Citrus Sinensis ID: 012235
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 467 | 2.2.26 [Sep-21-2011] | |||||||
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.246 | 0.191 | 0.3 | 8e-06 | |
| Q9SD39 | 895 | Probable methyltransferas | no | no | 0.334 | 0.174 | 0.294 | 3e-05 | |
| Q0WT31 | 770 | Probable methyltransferas | no | no | 0.340 | 0.206 | 0.287 | 4e-05 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.372 | 0.288 | 0.276 | 6e-05 | |
| Q8L7V3 | 829 | Probable methyltransferas | no | no | 0.321 | 0.180 | 0.269 | 9e-05 | |
| Q9ZW75 | 611 | Probable methyltransferas | no | no | 0.224 | 0.171 | 0.327 | 0.0001 | |
| Q94EJ6 | 621 | Probable methyltransferas | no | no | 0.376 | 0.283 | 0.255 | 0.0002 | |
| Q9SZX8 | 633 | Probable methyltransferas | no | no | 0.239 | 0.176 | 0.3 | 0.0002 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.235 | 0.172 | 0.295 | 0.0003 | |
| Q9LYN3 | 610 | Probable methyltransferas | no | no | 0.207 | 0.159 | 0.326 | 0.0004 |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 300 SVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL 359
S VD + I +K G R +D G G ++ + ++ + VS A AL
Sbjct: 175 SAYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFAL 234
Query: 360 RGLIP--LYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417
IP L + QRLPF N+ D+ H + + W + L + RILRPGG W+
Sbjct: 235 ERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTE--FGGVYLLEVHRILRPGG-FWV 291
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 303 VDFLISDILAIKPGE-TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG 361
+DFL + I G+ TR+ LD G G +F + E++V +S A AL
Sbjct: 480 IDFLQQSLKNIAWGKRTRVILDVGCGVASFGGFLFERDVIAMSLAPKDEHEAQVQFALER 539
Query: 362 LIPL--YVTLNQRLPFFDNTMDLIHTTGFMDGWLD---MLLLDFILFDWDRILRPGG-LL 415
IP V ++RLPF DLIH W + MLLL+ +R+LRPGG +
Sbjct: 540 KIPAISAVMGSKRLPFPSRVFDLIHCARCRVPWHNEGGMLLLEL-----NRMLRPGGYFV 594
Query: 416 WIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEV--YLSALLEKP 463
W K + D ++ + K W + +KD++ +A+ +KP
Sbjct: 595 WSATPVYQKLEEDVQIWKEMSALTKSLCWELVTINKDKLNGIGAAIYQKP 644
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 8/167 (4%)
Query: 303 VDFLISDILAIKPGE-TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG 361
+DF+ AI G TR+ LD G G +F + E++V +S A AL
Sbjct: 349 IDFIQQSHPAIAWGNRTRVILDVGCGVASFGGYLFERDVLALSFAPKDEHEAQVQFALER 408
Query: 362 LIP--LYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGG-LLWID 418
IP L V +RLPF + DLIH W + +L + +R LRPGG +W
Sbjct: 409 GIPAMLNVMGTKRLPFPGSVFDLIHCARCRVPW--HIEGGKLLLELNRALRPGGFFVWSA 466
Query: 419 RFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEV--YLSALLEKP 463
K + D ++ + K W + KD++ +A+ +KP
Sbjct: 467 TPVYRKNEEDSGIWKAMSELTKAMCWKLVTIKKDKLNEVGAAIYQKP 513
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 18/192 (9%)
Query: 237 VYQKPFPINESLWKLPDGRN--VRW--SNYQC--RN--FECLSSKNPKRGYSKCTG-CFE 287
VY+K NE L PDG +RW S QC RN ++ ++ + + + K G F
Sbjct: 113 VYEK----NECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKKEGDKFH 168
Query: 288 MDKEKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTAL 347
+ S VD + I +K G R +D G G ++ + ++ + +S A
Sbjct: 169 FPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLSLAP 228
Query: 348 NLGAPFNEMIALRGLIP--LYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDW 405
AL IP L + QRLPF N D+ H + + W + L +
Sbjct: 229 RDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTE--FGGIYLLEI 286
Query: 406 DRILRPGGLLWI 417
RI+RPGG W+
Sbjct: 287 HRIVRPGG-FWV 297
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 6/156 (3%)
Query: 303 VDFLISDILAIKPGE-TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG 361
+DF+ + AI G+ +R+ LD G G +F + +++V +S A AL
Sbjct: 407 IDFIQESVPAIAWGKRSRVVLDVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALER 466
Query: 362 LIPL--YVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGG-LLWID 418
IP V RLPF D++H W + +L + +R+LRPGG +W
Sbjct: 467 GIPAISAVMGTTRLPFPGRVFDIVHCARCRVPW--HIEGGKLLLELNRVLRPGGFFVWSA 524
Query: 419 RFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEV 454
KK D ++ + KK W + +KD +
Sbjct: 525 TPVYQKKTEDVEIWKAMSELIKKMCWELVSINKDTI 560
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 316 GETRIGLDFGVGTGTFAARMREQNVTIVSTA-LNLGAPFNEMIALRGLIPLYVTLNQRLP 374
G+ R +D G G FAA + + + +++ +L ++ RGLI Y+ + L
Sbjct: 465 GKYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTLGVVYDRGLIGTYMNWCEALS 524
Query: 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI-DRF 420
+ T DLIH G +LD + IL + RILRP G + I DRF
Sbjct: 525 TYPRTYDLIHANGVFSLYLDKCDIVDILLEMQRILRPEGAVIIRDRF 571
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 16/192 (8%)
Query: 229 RCLTRASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTG-CFE 287
RCL A K Y PFP W P R+ + +Y F+ L+ + + + + G F+
Sbjct: 127 RCLVPAPKGYMTPFP-----W--PKSRD--YVHYANAPFKSLTVEKAGQNWVQFQGNVFK 177
Query: 288 MDKEKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTAL 347
+ ++ L S ++ IK G R LD G G ++ A M ++NV +S A
Sbjct: 178 FPGGGTMFPQGADAYIEELAS-VIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAP 236
Query: 348 NLGAPFNEMIALRGLIPLYVTL--NQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDW 405
AL +P + + + LP+ D+ + + W L +
Sbjct: 237 RDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPW--TANEGTYLMEV 294
Query: 406 DRILRPGGLLWI 417
DR+LRPGG W+
Sbjct: 295 DRVLRPGG-YWV 305
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 303 VDFLISDILAIKP---GETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL 359
D I DI + P G R +D G G +F A + ++++ VS A AL
Sbjct: 197 ADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHEAQVQFAL 256
Query: 360 RGLIPLYVTL--NQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417
+P + + ++RLP+ DL H + + W L L + DR+LRPGG WI
Sbjct: 257 ERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGL--YLMEVDRVLRPGG-YWI 313
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 303 VDFLISDILAIKP---GETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL 359
D I DI + P G R +D G G +F A + ++++ +S A AL
Sbjct: 214 ADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFAL 273
Query: 360 RGLIPLYVTL--NQRLPFFDNTMDLIHTTGFMDGWL--DMLLLDFILFDWDRILRPGGLL 415
+P + + ++RLP+ DL H + + W D L L + DR+LRPGG
Sbjct: 274 ERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEV----DRVLRPGG-Y 328
Query: 416 WI 417
WI
Sbjct: 329 WI 330
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 317 ETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIP--LYVTLNQRLP 374
+ R+ LD G G +F + ++NV +S A AL IP L V Q+LP
Sbjct: 228 KVRVVLDVGCGVASFGGTLLDKNVITMSFAPKDEHEAQIQFALERGIPATLAVIGTQKLP 287
Query: 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLL 415
F DN D+IH W L + +R+LRPGG
Sbjct: 288 FPDNAYDVIHCARCRVHWHGY--GGRPLLELNRVLRPGGFF 326
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 467 | ||||||
| 147840232 | 467 | hypothetical protein VITISV_043863 [Viti | 0.991 | 0.991 | 0.814 | 0.0 | |
| 225450861 | 467 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.991 | 0.812 | 0.0 | |
| 297833256 | 463 | hypothetical protein ARALYDRAFT_477828 [ | 0.989 | 0.997 | 0.741 | 0.0 | |
| 15229977 | 463 | uncharacterized protein [Arabidopsis tha | 0.989 | 0.997 | 0.741 | 0.0 | |
| 49660139 | 463 | hypothetical protein At3g05390 [Arabidop | 0.989 | 0.997 | 0.737 | 0.0 | |
| 449435669 | 473 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.987 | 0.739 | 0.0 | |
| 296089662 | 437 | unnamed protein product [Vitis vinifera] | 0.927 | 0.990 | 0.753 | 0.0 | |
| 356499988 | 463 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.993 | 0.770 | 0.0 | |
| 224123116 | 313 | predicted protein [Populus trichocarpa] | 0.670 | 1.0 | 0.900 | 1e-173 | |
| 326532372 | 483 | predicted protein [Hordeum vulgare subsp | 0.989 | 0.956 | 0.594 | 1e-169 |
| >gi|147840232|emb|CAN77378.1| hypothetical protein VITISV_043863 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/463 (81%), Positives = 424/463 (91%)
Query: 5 CFPKFRLSRAMAWLQLVLGGLVIVVSISSLFRFYAAGFFMHNEDICLHFYSVKDVYDGFD 64
CFPK RL R M LQ++LGGLVI+VSISSLFRFY+AGFF+HNEDIC HFY K+ Y+GFD
Sbjct: 5 CFPKCRLLRVMGPLQIILGGLVIIVSISSLFRFYSAGFFLHNEDICRHFYGFKEDYEGFD 64
Query: 65 IRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNFLEVEVIRPLYSA 124
I+ALS RV EVL +MESLQ+KLE TVQQ+EK K+++ I++ EYK FLE EVI+PLYSA
Sbjct: 65 IKALSARVEEVLAQMESLQNKLESTVQQMEKNKESMTANISKTEYKKFLEEEVIQPLYSA 124
Query: 125 HIALRQIRLPKAEGIGNFTMEEEPLINTFVTEEIRKYITPKKNRVGKVNIYGAEKIHNTI 184
HI+LRQIR P+AEGIGN T++EEPLIN+FV EEIRKYITPK+NR+GK+N YG K++NTI
Sbjct: 125 HISLRQIRFPRAEGIGNATIKEEPLINSFVVEEIRKYITPKENRLGKINFYGTGKVYNTI 184
Query: 185 GHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASKVYQKPFPI 244
GHACVLMKKELEEYMDYDIGSYCKDDWN AQKLM+NGCDPLPRRRCLTRASK+Y P+PI
Sbjct: 185 GHACVLMKKELEEYMDYDIGSYCKDDWNQAQKLMINGCDPLPRRRCLTRASKLYLGPYPI 244
Query: 245 NESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKWVANRSVPVD 304
NESLW++PDGRNVRWSNYQCRNFECLSSKNPKRGYSKC GCFEM+KEK KWV N S+PVD
Sbjct: 245 NESLWRIPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCAGCFEMEKEKLKWVTNSSLPVD 304
Query: 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIP 364
FLI D+L IKPGE RIGLDFGVGTGTFAARMREQNVTI+STALNLGAPF+E IALRGLIP
Sbjct: 305 FLIRDVLGIKPGEIRIGLDFGVGTGTFAARMREQNVTIISTALNLGAPFSETIALRGLIP 364
Query: 365 LYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424
LYVTLNQRLPFFDNTMDLIHT+GFMDGWLD+ L+DFILFDWDRILRPGGLLWIDRFFCN+
Sbjct: 365 LYVTLNQRLPFFDNTMDLIHTSGFMDGWLDLQLMDFILFDWDRILRPGGLLWIDRFFCNR 424
Query: 425 KDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 467
K LDDYMYMFLQFRYKKHKW+ISPKS+D+V+LSALLEKPPR++
Sbjct: 425 KALDDYMYMFLQFRYKKHKWSISPKSRDDVFLSALLEKPPRSL 467
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450861|ref|XP_002284169.1| PREDICTED: uncharacterized protein LOC100257940 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/463 (81%), Positives = 424/463 (91%)
Query: 5 CFPKFRLSRAMAWLQLVLGGLVIVVSISSLFRFYAAGFFMHNEDICLHFYSVKDVYDGFD 64
CFPK RL R M LQ++LGGLVI+VSISSLFRFY+AGFF+HNEDIC HFY K+ Y+GFD
Sbjct: 5 CFPKCRLLRVMGPLQIILGGLVIIVSISSLFRFYSAGFFLHNEDICRHFYGFKEDYEGFD 64
Query: 65 IRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNFLEVEVIRPLYSA 124
I+ALS RV EVL +MESLQ+KLE TVQQ+EK K+++ I++ EYK FLE EVI+PLYSA
Sbjct: 65 IKALSARVEEVLAQMESLQNKLESTVQQMEKNKESMTANISKTEYKKFLEEEVIQPLYSA 124
Query: 125 HIALRQIRLPKAEGIGNFTMEEEPLINTFVTEEIRKYITPKKNRVGKVNIYGAEKIHNTI 184
HI+LRQIR P+AEGIGN T++EEPLIN+FV EEIRKYITPK+NR+GK+N YG K++NTI
Sbjct: 125 HISLRQIRFPRAEGIGNATIKEEPLINSFVVEEIRKYITPKENRLGKINFYGTGKVYNTI 184
Query: 185 GHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASKVYQKPFPI 244
GHACVLMKKELEEYMDYDIGSYCKDDWN AQKLM+NGCDPLPRRRCLTRASK+Y P+PI
Sbjct: 185 GHACVLMKKELEEYMDYDIGSYCKDDWNQAQKLMINGCDPLPRRRCLTRASKLYLGPYPI 244
Query: 245 NESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKWVANRSVPVD 304
NESLW++PDGRNVRWSNYQCRNFECLSSKNPKRGYSKC GCFEM+KEK KWV N S+PVD
Sbjct: 245 NESLWRIPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCAGCFEMEKEKLKWVTNSSLPVD 304
Query: 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIP 364
FLI D+L IKPGE RIGLDFGVGTGTFAARMREQNVTI+STALNLGAPF+E IALRGLIP
Sbjct: 305 FLIRDVLGIKPGEIRIGLDFGVGTGTFAARMREQNVTIISTALNLGAPFSETIALRGLIP 364
Query: 365 LYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424
LYVTLNQRLPFFDNTMDLIHT+GFMDGWLD+ L+DFILFDWDRILRPGGLLWIDRFFC++
Sbjct: 365 LYVTLNQRLPFFDNTMDLIHTSGFMDGWLDLQLMDFILFDWDRILRPGGLLWIDRFFCDR 424
Query: 425 KDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 467
K LDDYMYMFLQFRYKKHKW+ISPKS+D+V+LSALLEKPPR++
Sbjct: 425 KALDDYMYMFLQFRYKKHKWSISPKSRDDVFLSALLEKPPRSL 467
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833256|ref|XP_002884510.1| hypothetical protein ARALYDRAFT_477828 [Arabidopsis lyrata subsp. lyrata] gi|297330350|gb|EFH60769.1| hypothetical protein ARALYDRAFT_477828 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/468 (74%), Positives = 412/468 (88%), Gaps = 6/468 (1%)
