..+..+|.+.|++++|...|+..++.. +.++.++..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555544311 11 11244455666666777777777777766654 34556666777777777777777777
Q ss_pred HhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCC
Q 012234 232 FDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQ 308 (468)
Q Consensus 232 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 308 (468)
|+++.+ .+..++..+..++...|++++|...|++..+.. +.+......+..++.+.+..+.+..+....... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence 776654 234567777788888888888888888887653 223444333444445555555555544444422 2
Q ss_pred CCHhHHHHHHHHHhccCChHHHH-HHHHhCC----CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 012234 309 PSVEHYACMVGVLSRARRISEAT-EFVSKMP----VKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
+....+. ++..+.......... ....... ..|+ ..+|..+...+...|++++|...|++++..+|++...|.
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222 222222222211111 1111111 1222 346777888899999999999999999999988765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4.3e-09 Score=91.89 Aligned_cols=208 Identities=9% Similarity=0.081 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS-NLKGGKEIHGYAVKNRYDRNIYVATAIIDTY 219 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (468)
.|+.+...+.+.+++++|+..++++++.. +-+...|+....++...| ++++|...++.+.+.. +-+..++..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 56666666777777777877777777752 333445566666666655 4677777777776665 34456666666667
Q ss_pred HhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------C
Q 012234 220 AKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSG------L 290 (468)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------~ 290 (468)
.+.|++++|+..++++.+ .+..+|..+...+...|++++|+..++++++.. +-+...|+.+...+.+.+ .
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhh
Confidence 777777777777766654 344566777777777777777777777776642 224445554444433333 2
Q ss_pred HHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 012234 291 VDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM----PVKPSAKVWGALLYGAS 354 (468)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~ 354 (468)
+++|...+.++.+. .+.+...|..+...+...| .+++.+.++.. +...+...+..++..|.
T Consensus 202 ~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 202 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 55666666666543 1224555555544443332 34444443332 12223444455554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=4.9e-09 Score=91.38 Aligned_cols=184 Identities=13% Similarity=0.118 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCC---Cc-chHHHHHHHHHHcCChHHHHHHHHH
Q 012234 190 LKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGR---SL-IIWTAIISAYAAHGDASKAVSLFNE 265 (468)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (468)
.+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+. +. .+|...+....+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3555666666665443444455555666666666666666666665432 11 2455666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC----CCC
Q 012234 266 MLNNGIQPDPVTFTAVLS-ACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM----PVK 340 (468)
Q Consensus 266 m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~ 340 (468)
+.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+|++. +..
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 6554322 2222222222 123345666666666666643 2334455666666666666666666666654 112
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 012234 341 P--SAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN 376 (468)
Q Consensus 341 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (468)
| ....|...+..-...|+.+.+..+++++.+..|..
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 2 13455555555556666666666666666655543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=5.8e-09 Score=92.74 Aligned_cols=162 Identities=10% Similarity=-0.043 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC--C----chh
Q 012234 141 TWNAVISGLVQNNRHEAVLDLVREMQASG----VRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD--R----NIY 210 (468)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~ 210 (468)
.+..+...+...|+++.+...+....... .......+......+...++...+...+......... . ...
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 34455566677777777777776665431 1122234444455556666666666665554442111 1 112
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCC-------cchHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHH
Q 012234 211 VATAIIDTYAKTGFLHGAQRVFDRFKGRS-------LIIWTAIISAYAAHGDASKAVSLFNEMLN----NGIQPD-PVTF 278 (468)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~ 278 (468)
.+..+...+...|+++.|...++...... ...+..+..++...|++++|...+++... .+..|+ ...+
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 23344455566666666666666554321 12344455566666666666666665542 223332 2344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhh
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMS 302 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~ 302 (468)
..+..++...|++++|...+++..
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555556666666666666665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.3e-09 Score=93.59 Aligned_cols=210 Identities=10% Similarity=0.097 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhhccC---CCcchHHHHHHHH
Q 012234 175 VTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTG-FLHGAQRVFDRFKG---RSLIIWTAIISAY 250 (468)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 250 (468)
..|+.+...+.+.+..++|...+..+++.+ +-+..+|+....++...| ++++|+..+++..+ .+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 356667777888999999999999999986 556667888888888876 58999999998764 4567899999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCC---
Q 012234 251 AAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARR--- 326 (468)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~--- 326 (468)
...|++++|+..++++.+.. +-+...|..+...+...|++++|+..++++.+. .| +...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccch
Confidence 99999999999999999863 346888999999999999999999999999864 44 56777777666665554
Q ss_pred ---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--cchHHHHHHHHHHc
Q 012234 327 ---ISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN--TGNYIIMANLYSQA 390 (468)
Q Consensus 327 ---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 390 (468)
+++|++.+.+. ...| +...|+.+...+. ....+++.+.+..+.+..|.. +..+..++.+|...
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 67888888776 3344 6777877766654 445688889999998887764 44556677777543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=1e-10 Score=103.70 Aligned_cols=231 Identities=8% Similarity=-0.095 Sum_probs=162.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--ChhhHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCChH
Q 012234 150 VQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFS--NLKGGKEIHGYAVKNRYDRNIYV-ATAIIDTYAKTGFLH 226 (468)
Q Consensus 150 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~ 226 (468)
...|++++|+.+++...+.. +.+...+..+..++...+ +++.+...+..+.+...+ +... +......+...+.++
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccH
Confidence 34455778888888877653 334455555655665554 467888888888876533 3333 344556777788999
Q ss_pred HHHHHHhhccCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 012234 227 GAQRVFDRFKGR---SLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG 303 (468)
Q Consensus 227 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (468)
+|+..++.+.+. +..+|+.+..++...|++++|...+...... .|+. ......+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999888764 3467888888889999888876665544332 1221 1122334445566667777777664
Q ss_pred hcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 012234 304 QYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 304 ~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
. .+++...+..+...+...|+.++|...+.+.. ..| +..++..+...+...|++++|+..++++.+++|.+...|.