Query: 1 MRRSCFPKFRLSRAMAWLQLVLGGLVIVVSISSLFRFYAAGFFMHNEDICLHFYSVKDVY 60
M R+C P++RL R MA LQ++LG LVI VS+S LFRF++AG+F+HNED+C + Y++K+V
Sbjct: 1 MGRACLPRWRLGRLMAGLQVILGLLVITVSLSCLFRFHSAGYFLHNEDVCNNIYTIKEVS 60
Query: 61 -DGFDIRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNFLEVEVIR 119
+GFDI+AL DRV EVL +M++L +KLEKTV+++EK KD ++ E K FLE EV++
Sbjct: 61 NEGFDIKALHDRVDEVLEKMDNLYEKLEKTVKEMEKSKDG-----SKKEMKKFLEDEVMK 115
Query: 120 PLYSAHIALRQIRLPKAEGIGNFTMEEEPLINTFVTEEIRKYITPKKNRVGKVNIYGAEK 179
P Y AHI LRQIRLPK EGI N T +EEPLIN F+ EEIR+YITPK+NRVGK+N++G E+
Sbjct: 116 PFYYAHIGLRQIRLPKPEGIRNSTEKEEPLINKFLIEEIRQYITPKENRVGKINMFGTER 175
Query: 180 IHNTIGHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASKVYQ 239
++NTIGHAC LMK ELE+YMDYD+G+YC DDWNLAQKLM+NGCDPLPRRRCLTRAS YQ
Sbjct: 176 VYNTIGHACALMKIELEKYMDYDVGAYCDDDWNLAQKLMLNGCDPLPRRRCLTRASMTYQ 235
Query: 240 KPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKWVANR 299
KP+PINESLWKLPD RNVRW NYQCRNF CLSSKNPKRGY+KC+GCFEM+KE KWV N
Sbjct: 236 KPYPINESLWKLPDDRNVRWGNYQCRNFACLSSKNPKRGYTKCSGCFEMEKEGDKWVKNS 295
Query: 300 SVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL 359
++ VDF+I D+L +KPGE R+GLD+GVGTGTFAARMRE+NVTIV+TALNLGAPFNEMIAL
Sbjct: 296 TLLVDFMIEDVLRVKPGEIRLGLDYGVGTGTFAARMREKNVTIVTTALNLGAPFNEMIAL 355
Query: 360 RGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419
RGLIPLY++LNQRLPFFDNTMD+IHT G MDGW+D+LL+DF+L+DWDR+LRPGGLLWIDR
Sbjct: 356 RGLIPLYLSLNQRLPFFDNTMDMIHTAGLMDGWIDLLLMDFVLYDWDRVLRPGGLLWIDR 415
Query: 420 FFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 467
FFC KKDLDDYMYMFLQFRYKKHKWA+SPKSKDEVYLSALLEKPPRAI
Sbjct: 416 FFCKKKDLDDYMYMFLQFRYKKHKWAVSPKSKDEVYLSALLEKPPRAI 463
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229977|ref|NP_187190.1| uncharacterized protein [Arabidopsis thaliana] gi|7596772|gb|AAF64543.1| hypothetical protein [Arabidopsis thaliana] gi|50058925|gb|AAT69207.1| hypothetical protein At3g05390 [Arabidopsis thaliana] gi|332640711|gb|AEE74232.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/468 (74%), Positives = 409/468 (87%), Gaps = 6/468 (1%)
Query: 1 MRRSCFPKFRLSRAMAWLQLVLGGLVIVVSISSLFRFYAAGFFMHNEDICLHFYSVKDVY 60
M R+C P++RL R MA LQ++LG LVI VS+S L+RF++ G+F+ NED C + Y++K+V
Sbjct: 1 MGRTCLPRWRLGRLMAGLQVILGLLVITVSLSCLYRFHSVGYFLQNEDTCNNIYTIKEVS 60
Query: 61 -DGFDIRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNFLEVEVIR 119
+GFD++AL DRV EVL +M++L +KLEKTV+ +EK KD ++ E K FLE EV++
Sbjct: 61 SEGFDLKALHDRVDEVLEKMDNLYEKLEKTVKDMEKSKDG-----SKKEMKKFLEDEVMK 115
Query: 120 PLYSAHIALRQIRLPKAEGIGNFTMEEEPLINTFVTEEIRKYITPKKNRVGKVNIYGAEK 179
P Y AHI LRQIRLPK EGI N T +EEPLIN F+ EEIR+YITPK+NRVGK+N++G E+
Sbjct: 116 PFYYAHIGLRQIRLPKPEGIRNSTEKEEPLINKFLIEEIRQYITPKENRVGKINMFGTER 175
Query: 180 IHNTIGHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASKVYQ 239
++NTIGHAC LMK ELE+YMDYD+G+YC DDWNLAQKLM+NGCDPLPRRRCLTRAS YQ
Sbjct: 176 VYNTIGHACALMKMELEKYMDYDVGAYCDDDWNLAQKLMLNGCDPLPRRRCLTRASMTYQ 235
Query: 240 KPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKWVANR 299
KP+PINESLWKLPD RNVRW NYQCRNF CLSSKNPKRGY+KC+GCFEM+KEK KWV N
Sbjct: 236 KPYPINESLWKLPDDRNVRWGNYQCRNFACLSSKNPKRGYTKCSGCFEMEKEKDKWVKNS 295
Query: 300 SVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL 359
S+ VDF+I D+L +KP E RIGLD+GVGTGTFAARMRE+NVTIV+TALNLGAPFNEMIAL
Sbjct: 296 SLLVDFMIEDVLRVKPSEIRIGLDYGVGTGTFAARMREKNVTIVTTALNLGAPFNEMIAL 355
Query: 360 RGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419
RGLIPLY++LNQRLPFFDNTMD+IHTTG MDGW+D+LL+DF+L+DWDR+LRPGGLLWIDR
Sbjct: 356 RGLIPLYISLNQRLPFFDNTMDMIHTTGLMDGWIDLLLMDFVLYDWDRVLRPGGLLWIDR 415
Query: 420 FFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 467
FFC KKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI
Sbjct: 416 FFCKKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 463
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|49660139|gb|AAT68360.1| hypothetical protein At3g05390 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/468 (73%), Positives = 408/468 (87%), Gaps = 6/468 (1%)
Query: 1 MRRSCFPKFRLSRAMAWLQLVLGGLVIVVSISSLFRFYAAGFFMHNEDICLHFYSVKDVY 60
M R+C P++RL R MA LQ++LG LVI VS+S L+RF++ G+F+ NED C + Y++K+V
Sbjct: 1 MGRTCLPRWRLGRLMAGLQVILGLLVITVSLSRLYRFHSVGYFLQNEDTCNNIYTIKEVS 60
Query: 61 -DGFDIRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNFLEVEVIR 119
+GFD++AL DRV EVL +M++L +KLEKTV+ +EK KD ++ E K FLE EV++
Sbjct: 61 SEGFDLKALHDRVDEVLEKMDNLYEKLEKTVKDMEKSKDG-----SKKEMKKFLEDEVMK 115
Query: 120 PLYSAHIALRQIRLPKAEGIGNFTMEEEPLINTFVTEEIRKYITPKKNRVGKVNIYGAEK 179
P Y AHI LRQIRLPK EGI N T +EEPLIN F+ EEIR+YITPK+NRVGK+N++G E+
Sbjct: 116 PFYYAHIGLRQIRLPKPEGIRNSTEKEEPLINKFLIEEIRQYITPKENRVGKINMFGTER 175
Query: 180 IHNTIGHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASKVYQ 239
++NTIGHAC LMK ELE+YMDYD+G+YC DDWNLAQKLM+NGCDPLPRRRCLTRAS YQ
Sbjct: 176 VYNTIGHACALMKMELEKYMDYDVGAYCDDDWNLAQKLMLNGCDPLPRRRCLTRASMTYQ 235
Query: 240 KPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKWVANR 299
KP+PINESLWKLPD RNVRW NYQCRNF CLSSKNPKRGY+KC+GCFEM+KEK KWV N
Sbjct: 236 KPYPINESLWKLPDDRNVRWGNYQCRNFACLSSKNPKRGYTKCSGCFEMEKEKDKWVKNS 295
Query: 300 SVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL 359
S+ VDF+I D+L +KP E RIGLD+GVGTGTFAARMRE+NVTIV+TALNLGAPFNEMIAL
Sbjct: 296 SLLVDFMIEDVLRVKPSEIRIGLDYGVGTGTFAARMREKNVTIVTTALNLGAPFNEMIAL 355
Query: 360 RGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419
RGLIPLY++LNQRLPFFDNTMD+IHTTG MDGW+D+LL+DF+L+DWDR+LRPGGL W+DR
Sbjct: 356 RGLIPLYISLNQRLPFFDNTMDMIHTTGLMDGWIDLLLMDFVLYDWDRVLRPGGLPWVDR 415
Query: 420 FFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 467
FFC KKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI
Sbjct: 416 FFCKKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 463
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435669|ref|XP_004135617.1| PREDICTED: uncharacterized protein LOC101207467 [Cucumis sativus] gi|449485703|ref|XP_004157250.1| PREDICTED: uncharacterized LOC101207467 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/473 (73%), Positives = 413/473 (87%), Gaps = 6/473 (1%)
Query: 1 MRRSCFPKFRLSRAMAWLQLVLGGLVIVVSISSLFRFYAAGFFMHNEDICLHFYSV-KDV 59
M ++ + RL R M WLQ++L GLVI+++ SLF+FY+AGF H +D+C +FY+ +
Sbjct: 1 MGKTMITRSRLGRTMGWLQILLIGLVIIMTTLSLFKFYSAGFIFHKDDVCRYFYTTTRHA 60
Query: 60 YD-GFDIRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDK-TITRLEYKNFLEVEV 117
Y+ FD +ALS+RV EVL+++ESLQ+KLE TV+++ K K L+ IT +E+K +LE EV
Sbjct: 61 YEETFDAKALSNRVEEVLDQLESLQEKLEFTVEEMGKNKQVLNNGKITMIEHKKYLEDEV 120
Query: 118 IRPLYSAHIALRQIRLPKAE--GIGNFTMEEEPLINTFVTEEIRKYITPKKNRVGKVNIY 175
I+PLY+AHIALRQIRLPK E G + M+EEPLIN FV EEIRKYI+PKK+R+GK+N+Y
Sbjct: 121 IKPLYNAHIALRQIRLPKVEKNGQNSSAMKEEPLINNFVVEEIRKYISPKKSRIGKLNMY 180
Query: 176 GAEKIHNTIGHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRAS 235
E I+NTIGHACVL +KELE+YMDYDIGSYCKDDWNLAQKLM+NGCDPLPRRRCLTRAS
Sbjct: 181 MTENIYNTIGHACVLYRKELEDYMDYDIGSYCKDDWNLAQKLMLNGCDPLPRRRCLTRAS 240
Query: 236 KVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKW 295
KVYQKP+P+NESLWK+PD RNVRWSNYQCRNF CLSS NPK+GY+KC+GCFEM+KEK KW
Sbjct: 241 KVYQKPYPLNESLWKMPDDRNVRWSNYQCRNFSCLSSNNPKKGYNKCSGCFEMEKEKLKW 300
Query: 296 V-ANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFN 354
V +N S+ VDF ISD+LAIKPGE RIGLDFG+ TG+FAARMRE+NVTIV+TALNLGAPFN
Sbjct: 301 VISNSSLAVDFAISDVLAIKPGEIRIGLDFGISTGSFAARMREENVTIVTTALNLGAPFN 360
Query: 355 EMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGL 414
E IALRGL PLY+TLNQRLP FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDR+LRPGGL
Sbjct: 361 EFIALRGLFPLYLTLNQRLPLFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRVLRPGGL 420
Query: 415 LWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 467
LWIDRFFC++KDLDDYMYMFLQFRYKKHKW+I+PKSK+EVYLSALLEKPPRAI
Sbjct: 421 LWIDRFFCDRKDLDDYMYMFLQFRYKKHKWSIAPKSKNEVYLSALLEKPPRAI 473
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089662|emb|CBI39481.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/463 (75%), Positives = 395/463 (85%), Gaps = 30/463 (6%)
Query: 5 CFPKFRLSRAMAWLQLVLGGLVIVVSISSLFRFYAAGFFMHNEDICLHFYSVKDVYDGFD 64
CFPK RL R M LQ++LGGLVI+VSISSLFRFY+AGFF+HNEDIC HFY K+ Y+GFD
Sbjct: 5 CFPKCRLLRVMGPLQIILGGLVIIVSISSLFRFYSAGFFLHNEDICRHFYGFKEDYEGFD 64
Query: 65 IRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNFLEVEVIRPLYSA 124
I+ALS RV EVL +MESLQ+KLE TVQQ+EK K+++ I++ EYK FLE EVI+PLYSA
Sbjct: 65 IKALSARVEEVLAQMESLQNKLESTVQQMEKNKESMTANISKTEYKKFLEEEVIQPLYSA 124
Query: 125 HIALRQIRLPKAEGIGNFTMEEEPLINTFVTEEIRKYITPKKNRVGKVNIYGAEKIHNTI 184
HI+LRQIR P+AEGIGN T++EEPLIN+FV EEIRKYITPK+NR+GK+N YG K++NTI
Sbjct: 125 HISLRQIRFPRAEGIGNATIKEEPLINSFVVEEIRKYITPKENRLGKINFYGTGKVYNTI 184
Query: 185 GHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASKVYQKPFPI 244
GHACVLMKKELEEYMDYDIGSYCKDDWN AQKLM+NGCDPLPRRRCLTRASK+Y P+PI
Sbjct: 185 GHACVLMKKELEEYMDYDIGSYCKDDWNQAQKLMINGCDPLPRRRCLTRASKLYLGPYPI 244
Query: 245 NESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKWVANRSVPVD 304
NESLW++PDGRNVRWSNYQCRNFECLSSKNPKRGYSKC GCFEM+KEK KWV N S+PVD
Sbjct: 245 NESLWRIPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCAGCFEMEKEKLKWVTNSSLPVD 304
Query: 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIP 364
FLI D+L IKPGE RIGLDFGVGTGTFAARMREQNVTI+STALNLGAPF+E IALRGLIP
Sbjct: 305 FLIRDVLGIKPGEIRIGLDFGVGTGTFAARMREQNVTIISTALNLGAPFSETIALRGLIP 364
Query: 365 LYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424
LY L+DFILFDWDRILRPGGLLWIDRFFC++
Sbjct: 365 LY------------------------------LMDFILFDWDRILRPGGLLWIDRFFCDR 394
Query: 425 KDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 467
K LDDYMYMFLQFRYKKHKW+ISPKS+D+V+LSALLEKPPR++
Sbjct: 395 KALDDYMYMFLQFRYKKHKWSISPKSRDDVFLSALLEKPPRSL 437
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499988|ref|XP_003518817.1| PREDICTED: uncharacterized protein LOC100782372 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/470 (77%), Positives = 418/470 (88%), Gaps = 10/470 (2%)
Query: 1 MRRSCFPKFRLSRAMAWLQLVLGGLVIVVSISSLFRFYAAGFFMHNEDICLHFYSVKDVY 60
M RSCFPK +L+R M W+Q++LGGLVI+VS+ SL RFY+AGFF+HNEDIC HFY+++DV
Sbjct: 1 MGRSCFPKCKLARIMGWIQIILGGLVILVSLLSLTRFYSAGFFLHNEDICQHFYNLRDVS 60
Query: 61 DGFDIRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNFLEVEVIRP 120
DGFD+++ SDRVGEV++ +E+LQ KLE VQ++EK K T L+ K FLE +++ P
Sbjct: 61 DGFDVKSFSDRVGEVIDMLEALQAKLESKVQEMEKNKG------TMLD-KKFLEDQIVSP 113
Query: 121 LYSAHIALRQIRLPKAEGIGNFTMEEEPLINTFVTEEIRKYITPKKNRVGKVNIYGAEKI 180
L+SA++ALRQIR+PK + N T++E+ LIN F+ EEIRKYITPK+NRVGK+N+YGA+K+
Sbjct: 114 LHSANVALRQIRVPKVDEGTNSTVKEDHLINFFIIEEIRKYITPKENRVGKINLYGADKV 173
Query: 181 HNTIGHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASKVYQK 240
+NTIGHACVL KKELE+YMDYDIGSYC DDWNLAQKLM+NGCDPLPRRRCLTRASK YQK
Sbjct: 174 YNTIGHACVLYKKELEKYMDYDIGSYCDDDWNLAQKLMLNGCDPLPRRRCLTRASKEYQK 233
Query: 241 PFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKWVA--- 297
P PINESLW+LPDGRNVRW NYQCRNFECLSSKNPKRGYSKC GCF+M+KEK KWV
Sbjct: 234 PHPINESLWRLPDGRNVRWGNYQCRNFECLSSKNPKRGYSKCIGCFQMEKEKLKWVTNNN 293
Query: 298 NRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMI 357
N S+ VDFLISD+LAIK GE RIGLD+G+GTGTFAARMREQNVTIVSTALNLGAPFNEMI
Sbjct: 294 NNSLVVDFLISDVLAIKQGEVRIGLDYGIGTGTFAARMREQNVTIVSTALNLGAPFNEMI 353
Query: 358 ALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417
ALRGL+PLYVTLNQRLPFFDNTMDL+HTTGFMDGW+D+LLLDFIL+DWDRILRPGGLLWI
Sbjct: 354 ALRGLVPLYVTLNQRLPFFDNTMDLVHTTGFMDGWIDLLLLDFILYDWDRILRPGGLLWI 413
Query: 418 DRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 467
DRFFCN+ DLDDYMYMFLQ RYKKHKW ISPKSK+EVYLSALLEKPPRAI
Sbjct: 414 DRFFCNRNDLDDYMYMFLQLRYKKHKWVISPKSKEEVYLSALLEKPPRAI 463
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123116|ref|XP_002318999.1| predicted protein [Populus trichocarpa] gi|222857375|gb|EEE94922.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust.
Identities = 282/313 (90%), Positives = 302/313 (96%)
Query: 153 FVTEEIRKYITPKKNRVGKVNIYGAEKIHNTIGHACVLMKKELEEYMDYDIGSYCKDDWN 212
FV EEIRKYITPK+NRVG NIYG E+I+NTIGHACVLMKKELEEYMDYDIGSYCKDDW+
Sbjct: 1 FVVEEIRKYITPKENRVGNTNIYGTERIYNTIGHACVLMKKELEEYMDYDIGSYCKDDWS 60
Query: 213 LAQKLMVNGCDPLPRRRCLTRASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSS 272
L+QKLMVNGCDPLPRRRCLTRASKVYQKP+PINESLW+LPD RNVRWS YQCRNF+CLSS
Sbjct: 61 LSQKLMVNGCDPLPRRRCLTRASKVYQKPYPINESLWRLPDDRNVRWSTYQCRNFQCLSS 120
Query: 273 KNPKRGYSKCTGCFEMDKEKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFA 332
KNPKRGYSKCTGCFEMDKEK KWV N S+PVDFLI D+LAIKPGE RIGLDFGVGTGTFA
Sbjct: 121 KNPKRGYSKCTGCFEMDKEKLKWVTNSSLPVDFLIKDVLAIKPGEIRIGLDFGVGTGTFA 180
Query: 333 ARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392
ARM+EQNVT+VSTALNLGAPF+EMIALRGL+PLYVTLNQRLPFFDNTMDLIHTTGFMDGW
Sbjct: 181 ARMKEQNVTVVSTALNLGAPFSEMIALRGLVPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 240
Query: 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKD 452
+D++L+DFILFDWDRILRPGGLLWIDRFFCN+KDLDDYMYMFLQFRYKKH+WAISPKSKD
Sbjct: 241 IDLMLIDFILFDWDRILRPGGLLWIDRFFCNRKDLDDYMYMFLQFRYKKHRWAISPKSKD 300
Query: 453 EVYLSALLEKPPR 465
EVYLSALLEKPPR
Sbjct: 301 EVYLSALLEKPPR 313
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326532372|dbj|BAK05115.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 284/478 (59%), Positives = 359/478 (75%), Gaps = 16/478 (3%)
Query: 5 CFPKFRLSRAMAWLQLVLGGLVIVVSISSLFRFYAAGFFMHNEDI---CLHFYSV-KDVY 60
C + R SR M +QLV+G VI +S++SL RFY F+ D C ++V D Y
Sbjct: 6 CLARCRFSRLMVAMQLVMGVFVICISMASLHRFYTTDSFLPGLDDSANCARLHTVGADGY 65
Query: 61 DGFDIRALSDRVGEVLNRMESLQDKLEKTV-----QQLEKEKDALDKTITRLEYKNFLEV 115
GFDIRAL+DRV +VL ++ LQDKLE T + + + + +T E++ FLE
Sbjct: 66 AGFDIRALADRVDDVLVQLAELQDKLEATALKIGKKTKKGKPHGKQENMTLPEFRRFLED 125
Query: 116 EVIRPLYSAHIALRQIRLPKAEGIGNFTMEE--EPLINTFVTEEIRKYITPKKNRVGKVN 173
EVI PLY AHI+LR IR+P+ + G +PL+N F+ EE RKY+T K NR G+ N
Sbjct: 126 EVIHPLYGAHISLRLIRIPRPDPDGGDDDAPAVDPLVNFFMAEETRKYVTTKGNREGRPN 185
Query: 174 IYGAEKIHNTIGHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTR 233
+YG + + +IGHACVLM++EL+EYM YD+GSYC DDW+L Q+LM+ GCDPLPRRRCL R
Sbjct: 186 VYGTNRTYGSIGHACVLMRRELDEYMSYDVGSYCPDDWDLGQRLMLGGCDPLPRRRCLAR 245
Query: 234 ASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKP 293
ASK++Q+P PINESLWKLPD NVRWS Y CR + CLS+KNP+ GYS+C GCF+MD+EK
Sbjct: 246 ASKLFQRPLPINESLWKLPDDGNVRWSRYHCRGYRCLSAKNPRPGYSRCVGCFDMDREKR 305
Query: 294 KWV-----ANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALN 348
+WV A+ + DF I ++LA+KPGE RIGLD VGTG+FAARMRE+ VTIVS ALN
Sbjct: 306 QWVNTSRNASTTSLADFRIDEVLAVKPGELRIGLDVSVGTGSFAARMRERGVTIVSAALN 365
Query: 349 LGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRI 408
LGAPF E +ALRGL+PLY T++QRLPFFDNTMD++HT GF +GW+D+ L+DF+LFDWDR+
Sbjct: 366 LGAPFAETVALRGLVPLYATMSQRLPFFDNTMDIVHTAGFFEGWVDLQLMDFVLFDWDRV 425
Query: 409 LRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRA 466
LRPGGLLW+DRF C ++DLDDYMYMFLQFRYKKH+W +S KSKDEVYLSALLEKPPR+
Sbjct: 426 LRPGGLLWVDRFACARRDLDDYMYMFLQFRYKKHRWVVSFKSKDEVYLSALLEKPPRS 483
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 467 | ||||||
| TAIR|locus:2079812 | 463 | AT3G05390 [Arabidopsis thalian | 0.989 | 0.997 | 0.698 | 2e-182 | |
| TAIR|locus:2125028 | 659 | AT4G01240 [Arabidopsis thalian | 0.670 | 0.474 | 0.614 | 2.7e-107 | |
| TAIR|locus:2164491 | 414 | AT5G40830 [Arabidopsis thalian | 0.715 | 0.806 | 0.379 | 7.9e-62 | |
| TAIR|locus:2086543 | 410 | AT3G27230 [Arabidopsis thalian | 0.659 | 0.751 | 0.388 | 7.1e-61 | |
| TAIR|locus:2019312 | 378 | AT1G29790 [Arabidopsis thalian | 0.565 | 0.698 | 0.404 | 6.2e-46 |
| TAIR|locus:2079812 AT3G05390 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1770 (628.1 bits), Expect = 2.0e-182, P = 2.0e-182
Identities = 327/468 (69%), Positives = 378/468 (80%)
Query: 1 MRRSCFPKFRLSRAMAWLQXXXXXXXXXXXXXXXFRFYAAGFFMHNEDICLHFYSVKDVY 60
M R+C P++RL R MA LQ +RF++ G+F+ NED C + Y++K+V
Sbjct: 1 MGRTCLPRWRLGRLMAGLQVILGLLVITVSLSCLYRFHSVGYFLQNEDTCNNIYTIKEVS 60
Query: 61 -DGFDIRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNFLEVEVIR 119
+GFD++AL DRV EVL +M++L +KLEKTV+ +EK KD K E K FLE EV++
Sbjct: 61 SEGFDLKALHDRVDEVLEKMDNLYEKLEKTVKDMEKSKDGSKK-----EMKKFLEDEVMK 115
Query: 120 PLYSAHIALRQIRLPKAEGIGNFTMEEEPLINTFVTEEIRKYITPKKNRVGKVNIYGAEK 179
P Y AHI LRQIRLPK EGI N T +EEPLIN F+ EEIR+YITPK+NRVGK+N++G E+
Sbjct: 116 PFYYAHIGLRQIRLPKPEGIRNSTEKEEPLINKFLIEEIRQYITPKENRVGKINMFGTER 175
Query: 180 IHNTIGHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASKVYQ 239
++NTIGHAC LMK ELE+YMDYD+G+YC DDWNLAQKLM+NGCDPLPRRRCLTRAS YQ
Sbjct: 176 VYNTIGHACALMKMELEKYMDYDVGAYCDDDWNLAQKLMLNGCDPLPRRRCLTRASMTYQ 235
Query: 240 KPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKWVANR 299
KP+PINESLWKLPD RNVRW NYQCRNF CLSSKNPKRGY+KC+GCFEM+KEK KWV N
Sbjct: 236 KPYPINESLWKLPDDRNVRWGNYQCRNFACLSSKNPKRGYTKCSGCFEMEKEKDKWVKNS 295
Query: 300 SVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL 359
S+ VDF+I D+L +KP E RIGLD+GVGTGTFAARMRE+NVTIV+TALNLGAPFNEMIAL
Sbjct: 296 SLLVDFMIEDVLRVKPSEIRIGLDYGVGTGTFAARMREKNVTIVTTALNLGAPFNEMIAL 355
Query: 360 RGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGXXXXXXXXXXXXXXXXXXRPGGLLWIDR 419
RGLIPLY++LNQRLPFFDNTMD+IHTTG MDG RPGGLLWIDR
Sbjct: 356 RGLIPLYISLNQRLPFFDNTMDMIHTTGLMDGWIDLLLMDFVLYDWDRVLRPGGLLWIDR 415
Query: 420 FFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 467
FFC KKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI
Sbjct: 416 FFCKKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRAI 463
|
|
| TAIR|locus:2125028 AT4G01240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
Identities = 199/324 (61%), Positives = 235/324 (72%)
Query: 153 FVTEEIRKYITPKKNRVGKVNIYGAEKIHNTIGHACVLMKKELEEYMDYDIGSYCKDDWN 212
F+ EEI+KYI K NR+GK N GA +IGHAC MKK+LEEYMDYD+G C DDW
Sbjct: 333 FMREEIKKYIKIKPNRLGKQNFMGANGTFTSIGHACFAMKKDLEEYMDYDVGEICNDDWR 392
Query: 213 LAQKLMVNGCDPLPRRRCLTRASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSS 272
LAQKLMV+GCDPLPRRRC +R ++Y KPFPINESLWKLPD RNVRW Y+C+NF CL+S
Sbjct: 393 LAQKLMVHGCDPLPRRRCFSRGPQLYHKPFPINESLWKLPDNRNVRWGQYKCKNFACLAS 452
Query: 273 KNPKR-GYSKCTGCFEMDK-EKPKWVANRSV-P-----VDFLISDILAIKPGETRIGLDF 324
R G+ KCT CF + E P+W+ + P DF I+++L IKPGE RIGLDF
Sbjct: 453 NTTARKGFFKCTDCFNLTHHESPRWLNRGEIDPETNQTADFSIAEVLEIKPGEIRIGLDF 512
Query: 325 GVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIH 384
+GTGTFAARMREQNVTIVS +NLGAPFNEMIALRGL+PLY+T+NQRLPFFD+T+D+IH
Sbjct: 513 SIGTGTFAARMREQNVTIVSATINLGAPFNEMIALRGLVPLYLTVNQRLPFFDSTLDMIH 572
Query: 385 TTGFMDGXXXXXXXXXXXXXXXXXXRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444
TT F+DG RPGGLLWID FFC K+D+ DYM F RY+KHKW
Sbjct: 573 TTRFLDGWIDLILLDFVLFDWDRVLRPGGLLWIDGFFCLKEDVSDYMEAFKALRYRKHKW 632
Query: 445 AISPKS-KD--EVYLSALLEKPPR 465
+ PK KD EV+ SA+LEKPPR
Sbjct: 633 VVVPKKDKDDKEVFFSAVLEKPPR 656
|
|
| TAIR|locus:2164491 AT5G40830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 136/358 (37%), Positives = 205/358 (57%)
Query: 117 VIRPLYSAHIALRQIRLPKAEGIGNFTMEEEPLINTFVTEEIRKYITPKKNRVGKVNIYG 176
++R + S+H L Q+ + + IG +++ L V +E++ ++ + +GK + G
Sbjct: 71 ILREIDSSHHTLTQM---EKQIIGYESLD---LSQQEVPQELKLFLQQHQLPLGKDSRTG 124
Query: 177 AEKIHNTIGHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASK 236
++ ++GH+C + L +YM Y++ C DDW+LAQKL++ C+PLPRRRCL +K
Sbjct: 125 ITQMVASVGHSCEMSLDLLSQYMSYNVFEKCPDDWSLAQKLILRACEPLPRRRCL---AK 181
Query: 237 VYQKP----FPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEM--DK 290
KP FP +SLW+ +V WS C++FECL K R C GCF++
Sbjct: 182 TVHKPGLALFP--DSLWRPVGNSSVNWSGLGCKSFECLKGKKLSRD---CVGCFDLATSH 236
Query: 291 EKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLG 350
EK ++V DFLI D+L + G+ RIG D G+GTFAARM E+NV I+S LN+
Sbjct: 237 EKDRFVKVNG-KTDFLIDDVLDLGDGKIRIGFDISSGSGTFAARMAEKNVNIISNTLNID 295
Query: 351 APFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGXXXXX--XXXXXXXXXXXX 408
APF+E IA RG+ PL+++L+QRLPF+DN DLIH + +D
Sbjct: 296 APFSEFIAARGIFPLFMSLDQRLPFYDNVFDLIHASNGLDLAVSNKPEKLEFLMFDLDRI 355
Query: 409 XRPGGLLWIDRFFCNKKDLDDYMYMFLQ-FRYKKHKWAISPKSKDEVYLSALLEKPPR 465
+PGGL W+D F+C + + ++ F YKK KW + K+ EV+LSA+L+KP R
Sbjct: 356 LKPGGLFWLDNFYCGNDEKKRVLTRLIERFGYKKLKWVVGEKTDAEVFLSAVLQKPAR 413
|
|
| TAIR|locus:2086543 AT3G27230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 122/314 (38%), Positives = 183/314 (58%)
Query: 154 VTEEIRKYITPKKNRVGKVNIYGAEKIHNTIGHACVLMKKELEEYMDYDIGSYCKDDWNL 213
+ E++ ++ + +GK + G ++ +++GH+C L +YM Y + C DDW+L
Sbjct: 102 IVPELKLFLQRHQLPLGKDSRTGITEMVSSVGHSCGKSTDLLSQYMSYKVFDRCPDDWSL 161
Query: 214 AQKLMVNGCDPLPRRRCLTRASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSSK 273
QKL++ C+PLPRRRCL + + Q +SLW+ ++V WS C++F+CL K
Sbjct: 162 GQKLILRACEPLPRRRCLAKTVQK-QDLSKSPDSLWRSVSNKSVNWSGLGCKSFDCLKGK 220
Query: 274 NPKRGYSKCTGCFEMDKEKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAA 333
+ +C GCF++ EK ++V + DFLI D+L + G+ RIG D G+GTFAA
Sbjct: 221 KLSK---ECVGCFDLGVEKDRFVKVKGKN-DFLIDDVLGLGSGKIRIGFDISGGSGTFAA 276
Query: 334 RMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGXX 393
RM E+NVT+++ LN GAPF+E IA RGL PL+++L+ R PF DN DLIH + +D
Sbjct: 277 RMAEKNVTVITNTLNNGAPFSEFIAARGLFPLFLSLDHRFPFLDNVFDLIHASSGLDVEG 336
Query: 394 XXXXXXXXXXXXXXXXRPGGLLWIDRFFC-NKKDLDDYMYMFLQFRYKKHKWAISPKSKD 452
+P GL W+D F+C N + + M +F YKK KW I K+
Sbjct: 337 KAEKLEFLMFDLDRVLKPRGLFWLDNFYCANDEKKKELTRMIERFGYKKLKWVIGEKADA 396
Query: 453 EVYLSALLEKPPRA 466
+VYLSA+L+KP RA
Sbjct: 397 QVYLSAVLQKPVRA 410
|
|
| TAIR|locus:2019312 AT1G29790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 116/287 (40%), Positives = 164/287 (57%)
Query: 184 IGHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASKVYQKPFP 243
I AC L EYM+Y S C D +L +KL++ GC PLPRRRC +R P
Sbjct: 105 IASACHNYPDLLHEYMNYTPFSLCPSDTDLVEKLILRGCHPLPRRRCFSRT--------P 156
Query: 244 INESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKWVANRSVPV 303
N S K P+ NV WS Y C++F+CL +K G+ ++K K ++ A +S +
Sbjct: 157 RNPSDSK-PES-NVLWSYYSCKSFDCLITKFSDLGFD-----LSLEKSKSQFSAYKS-EL 208
Query: 304 DFLISDILAI-KPGET--RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR 360
D IS +L I K + R+G+D G GTG+FAA M+ +NVT+++T +N AP++E +A+R
Sbjct: 209 DLPISQLLQIAKSANSVLRLGIDVGGGTGSFAAAMKARNVTVLTTTMNFNAPYSEAVAMR 268
Query: 361 GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGXXXXXXXXXXXXXXXXXXRPGGLLWIDRF 420
GL+PL+V L QRLP FD +DL+ ++ R GG LW+DRF
Sbjct: 269 GLVPLHVPLQQRLPVFDGVVDLVRCGRAVNRWIPVTVMEFFFFDLDRILRGGGYLWLDRF 328
Query: 421 FCNKKDLDD-YMYMFLQFRYKKHKWAISPK--SKD-EVYLSALLEKP 463
F K DL++ Y M + YKK KWA++ K SK EV+L+ALL+KP
Sbjct: 329 FSKKVDLENVYAPMIGKLGYKKVKWAVANKADSKHGEVFLTALLQKP 375
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.140 0.434 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 467 434 0.00087 118 3 11 22 0.49 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 623 (66 KB)
Total size of DFA: 300 KB (2155 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 45.09u 0.14s 45.23t Elapsed: 00:00:03
Total cpu time: 45.10u 0.14s 45.24t Elapsed: 00:00:03
Start: Mon May 20 18:56:30 2013 End: Mon May 20 18:56:33 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 467 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 5e-06 | |
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 2e-04 | |
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.001 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-06
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 322 LDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMD 381
LD G GTG A + + V T ++L + R V + LPF D + D
Sbjct: 1 LDVGCGTGLLAEALARRGGARV-TGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFD 59
Query: 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417
++ ++ + D + L + R+L+PGG L I
Sbjct: 60 VVVSSLVLHHLPD---PERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 303 VDFLISDILAI-KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL-R 360
+DFL I I G R LD G G +F A + ++V +S A AL R
Sbjct: 102 IDFLAQMIPDIAWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALER 161
Query: 361 GLIPLYVTL--NQRLPFFDNTMDLIHTTGFMDGWLD---MLLLDFILFDWDRILRPGG 413
G +P + + +RLP+ + D+ H + + W +LLL+ DR+LRPGG
Sbjct: 162 G-VPAMLGVLGTRRLPYPSRSFDMAHCSRCLIPWHANDGILLLEV-----DRVLRPGG 213
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 311 LAIKPGETRIGLDFGVGTGTFAARMREQ-----NVTIVSTALNLGAPFNEMIALRGLIPL 365
L I G R +D G G FAA + + NV V + L I RGLI +
Sbjct: 359 LLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPV-----IYDRGLIGI 413
Query: 366 YVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417
Y + + T DL+H + L+ IL + DRILRPGG + I
Sbjct: 414 YHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVII 465
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 467 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.84 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.81 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.72 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.69 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.64 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.64 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.58 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.57 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.53 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.52 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.52 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.52 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.52 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.5 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.5 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.49 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.46 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.46 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.46 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.46 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.45 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.44 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.43 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.43 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.41 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.39 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.39 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.39 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.38 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.37 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.36 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.36 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.35 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.34 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.34 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.33 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.33 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.32 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.32 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.3 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.3 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.3 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.3 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.28 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.28 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.27 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.25 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.25 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.24 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.23 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.22 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.22 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.22 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.21 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.19 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.19 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.17 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.17 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.17 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.15 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.15 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.14 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.14 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.13 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.12 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.09 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.09 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.09 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.09 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.09 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.09 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.08 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.08 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.07 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.07 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.06 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.06 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.05 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.04 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.04 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.04 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.03 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.03 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.02 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.02 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.01 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.01 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.01 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.0 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.98 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.95 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.95 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.94 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.94 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.93 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.93 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.93 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.91 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.91 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.88 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.86 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.86 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.86 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.85 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.85 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.84 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.83 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.83 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.82 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.81 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.8 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.79 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.79 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.78 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.77 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.77 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.77 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.76 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.75 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.75 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.75 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.73 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.72 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.7 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.68 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.68 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.68 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.67 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.65 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.63 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.63 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.57 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.55 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.52 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.47 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.46 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.44 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.43 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.43 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.4 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.39 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.37 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.34 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.33 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.33 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.31 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.31 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.3 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.29 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.26 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.24 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.21 | |
| PLN02366 | 308 | spermidine synthase | 98.19 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.18 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.18 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.17 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.15 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.15 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.15 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.15 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.14 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.12 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.12 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.11 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.09 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.06 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.05 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.04 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.02 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.01 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.0 | |
| PLN02476 | 278 | O-methyltransferase | 97.98 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.91 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.89 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.89 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.88 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.88 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.88 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.87 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.85 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.8 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.79 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.77 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.77 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.75 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.73 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.73 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.71 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.69 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.67 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.59 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.59 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.55 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.54 | |
| PLN02823 | 336 | spermine synthase | 97.5 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.48 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.42 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.41 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.4 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.36 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.35 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.27 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.27 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.26 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.22 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.15 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.14 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.12 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.1 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.08 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.06 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.03 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.02 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.99 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.96 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.92 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.85 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.83 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.82 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.8 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.69 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.6 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.56 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.49 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.42 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.41 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.39 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.38 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.36 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.32 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.29 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.06 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.02 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.82 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.76 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.66 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.65 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.61 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.54 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.39 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.25 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.17 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 94.98 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 94.95 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 94.86 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 94.66 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.56 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.47 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 94.47 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.41 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 94.36 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.2 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 94.15 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.05 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 93.91 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 93.89 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.46 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.42 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.25 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 93.03 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 92.69 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 92.32 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 92.3 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 92.03 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.0 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 91.94 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 91.77 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 91.66 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.5 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 91.06 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 90.43 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 89.93 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.86 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.06 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 89.04 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 89.03 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 88.82 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 88.67 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 88.11 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 87.99 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 87.88 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 87.39 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 86.99 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 86.43 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 86.09 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 85.52 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 85.42 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 85.19 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 85.13 | |
| PF15361 | 152 | RIC3: Resistance to inhibitors of cholinesterase h | 85.12 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 84.46 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 84.33 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 83.83 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 83.77 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 83.33 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 82.93 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 82.45 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 82.43 | |
| PF14314 | 675 | Methyltrans_Mon: Virus-capping methyltransferase | 81.6 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 81.2 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 80.23 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=297.61 Aligned_cols=236 Identities=28% Similarity=0.443 Sum_probs=191.5
Q ss_pred CCCCcHH-HHH-------HHHHcCCCCC-CCCCccccCCCCCCCCccCCccCCCCCCCCcccccccccccccccccCCCC
Q 012235 206 YCKDDWN-LAQ-------KLMVNGCDPL-PRRRCLTRASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPK 276 (467)
Q Consensus 206 ~Cp~d~~-l~~-------~l~~~~C~pl-prr~C~~~ap~gY~~plp~P~s~~~~p~d~~~~W~~y~c~~~~cl~s~~~~ 276 (467)
+|-|... +.. ..++|||||. ++.+|++++|+||+.|+|||+| ++++|++|. ++++|++.+..