T Consensus 237 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 G--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp S--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred h--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 3 24445556667777888899999999888773 444 4567888889999999999999999999999999888888
Q ss_pred HHHHHHHH
Q 012234 382 IMANLYSQ 389 (468)
Q Consensus 382 ~l~~~~~~ 389 (468)
.|...+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 88777764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=8.7e-09 Score=89.77 Aligned_cols=182 Identities=10% Similarity=0.055 Sum_probs=144.0
Q ss_pred CChHHHHHHHhhccC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 012234 223 GFLHGAQRVFDRFKG----RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIF 298 (468)
Q Consensus 223 g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (468)
+..++|..+|++..+ .+...|...+......|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345778888887654 3445788888889999999999999999987643333557888999999999999999999
Q ss_pred HHhhhhcCCCCCHhHHHHHHHH-HhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 012234 299 NAMSGQYGIQPSVEHYACMVGV-LSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPE 375 (468)
Q Consensus 299 ~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (468)
+++.+. .+.+...|...... +...|+.+.|..+|+.+. .+.+...|...+..+...|+++.|..+|+++....|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999864 23344455444433 345689999999999883 3456889999999999999999999999999998765
Q ss_pred Ccc----hHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 376 NTG----NYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 376 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
++. .|...+..-...|+.+.+..+++++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 543 6777888878899999999999988664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=5.6e-10 Score=94.86 Aligned_cols=214 Identities=10% Similarity=-0.061 Sum_probs=144.8
Q ss_pred hhhHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHH
Q 012234 190 LKGGKEIHGYAVKNRYDR---NIYVATAIIDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLF 263 (468)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 263 (468)
.+.+..-+.++....... ...++..+..+|.+.|++++|+..|++..+ .++.+|+.+..++...|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 344555555555532211 234666788999999999999999998764 46678999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC
Q 012234 264 NEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS 342 (468)
Q Consensus 264 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~ 342 (468)
+++.+.. +-+..++..+..++...|++++|...|++..+.. +.+......+...+.+.+..+.+..+..... ..+.
T Consensus 95 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 95 DSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 9999863 2246678888899999999999999999998641 2344444444445555555554444433331 1222
Q ss_pred HHHHHHHHHHHH----HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 343 AKVWGALLYGAS----ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 343 ~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
...+.. +..+. ..+..+.+...+.......|....++..++.+|...|++++|...|++.+...
T Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 172 QWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp STHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 222221 22211 12223444444444444456666788899999999999999999999988654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=4.3e-09 Score=92.98 Aligned_cols=247 Identities=7% Similarity=-0.021 Sum_probs=114.6
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhCCCCCCCcch-HHHHH---HHhhc-------cCChHHHHHHHHHHHHhCCCCchHHH
Q 012234 12 MIAGYSQGGFYEECKALFREMLNSPVLRPDGVT-VVSVL---QACGQ-------SSDIVFGMEVHNFVIESHIKMDLWIC 80 (468)
Q Consensus 12 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~l~---~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (468)
++....+.+..++|+++++... .. .|+..+ |+..- ..... .|.+++|+..++.+++..+. +...+
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l-~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~ 110 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQIL-GA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTW 110 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHH-HH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHH
Confidence 3333333444567777777776 32 254432 32221 22222 23356677777776666533 55556
Q ss_pred HHHHHHHHhCCC--HHHHHHHHhhcCCC---CeehHH-HHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHh
Q 012234 81 NALIGMYAKCGS--LDYARALLDEMSDK---DEVSYS-AIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQ 151 (468)
Q Consensus 81 ~~l~~~~~~~g~--~~~A~~~~~~~~~~---~~~~~~-~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 151 (468)
..+..++...++ +++|...+++..+. +...+. .....+...+..++|+..++...+ .+...|+.+..++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 656555555443 66666666665432 233333 233445556666666666666654 234456666666666
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 012234 152 NNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRV 231 (468)
Q Consensus 152 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 231 (468)
.|++++|...+...... .|+. ......+...+..+.+...+....... +++...+..+...+...|+.++|...
T Consensus 191 ~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp HSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 66666554443332221 1111 111222333344444444444444332 22222233333344444444444444
Q ss_pred HhhccCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012234 232 FDRFKGRSL---IIWTAIISAYAAHGDASKAVSLFNEMLN 268 (468)
Q Consensus 232 ~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 268 (468)
+.+..+.++ .++..+..++...|++++|.+.+++..+
T Consensus 265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444332 2333333444444444444444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=2.3e-08 Score=80.91 Aligned_cols=115 Identities=8% Similarity=-0.108 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 012234 273 PDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALL 350 (468)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~ 350 (468)
|+...+......+.+.|++++|+..|.++... .+.++..|..+..+|.+.|++++|+..|++. ...| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 55555666666666777777777777666643 1234556666666666666666666666665 2344 355666666
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 351 YGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
.++...|++++|...|+++.++.|.+...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 666666666666666666666655544444444444333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=3.9e-07 Score=72.67 Aligned_cols=123 Identities=11% Similarity=-0.038 Sum_probs=76.9
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHHH
Q 012234 84 IGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVLD 160 (468)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 160 (468)
...+...|+++.|++.|+++.++++.+|..+..+|...|++++|++.|++..+ .+...|..+..++.+.|++++|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 44556677777777777777666666777777777777777777777777654 344567777777777777777777
Q ss_pred HHHHHHHCCCC--------------CC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 012234 161 LVREMQASGVR--------------PN-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD 206 (468)
Q Consensus 161 ~~~~m~~~~~~--------------p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 206 (468)
.|++.+..... ++ ..++..+..++.+.|++++|.+.+....+....