T Consensus 4 PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~S-------Rd~iW~~Nv--ph~~L~~~K~~ 74 (506)
T PF03141_consen 4 PCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKS-------RDYIWYANV--PHTKLAEEKAD 74 (506)
T ss_pred CCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcc-------cceeeeccc--CchHHhhhccc
Confidence 8999876 333 3578999994 5889999999999999999999 689999874 89999999999
Q ss_pred CCCCccCCchhhhcccccccccCCc-----ChHHHHHH---HhcC--CCCCCceEEEECCCccHHHHHHhhCCCEEEEEe
Q 012235 277 RGYSKCTGCFEMDKEKPKWVANRSV-----PVDFLISD---ILAI--KPGETRIGLDFGVGTGTFAARMREQNVTIVSTA 346 (467)
Q Consensus 277 ~~~~~C~~cfdm~~e~~~W~~~~~~-----~~d~~I~~---lL~l--~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvd 346 (467)
++| |..+++.|.++.++ +++.||++ ++.. ..+.+|++||+|||+|+|+++|.++++.+++++
T Consensus 75 qnW--------v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a 146 (506)
T PF03141_consen 75 QNW--------VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFA 146 (506)
T ss_pred ccc--------eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcc
Confidence 999 77888888886543 56667654 4554 557789999999999999999999999999988
Q ss_pred cCCCH-HHHHHHHHcCCccEEEc--cCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 347 LNLGA-PFNEMIALRGLIPLYVT--LNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 347 iDiS~-~~l~~a~~rg~i~~~~~--d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+..+. ..++.|.+||. +.+.+ ..++|||++++||+|||+.++..|....+ .+|.|++|+|||||+|+++.+...
T Consensus 147 ~~d~~~~qvqfaleRGv-pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 147 PNDEHEAQVQFALERGV-PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cccCCchhhhhhhhcCc-chhhhhhccccccCCccchhhhhcccccccchhccc--ceeehhhhhhccCceEEecCCccc
Confidence 86554 55777888994 44444 37899999999999999999999998864 699999999999999999887665
Q ss_pred -CC--CHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecCCCC
Q 012235 424 -KK--DLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPRA 466 (467)
Q Consensus 424 -~~--~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP~~~ 466 (467)
+. +.....+.++.+ .+.+||+...+..+ .+|||||..+
T Consensus 224 ~r~~~~~~~~~~~~~~l-~~~lCW~~va~~~~----~aIwqKp~~~ 264 (506)
T PF03141_consen 224 QRTDEDLEEEWNAMEDL-AKSLCWKKVAEKGD----TAIWQKPTNN 264 (506)
T ss_pred ccchHHHHHHHHHHHHH-HHHHHHHHheeeCC----EEEEeccCCc
Confidence 22 222333444444 58899998888777 9999999764
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=197.96 Aligned_cols=223 Identities=24% Similarity=0.335 Sum_probs=177.2
Q ss_pred ccCchhhhhhhcHHHHhhhhcCCCCCCCCCcHHHHHHHHHcCCCCCCCCCccccCCCC-----CCCCccCCccCCCCCCC
Q 012235 180 IHNTIGHACVLMKKELEEYMDYDIGSYCKDDWNLAQKLMVNGCDPLPRRRCLTRASKV-----YQKPFPINESLWKLPDG 254 (467)
Q Consensus 180 ~~~~~~~~c~~~~~~l~~~m~y~~~~~Cp~d~~l~~~l~~~~C~plprr~C~~~ap~g-----Y~~plp~P~s~~~~p~d 254 (467)
-++|+.|+|+..++ ..+....|..+.+....|+ .|.+.|+.+.|.. -..+.+||+++.+.|+.
T Consensus 258 wqKp~~~~Cy~~r~------~~~~pplC~~~~dpd~aWY------~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~r 325 (506)
T PF03141_consen 258 WQKPTNNSCYQKRK------PGKSPPLCDSSDDPDAAWY------VPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPR 325 (506)
T ss_pred EeccCCchhhhhcc------CCCCCCCCCCCCCCcchhh------cchhhhcCcCCcccccccccCCCCChhhhccCchh
Confidence 37999999999886 5788999996656677888 7788999999875 56789999999988875
Q ss_pred CcccccccccccccccccCCCCCCCCccCCchhhhcccccccccCCcChHHHHHH-HhcCCCCCCceEEEECCCccHHHH
Q 012235 255 RNVRWSNYQCRNFECLSSKNPKRGYSKCTGCFEMDKEKPKWVANRSVPVDFLISD-ILAIKPGETRIGLDFGVGTGTFAA 333 (467)
Q Consensus 255 ~~~~W~~y~c~~~~cl~s~~~~~~~~~C~~cfdm~~e~~~W~~~~~~~~d~~I~~-lL~l~~g~~r~VLDIGCGtG~~a~ 333 (467)
-... ...+ ... -++.++.+.|... ...|..- -+.+..+.+|+|+|+.+|.|+||+
T Consensus 326 l~~~-----------~~~g-~~~--------e~F~~Dt~~Wk~~----V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAA 381 (506)
T PF03141_consen 326 LSSG-----------SIPG-ISP--------EEFKEDTKHWKKR----VSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAA 381 (506)
T ss_pred hhcC-----------CcCC-CCH--------HHHHHHHHHHHHH----HHHHHHhhcccccccceeeeeeecccccHHHH
Confidence 2210 0001 111 1356888999883 3333211 134778889999999999999999
Q ss_pred HHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCc
Q 012235 334 RMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGG 413 (467)
Q Consensus 334 ~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG 413 (467)
+|.+..++|+.+.+...++.+..+.+||++..++.+++.+++++++||+||++..+.++.+.+.++.++.|++|+|||||
T Consensus 382 AL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G 461 (506)
T PF03141_consen 382 ALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGG 461 (506)
T ss_pred HhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCc
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHcCceeeEEEE
Q 012235 414 LLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 414 ~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
.+|| +++.+ ++..++.+ .+.++|.+
T Consensus 462 ~~ii------RD~~~-vl~~v~~i-~~~lrW~~ 486 (506)
T PF03141_consen 462 WVII------RDTVD-VLEKVKKI-AKSLRWEV 486 (506)
T ss_pred eEEE------eccHH-HHHHHHHH-HHhCcceE
Confidence 9999 65553 33333333 35555653
|
; GO: 0008168 methyltransferase activity |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-20 Score=181.98 Aligned_cols=170 Identities=19% Similarity=0.251 Sum_probs=127.3
Q ss_pred CCCCcHH-HHHHHHHcCCCCCCCCCccccCCCCCCCCccCCccCCCCCCCCcccccccccccccccccCCCCCCCCccCC
Q 012235 206 YCKDDWN-LAQKLMVNGCDPLPRRRCLTRASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTG 284 (467)
Q Consensus 206 ~Cp~d~~-l~~~l~~~~C~plprr~C~~~ap~gY~~plp~P~s~~~~p~d~~~~W~~y~c~~~~cl~s~~~~~~~~~C~~ 284 (467)
.||.|.. +........|+. +||||.+++||++++|-+.+....|+|..
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~---~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~---------------------------- 52 (272)
T PRK11088 4 QCPLCHQPLTLEENSWICPQ---NHQFDCAKEGYVNLLPVQHKRSKDPGDNK---------------------------- 52 (272)
T ss_pred cCCCCCcchhcCCCEEEcCC---CCCCccccCceEEeccccccCCCCCCcCH----------------------------
Confidence 5999987 655567789998 99999999999999986666544444332
Q ss_pred chhhhcccccccccCCcChHH--HHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCC-----CEEEEEecCCCHHHHHH
Q 012235 285 CFEMDKEKPKWVANRSVPVDF--LISDILA-IKPGETRIGLDFGVGTGTFAARMREQN-----VTIVSTALNLGAPFNEM 356 (467)
Q Consensus 285 cfdm~~e~~~W~~~~~~~~d~--~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g-----~~V~gvdiDiS~~~l~~ 356 (467)
.|.+.+++|+. .+++... .+.+.+. ..+....+|||+|||+|.++..+++.. ..++| +|+|+.+++.
T Consensus 53 --~~~~ar~~fl~-~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~g--iD~s~~~l~~ 127 (272)
T PRK11088 53 --EMMQARRAFLD-AGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFG--LDISKVAIKY 127 (272)
T ss_pred --HHHHHHHHHHH-CCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEE--ECCCHHHHHH
Confidence 36677777776 5554332 2222232 212222379999999999999988652 35666 8899999999
Q ss_pred HHHcC-CccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 357 IALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 357 a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
++++. .+.+.++|+..+|+++++||+|++.++. ..+.++.|+|||||+|++..+.
T Consensus 128 A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~----------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 128 AAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP----------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred HHHhCCCCeEEEeecccCCCcCCceeEEEEecCC----------CCHHHHHhhccCCCEEEEEeCC
Confidence 98764 4789999999999999999999987653 2468999999999999997653
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-17 Score=157.95 Aligned_cols=108 Identities=29% Similarity=0.409 Sum_probs=92.3
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHcCC------ccEEEccCCCCccCCCccc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALRGL------IPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~rg~------i~~~~~d~~~Lpf~d~sFD 381 (467)
.+...+|. +|||+|||||.++..+++.. .+|++ +|+|+.|++.++++.. +.++++|++.|||+|++||
T Consensus 46 ~~~~~~g~--~vLDva~GTGd~a~~~~k~~g~g~v~~--~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 46 LLGIKPGD--KVLDVACGTGDMALLLAKSVGTGEVVG--LDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred hhCCCCCC--EEEEecCCccHHHHHHHHhcCCceEEE--EECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccC
Confidence 33444666 99999999999999999884 55666 8999999999987631 7799999999999999999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+|.+++.+.++.+. +.+|+|++|||||||.+++.++..+.
T Consensus 122 ~vt~~fglrnv~d~---~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 122 AVTISFGLRNVTDI---DKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred EEEeeehhhcCCCH---HHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99999999666655 79999999999999999998876654
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=156.47 Aligned_cols=112 Identities=24% Similarity=0.390 Sum_probs=82.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~Lpf~d 377 (467)
+.+.+...++. +|||+|||||.++..++++ + ..|++ +|+|+.|++.++++ ..+.++++|++++|+++
T Consensus 39 ~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~--vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 39 LIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVG--VDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp HHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEE--EES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEE--ecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 33445666666 9999999999999999876 3 46777 88999999998764 24889999999999999
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK 425 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~ 425 (467)
++||+|++.+++.++.+. ..++.|+.|+|||||.+++.++..+..
T Consensus 115 ~sfD~v~~~fglrn~~d~---~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDR---ERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp T-EEEEEEES-GGG-SSH---HHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred CceeEEEHHhhHHhhCCH---HHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 999999999999666655 689999999999999999999887764
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.7e-16 Score=126.05 Aligned_cols=91 Identities=27% Similarity=0.474 Sum_probs=77.5
Q ss_pred EEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCC---ccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 322 LDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGL---IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 322 LDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~---i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
||+|||+|.++..++++ +..+++ +|+++++++.++++.. +.+.+++...+|+++++||+|++..+++|+ ++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~--~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~-- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTG--IDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-ED-- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEE--EES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SH--
T ss_pred CEecCcCCHHHHHHHhccCCEEEE--EeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cC--
Confidence 89999999999999999 899999 7788899998887643 559999999999999999999999999666 33
Q ss_pred HHHHHHHHHhccCCCcEEEE
Q 012235 398 LDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI 417 (467)
...+++|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 47999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-15 Score=146.65 Aligned_cols=131 Identities=21% Similarity=0.189 Sum_probs=104.4
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHcC---------CccEEEccCCCCccC
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALRG---------LIPLYVTLNQRLPFF 376 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~rg---------~i~~~~~d~~~Lpf~ 376 (467)
+.+.+.++. +|||+|||+|.++..++++ + ..|+| +|+|+.|++.++++. .+.++++|++.+|++
T Consensus 67 ~~~~~~~~~--~VLDlGcGtG~~~~~la~~~~~~~~V~g--vD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~ 142 (261)
T PLN02233 67 SWSGAKMGD--RVLDLCCGSGDLAFLLSEKVGSDGKVMG--LDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD 142 (261)
T ss_pred HHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC
Confidence 344555665 8999999999999999876 3 47777 889999999886541 367899999999999
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------------------------
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------------------- 425 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------------------- 425 (467)
+++||+|+++++++|+.+. ..++.|+.|+|||||.+++.++..+..
T Consensus 143 ~~sfD~V~~~~~l~~~~d~---~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDR---LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL 219 (261)
T ss_pred CCCEeEEEEecccccCCCH---HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH
Confidence 9999999999999666554 689999999999999999987654321
Q ss_pred --------CHHHHHHHHHHcCceeeEEEE
Q 012235 426 --------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 426 --------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+.+++.+++++.||+.+++..
T Consensus 220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 220 KSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 234667788888998876543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-14 Score=140.40 Aligned_cols=136 Identities=16% Similarity=0.199 Sum_probs=107.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sF 380 (467)
.+...+.+.++. +|||||||+|..+..+++. +.+|++ +|+++.+++.+.++ ..+.+..+|+...|+++++|
T Consensus 43 ~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~g--iD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 43 KILSDIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHG--VDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEE--EECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 344555666666 8999999999999999765 678888 77889998888764 24778889988889989999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------CCHHHHHHHHHHcCcee
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------KDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------~~~~~~~~~i~~~Gf~~ 441 (467)
|+|++..++.|+... ....+++++.++|||||.|++.++.... .....+.++++..||..
T Consensus 119 D~V~s~~~l~h~~~~-d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 197 (263)
T PTZ00098 119 DMIYSRDAILHLSYA-DKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQN 197 (263)
T ss_pred EEEEEhhhHHhCCHH-HHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCe
Confidence 999999888676532 2578999999999999999998764322 12357888899999988
Q ss_pred eEEEE
Q 012235 442 HKWAI 446 (467)
Q Consensus 442 l~W~~ 446 (467)
+.+.-
T Consensus 198 v~~~d 202 (263)
T PTZ00098 198 VVAKD 202 (263)
T ss_pred eeEEe
Confidence 87753
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=145.95 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=99.2
Q ss_pred ceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
.+|||||||+|.++..++++ +..|+| +|+++.+++.+.++ + .+.++++|+..+|+++++||+|++..+++
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~g~~v~g--vD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKYGANVKG--ITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 38999999999999999986 788998 67788887766542 3 37899999999999999999999999998
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccC----C------------------------CCHHHHHHHHHHcCceee
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN----K------------------------KDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~----~------------------------~~~~~~~~~i~~~Gf~~l 442 (467)
|+.+. ..++.++.|+|||||.|++.++... . ...+++.+++++.||..+
T Consensus 198 h~~d~---~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v 274 (340)
T PLN02244 198 HMPDK---RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDI 274 (340)
T ss_pred ccCCH---HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCee
Confidence 88765 5899999999999999999765321 0 023477788888999877
Q ss_pred EEE
Q 012235 443 KWA 445 (467)
Q Consensus 443 ~W~ 445 (467)
...
T Consensus 275 ~~~ 277 (340)
T PLN02244 275 KTE 277 (340)
T ss_pred Eee
Confidence 654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-14 Score=142.43 Aligned_cols=120 Identities=11% Similarity=0.113 Sum_probs=100.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||||||+|.++..+++.|.+|+| +|.++.+++.++.+ + .+.+++++++.+++.+++||+|++..+++|+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~~V~G--ID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGATVTG--VDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence 8999999999999999998999998 78889998888643 1 3778899999999888999999999999888
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccC-------------------C--------CCHHHHHHHHHHcCceeeEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------------K--------KDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------------~--------~~~~~~~~~i~~~Gf~~l~W 444 (467)
.+. ..++.++.++|||||.+++.++... . -..+++.+++++.||+....
T Consensus 212 ~d~---~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 212 ANP---AEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 877 5899999999999999999864321 0 13468889999999866544
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=136.70 Aligned_cols=99 Identities=23% Similarity=0.335 Sum_probs=87.0
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
.+|||+|||+|.++..+++.+..+++ +|+++.|++.+.++.. ..++++|++.+|+++++||+|+++.++ ||.++
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~~--~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l-~~~~d-- 118 (251)
T PRK10258 44 THVLDAGCGPGWMSRYWRERGSQVTA--LDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV-QWCGN-- 118 (251)
T ss_pred CeEEEeeCCCCHHHHHHHHcCCeEEE--EECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh-hhcCC--
Confidence 38999999999999999988988988 7788999999887753 578899999999999999999999999 77655
Q ss_pred HHHHHHHHHhccCCCcEEEEEeccc
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
...++.++.|+|||||.++++++..
T Consensus 119 ~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 119 LSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 4789999999999999999987653
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=124.20 Aligned_cols=127 Identities=24% Similarity=0.378 Sum_probs=95.0
Q ss_pred HHHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceE
Q 012235 305 FLISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 305 ~~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
..+..+.+ ..++. +|||||||+|.++..+++.+.++++ +|+++.+++. ........+....+.++++||+|
T Consensus 11 ~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~g--~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i 82 (161)
T PF13489_consen 11 DLLERLLPRLKPGK--RVLDIGCGTGSFLRALAKRGFEVTG--VDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLI 82 (161)
T ss_dssp HHHHHHHTCTTTTS--EEEEESSTTSHHHHHHHHTTSEEEE--EESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEE
T ss_pred HHHHHHhcccCCCC--EEEEEcCCCCHHHHHHHHhCCEEEE--EECCHHHHhh----hhhhhhhhhhhhhhccccchhhH
Confidence 34555664 44444 8999999999999999999999998 6777777766 22333333334555678999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceee
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l 442 (467)
+|+.+++|+.+. ..++.++.++|||||++++.++..... +.+.+..++++.||+.+
T Consensus 83 ~~~~~l~~~~d~---~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 83 ICNDVLEHLPDP---EEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp EEESSGGGSSHH---HHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred hhHHHHhhcccH---HHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 999999777654 799999999999999999988764210 23467777777777655
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=135.79 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=97.7
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCc-cCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLP-FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lp-f~d~sFDlVis~~~L~ 390 (467)
.+|||+|||+|.++..+++.+..|++ +|+++.|++.++++ + .+.++++++..++ +.+++||+|++..+++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~~v~~--vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~ 123 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGHQVIL--CDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLE 123 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHH
Confidence 38999999999999999999999998 78888998887653 2 3678888887764 5678999999999996
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccC-------------------------------CCCHHHHHHHHHHcCc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------------------------KKDLDDYMYMFLQFRY 439 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------------------------~~~~~~~~~~i~~~Gf 439 (467)
|+.++ ..++.++.++|||||.+++..+... .-..+++.++++..||
T Consensus 124 ~~~~~---~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf 200 (255)
T PRK11036 124 WVADP---KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGW 200 (255)
T ss_pred hhCCH---HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCC
Confidence 66555 5899999999999999987643211 0124578889999999
Q ss_pred eeeEEE
Q 012235 440 KKHKWA 445 (467)
Q Consensus 440 ~~l~W~ 445 (467)
+.+.+.
T Consensus 201 ~~~~~~ 206 (255)
T PRK11036 201 QIMGKT 206 (255)
T ss_pred eEeeee
Confidence 887654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=134.22 Aligned_cols=129 Identities=13% Similarity=0.169 Sum_probs=99.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEec
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
+.+...++. +|||+|||+|.++..++++ +.+|+| +|+++.|++.+++++ +.++++|++.++ ++++||+|+++
T Consensus 23 ~~l~~~~~~--~vLDlGcG~G~~~~~l~~~~p~~~v~g--vD~s~~~~~~a~~~~-~~~~~~d~~~~~-~~~~fD~v~~~ 96 (255)
T PRK14103 23 ARVGAERAR--RVVDLGCGPGNLTRYLARRWPGAVIEA--LDSSPEMVAAARERG-VDARTGDVRDWK-PKPDTDVVVSN 96 (255)
T ss_pred HhCCCCCCC--EEEEEcCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHhcC-CcEEEcChhhCC-CCCCceEEEEe
Confidence 344444554 8999999999999999987 567887 788899999988765 789999988875 56899999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccC-------------------------------CCCHHHHHHHHH
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------------------------KKDLDDYMYMFL 435 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------------------------~~~~~~~~~~i~ 435 (467)
.+++|+.+. ..++.++.++|||||.+++..+... -...+.+.++++
T Consensus 97 ~~l~~~~d~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 97 AALQWVPEH---ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred hhhhhCCCH---HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 999544433 6899999999999999988532100 012457888888
Q ss_pred HcCceeeEEEE
Q 012235 436 QFRYKKHKWAI 446 (467)
Q Consensus 436 ~~Gf~~l~W~~ 446 (467)
..||....|..
T Consensus 174 ~aGf~v~~~~~ 184 (255)
T PRK14103 174 DAGCKVDAWET 184 (255)
T ss_pred hCCCeEEEEee
Confidence 99997666654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.4e-13 Score=129.26 Aligned_cols=134 Identities=19% Similarity=0.243 Sum_probs=102.2
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~ 378 (467)
.+.+.+.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.++++ + .+.++.+|...++++++
T Consensus 38 l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 38 MKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIG--LDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3445566665 8999999999999999876 357777 77788888777643 2 36788899988888889
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------------
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--------------------------------- 425 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------------------- 425 (467)
+||+|++..++++..+. ..++.++.++|+|||.+++.+...+..
T Consensus 114 ~fD~V~~~~~l~~~~~~---~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY---MQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ 190 (231)
T ss_pred CccEEEEecccccCCCH---HHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH
Confidence 99999999999555444 589999999999999999876543211
Q ss_pred -------CHHHHHHHHHHcCceeeEEEEcc
Q 012235 426 -------DLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 426 -------~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
+.+++.+++++.||+.+....-.
T Consensus 191 ~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 191 ESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 12456788999999888665443
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=128.96 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=86.5
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cCC--ccEEEccCCCCccCCC
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RGL--IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg~--i~~~~~d~~~Lpf~d~ 378 (467)
..+.+.+...++. +|||+|||+|.++..|+++|.+|++ +|+|+.+++.+++ .+. +.+.++|...+++ ++
T Consensus 20 ~~l~~~l~~~~~~--~vLDiGcG~G~~a~~La~~g~~V~g--vD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~ 94 (197)
T PRK11207 20 SEVLEAVKVVKPG--KTLDLGCGNGRNSLYLAANGFDVTA--WDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DG 94 (197)
T ss_pred HHHHHhcccCCCC--cEEEECCCCCHHHHHHHHCCCEEEE--EeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CC
Confidence 3455566655554 8999999999999999999999999 7788888877653 232 6677888877776 46
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+||+|+++.++ |+.+......++.++.++|||||++++..+
T Consensus 95 ~fD~I~~~~~~-~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 95 EYDFILSTVVL-MFLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred CcCEEEEecch-hhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 79999999998 555555578999999999999999766443
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=137.51 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=97.6
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH-------cCCccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL-------RGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~-------rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||||||+|.++..+++.|. .|+| +|.++.++..+.. ...+.++.++++.+|+ +++||+|+|..+++|
T Consensus 125 ~VLDIGCG~G~~~~~la~~g~~~V~G--iD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 125 TVLDVGCGNGYHMWRMLGAGAKLVVG--IDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred EEEEeccCCcHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 899999999999999999875 4777 7777877654321 1237788899999998 889999999999988
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceeeEEEEcc
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
..+. ..++.++.++|+|||.+++.++....+ ....+.+++++.||+.++.....
T Consensus 202 ~~dp---~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 202 RRSP---LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred cCCH---HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 7665 589999999999999999876532211 23478899999999988776443
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=134.14 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=101.5
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc---CCccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR---GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r---g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
+|||+|||+|.++..+++. +.++++ +|.++.|++.++++ ..+.++.+|.+.+++++++||+|+++.+++|+.+
T Consensus 116 ~VLDLGcGtG~~~l~La~~~~~~~Vtg--VD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d 193 (340)
T PLN02490 116 KVVDVGGGTGFTTLGIVKHVDAKNVTI--LDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
T ss_pred EEEEEecCCcHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC
Confidence 8999999999999888875 467777 77788998888764 2478899999999998999999999999977776
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccC--------------CCCHHHHHHHHHHcCceeeEEEEcc
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCN--------------KKDLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~--------------~~~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
. +.+++++.|+|||||.+++.....+ ....+++.+++++.||+.+.+....
T Consensus 194 ~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 194 P---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred H---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 6 5799999999999999988653221 1134588999999999998886543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.3e-13 Score=141.45 Aligned_cols=129 Identities=22% Similarity=0.317 Sum_probs=102.8
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC-----CccEEEccCCCCccCCCccceE
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG-----LIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
.+.+.++. +|||||||+|.++..+++. +..|+| +|+|+.+++.+.++. .+.+.++|...+++++++||+|
T Consensus 261 ~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~g--vDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 261 KLDLKPGQ--KVLDVGCGIGGGDFYMAENFDVHVVG--IDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred hcCCCCCC--EEEEEeccCCHHHHHHHHhcCCEEEE--EECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEE
Confidence 34444454 8999999999999999876 778888 777888888876541 3678899998888888999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------CHHHHHHHHHHcCceeeEEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+|..++.|+.+. ..++.++.|+|||||.+++.++..... ..+.+.+++++.||..+.+.
T Consensus 337 ~s~~~l~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 337 YSRDTILHIQDK---PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred EECCcccccCCH---HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 999999888766 689999999999999999987643221 23467888888999877553
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.9e-13 Score=129.32 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=88.9
Q ss_pred CCCCceEEEECCCccHHHHHHhhC--------CCEEEEEecCCCHHHHHHHHHcC---------CccEEEccCCCCccCC
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQ--------NVTIVSTALNLGAPFNEMIALRG---------LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~--------g~~V~gvdiDiS~~~l~~a~~rg---------~i~~~~~d~~~Lpf~d 377 (467)
++...++||++||||..|..+.+. +.+|+. .|++++|+..+++|. .+.|+.+|+++|||++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v--~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTV--LDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEE--EeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 333348999999999999999876 245776 889999998886652 1678899999999999
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
++||+.+..+.+..|.+. +++++|++|||||||+|.+.+|....
T Consensus 176 ~s~D~yTiafGIRN~th~---~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTHI---QKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred CcceeEEEecceecCCCH---HHHHHHHHHhcCCCcEEEEEEccccc
Confidence 999999999999888887 68999999999999999998876544
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.4e-13 Score=134.09 Aligned_cols=130 Identities=15% Similarity=0.090 Sum_probs=98.5
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHH---H----cCCccEEEccCCCCccCCCccceE
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIA---L----RGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~---~----rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
...++. +|||||||+|.++..++..|. .|+| +|.|+.|+.++. . ...+.+...+++.+|.. .+||+|
T Consensus 118 ~~~~g~--~VLDvGCG~G~~~~~~~~~g~~~v~G--iDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 118 SPLKGR--TILDVGCGSGYHMWRMLGHGAKSLVG--IDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred CCCCCC--EEEEeccCCcHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEE
Confidence 334444 899999999999999998875 5777 778887776532 1 12356777788888764 589999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceee
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l 442 (467)
+|+.+++|+.+. ..++.+++|+|||||.|++.++....+ ....+..++++.||+.+
T Consensus 193 ~s~gvL~H~~dp---~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V 269 (314)
T TIGR00452 193 FSMGVLYHRKSP---LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENF 269 (314)
T ss_pred EEcchhhccCCH---HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEE
Confidence 999999888766 589999999999999999876533211 23467788999999999
Q ss_pred EEEEccC
Q 012235 443 KWAISPK 449 (467)
Q Consensus 443 ~W~~~~k 449 (467)
+......
T Consensus 270 ~i~~~~~ 276 (314)
T TIGR00452 270 RILDVLK 276 (314)
T ss_pred EEEeccC
Confidence 8765444
|
Known examples to date are restricted to the proteobacteria. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-13 Score=114.49 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=78.2
Q ss_pred eEEEECCCccHHHHHHhh--CCCEEEEEecCCCHHHHHHHHHc-------CCccEEEccC-CCCccCCCccceEEecc-c
Q 012235 320 IGLDFGVGTGTFAARMRE--QNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLN-QRLPFFDNTMDLIHTTG-F 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~--~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~-~~Lpf~d~sFDlVis~~-~ 388 (467)
+|||+|||+|.++..+++ .+.+|++ +|+++.+++.++++ ..+.++++|+ ..... .+.||+|++.. +
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVG--VDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEE--EESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 899999999999999999 6899999 77788888887654 2488999998 33333 45699999999 5
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.++......+.+++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5444443456789999999999999999865
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=128.41 Aligned_cols=129 Identities=19% Similarity=0.297 Sum_probs=100.1
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccc
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFD 381 (467)
..+.++. +|||+|||+|..+..+++. + ..|++ +|+++.+++.++++ + .+.++.++.+.+++++++||
T Consensus 73 ~~~~~g~--~VLDiG~G~G~~~~~~a~~~g~~~~v~g--vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 73 AELKPGE--TVLDLGSGGGFDCFLAARRVGPTGKVIG--VDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred ccCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEE--ECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCcee
Confidence 3466676 9999999999887766654 3 35777 88888998888753 2 36788899999998889999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC--------------------CHHHHHHHHHHcCcee
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--------------------DLDDYMYMFLQFRYKK 441 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------~~~~~~~~i~~~Gf~~ 441 (467)
+|+++.+++|+.+. ..++.++.|+|||||.|++.++....+ ..+++.++++..||..
T Consensus 149 ~Vi~~~v~~~~~d~---~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 149 VIISNCVINLSPDK---ERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred EEEEcCcccCCCCH---HHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence 99999999555444 589999999999999999976543221 3347888999999987
Q ss_pred eEEEE
Q 012235 442 HKWAI 446 (467)
Q Consensus 442 l~W~~ 446 (467)
+....
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 76543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-13 Score=131.67 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=86.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
+|||+|||-|.++..||+.|..|+| +|+++.+++.++.. +. +++.+...+++....++||+|+|..+++|..+
T Consensus 62 ~vLDvGCGgG~Lse~mAr~Ga~Vtg--iD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~d 139 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLGASVTG--IDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPD 139 (243)
T ss_pred eEEEecCCccHhhHHHHHCCCeeEE--ecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCC
Confidence 8999999999999999999999999 88889998888743 22 55777788888776689999999999999999
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+ +.+++.+.+.+||||.+++++....
T Consensus 140 p---~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 140 P---ESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred H---HHHHHHHHHHcCCCcEEEEeccccC
Confidence 8 5799999999999999999887643
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=123.87 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=93.3
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sF 380 (467)
.+.+.+...++. +|||+|||+|.++..++++|.+|++ +|+++.|++.++++ +. +.+.+.+....++ +++|
T Consensus 21 ~l~~~~~~~~~~--~vLDiGcG~G~~a~~la~~g~~V~~--iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~f 95 (195)
T TIGR00477 21 AVREAVKTVAPC--KTLDLGCGQGRNSLYLSLAGYDVRA--WDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDY 95 (195)
T ss_pred HHHHHhccCCCC--cEEEeCCCCCHHHHHHHHCCCeEEE--EECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCC
Confidence 344455544444 8999999999999999999999999 67778888766432 32 5566677666665 4689
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-----------CCHHHHHHHHHHcCceeeEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-----------KDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-----------~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
|+|+++.+++ +.+......++.++.|+|||||++++..+.... -..+++.+.+. +|..+.|.
T Consensus 96 D~I~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 96 DFIFSTVVFM-FLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CEEEEecccc-cCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 9999999994 444444678999999999999997665432211 12335555554 46777776
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-12 Score=118.83 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=107.7
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccceEEecc
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
.+..+.++++||+|||.|.++..|+.+.-.+++ +|+++.+++.+++|- .+.+.+++.... .++++||+|+.+.
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~Lla--vDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLA--VDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE 114 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEE--EES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEE--EeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh
Confidence 355556779999999999999999999877888 888899999998762 388899987665 4689999999999
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEeccc-------CCCCHHHHHHHHHHcCceeeEEEEcc-CCCCceEEEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC-------NKKDLDDYMYMFLQFRYKKHKWAISP-KSKDEVYLSAL 459 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~-------~~~~~~~~~~~i~~~Gf~~l~W~~~~-k~~devyl~av 459 (467)
+++.+.+.+.+..++..+...|+|||.+++.++.. +.-..+.+.+++.+. +..+.-.... ...+|-.+.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-SSTTSEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEcCCCCCCceEeee
Confidence 99666555668899999999999999999987632 122345778888776 5665444333 35567788889
Q ss_pred eecCCCC
Q 012235 460 LEKPPRA 466 (467)
Q Consensus 460 lqKP~~~ 466 (467)
++||++.
T Consensus 194 ~~~~~~~ 200 (201)
T PF05401_consen 194 FRNPVSA 200 (201)
T ss_dssp EE--SSS
T ss_pred ecCCcCC
Confidence 9999874
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=128.25 Aligned_cols=132 Identities=20% Similarity=0.266 Sum_probs=90.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH----cCC---ccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL----RGL---IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~----rg~---i~~~~~d~~~Lpf~d~ 378 (467)
+.+.+.+++|. +|||||||.|.++..++++ |++|+| +.+|+...+.+.+ +|+ +.+...|..+++.