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 77776543100 00 123334455556666666666666655554433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=7.2e-08 Score=70.09 Aligned_cols=89 Identities=15% Similarity=0.071 Sum_probs=62.7
Q ss_pred HHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHH
Q 012234 318 VGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDE 395 (468)
Q Consensus 318 ~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 395 (468)
...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..+.++.+.+|+++..|..++.++...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 445666677777777776652 333566677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhC
Q 012234 396 ADRVREQMKES 406 (468)
Q Consensus 396 A~~~~~~m~~~ 406 (468)
|+..+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 77777777653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.1e-07 Score=69.13 Aligned_cols=106 Identities=12% Similarity=-0.009 Sum_probs=87.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCC
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGD 358 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 358 (468)
-...+...|++++|+..|++..+. .+.+...|..+..+|...|++++|+..+.+.. .+.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 455677888999999999888864 23467778888888999999999999888772 34578889999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 012234 359 VELGKFVCDHLFEIEPENTGNYIIMANLYS 388 (468)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (468)
+++|+..++++.+.+|.++.++..+.++-.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999988888776643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=2.2e-07 Score=74.19 Aligned_cols=115 Identities=14% Similarity=0.059 Sum_probs=56.4
Q ss_pred hccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHH
Q 012234 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-V-KPSAKVWGALLYGASISGDVELGK 363 (468)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~ 363 (468)
...|+++.|++.|.++. +|++.+|..+...|...|++++|++.|++.. . +.+...|..+..++...|++++|.
T Consensus 16 ~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 34445555555444321 2344444445555555555555555554441 1 223445555555555555555555
Q ss_pred HHHHHHHhhCCCCc----------------chHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 364 FVCDHLFEIEPENT----------------GNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 364 ~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..|++++...+.+. .++..++.+|.+.|++++|.+.++...+
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555554333221 2344556666666666666666655544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=1e-06 Score=75.59 Aligned_cols=193 Identities=8% Similarity=-0.004 Sum_probs=95.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC-----CchhHHHH
Q 012234 145 VISGLVQNNRHEAVLDLVREMQAS----GVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYD-----RNIYVATA 214 (468)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 214 (468)
....|...|++++|.+.|.+..+. +-+++ ..+|..+..+|.+.|++++|...++...+.... ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 355666677777777777666442 11111 235566666666777777776666655442110 11223334
Q ss_pred HHHHHHh-cCChHHHHHHHhhccC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CH-HHH
Q 012234 215 IIDTYAK-TGFLHGAQRVFDRFKG-----RS----LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQP-----DP-VTF 278 (468)
Q Consensus 215 l~~~~~~-~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~-~~~ 278 (468)
+...|.. .|++++|+..+++..+ .+ ..++..+...+...|++++|+..|++........ .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 4444432 4666666666554432 11 1235556666666666666666666665532111 11 122
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC---HhHHHHHHHHHhc--cCChHHHHHHHHhC
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS---VEHYACMVGVLSR--ARRISEATEFVSKM 337 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~--~~~~~~A~~~~~~~ 337 (468)
...+..+...|+++.|...+++..+...--++ ......++.++.. .+.+++|+..|+++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 23333445566666666666666532100011 1223344444433 23456666666555
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=3e-07 Score=79.00 Aligned_cols=126 Identities=9% Similarity=-0.087 Sum_probs=69.8
Q ss_pred HHHHHHHHHHh-CCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCch-----
Q 012234 141 TWNAVISGLVQ-NNRHEAVLDLVREMQAS----GVRPN-AVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNI----- 209 (468)
Q Consensus 141 ~~~~l~~~~~~-~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 209 (468)
++..+...|.. .|++++|+..+++..+. +..+. ..++..+...+...|++++|...++.+.........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 34455555543 47777777777665431 21111 234566667777777777777777776664322111
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHhhccCCCc--------chHHHHHHHHHH--cCChHHHHHHHHHH
Q 012234 210 -YVATAIIDTYAKTGFLHGAQRVFDRFKGRSL--------IIWTAIISAYAA--HGDASKAVSLFNEM 266 (468)
Q Consensus 210 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~--~g~~~~a~~~~~~m 266 (468)
..+...+..+...|+++.|...+++..+-++ .....++.++.. .+.+++|+..|+++
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1223444556667778888887777765332 123444555443 23466777766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.67 E-value=6.5e-08 Score=69.66 Aligned_cols=89 Identities=11% Similarity=0.060 Sum_probs=80.3
Q ss_pred HHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCCh
Q 012234 316 CMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRW 393 (468)
Q Consensus 316 ~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 393 (468)
.+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4567788899999999999987 3444 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012234 394 DEADRVREQMK 404 (468)
Q Consensus 394 ~~A~~~~~~m~ 404 (468)
++|.+.+++.+
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=3.2e-07 Score=70.78 Aligned_cols=117 Identities=7% Similarity=-0.023 Sum_probs=94.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 012234 281 VLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGD 358 (468)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 358 (468)
....|.+.|++++|...|+++.+. -+.+...|..+..+|...|++++|+..|+++ ...| +...|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 455677889999999999998864 1336778888899999999999999999887 2344 67899999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHH--HcCChHHHHHH
Q 012234 359 VELGKFVCDHLFEIEPENTGNYIIMANLYS--QAGRWDEADRV 399 (468)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~ 399 (468)
+++|...++++.+..|.++.++..+..+.. ..+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998888776643 34456666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=2.2e-07 Score=71.72 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=84.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcC
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAG 391 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (468)
+......|.+.|++++|+..|++.. .+.+...|..+...+...|++++|+..|+++++.+|.+..+|..++.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3344667889999999999999883 34468899999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 012234 392 RWDEADRVREQMKESG 407 (468)
Q Consensus 392 ~~~~A~~~~~~m~~~~ 407 (468)
++++|...+++.....