T Consensus 54 ~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~g--itlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--- 126 (273)
T PF02353_consen 54 LCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTG--ITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--- 126 (273)
T ss_dssp HHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEE--EES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---
Confidence 34456788888 9999999999999999999 999999 6667776666543 443 6778888776643
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------------CHHHHHHHH
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------------DLDDYMYMF 434 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------------~~~~~~~~i 434 (467)
+||.|+|..+++|+... ..+.+++++.++|||||.+++..+..... ....+...+
T Consensus 127 ~fD~IvSi~~~Ehvg~~-~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRK-NYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp S-SEEEEESEGGGTCGG-GHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CCCEEEEEechhhcChh-HHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 99999999999998643 36789999999999999999865443221 233566667
Q ss_pred HHcCceeeEEEE
Q 012235 435 LQFRYKKHKWAI 446 (467)
Q Consensus 435 ~~~Gf~~l~W~~ 446 (467)
+..||+...|..
T Consensus 206 ~~~~l~v~~~~~ 217 (273)
T PF02353_consen 206 EDAGLEVEDVEN 217 (273)
T ss_dssp HHTT-EEEEEEE
T ss_pred hcCCEEEEEEEE
Confidence 778888777754
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-12 Score=126.42 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=81.1
Q ss_pred eEEEECCCccHHHHHHhh----CCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMRE----QNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~----~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
+|||+|||+|..+..+++ .+.++++ +|+|+.|++.++++ + .+.++++++..+|++ .+|+|+++.+
T Consensus 59 ~vLDlGcGtG~~~~~l~~~~~~~~~~v~g--vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 59 QVYDLGCSLGAATLSVRRNIHHDNCKIIA--IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred EEEEEcccCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 899999999999988876 2567888 88899999888654 1 378889998888764 4999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
++| .++.....++.++.++|||||.|++.+.+...
T Consensus 135 l~~-l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~ 169 (247)
T PRK15451 135 LQF-LEPSERQALLDKIYQGLNPGGALVLSEKFSFE 169 (247)
T ss_pred HHh-CCHHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 944 44444578999999999999999998855433
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.1e-12 Score=125.40 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=88.9
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cCC-ccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
+|||+|||+|.++..+++.|.+|++ +|.++.+++.+++ .+. +.+...|....++ +++||+|+++.++ |+.+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~a--vD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl-~~l~ 198 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTA--VDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVL-MFLN 198 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEE--EECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchh-hhCC
Confidence 7999999999999999999999999 7777888776643 233 5666777766555 7889999999999 5555
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccCC-----------CCHHHHHHHHHHcCceeeEEE
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCNK-----------KDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-----------~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
......++.++.++|+|||++++....... -...++.+.+.. |+.+.+.
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 555789999999999999997764332211 122356665554 6777664
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-12 Score=111.00 Aligned_cols=90 Identities=27% Similarity=0.454 Sum_probs=74.1
Q ss_pred EEEECCCccHHHHHHhhCC-----CEEEEEecCCCHHHHHHHHHcC-----CccEEEccCCCCccCCCccceEEeccc-c
Q 012235 321 GLDFGVGTGTFAARMREQN-----VTIVSTALNLGAPFNEMIALRG-----LIPLYVTLNQRLPFFDNTMDLIHTTGF-M 389 (467)
Q Consensus 321 VLDIGCGtG~~a~~La~~g-----~~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~d~~~Lpf~d~sFDlVis~~~-L 389 (467)
|||+|||+|..+..+++.. ..+++ +|+++.|++.++++. .+.++++|+.++++.+++||+|++... +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~g--vD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIG--VDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEE--EES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEE--EECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999998773 67777 888899999988754 378999999999998999999999655 7
Q ss_pred ccccchhhHHHHHHHHHhccCCCc
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGG 413 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG 413 (467)
.| .++...+.+++++.++|||||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 55 555567899999999999998
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-12 Score=124.72 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=76.4
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhH
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLL 398 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l 398 (467)
+|||+|||||.++..+++. +..|+| +|+|+.|++.++++. .+++++++.+|+++++||+|+++++++|+.+.
T Consensus 54 ~VLDlGcGtG~~~~~l~~~~~~~v~g--vD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~--- 126 (226)
T PRK05785 54 KVLDVAAGKGELSYHFKKVFKYYVVA--LDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHASDNI--- 126 (226)
T ss_pred eEEEEcCCCCHHHHHHHHhcCCEEEE--ECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhccCCH---
Confidence 8999999999999999988 678888 889999999988764 56789999999999999999999999665554
Q ss_pred HHHHHHHHhccCCC
Q 012235 399 DFILFDWDRILRPG 412 (467)
Q Consensus 399 ~~~L~el~RvLKPG 412 (467)
+.++.|+.|+|||.
T Consensus 127 ~~~l~e~~RvLkp~ 140 (226)
T PRK05785 127 EKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHhcCc
Confidence 68999999999994
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=115.79 Aligned_cols=106 Identities=27% Similarity=0.384 Sum_probs=83.7
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~s 379 (467)
.+...++. +|||+|||+|.++..+++.+ .++++ +|+++.+++.+.++ ..+.++.+|...+++.+++
T Consensus 46 ~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 121 (239)
T PRK00216 46 WLGVRPGD--KVLDLACGTGDLAIALAKAVGKTGEVVG--LDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNS 121 (239)
T ss_pred HhCCCCCC--eEEEeCCCCCHHHHHHHHHcCCCCeEEE--EeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCC
Confidence 34444444 89999999999999998875 67777 67777777777653 2367888898888887889
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
||+|+++.+++++.+. ..++.++.++|+|||.+++.++..
T Consensus 122 ~D~I~~~~~l~~~~~~---~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 122 FDAVTIAFGLRNVPDI---DKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccEEEEecccccCCCH---HHHHHHHHHhccCCcEEEEEEecC
Confidence 9999999999655554 689999999999999998876533
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-12 Score=122.15 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=80.9
Q ss_pred eEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
+|||+|||+|.++..++++ +.++++ +|+++.|++.++++ + .+.++++|+..++++ .+|+|+++++
T Consensus 56 ~iLDlGcG~G~~~~~l~~~~~~p~~~v~g--vD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 56 NVYDLGCSRGAATLSARRNINQPNVKIIG--IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred EEEEecCCCCHHHHHHHHhcCCCCCeEEE--EeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 8999999999999988874 567888 77889999888653 1 367889999888764 4899999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+ |+.++.....++.++.|+|||||.+++.+....
T Consensus 132 l-~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 132 L-QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred h-hhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 9 554444467899999999999999999876553
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=119.24 Aligned_cols=121 Identities=20% Similarity=0.275 Sum_probs=95.1
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+|||||||+|.++..+++. +.++++ +|+++.+++.+.++ + .+.++..|....|+ +++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~g--id~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHG--YTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHHHHH
Confidence 6999999999999999887 467887 66788887777653 2 36788888866666 45899999999997
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------CCHHHHHHHHHHcCceeeEEEE
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
|+.+. ..++.++.++|||||.+++.++.... .....+.+.+++.||..+....
T Consensus 79 ~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 79 HIKDK---MDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred hCCCH---HHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 77654 68999999999999999998764211 1234788899999998887653
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-12 Score=114.74 Aligned_cols=96 Identities=26% Similarity=0.422 Sum_probs=80.8
Q ss_pred eEEEECCCccHHHHHHhh-C--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc--cCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMRE-Q--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP--FFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~-~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp--f~d~sFDlVis~~~ 388 (467)
+|||+|||+|.++..+++ . +.+++| +|+++.|++.+.++ + .+.++++|+.+++ ++ +.||+|++..+
T Consensus 6 ~iLDlGcG~G~~~~~l~~~~~~~~~i~g--vD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 6 KILDLGCGTGRLLIQLAKELNPGAKIIG--VDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTTSEEEE--EESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred EEEEecCcCcHHHHHHHHhcCCCCEEEE--EECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 899999999999999994 3 678888 88889999888763 2 3789999999887 55 89999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
++|+.+. ..++.++.++|++||.+++.++.
T Consensus 83 l~~~~~~---~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHFPDP---EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGGTSHH---HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhccCH---HHHHHHHHHHcCCCcEEEEEECC
Confidence 9555544 58999999999999999998876
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=116.08 Aligned_cols=105 Identities=24% Similarity=0.375 Sum_probs=86.0
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sF 380 (467)
..+.+.++. +|||+|||+|.++..+++.. ..+++ +|+++.+++.+.++ ..+.+..+|...+++.+++|
T Consensus 13 ~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~--~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 13 ELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVG--IDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEE--EeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 445566655 89999999999999998762 46777 77778888877665 23678888988888888999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+|++..++.|+.+. ..++.++.++|||||.+++.++
T Consensus 89 D~v~~~~~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 89 DAVRSDRVLQHLEDP---ARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred eEEEEechhhccCCH---HHHHHHHHHHhcCCcEEEEEec
Confidence 999999999777665 6899999999999999998764
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.8e-12 Score=122.80 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=83.2
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEe
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
..+.+.++. +|||||||+|.++..+++. +..|++ +|+++.|++.+.++. .+.++.+|+..+. ++++||+|++
T Consensus 25 ~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~v~g--vD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 99 (258)
T PRK01683 25 ARVPLENPR--YVVDLGCGPGNSTELLVERWPAARITG--IDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFA 99 (258)
T ss_pred hhCCCcCCC--EEEEEcccCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEE
Confidence 334445554 8999999999999999986 567888 778899999887764 3778889987765 4579999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.++ ||..+ ...++.++.++|||||.+++..
T Consensus 100 ~~~l-~~~~d--~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 100 NASL-QWLPD--HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccCh-hhCCC--HHHHHHHHHHhcCCCcEEEEEC
Confidence 9999 55544 3689999999999999998864
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=117.71 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=80.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH----HcCC-ccEEEccCCCCccCCCccc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA----LRGL-IPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~----~rg~-i~~~~~d~~~Lpf~d~sFD 381 (467)
+.+.++..++. ++||+|||.|..+..|+++|..|++ +|.|+.+++.+. +++. +...+.|.....+ ++.||
T Consensus 22 v~~a~~~~~~g--~~LDlgcG~GRNalyLA~~G~~VtA--vD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~-~~~yD 96 (192)
T PF03848_consen 22 VLEAVPLLKPG--KALDLGCGEGRNALYLASQGFDVTA--VDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF-PEEYD 96 (192)
T ss_dssp HHHHCTTS-SS--EEEEES-TTSHHHHHHHHTT-EEEE--EESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--TTTEE
T ss_pred HHHHHhhcCCC--cEEEcCCCCcHHHHHHHHCCCeEEE--EECCHHHHHHHHHHHhhcCceeEEEEecchhccc-cCCcC
Confidence 44445544444 8999999999999999999999999 666666655443 3443 6777888888776 47899
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+|++..++ ++.+.+....++..+...++|||++++.++..
T Consensus 97 ~I~st~v~-~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 97 FIVSTVVF-MFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp EEEEESSG-GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred EEEEEEEe-ccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 99999888 55556567899999999999999999876544
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=115.76 Aligned_cols=99 Identities=24% Similarity=0.336 Sum_probs=82.1
Q ss_pred ceEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.+|||+|||+|.++..+++.+. .+++ +|+++.+++.+..+. .+.++.+|...+++++++||+|++..+++|..+
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~--~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIA--LDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEE--EeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 4899999999999999998854 4566 777888888777653 377889999999988999999999999944434
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
. ..++.++.++|+|||.+++..+..
T Consensus 114 ~---~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 114 L---SQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred H---HHHHHHHHHHcCCCcEEEEEeCCc
Confidence 3 689999999999999999976543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=117.21 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=109.3
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEcc-CCCCccCCCccceEEe
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTL-NQRLPFFDNTMDLIHT 385 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d-~~~Lpf~d~sFDlVis 385 (467)
.+++++..+..+-|||||||+|.-+..|.+.|+..+| +|+|+.|++.+.++.. -.++.+| .+.+||.+++||.|++
T Consensus 41 LELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiG--vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 41 LELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIG--VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred HHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEe--ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEE
Confidence 4566666644558999999999999999999999999 8999999999987543 2566665 5789999999999999
Q ss_pred cccccccc---------chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc---eeeEEEEccC
Q 012235 386 TGFMDGWL---------DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY---KKHKWAISPK 449 (467)
Q Consensus 386 ~~~L~h~~---------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf---~~l~W~~~~k 449 (467)
..++ +|. +...+..++..++.+|++|+..++.-+..+.++.+.+.....+.|| -.+.|-...|
T Consensus 119 ISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k 193 (270)
T KOG1541|consen 119 ISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTK 193 (270)
T ss_pred eeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccc
Confidence 9888 664 2233456788899999999999998777777777767777777888 4567754444
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=116.38 Aligned_cols=97 Identities=19% Similarity=0.112 Sum_probs=82.1
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
+|||+|||+|.++..|++. +..++| +|+++.|++.++++. .+.+.++++.. |+++++||+|+++.+++|+. +.
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~~~~~v~g--iDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~-p~ 121 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLLPFKHIYG--VEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN-PD 121 (204)
T ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEE--EECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-HH
Confidence 7999999999999999886 677888 888999999998753 37788888877 88899999999999998775 44
Q ss_pred hHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+..++.++.|++ ++++++.++..
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 5789999999998 57888877644
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=132.07 Aligned_cols=131 Identities=15% Similarity=0.222 Sum_probs=99.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC----CccEEEccCC--CCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQ--RLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~--~Lpf~d~sF 380 (467)
+...+...++. +|||+|||+|.++..+++.+.+|++ +|+++.|++.+.+.. .+.++++|+. .+++++++|
T Consensus 29 il~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~~v~g--iD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 29 ILSLLPPYEGK--SVLELGAGIGRFTGELAKKAGQVIA--LDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred HHhhcCccCCC--EEEEeCCCcCHHHHHHHhhCCEEEE--EeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence 33444444444 8999999999999999998888888 778888888765432 3678888875 567888999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------CHHHHHHHHHHcCceee
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------------DLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------------~~~~~~~~i~~~Gf~~l 442 (467)
|+|+++.+++|+.+ ..+..++.++.|+|||||++++.+...... ....|.+++.+.|+...
T Consensus 105 D~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 105 DLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred EEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 99999999965554 346789999999999999999965433221 13478888888777554
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.5e-11 Score=114.42 Aligned_cols=140 Identities=17% Similarity=0.204 Sum_probs=95.2
Q ss_pred HHHHhc-CCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------
Q 012235 307 ISDILA-IKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------- 374 (467)
Q Consensus 307 I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------- 374 (467)
+++... ++++. +|||+|||+|.++..++++. ..|+++|++ + +. ....+.++++|+...+
T Consensus 42 ~~~~~~~~~~~~--~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~--~-~~----~~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 42 IQQSDKLFKPGM--TVVDLGAAPGGWSQYAVTQIGDKGRVIACDIL--P-MD----PIVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred HHHHhccCCCCC--EEEEEcccCCHHHHHHHHHcCCCceEEEEecc--c-cc----CCCCcEEEecCCCChHHHHHHHHH
Confidence 334444 45665 89999999999999998872 478885554 3 21 1123788999988753
Q ss_pred cCCCccceEEeccccccccchh---------hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE
Q 012235 375 FFDNTMDLIHTTGFMDGWLDML---------LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~---------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+.+++||+|+|+.++ ++.... ..+.++.++.++|||||.|++..+.. ++..++...+++. |..+.+.
T Consensus 113 ~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~-f~~v~~~ 188 (209)
T PRK11188 113 VGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSL-FTKVKVR 188 (209)
T ss_pred hCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhC-ceEEEEE
Confidence 567899999998876 443211 12468999999999999999976543 3344555555544 7777764
Q ss_pred Ecc---CCCCceEEEEE
Q 012235 446 ISP---KSKDEVYLSAL 459 (467)
Q Consensus 446 ~~~---k~~devyl~av 459 (467)
... ....|.|+.+.
T Consensus 189 Kp~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 189 KPDSSRARSREVYIVAT 205 (209)
T ss_pred CCccccccCceeEEEee
Confidence 322 25667888654
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-11 Score=112.57 Aligned_cols=98 Identities=24% Similarity=0.335 Sum_probs=80.9
Q ss_pred eEEEECCCccHHHHHHhhCCC---EEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV---TIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~---~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++... .+++ +|+++.+++.+.++. .+.++.+++..+++.+++||+|+++.+++|.
T Consensus 42 ~vldiG~G~G~~~~~~~~~~~~~~~~~~--iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 42 KVLDVACGTGDLAIELAKSAPDRGKVTG--VDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred eEEEeCCCCChhHHHHHHhcCCCceEEE--EECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence 899999999999999988743 6777 677788877776643 3778889988888878899999999998555
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+. ..+++++.++|+|||.+++.++..
T Consensus 120 ~~~---~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 120 TDI---QKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred ccH---HHHHHHHHHHcCCCcEEEEEEecC
Confidence 544 689999999999999999877644
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=119.99 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=88.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH----cCC---ccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL----RGL---IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~----rg~---i~~~~~d~~~Lpf~d~ 378 (467)
+.+.+.+++|. +|||||||.|.++.+++++ |++|+| +++|+++.+.+.+ +|. +.+...|...+ .+
T Consensus 64 ~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~G--vTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e 136 (283)
T COG2230 64 ILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVG--VTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EE 136 (283)
T ss_pred HHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEE--eeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---cc
Confidence 55667889998 9999999999999999998 899999 6667766655544 453 55666665555 45
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
.||-|+|...++|+... ....++..+.++|+|||.+++.+.....
T Consensus 137 ~fDrIvSvgmfEhvg~~-~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 137 PFDRIVSVGMFEHVGKE-NYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ccceeeehhhHHHhCcc-cHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 59999999999888764 3579999999999999999997766654
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-11 Score=120.01 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=94.7
Q ss_pred ceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHH--HHHc--CC-cc-EEE-ccCCCCccCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEM--IALR--GL-IP-LYV-TLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~--a~~r--g~-i~-~~~-~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
++|||||||.|+++.+|+.+|.. |+|+|++ .....+ +.++ +. .. +.. ...+++|. .+.||+|+|..+|+
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~--~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPS--PLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCCEEEEECCC--hHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 38999999999999999999874 8885544 432222 1111 11 22 222 35778887 78999999999999
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceeeEEEEccC
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
|..++ -..|.++...|+|||.+++.+.....+ ....+..++++.||+.++-.-...
T Consensus 194 Hrr~P---l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 194 HRRSP---LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP 270 (315)
T ss_pred ccCCH---HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence 99888 489999999999999999987765443 356889999999999988764443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=107.76 Aligned_cols=130 Identities=17% Similarity=0.113 Sum_probs=93.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sF 380 (467)
++...+...++. +|||+|||+|.++..+++.+.++++ +|+++.+++.+.++ + .+.++.+|....+ .++|
T Consensus 10 ~l~~~l~~~~~~--~vLdlG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~f 83 (179)
T TIGR00537 10 LLEANLRELKPD--DVLEIGAGTGLVAIRLKGKGKCILT--TDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKF 83 (179)
T ss_pred HHHHHHHhcCCC--eEEEeCCChhHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcc
Confidence 344444444444 7999999999999999999877888 67778887776543 2 2567777765543 4699
Q ss_pred ceEEeccccccccch------------------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 381 DLIHTTGFMDGWLDM------------------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 381 DlVis~~~L~h~~~~------------------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
|+|+++..+.+..+. ...+.++.++.|+|||||.+++...... +...+.+.+++.||...
T Consensus 84 D~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 84 DVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRYE 161 (179)
T ss_pred cEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeEE
Confidence 999999877444321 1145789999999999999999765433 23467888888888554
Q ss_pred E
Q 012235 443 K 443 (467)
Q Consensus 443 ~ 443 (467)
.
T Consensus 162 ~ 162 (179)
T TIGR00537 162 I 162 (179)
T ss_pred E
Confidence 3
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=111.95 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=90.5
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHH----HHcCCccEEEccCCCC----ccCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMI----ALRGLIPLYVTLNQRL----PFFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a----~~rg~i~~~~~d~~~L----pf~d~sF 380 (467)
+.+.++. +|||+|||+|.++..+++.. ..|++ +|+++.|++.+ +++..+.++.+|.... ++ .++|
T Consensus 68 l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~a--vD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~ 142 (226)
T PRK04266 68 FPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYA--VEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKV 142 (226)
T ss_pred CCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEE--EECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccC
Confidence 6677777 89999999999999999872 46777 77788776644 3344577888887541 22 3569
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec------ccCCCC-HHHHHHHHHHcCceeeEEEEccC
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF------FCNKKD-LDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~------~~~~~~-~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
|+|++.... +.....++.++.|+|||||.+++... ...... .+...+.++..||+.+.+.....
T Consensus 143 D~i~~d~~~-----p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 143 DVIYQDVAQ-----PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred CEEEECCCC-----hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 999965432 21124578999999999999999422 211111 12456888999999998876544
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-11 Score=113.31 Aligned_cols=149 Identities=17% Similarity=0.229 Sum_probs=94.2
Q ss_pred cccccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEcc
Q 012235 290 KEKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTL 369 (467)
Q Consensus 290 ~e~~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d 369 (467)
.+...|-. ...+..|..+....++- .|-|+|||.+.++..+. .+++|.++|+-... -.+..+|
T Consensus 50 ~Qv~~WP~---nPvd~iI~~l~~~~~~~--viaD~GCGdA~la~~~~-~~~~V~SfDLva~n-----------~~Vtacd 112 (219)
T PF05148_consen 50 QQVKKWPV---NPVDVIIEWLKKRPKSL--VIADFGCGDAKLAKAVP-NKHKVHSFDLVAPN-----------PRVTACD 112 (219)
T ss_dssp HHHCTSSS----HHHHHHHHHCTS-TTS---EEEES-TT-HHHHH---S---EEEEESS-SS-----------TTEEES-
T ss_pred HHHhcCCC---CcHHHHHHHHHhcCCCE--EEEECCCchHHHHHhcc-cCceEEEeeccCCC-----------CCEEEec
Confidence 55567755 45666666555443333 89999999999997764 56789997664321 3588899
Q ss_pred CCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccC
Q 012235 370 NQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 370 ~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
+.++|++++++|+|++..+| .-.+ +..++.|+.|+|||||.|+|.+....-++.+.+.+.++.+||+...-...
T Consensus 113 ia~vPL~~~svDv~VfcLSL-MGTn---~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~-- 186 (219)
T PF05148_consen 113 IANVPLEDESVDVAVFCLSL-MGTN---WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES-- 186 (219)
T ss_dssp TTS-S--TT-EEEEEEES----SS----HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE----
T ss_pred CccCcCCCCceeEEEEEhhh-hCCC---cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC--
Confidence 99999999999999998888 3333 36899999999999999999987776667789999999999988764332
Q ss_pred CCCceEEEEEeecC
Q 012235 450 SKDEVYLSALLEKP 463 (467)
Q Consensus 450 ~~devyl~avlqKP 463 (467)
+..|....+.|.
T Consensus 187 --n~~F~~f~F~K~ 198 (219)
T PF05148_consen 187 --NKHFVLFEFKKI 198 (219)
T ss_dssp --STTEEEEEEEE-
T ss_pred --CCeEEEEEEEEc
Confidence 233444455554
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=112.49 Aligned_cols=100 Identities=13% Similarity=0.004 Sum_probs=81.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH-cC-----------------CccEEEccCCCCccC-CCcc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL-RG-----------------LIPLYVTLNQRLPFF-DNTM 380 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~-rg-----------------~i~~~~~d~~~Lpf~-d~sF 380 (467)
+|||+|||.|..+..|+++|.+|+| +|+|+.+++.++. .+ .++++++|+..++.. .+.|
T Consensus 37 rvLd~GCG~G~da~~LA~~G~~V~g--vD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 37 RVFVPLCGKSLDLAWLAEQGHRVLG--VELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred eEEEeCCCchhHHHHHHhCCCeEEE--EeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 8999999999999999999999999 8888888887533 11 267789998887643 4679
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
|.|+...++.|+.+. ..+..+..+.++|||||++++.++..
T Consensus 115 D~i~D~~~~~~l~~~-~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 115 DAVYDRAALIALPEE-MRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CEEEechhhccCCHH-HHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 999998888666544 46789999999999999877766543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-11 Score=129.73 Aligned_cols=110 Identities=18% Similarity=0.260 Sum_probs=86.7
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCc--cCCCc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLP--FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lp--f~d~s 379 (467)
.+....++. +|||+|||+|.++..+++. +..++| +|+++.|++.++++ + .+.++++|+..+| +++++
T Consensus 412 ~i~d~~~g~--rVLDIGCGTG~ls~~LA~~~P~~kVtG--IDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 412 IILDYIKGD--TIVDVGAGGGVMLDMIEEETEDKRIYG--IDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred HHhhhcCCC--EEEEeCCCCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCC
Confidence 344545555 8999999999999888875 567877 88889999888654 1 2566888988887 78899
Q ss_pred cceEEecccccccc----------chhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 380 MDLIHTTGFMDGWL----------DMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 380 FDlVis~~~L~h~~----------~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
||+|+++.++++|. +...+..+++++.|+|||||.+++.+...
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 99999999985553 12346789999999999999999987543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=111.13 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=76.3
Q ss_pred ceEEEECCCccHHHHHHhh----CC--CEEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMRE----QN--VTIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~----~g--~~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..|++ .| .+++| +|+++.|++.++++. .+.+.+.+...++..+++||+|+++.++
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTA--IDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEE--EcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 3899999999999888875 24 46777 889999999887652 3667777777777778899999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+.++ ....++.++.|+++ |.+++.++
T Consensus 140 hh~~d~-~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 140 HHLDDA-EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred ecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence 776654 35689999999998 55555543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-11 Score=120.61 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=79.2
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--------C----ccEEEccCCCCccCCCccceEEec
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--------L----IPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--------~----i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
++|||+|||+|.++..|++.|.+|+| +|.++.|++.|++.. . +.+.+.+.+.+ .+.||.|+|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~G--ID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTG--IDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEe--ecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 47999999999999999999999999 889999999887531 1 22334444444 3559999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+++|..++ ..++..+.+.|||||.+++++...
T Consensus 166 evleHV~dp---~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHVKDP---QEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHhCH---HHHHHHHHHHhCCCCceEeeehhh
Confidence 999999887 589999999999999999987543
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-11 Score=122.88 Aligned_cols=107 Identities=23% Similarity=0.310 Sum_probs=84.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+.+.+.+.++. +|||||||+|.++..+++. +.+|++ +|+|+.+++.+.++. .+.+...|...+ +++||.
T Consensus 159 l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~g--iDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~ 231 (383)
T PRK11705 159 ICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVG--VTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDR 231 (383)
T ss_pred HHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEE--EeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCE
Confidence 33445667776 8999999999999999976 788888 788899998887653 255666776554 578999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|++..+++|.... .++.++.++.++|||||.+++.++.
T Consensus 232 Ivs~~~~ehvg~~-~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 232 IVSVGMFEHVGPK-NYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred EEEeCchhhCChH-HHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 9999999666433 3578999999999999999997654
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-10 Score=115.09 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=80.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d 377 (467)
+.+.+.+.++. +|||||||+|.++..++++. .++++ +|. +.+++.+.+ .+ .+.++.+|+...++++
T Consensus 141 l~~~~~~~~~~--~vlDiG~G~G~~~~~~~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~ 215 (306)
T TIGR02716 141 LLEEAKLDGVK--KMIDVGGGIGDISAAMLKHFPELDSTI--LNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 215 (306)
T ss_pred HHHHcCCCCCC--EEEEeCCchhHHHHHHHHHCCCCEEEE--Eec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC
Confidence 44445555554 89999999999999999884 55666 454 466665543 23 3778899987666543
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+|+|+...++++|.+. ....+++++.++|||||.+++.++..
T Consensus 216 --~D~v~~~~~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 216 --ADAVLFCRILYSANEQ-LSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred --CCEEEeEhhhhcCChH-HHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 6999999999666554 34689999999999999999987644
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-10 Score=107.46 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=91.4
Q ss_pred CCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-C-ccCCCccceEEeccccc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-L-PFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-L-pf~d~sFDlVis~~~L~ 390 (467)
.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.+..++ +.++++++.. + ++++++||+|+++.+++
T Consensus 12 ~~~~--~iLDiGcG~G~~~~~l~~~~~~~~~g--iD~s~~~i~~a~~~~-~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 12 PPGS--RVLDLGCGDGELLALLRDEKQVRGYG--IEIDQDGVLACVARG-VNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCC--EEEEeCCCCCHHHHHHHhccCCcEEE--EeCCHHHHHHHHHcC-CeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 3444 8999999999999999765 556666 788899988887665 6788888765 4 36788999999999997
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecc-------------------------------cCCCCHHHHHHHHHHcCc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFF-------------------------------CNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~-------------------------------~~~~~~~~~~~~i~~~Gf 439 (467)
|..+. ..+++++.|+++++ ++..+. ..-...+++.++++..||
T Consensus 87 ~~~d~---~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 87 ATRNP---EEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred cCcCH---HHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 66554 57899999887753 222100 001134588899999999
Q ss_pred eeeEEEEccC
Q 012235 440 KKHKWAISPK 449 (467)
Q Consensus 440 ~~l~W~~~~k 449 (467)
+.+.......
T Consensus 161 ~v~~~~~~~~ 170 (194)
T TIGR02081 161 RILDRAAFDV 170 (194)
T ss_pred EEEEEEEecc
Confidence 9887665543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.6e-11 Score=112.25 Aligned_cols=116 Identities=20% Similarity=0.238 Sum_probs=84.2
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccC-CCCc--cCCCccceEEecc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLN-QRLP--FFDNTMDLIHTTG 387 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~-~~Lp--f~d~sFDlVis~~ 387 (467)
.+|||+|||+|.++..+++. +..+++ +|+++.+++.+.++ + .+.++++|+ +.++ +++++||+|++++
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~g--VD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIG--IEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEE--EEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 38999999999999999876 456777 77788888777542 2 377899998 7776 7788999999987
Q ss_pred ccccccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 388 FMDGWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 388 ~L~h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
.. +|... ...+.++.++.++|||||.|++.+. .......+.+.++..|+
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD--WEGYAEYMLEVLSAEGG 174 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--CHHHHHHHHHHHHhCcc
Confidence 65 34221 0125789999999999999998542 11122255566666654
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.8e-11 Score=116.55 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=77.4
Q ss_pred ceEEEECCCccH----HHHHHhhC-------CCEEEEEecCCCHHHHHHHHHc---------------------------
Q 012235 319 RIGLDFGVGTGT----FAARMREQ-------NVTIVSTALNLGAPFNEMIALR--------------------------- 360 (467)
Q Consensus 319 r~VLDIGCGtG~----~a~~La~~-------g~~V~gvdiDiS~~~l~~a~~r--------------------------- 360 (467)
.+|+|+|||+|. ++..+++. +..|+| +|+++.|++.|++.
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g--~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILA--TDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEE--EECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 489999999995 55555553 356777 77888999888652
Q ss_pred ------CCccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 361 ------GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 361 ------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+.+.+.|+...++++++||+|+|..+++|+.+ .....++.++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1367888898888877899999999999966643 345789999999999999999954
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.3e-12 Score=105.48 Aligned_cols=89 Identities=22% Similarity=0.384 Sum_probs=53.6
Q ss_pred EEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCc-c-CCCccceEEecccccc
Q 012235 322 LDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLP-F-FDNTMDLIHTTGFMDG 391 (467)
Q Consensus 322 LDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lp-f-~d~sFDlVis~~~L~h 391 (467)
||||||+|.++..+.+. +.++++ +|+|+.|++.++++ .. ............ . ..++||+|++..+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~--~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTG--VDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEE--EESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999988 667777 67777777544432 22 223333322221 1 1269999999999966
Q ss_pred ccchhhHHHHHHHHHhccCCCcEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLL 415 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~L 415 (467)
+ ++ ++.++..+.++|||||.|
T Consensus 79 l-~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L-ED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S---HHHHHHHHTTT-TSS-EE
T ss_pred h-hh--HHHHHHHHHHHcCCCCCC
Confidence 6 33 479999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-10 Score=109.57 Aligned_cols=121 Identities=12% Similarity=0.114 Sum_probs=90.9
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEecccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
.+|||+|||+|.++..+++.+..++| +|+++.|++.++++ + .+.+.++|+..++ ++||+|++..++.|
T Consensus 57 ~~vLDiGcG~G~~~~~la~~~~~v~g--vD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKRGAIVKA--VDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIH 131 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHCCCEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHh
Confidence 38999999999999999999888888 77788888877653 1 3678888887765 78999999999977
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEeccc------------CC---------CCHHHHHHHHHHcCceeeEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFC------------NK---------KDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~------------~~---------~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+... .+..++.++.+++++++++.+..... .. ...+++.++++..||..+.-.
T Consensus 132 ~~~~-~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 132 YPAS-DMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred CCHH-HHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 7543 36789999999999877766532110 00 023467778888888776543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-10 Score=107.02 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=78.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..++.. +.+|++ +|.++.|++.+.+ .+ .+.++.+|+..++ .+++||+|++.. + +
T Consensus 45 ~vLDiGcGtG~~s~~la~~~~~~~V~~--iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-~ 119 (181)
T TIGR00138 45 KVIDIGSGAGFPGIPLAIARPELKLTL--LESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-A 119 (181)
T ss_pred eEEEecCCCCccHHHHHHHCCCCeEEE--EeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-h
Confidence 8999999999999988765 356777 6777776665532 23 3788899988874 367999999976 3 2
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH---cCceeeE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ---FRYKKHK 443 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~---~Gf~~l~ 443 (467)
+ +..++..+.++|+|||.+++... .....++....++ .|+..+.
T Consensus 120 --~---~~~~~~~~~~~LkpgG~lvi~~~---~~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 120 --S---LNVLLELTLNLLKVGGYFLAYKG---KKYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred --C---HHHHHHHHHHhcCCCCEEEEEcC---CCcHHHHHHHHHhhhhcCceEee
Confidence 1 34678889999999999998642 2222344444444 6776654
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=103.28 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=82.4
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----cCC--ccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----RGL--IPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----rg~--i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|..+..++.. +.+|++ +|.++.|++.+.+ .+. +.++.+++..++. +++||+|+++...
T Consensus 48 ~VLDiGcGtG~~al~la~~~~~~~V~g--iD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~~-- 122 (187)
T PRK00107 48 RVLDVGSGAGFPGIPLAIARPELKVTL--VDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAVA-- 122 (187)
T ss_pred eEEEEcCCCCHHHHHHHHHCCCCeEEE--EeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcccc--
Confidence 8999999999999988864 677888 7777777776653 232 7888999888877 7899999997532
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
+ ++.++.++.++|||||.+++.... .....+.+..+..|...