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999998754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=1.5e-07 Score=75.93 Aligned_cols=94 Identities=9% Similarity=-0.044 Sum_probs=67.6
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHH
Q 012234 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMV 318 (468)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 318 (468)
...+......+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|+++. .+.| +...|..+.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~lg 79 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFLG 79 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHHHH
Confidence 3445556667778888888888887777653 3356677777777888888888888888777 3345 466777777
Q ss_pred HHHhccCChHHHHHHHHhC
Q 012234 319 GVLSRARRISEATEFVSKM 337 (468)
Q Consensus 319 ~~~~~~~~~~~A~~~~~~~ 337 (468)
.+|.+.|++++|+..|+++
T Consensus 80 ~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 8888888888888777765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.54 E-value=2e-05 Score=66.14 Aligned_cols=226 Identities=8% Similarity=-0.036 Sum_probs=135.9
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCchhHHH
Q 012234 138 GLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH----FSNLKGGKEIHGYAVKNRYDRNIYVAT 213 (468)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 213 (468)
|+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34556666667777777788887777777665 33444444444443 334555555555544433
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 012234 214 AIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAA----HGDASKAVSLFNEMLNNGIQPDPVTFTAVLSAC---- 285 (468)
Q Consensus 214 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~---- 285 (468)
++.....+...+.. .++.+.|...++.....|.... ...+...+
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~ 120 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGK 120 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCC
Confidence 11222222222221 3455666777766666543211 11121111
Q ss_pred hccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 012234 286 AHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----ARRISEATEFVSKMPVKPSAKVWGALLYGASI----SG 357 (468)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 357 (468)
........+...+..... ..+...+..|...|.. ..+...+..+++......+......+...+.. ..
T Consensus 121 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 223455666666666553 2445556666666654 44566777777766434566667677666665 56
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHhCCCC
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQ----AGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 409 (468)
+++.|+..|+++.+.+ ++..+..|+.+|.+ ..+.++|.+.|++..+.|..
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8999999999998875 56788899999886 44799999999999888753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.2e-06 Score=66.67 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
.+|+.+..+|.+.|++++|+..+++. ...| ++.+|..+..++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35667888899999999999999887 3344 788999999999999999999999999999999999999999888777
Q ss_pred cCChHHH
Q 012234 390 AGRWDEA 396 (468)
Q Consensus 390 ~g~~~~A 396 (468)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=5.9e-07 Score=65.31 Aligned_cols=106 Identities=16% Similarity=0.026 Sum_probs=81.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCC---hHHHHHHHHhCC-CCCCH---HHHHHHHH
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARR---ISEATEFVSKMP-VKPSA---KVWGALLY 351 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~-~~~~~---~~~~~l~~ 351 (468)
..++..+...+++++|++.|++..+. -+.++.++..+..++.+.++ +++|+.+|+++- ..|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34677778888999999999988864 24466788888888876554 456888888863 34433 36788899
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 012234 352 GASISGDVELGKFVCDHLFEIEPENTGNYIIMANL 386 (468)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 386 (468)
+|...|++++|++.|+++++.+|++..+...+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999998776555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.38 E-value=0.00049 Score=58.84 Aligned_cols=251 Identities=12% Similarity=0.083 Sum_probs=127.0
Q ss_pred CCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHH
Q 012234 39 RPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGY 118 (468)
Q Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 118 (468)
.||..-...+...|.+.|.++.|..+|..+. -|..++.++.+.+++..|.+++.+.. +..+|..+...+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 3555556667777778888888888776432 24567777778888888877776553 555777777777
Q ss_pred HhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 012234 119 MVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHG 198 (468)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 198 (468)
.+.....-|.-+ ......+......++..|-..|.+++...+++..... -.++...++.++..|++.+ .++ +.+
T Consensus 80 ~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~k---l~e 153 (336)
T d1b89a_ 80 VDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQK---MRE 153 (336)
T ss_dssp HHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHH---HHH
T ss_pred HhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHH---HHH
Confidence 776655443221 1112234444556777777778888777777766543 2445556666777666643 222 222
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012234 199 YAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTF 278 (468)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 278 (468)
.+.......+ ...++..|.+.+- |..++-.|.+.|.++.|..+. ... .++....
T Consensus 154 ~l~~~s~~y~---~~k~~~~c~~~~l------------------~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~ 207 (336)
T d1b89a_ 154 HLELFWSRVN---IPKVLRAAEQAHL------------------WAELVFLYDKYEEYDNAIITM---MNH--PTDAWKE 207 (336)
T ss_dssp HHHHHSTTSC---HHHHHHHHHTTTC------------------HHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCH
T ss_pred HHHhccccCC---HHHHHHHHHHcCC------------------hHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhH
Confidence 2222111111 1122333333333 344555566667777766553 222 2333333
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC
Q 012234 279 TAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM 337 (468)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 337 (468)
...+..+.+.++.+...+++...... .| ...+.++......-+..++.+.+++-
T Consensus 208 ~~f~e~~~k~~N~e~~~~~i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 208 GQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHc---CH--HHHHHHHHHhccCCCHHHHHHHHHhc
Confidence 34455556666666555555544432 23 23455555555555555555555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.36 E-value=7.8e-06 Score=63.32 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
..|..+..+|.+.|++++|+..+++.. .+.+...|..+..++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 356667788899999999999998873 355788999999999999999999999999999999999999888888777
Q ss_pred cCChHH-HHHHHHHHHh
Q 012234 390 AGRWDE-ADRVREQMKE 405 (468)
Q Consensus 390 ~g~~~~-A~~~~~~m~~ 405 (468)
.+...+ ..+++..|-+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 665543 4455555533
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=3.2e-06 Score=65.69 Aligned_cols=112 Identities=8% Similarity=0.004 Sum_probs=80.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGASIS 356 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (468)
.+......+.+.|++++|...|.+........+.... .-......+ ...+|+.+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~---------------~~~~~~~~~----~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---------------EEAQKAQAL----RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---------------HHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch---------------HHHhhhchh----HHHHHHHHHHHHHhh
Confidence 3444555677777788887777776643211111000 000000000 124677788899999
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
|++++|+..++++++++|.++.++..++.+|...|++++|+..|++..+..
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998754
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.32 E-value=1.2e-05 Score=61.14 Aligned_cols=110 Identities=7% Similarity=-0.090 Sum_probs=77.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC---CHhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP---SVEHYACMVGVLSRARRISEATEFVSKMPVKPSAKVWGALLYGA 353 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 353 (468)
.+..-...+.+.|++.+|...|.++.......+ +....... . .....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~-----------------~----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK-----------------K----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH-----------------H----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhh-----------------h----hHHHHHHhhHHHHH
Confidence 344455666777777777777777664211111 11100000 0 01134677788889
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 354 SISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.+.|++++|++.+.++++.+|.+..+|..++.+|...|++++|+..|++..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998887643
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.2e-06 Score=63.09 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=75.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc-------hHHHHH
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTG-------NYIIMA 384 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~ 384 (468)
+..+...+.+.|++++|+..|.+.. .+.+...+..+..+|...|++++|++.++++++.+|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4456778888899999999888772 3446888999999999999999999999999999877765 455666
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 012234 385 NLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~m~~ 405 (468)
..+...+++++|++.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 777888899999999987764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.25 E-value=1.6e-06 Score=62.14 Aligned_cols=89 Identities=12% Similarity=-0.072 Sum_probs=53.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 012234 11 SMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKC 90 (468)
Q Consensus 11 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 90 (468)
.+...+.+.|++++|+..|++.. ... |-+...|..+..++.+.|++++|...++++++..+. +..++..+..+|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVC-QKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-ccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHC
Confidence 34455556666666666666665 222 234555666666666666666666666666665533 555666666666666
Q ss_pred CCHHHHHHHHhh
Q 012234 91 GSLDYARALLDE 102 (468)
Q Consensus 91 g~~~~A~~~~~~ 102 (468)
|++++|.+.|++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.25 E-value=7.7e-06 Score=62.20 Aligned_cols=127 Identities=11% Similarity=-0.004 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHH
Q 012234 242 IWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVL 321 (468)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (468)
.+......+.+.|++.+|+..|.+....- |. .....-......... ....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~-----------~~~~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IH-----------TEEWDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TT-----------CTTCCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-----------hhhhhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 45566778899999999999999987641 11 000000000011111 1234677888999
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 322 SRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 322 ~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
.+.|++++|++.++++ ...| +..+|..++.++...|++++|+..|+++++++|.|..+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999887 3344 789999999999999999999999999999999999888777666543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.2e-06 Score=63.55 Aligned_cols=93 Identities=8% Similarity=0.026 Sum_probs=78.3
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCC--cchHHHHHHHH
Q 012234 315 ACMVGVLSRARRISEATEFVSKMP--VKPSAKVWGALLYGASISG---DVELGKFVCDHLFEIEPEN--TGNYIIMANLY 387 (468)
Q Consensus 315 ~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~ 387 (468)
..++..+...+++++|++.|++.. .+.++.++..+..++.+.+ ++++|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457788889999999999999883 3557889999999998755 4567999999999988754 34789999999
Q ss_pred HHcCChHHHHHHHHHHHhCC
Q 012234 388 SQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~~ 407 (468)
.+.|++++|++.|+++.+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999998843
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.24 E-value=8.5e-06 Score=63.20 Aligned_cols=86 Identities=9% Similarity=0.005 Sum_probs=69.6
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 012234 310 SVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLY 387 (468)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (468)
....+..+..++.+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|+++.+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456777888889999999999988887 3444 5788999999999999999999999999999999988888888776
Q ss_pred HHcCChHH
Q 012234 388 SQAGRWDE 395 (468)
Q Consensus 388 ~~~g~~~~ 395 (468)
.+.....+
T Consensus 156 ~~l~~~~~ 163 (169)
T d1ihga1 156 QKIKAQKD 163 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65544443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.19 E-value=0.0011 Score=55.01 Aligned_cols=95 Identities=8% Similarity=-0.086 Sum_probs=68.9
Q ss_pred CeehHHHHHHHHHhcCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012234 107 DEVSYSAIISGYMVHGFVEKAMDLFQVMKR-PGLSTWNAVISGLVQ----NNRHEAVLDLVREMQASGVRPNAVTISSIF 181 (468)
Q Consensus 107 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 181 (468)
|+..+..|...+.+.+++++|++.|++..+ .+...+..|...|.. ..++..|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 456778888888999999999999998864 566677777778876 678899999999888765 223333333
Q ss_pred HHHH----ccCChhhHHHHHHHHHHcC
Q 012234 182 SLFS----HFSNLKGGKEIHGYAVKNR 204 (468)
Q Consensus 182 ~~~~----~~~~~~~a~~~~~~~~~~~ 204 (468)
..+. ...+.+.|...++...+.|
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccccccchhhHHHHHHHhhhhhhh
Confidence 3333 2456677777787777665
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.8e-07 Score=86.87 Aligned_cols=109 Identities=9% Similarity=-0.001 Sum_probs=42.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKM-PVKP-SAKVWGALLYGAS 354 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 354 (468)
.+..+...+.+.|+.+.|...+...... .| ..++..+...+...|++++|+..|++. ...| +...|+.|...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3444444445555555555444443321 11 123444455555555555555555544 1222 2345555555555
Q ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 012234 355 ISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ 389 (468)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (468)
..|+..+|...|.+++...|+.+.++..|+..+.+
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555554433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.16 E-value=4.1e-06 Score=65.09 Aligned_cols=65 Identities=17% Similarity=0.051 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
....|..+..++.+.|++++|+..+.++++++|.++.+|..++.+|.+.|++++|++.|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 35577788899999999999999999999999999999999999999999999999999999874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.06 E-value=3.1e-05 Score=59.78 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 344 KVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 344 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.+|..+..+|...|++++|+..++++++++|.+..+|..++.+|...|++++|...|+++++..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567788889999999999999999999999999999999999999999999999999998753
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.05 E-value=2e-05 Score=61.32 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=85.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCCh-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 012234 280 AVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRI-SEATEFVSKMPVKPSAKVWGALLYGASISGD 358 (468)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 358 (468)
.........|++++|...|.+...-+ +.... ..+. .+.+ .....-+.. .....+..+...+...|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l-----~~~~-~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW---RGPVL-----DDLR-DFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---CSSTT-----GGGT-TSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC---ccccc-----ccCc-chHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 34456778899999999999888532 22110 0000 0111 111111111 124567788999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCC
Q 012234 359 VELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKE-----SGLAKIP 412 (468)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 412 (468)
+++|+..++++++.+|.+...|..++.+|.+.|++.+|++.|+++.+ .|+.|.+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 99999999999999999999999999999999999999999999854 5776544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=0.0044 Score=52.78 Aligned_cols=246 Identities=8% Similarity=0.013 Sum_probs=144.3
Q ss_pred CCCcchHHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCcchHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 012234 3 KRDIVSWNSMIAGYSQGGFYEECKALFREMLNSPVLRPDGVTVVSVLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNA 82 (468)
Q Consensus 3 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (468)
.||..--..+...|-+.|.++.|..+|..+. . |..++..+.+.++++.|.+++.+. + +..+|..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-d---------~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~ 74 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-N---------FGRLASTLVHLGEYQAAVDGARKA---N---STRTWKE 74 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT-C---------HHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-C---------HHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHH
Confidence 4555555567778889999999999999876 3 677888889999999988876543 2 6668888
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCeehHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCChHHHH
Q 012234 83 LIGMYAKCGSLDYARALLDEMSDKDEVSYSAIISGYMVHGFVEKAMDLFQVMKR---PGLSTWNAVISGLVQNNRHEAVL 159 (468)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 159 (468)
+...+.......-|.-+ ......++.....++..|-..|.+++...+++.... .+...++.++..|++.+ .++..
T Consensus 75 ~~~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 75 VCFACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HHHHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHH
Confidence 89999888777655332 222223555667889999999999999999997543 56678899999888865 45555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhccCCC
Q 012234 160 DLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRYDRNIYVATAIIDTYAKTGFLHGAQRVFDRFKGRS 239 (468)
Q Consensus 160 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 239 (468)
+.++..- ..-| ...++..|.+.+-+++ ++..|.+.|.+++|..+.-.-.. +
T Consensus 153 e~l~~~s---~~y~---~~k~~~~c~~~~l~~e----------------------lv~Ly~~~~~~~~A~~~~i~~~~-~ 203 (336)
T d1b89a_ 153 EHLELFW---SRVN---IPKVLRAAEQAHLWAE----------------------LVFLYDKYEEYDNAIITMMNHPT-D 203 (336)
T ss_dssp HHHHHHS---TTSC---HHHHHHHHHTTTCHHH----------------------HHHHHHHTTCHHHHHHHHHHSTT-T
T ss_pred HHHHhcc---ccCC---HHHHHHHHHHcCChHH----------------------HHHHHHhcCCHHHHHHHHHHcch-h
Confidence 5444331 1222 2334455555544443 55567777777777666443221 2
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012234 240 LIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFN 299 (468)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (468)
..-....+..+.+..+.+...++.....+. .|+ ..+.++......-+..+..+.++
T Consensus 204 ~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 204 AWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp TCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHH
T ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCHHHHHHHHH
Confidence 222344455566666666655555554442 232 23444444444445544444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.84 E-value=5.4e-05 Score=57.53 Aligned_cols=64 Identities=14% Similarity=-0.061 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----------CcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 343 AKVWGALLYGASISGDVELGKFVCDHLFEIEPE-----------NTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 343 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
..+|+.+..+|...|++++|...++++++..|. ...++..++.+|...|++++|++.|++..+.
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888899999998888888765321 1235788999999999999999999998763
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.83 E-value=3.2e-05 Score=57.90 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012234 358 DVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGL 408 (468)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 408 (468)
++++|.+.|+++.+.+|++...+..|... .+|.+++.+..++|+
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 46889999999999999988777666655 356777777777765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=7e-05 Score=51.26 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=56.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 012234 314 YACMVGVLSRARRISEATEFVSKMP--------VKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384 (468)
Q Consensus 314 ~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 384 (468)
+-.+...+.+.|++++|+.+|++.. ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3456666777777777777776551 1222 567888999999999999999999999999999998888775
Q ss_pred HH
Q 012234 385 NL 386 (468)
Q Consensus 385 ~~ 386 (468)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=5.3e-05 Score=55.33 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012234 345 VWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKES 406 (468)
Q Consensus 345 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 406 (468)
.+..+...+...|++++|+..|.++++.+|.++.++..++.+|.+.|++++|++.++++++.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 67 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence 45567888999999999999999999999999999999999999999999999999998774
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=5.2e-06 Score=76.81 Aligned_cols=258 Identities=9% Similarity=-0.040 Sum_probs=140.8
Q ss_pred HHHHHHhhCCC--CCH-hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhhHHHHHHHHH
Q 012234 126 KAMDLFQVMKR--PGL-STWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAV-TISSIFSLFSHFSNLKGGKEIHGYAV 201 (468)
Q Consensus 126 ~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 201 (468)
+|.+.|++..+ |+. ..+..+..++...|++++| +++++.. .|+.. .++. -..+. ...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~-e~~Lw-~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV-EQDLW-NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH-HHHHH-HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH-HHHHH-HHHHHHHHHHHHHhc
Confidence 56777777654 443 3566677788888888876 6666543 23211 1111 11111 112345666666666
Q ss_pred HcCCCCchhHHHHH--HHHHHhcCChHHHHHHHhhccC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 012234 202 KNRYDRNIYVATAI--IDTYAKTGFLHGAQRVFDRFKG---RSLIIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPV 276 (468)
Q Consensus 202 ~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 276 (468)
+....++..-.... ...+...+.++.|+..+....+ ++...+..+...+.+.|+.++|...+...... .| ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HH
Confidence 55444443322221 2223345677888877776554 34457778888889999999999888776542 11 35
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCC-CHhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 012234 277 TFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQP-SVEHYACMVGVLSRARRISEATEFVSKM--PVKPSAKVWGALLYGA 353 (468)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 353 (468)
++..+...+...|++++|...|++..+. .| +...|+.|...+...|+..+|+..|.+. ..+|.+.++..|...+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 6777889999999999999999999864 45 5689999999999999999999999887 2467788888888776
Q ss_pred HHcCChHHHHHHHHHHHhhCCCC---cchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 354 SISGDVELGKFVCDHLFEIEPEN---TGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
.+..+..++. +..+.+ ...+..+...+...+.+++..++.+++
T Consensus 231 ~~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 231 SKALESRDEV-------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHTTSCCCC-------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred HHhhhhhhhh-------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 5443221110 001111 123455555566666666655554433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.68 E-value=2.3e-05 Score=58.70 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCC-----------hHHHHHHHHHHHhCC
Q 012234 357 GDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGR-----------WDEADRVREQMKESG 407 (468)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~~ 407 (468)
+.+++|+..|+++++++|+++.+|..++.+|...|+ +++|.+.|++..+..
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 446889999999999999999999999999987654 688888888887644
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.50 E-value=0.00019 Score=59.52 Aligned_cols=128 Identities=11% Similarity=0.003 Sum_probs=87.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCC-HhHHHHHHHHHhccCChH
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPS-VEHYACMVGVLSRARRIS 328 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 328 (468)
..+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345789999999999988863 446788888999999999999999999988854 564 444444445554444444
Q ss_pred HHHHHHHhC--CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Q 012234 329 EATEFVSKM--PVKPS-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYI 381 (468)
Q Consensus 329 ~A~~~~~~~--~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (468)
++..-.... ...|+ ...+......+...|+.++|.+.++++.+..|..+..++
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 443322221 12232 334444556677889999999999999998887766543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00019 Score=49.03 Aligned_cols=66 Identities=15% Similarity=-0.005 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------cchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 342 SAKVWGALLYGASISGDVELGKFVCDHLFEIEPEN-------TGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
+...+..+...+.+.|++++|+..|+++++..|.+ ..++..|+.+|.+.|++++|+..++++++..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 34455678889999999999999999999875433 3468899999999999999999999998753
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.49 E-value=0.0011 Score=51.09 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----hcCCCCCHhH
Q 012234 241 IIWTAIISAYAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSG----QYGIQPSVEH 313 (468)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 313 (468)
..+..+..++...|++++|+..++++.... +-+...|..++.++...|+.++|++.|+++.+ ..|+.|+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 456677888888888999998888888753 44678888888899999999998888887643 3488887655
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.39 E-value=0.0013 Score=49.49 Aligned_cols=63 Identities=13% Similarity=-0.037 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC--------CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 012234 312 EHYACMVGVLSRARRISEATEFVSKMP--------VKPS-----AKVWGALLYGASISGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 374 (468)
..|+.+..+|...|++++|.+.+++.. ..++ ...++.+..+|...|++++|+..|++++++.|
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345556666666666666665555431 1221 23566778888999999999999999888744
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.21 E-value=0.00017 Score=59.79 Aligned_cols=121 Identities=11% Similarity=0.033 Sum_probs=85.2
Q ss_pred HhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHH
Q 012234 285 CAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP-VKPS-AKVWGALLYGASISGDVELG 362 (468)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a 362 (468)
..+.|++++|+..+++.++. -+.+...+..+...|+..|++++|.+.++... ..|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 45679999999999999964 24478899999999999999999999999883 4554 45555555554444333333
Q ss_pred HHHHHHHHhh-CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012234 363 KFVCDHLFEI-EPENTGNYIIMANLYSQAGRWDEADRVREQMKESG 407 (468)
Q Consensus 363 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 407 (468)
.......... .|++...+...+..+.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 2221111111 23344455666788999999999999999987753
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.94 E-value=0.028 Score=38.82 Aligned_cols=141 Identities=9% Similarity=0.090 Sum_probs=102.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHH
Q 012234 250 YAAHGDASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISE 329 (468)
Q Consensus 250 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (468)
+.-.|..++..+++.+...+ .+..-|+.++--....-+-+-..+.++.+-+-+.+.|-. ....++..+...+
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n---- 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINN---- 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTT----
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhc----
Confidence 45568888888888887764 255667777766666677777777887776654444321 1122333333332
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012234 330 ATEFVSKMPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQMKESGLA 409 (468)
Q Consensus 330 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 409 (468)
.+...++..+.....+|+-+.-.+++..+.+.+..+|.....++.+|.+.|...++-+++.+.-+.|++
T Consensus 84 -----------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 84 -----------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp -----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred -----------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 344555667788889999999999999988888888999999999999999999999999999999974
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.2 Score=44.42 Aligned_cols=18 Identities=0% Similarity=-0.049 Sum_probs=10.7
Q ss_pred HhcCCChhHHHHHHHHhh
Q 012234 16 YSQGGFYEECKALFREML 33 (468)
Q Consensus 16 ~~~~g~~~~A~~~~~~m~ 33 (468)
..++|+..++..+...+.
T Consensus 16 a~~~~~~~~~~~~~~~L~ 33 (450)
T d1qsaa1 16 AWDNRQMDVVEQMMPGLK 33 (450)
T ss_dssp HHHTTCHHHHHHHSGGGT
T ss_pred HHHCCCHHHHHHHHhhhc
Confidence 445566666666666553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.40 E-value=0.029 Score=40.36 Aligned_cols=82 Identities=11% Similarity=-0.042 Sum_probs=50.8
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH----cCChHHH
Q 012234 325 RRISEATEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQ----AGRWDEA 396 (468)
Q Consensus 325 ~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 396 (468)
.+.++|++++++....-++.....|...|.. ..+.++|.+.|+++.+.+ ++.....|+.+|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence 3445555555544322344444444444433 346777888888777654 45667777777776 4578888
Q ss_pred HHHHHHHHhCCC
Q 012234 397 DRVREQMKESGL 408 (468)
Q Consensus 397 ~~~~~~m~~~~~ 408 (468)
.+++++..+.|.
T Consensus 115 ~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 115 VKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 888888877775
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.81 E-value=0.023 Score=39.70 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCc-chHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012234 342 SAKVWGALLYGASISG---DVELGKFVCDHLFEIEPENT-GNYIIMANLYSQAGRWDEADRVREQMKE 405 (468)
Q Consensus 342 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 405 (468)
...+--....++.++. +.++|+.+++.+.+.+|.+. ..+..|+-+|.+.|++++|.+.++++.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3344444444444332 23455555555555554432 3445555555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.26 E-value=0.21 Score=35.51 Aligned_cols=111 Identities=9% Similarity=0.004 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhc----cCChHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSR----ARRISEA 330 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A 330 (468)
++++|+.+|++..+.|.. .. ...+. .....+.++|..++++..+. | ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~-~a--~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-FG--CLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-TH--HHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-hh--hhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 567777777777776522 22 22222 23445777888888777653 2 34444555555543 4567888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 012234 331 TEFVSKMPVKPSAKVWGALLYGASI----SGDVELGKFVCDHLFEIEP 374 (468)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 374 (468)
.++|++....-++.....|...|.. ..|.++|.+.++++.+.+.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888877434456666666666655 4578888888888877653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=1.4 Score=38.66 Aligned_cols=329 Identities=11% Similarity=-0.038 Sum_probs=175.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCeehHHH-----------
Q 012234 48 VLQACGQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSD---KDEVSYSA----------- 113 (468)
Q Consensus 48 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~----------- 113 (468)
.+..+.+.++++.....+. ..+.+...-.....+....|+.+.|...+..+-. ..+..+..
T Consensus 78 ~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~l 152 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQ 152 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCC
Confidence 3445566666655443321 1223444444566666777777777666554321 12222222
Q ss_pred -------HHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012234 114 -------IISGYMVHGFVEKAMDLFQVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSH 186 (468)
Q Consensus 114 -------li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 186 (468)
-+......|+...|..+...+..........++..... +..+...... . .++......+..++.+
T Consensus 153 t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~---~--~~~~~~~~~~~~~l~r 224 (450)
T d1qsaa1 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART---T--GATDFTRQMAAVAFAS 224 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH---S--CCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc---C--CCChhhhHHHHHHHHH
Confidence 33344455666667777666654444444555444332 2222222211 1 2233333333333333
Q ss_pred --cCChhhHHHHHHHHHHcCCCCchhHHHH----HHHHHHhcCChHHHHHHHhhccC--CCcchHHHHHHHHHHcCChHH
Q 012234 187 --FSNLKGGKEIHGYAVKNRYDRNIYVATA----IIDTYAKTGFLHGAQRVFDRFKG--RSLIIWTAIISAYAAHGDASK 258 (468)
Q Consensus 187 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 258 (468)
..+.+.+...+........... .-... +...+...+..+.+...+..... .+.....-.+......+++..
T Consensus 225 la~~d~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 225 VARQDAENARLMIPSLAQAQQLNE-DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHH
T ss_pred HhccChhHHHHHHHhhhhcccccH-HHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHH
Confidence 2467777777777665432222 22221 22222334566667666655443 233333334555567788999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHhccCChHHHHHHHHhCC
Q 012234 259 AVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVGVLSRARRISEATEFVSKMP 338 (468)
Q Consensus 259 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 338 (468)
+...+..|... ..-...-.--+.+++...|+.+.|...|..+.. .++ .|..|... +.|..-.. . .....
T Consensus 304 ~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~~~-~-~~~~~ 372 (450)
T d1qsaa1 304 LNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEYEL-K-IDKAP 372 (450)
T ss_dssp HHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCCCC-C-CCCCC
T ss_pred HHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCCCC-C-cCCCC
Confidence 88888876432 122234445577888899999999999998763 233 44443322 12211000 0 00011
Q ss_pred CCCC-HHH---HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 012234 339 VKPS-AKV---WGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMANLYSQAGRWDEADRVREQM 403 (468)
Q Consensus 339 ~~~~-~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 403 (468)
..+. ... -..-+..+...|....|...+..+.... ++.-...++....+.|.++.|+....+.
T Consensus 373 ~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 1111 111 1123456778999999999998887543 4567778899999999999999877654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.79 E-value=0.31 Score=33.78 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=50.0
Q ss_pred CCHhHHHHHHHHHhcc---CChHHHHHHHHhCC-CCC-C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Q 012234 309 PSVEHYACMVGVLSRA---RRISEATEFVSKMP-VKP-S-AKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNY 380 (468)
Q Consensus 309 p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~-~~~-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 380 (468)
|+..+--...-++.+. .+.++++.+++++- ..| + ...+..|.-+|.+.|++++|.+.++++++.+|.|..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 4444444444455544 34567777777662 233 3 35777788889999999999999999999999987654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.93 E-value=0.9 Score=31.24 Aligned_cols=138 Identities=13% Similarity=0.046 Sum_probs=84.8
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CeehHHHHHHHHHhcCCHHHHHHHH
Q 012234 53 GQSSDIVFGMEVHNFVIESHIKMDLWICNALIGMYAKCGSLDYARALLDEMSDK-DEVSYSAIISGYMVHGFVEKAMDLF 131 (468)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~ 131 (468)
.-.|..++..++..+..... +..-||-+|--....-+-+-..++++.+-+- |. ...++.......+
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl----------s~C~Nlk~vv~C~ 79 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECG 79 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCc----------hhhhcHHHHHHHH
Confidence 34567777777777766643 3444555554444555555555555544321 11 1223333333333
Q ss_pred hhCCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 012234 132 QVMKRPGLSTWNAVISGLVQNNRHEAVLDLVREMQASGVRPNAVTISSIFSLFSHFSNLKGGKEIHGYAVKNRY 205 (468)
Q Consensus 132 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 205 (468)
-.+. .+....+.-+....++|+-++-.++++.+.+.+ +|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 80 ~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 80 VINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3332 334455666777888888888888888877654 77777777888888888888888888888887774
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.68 E-value=1 Score=29.25 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcCCCCCHhHHHHHHH
Q 012234 255 DASKAVSLFNEMLNNGIQPDPVTFTAVLSACAHSGLVDKAWDIFNAMSGQYGIQPSVEHYACMVG 319 (468)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 319 (468)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++|+.++.+. .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 445666677777777788999999999999999999999999998887643 334556666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.57 E-value=1.8 Score=28.02 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Q 012234 337 MPVKPSAKVWGALLYGASISGDVELGKFVCDHLFEIEPENTGNYIIMA 384 (468)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 384 (468)
+..-|++.+..+.+.+|.+.+++..|.++++-.....-++...|-.+.
T Consensus 35 ~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 35 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 346789999999999999999999999999988877544555665554
|