T Consensus 123 --~---~~~~l~~~~~~LkpGG~lv~~~~~---~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 123 --S---LSDLVELCLPLLKPGGRFLALKGR---DPEEEIAELPKALGGKV 164 (187)
T ss_pred --C---HHHHHHHHHHhcCCCeEEEEEeCC---ChHHHHHHHHHhcCceE
Confidence 1 367999999999999999987543 23335566666667653
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-09 Score=99.58 Aligned_cols=130 Identities=16% Similarity=0.201 Sum_probs=91.0
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC----ccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL----IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~----i~~~~~d~~~Lpf~d~ 378 (467)
+.+.+...++. +|||+|||+|.++..+++++.++++ +|.++.+++.++++ +. +.++++|... ++.++
T Consensus 15 l~~~~~~~~~~--~vLd~G~G~G~~~~~l~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~ 89 (188)
T PRK14968 15 LAENAVDKKGD--RVLEVGTGSGIVAIVAAKNGKKVVG--VDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGD 89 (188)
T ss_pred HHHhhhccCCC--EEEEEccccCHHHHHHHhhcceEEE--EECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-ccccc
Confidence 33444344554 8999999999999999999888888 66777777766432 21 5677777554 34456
Q ss_pred ccceEEecccccccc------------------chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 379 TMDLIHTTGFMDGWL------------------DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 379 sFDlVis~~~L~h~~------------------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
+||+|+++..+.+.. ....+..+++++.++|||||.+++..... ...+.+.+++.+.||+
T Consensus 90 ~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--~~~~~l~~~~~~~g~~ 167 (188)
T PRK14968 90 KFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--TGEDEVLEYLEKLGFE 167 (188)
T ss_pred CceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--CCHHHHHHHHHHCCCe
Confidence 899999876553211 01224568999999999999988865432 2334788899999987
Q ss_pred eeE
Q 012235 441 KHK 443 (467)
Q Consensus 441 ~l~ 443 (467)
...
T Consensus 168 ~~~ 170 (188)
T PRK14968 168 AEV 170 (188)
T ss_pred eee
Confidence 553
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-10 Score=109.44 Aligned_cols=98 Identities=14% Similarity=0.028 Sum_probs=78.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH-cC-----------------CccEEEccCCCCccCC-Ccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL-RG-----------------LIPLYVTLNQRLPFFD-NTM 380 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~-rg-----------------~i~~~~~d~~~Lpf~d-~sF 380 (467)
+|||+|||.|..+..|+++|.+|+| +|+|+.+++.+.. ++ .+.+.++|+..++..+ +.|
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V~a--vD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f 117 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEVLG--VELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV 117 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeEEE--EccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence 8999999999999999999999999 8888888887642 22 2567888888875432 689
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+|+...++.|+. .......+..+.++|+|||++++.++
T Consensus 118 d~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 118 DAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred eEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 9999998886664 44468999999999999997555433
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.6e-10 Score=108.42 Aligned_cols=158 Identities=13% Similarity=0.205 Sum_probs=110.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCE--EEEEecCCCHHHHHHHHHcCC-----ccEEEccC----CCCc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVT--IVSTALNLGAPFNEMIALRGL-----IPLYVTLN----QRLP 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~--V~gvdiDiS~~~l~~a~~rg~-----i~~~~~d~----~~Lp 374 (467)
....++........+||+||||.|.....+.+...+ ..-+..|.|+.+++...++.. +...+.|+ ..-|
T Consensus 60 Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~ 139 (264)
T KOG2361|consen 60 EFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEP 139 (264)
T ss_pred hhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCC
Confidence 344555443332237899999999988888876322 333449999999998876532 22222221 1235
Q ss_pred cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CH
Q 012235 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DL 427 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~ 427 (467)
...+++|+|++.++|+...+. ....++.++.++|||||.+++-++...+- +.
T Consensus 140 ~~~~svD~it~IFvLSAi~pe-k~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~ 218 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLSAIHPE-KMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTE 218 (264)
T ss_pred CCcCccceEEEEEEEeccChH-HHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccH
Confidence 678999999999999665554 46899999999999999999987654321 24
Q ss_pred HHHHHHHHHcCceeeEEEEccC---------CCCceEEEEEeecCC
Q 012235 428 DDYMYMFLQFRYKKHKWAISPK---------SKDEVYLSALLEKPP 464 (467)
Q Consensus 428 ~~~~~~i~~~Gf~~l~W~~~~k---------~~devyl~avlqKP~ 464 (467)
+++.+++.+.||..++-.+... ....+|+.++++||.
T Consensus 219 eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 219 EELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL 264 (264)
T ss_pred HHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence 5888899999996554432221 455679999999984
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.9e-10 Score=106.19 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=90.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCc-cCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLP-FFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lp-f~d~sFDlVis~~~L~h~~ 393 (467)
+|||||||+|.++..+++.+..+++ +|+++.+++.+.++ +. +.+...+...++ ..++.||+|++..++.|..
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~~~v~~--iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~ 128 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLGADVTG--IDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP 128 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcCCeEEE--EcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccC
Confidence 8999999999999999998888888 66677777766543 22 556677766654 3457999999999997766
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCC---------------------------CCHHHHHHHHHHcCceeeEE
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNK---------------------------KDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~---------------------------~~~~~~~~~i~~~Gf~~l~W 444 (467)
+. ..++..+.++|+|||.+++..+.... -..+++.+++++.||..+.-
T Consensus 129 ~~---~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 129 DP---ASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred CH---HHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 55 57899999999999999987542110 02346788888999976643
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.5e-10 Score=106.38 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=74.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFF 376 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~ 376 (467)
+.+.+.+.++. +|||+|||+|..+..+++. +.+|++ +|+++.+++.++++ + .+.++.+|.......
T Consensus 64 ~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~--iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 64 MCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYT--VEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 44555666666 8999999999999888875 357888 77777777766542 3 267888888765445
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.++||+|++..++.+ +..++.++|+|||.+++..
T Consensus 140 ~~~fD~Ii~~~~~~~---------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 140 HAPFDAIIVTAAAST---------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCCccEEEEccCcch---------hhHHHHHhcCcCcEEEEEE
Confidence 679999999988743 3357889999999998843
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-09 Score=101.04 Aligned_cols=136 Identities=22% Similarity=0.302 Sum_probs=85.4
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------cCCCcc
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP--------FFDNTM 380 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp--------f~d~sF 380 (467)
.+.++. +|||+|||+|.++..++++. ..++++|++ +.+ ....+.++.+|..+.+ +++++|
T Consensus 29 ~i~~g~--~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis--~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 29 LIKPGD--TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQ--PMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred ccCCCC--EEEEecCCCCHHHHHHHHHhCCCceEEEEecc--ccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 456666 89999999999999888762 358885554 432 1223677777776543 456789
Q ss_pred ceEEecccc--------ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE---EccC
Q 012235 381 DLIHTTGFM--------DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA---ISPK 449 (467)
Q Consensus 381 DlVis~~~L--------~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~---~~~k 449 (467)
|+|++..+. .|....+..+.++.++.++|+|||.+++..+ ..+....+...++.. |....-. .+..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~--~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~ 176 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF--QGEEIDEYLNELRKL-FEKVKVTKPQASRK 176 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc--cCccHHHHHHHHHhh-hceEEEeCCCCCCc
Confidence 999996542 1211112246789999999999999998643 233444555555443 4332221 2222
Q ss_pred CCCceEEEEE
Q 012235 450 SKDEVYLSAL 459 (467)
Q Consensus 450 ~~devyl~av 459 (467)
.+.|.|+.++
T Consensus 177 ~~~~~~~~~~ 186 (188)
T TIGR00438 177 RSAEVYIVAK 186 (188)
T ss_pred ccceEEEEEe
Confidence 4557787653
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=107.73 Aligned_cols=100 Identities=21% Similarity=0.234 Sum_probs=79.0
Q ss_pred eEEEECCCccHHHHHHh-hCCCEEEEEecCCCHHHHHHHHHc-----C-Ccc-EEEccCCCCc-cCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMR-EQNVTIVSTALNLGAPFNEMIALR-----G-LIP-LYVTLNQRLP-FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La-~~g~~V~gvdiDiS~~~l~~a~~r-----g-~i~-~~~~d~~~Lp-f~d~sFDlVis~~~L~ 390 (467)
.||++|||||..-...- ..+..|++ +|.++.|.+.+.++ . .+. +++++.+++| .+++++|.|++.+++-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~--lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTC--LDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEE--eCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 58999999997655544 34788998 77888887766432 1 144 8899999999 8899999999999995
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
...+. .+.|+++.|+|||||.+++.+.....
T Consensus 157 Sve~~---~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 157 SVEDP---VKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred ccCCH---HHHHHHHHHhcCCCcEEEEEeccccc
Confidence 44444 79999999999999999997655433
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-10 Score=106.88 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=87.4
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.+.|.|+|||+|..+..|+++ +..++| +|.|.+|++.|+.+.. ..|..+|+..+. ++..+|+++++.++ ||.+
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~G--iDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAvl-qWlp 106 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITG--IDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAVL-QWLP 106 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEee--ccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhhh-hhcc
Confidence 458999999999999999999 677777 9999999999988865 889999988875 46789999999999 9987
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+. ..+|..+...|.|||.|.+.-+....
T Consensus 107 dH--~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 107 DH--PELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred cc--HHHHHHHHHhhCCCceEEEECCCccC
Confidence 74 68999999999999999987654433
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=102.62 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=87.4
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.++. +|||+|||+|.++..+++++ ..+++ +|+++.+++.+.++ + .+.++.++.. .++ +++|
T Consensus 25 ~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~--vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~ 98 (187)
T PRK08287 25 SKLELHRAK--HLIDVGAGTGSVSIEAALQFPSLQVTA--IERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKA 98 (187)
T ss_pred HhcCCCCCC--EEEEECCcCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCC
Confidence 445555555 89999999999999998873 57777 67777777766542 2 2667777753 233 4689
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
|+|++.....+ +..++.++.++|+|||++++..... ++...+.+.+++.||+.+..
T Consensus 99 D~v~~~~~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~~--~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 99 DAIFIGGSGGN------LTAIIDWSLAHLHPGGRLVLTFILL--ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred CEEEECCCccC------HHHHHHHHHHhcCCCeEEEEEEecH--hhHHHHHHHHHHCCCCcceE
Confidence 99999876421 3468899999999999998854322 33457788899999865543
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=92.88 Aligned_cols=102 Identities=23% Similarity=0.242 Sum_probs=74.7
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC-CccCCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR-LPFFDN 378 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~-Lpf~d~ 378 (467)
.+.+.+.++. +|||+|||+|.++..++++ +..+++ +|.++.+++.++++ + .+.++.++... ++...+
T Consensus 12 ~~~~~~~~~~--~vldlG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 12 LSKLRLRPGD--VLWDIGAGSGSITIEAARLVPNGRVYA--IERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCceEEE--EcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 3444555555 8999999999999999987 356777 77778877776532 2 35666777654 333456
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+||.|++.....+ ...++.++.++|||||.|++..
T Consensus 88 ~~D~v~~~~~~~~------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGSGGL------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCEEEECCcchh------HHHHHHHHHHHcCCCCEEEEEe
Confidence 8999999776521 3578999999999999999854
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=102.98 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=95.2
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-Cc-cCCCccceEEecccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-LP-FFDNTMDLIHTTGFM 389 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-Lp-f~d~sFDlVis~~~L 389 (467)
+.++. +|||+|||.|.+...|.+. +++..| ++++++.+..+.++| ++++++|++. ++ |++++||.|+.+.++
T Consensus 11 I~pgs--rVLDLGCGdG~LL~~L~~~k~v~g~G--vEid~~~v~~cv~rG-v~Viq~Dld~gL~~f~d~sFD~VIlsqtL 85 (193)
T PF07021_consen 11 IEPGS--RVLDLGCGDGELLAYLKDEKQVDGYG--VEIDPDNVAACVARG-VSVIQGDLDEGLADFPDQSFDYVILSQTL 85 (193)
T ss_pred cCCCC--EEEecCCCchHHHHHHHHhcCCeEEE--EecCHHHHHHHHHcC-CCEEECCHHHhHhhCCCCCccEEehHhHH
Confidence 45666 8999999999999999874 666777 667777888888888 6789988654 43 889999999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEeccc-------------------------------CCCCHHHHHHHHHHcC
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC-------------------------------NKKDLDDYMYMFLQFR 438 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~-------------------------------~~~~~~~~~~~i~~~G 438 (467)
.+...+ +.+|.|+.|+- ...+++-+.. +--...++.++.++.|
T Consensus 86 Q~~~~P---~~vL~EmlRVg---r~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 86 QAVRRP---DEVLEEMLRVG---RRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred HhHhHH---HHHHHHHHHhc---CeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence 877766 58899998874 4545542211 0003568888999999
Q ss_pred ceeeEEEEccC
Q 012235 439 YKKHKWAISPK 449 (467)
Q Consensus 439 f~~l~W~~~~k 449 (467)
++.++......
T Consensus 160 i~I~~~~~~~~ 170 (193)
T PF07021_consen 160 IRIEERVFLDG 170 (193)
T ss_pred CEEEEEEEEcC
Confidence 98887766554
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=107.08 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=86.1
Q ss_pred eEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 320 IGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
+|||+|||+|.++..+++.|.. |++ +|+++.+++.++++. .+. +...++..+.+||+|+++....
T Consensus 122 ~VLDiGcGsG~l~i~~~~~g~~~v~g--iDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~----- 190 (250)
T PRK00517 122 TVLDVGCGSGILAIAAAKLGAKKVLA--VDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILAN----- 190 (250)
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEE--EECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHH-----
Confidence 8999999999999988888765 777 677788887776541 121 1111222223799999976431
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecC
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKP 463 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP 463 (467)
.+..++.++.++|||||+++++.+.. ++.+.+.+.+++.||+...-.. .+-|...+++|+
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~~-----~~~W~~~~~~~~ 250 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILE--EQADEVLEAYEEAGFTLDEVLE-----RGEWVALVGKKK 250 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcH--hhHHHHHHHHHHCCCEEEEEEE-----eCCEEEEEEEeC
Confidence 13578899999999999999987653 3345778888899998765322 122555667764
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-09 Score=108.93 Aligned_cols=133 Identities=16% Similarity=0.141 Sum_probs=89.3
Q ss_pred eEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHH----cCC-ccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIAL----RGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~----rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++++ ..|++ +|+++.+++.+++ .+. ..++.+|... ..++.||+|+++..+ |.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~--vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPF-H~ 273 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTL--SDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPF-HD 273 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCc-cC
Confidence 79999999999999999874 46777 7777888877754 222 3455566543 236789999999988 54
Q ss_pred c---chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecCCC
Q 012235 393 L---DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPR 465 (467)
Q Consensus 393 ~---~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP~~ 465 (467)
. .....+.++.++.++|||||.|+++.-... .|.+.+++. |....... ++..-..+.+..+|+.+
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l-----~y~~~l~~~-Fg~~~~la--~~~~f~v~~a~~~~~~~ 341 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL-----PYPDLLDET-FGSHEVLA--QTGRFKVYRAIMTRQAK 341 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC-----ChHHHHHHH-cCCeEEEE--eCCCEEEEEEEccCcCC
Confidence 2 223357899999999999999988653221 244555554 55554433 22333455566666543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-10 Score=110.87 Aligned_cols=144 Identities=18% Similarity=0.224 Sum_probs=109.1
Q ss_pred CCcChHHHHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCc--
Q 012235 299 RSVPVDFLISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLP-- 374 (467)
Q Consensus 299 ~~~~~d~~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lp-- 374 (467)
-++..+..+.+++. ...+..+++||+|||||..+..|..+....+| +|+|.+|++.+.+++. -.+.++++..+-
T Consensus 106 L~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltG--vDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~ 183 (287)
T COG4976 106 LGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTG--VDISENMLAKAHEKGLYDTLYVAEAVLFLED 183 (287)
T ss_pred hcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccC--CchhHHHHHHHHhccchHHHHHHHHHHHhhh
Confidence 34455566666665 44555789999999999999999988778888 8999999999999987 345566655432
Q ss_pred cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------CHHHHHHHHHHcCcee
Q 012235 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------------DLDDYMYMFLQFRYKK 441 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------------~~~~~~~~i~~~Gf~~ 441 (467)
..+..||+|++..++ .+... ++.++.-+...|+|||.|.++.-....+ ....+..+++..|+..
T Consensus 184 ~~~er~DLi~AaDVl-~YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 184 LTQERFDLIVAADVL-PYLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEV 260 (287)
T ss_pred ccCCcccchhhhhHH-Hhhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceE
Confidence 457889999999999 44444 5789999999999999999974332222 1236777889999988
Q ss_pred eEEEEc
Q 012235 442 HKWAIS 447 (467)
Q Consensus 442 l~W~~~ 447 (467)
+.-.-.
T Consensus 261 i~~~~t 266 (287)
T COG4976 261 IAIEDT 266 (287)
T ss_pred EEeecc
Confidence 866533
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-09 Score=102.51 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=86.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++.+..+++ +|+++.+++.++++ + .+.+..+| ++..+++||+|++..+++|+
T Consensus 66 ~vLDvGcG~G~~~~~l~~~~~~v~~--~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 66 RILDAGCGVGSLSIPLARRGAKVVA--SDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred EEEEEeCCCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcC
Confidence 8999999999999999999888888 77788888887653 1 36677777 34456899999999999777
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecc-------------c-CC-------CCHHHHHHHHHHcCceeeEEEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFF-------------C-NK-------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~-------------~-~~-------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
.+. ....++.++.+.+++++.+.+.... . .. -...++.++++..||+......
T Consensus 141 ~~~-~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 141 PQE-DAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred CHH-HHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 654 3678889999987655544332110 0 00 0223677788888887665543
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-09 Score=105.26 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=96.4
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHH----HHHHHHHcCCccEEEccCCC---CccCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAP----FNEMIALRGLIPLYVTLNQR---LPFFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~----~l~~a~~rg~i~~~~~d~~~---Lpf~d~sF 380 (467)
+.++++. +|||+|||+|.++..+++. + -.|++ +|+++. +++.+..+.++.+++.|+.. +.....+|
T Consensus 128 l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyA--VD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 128 IPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYA--VEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred eccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEE--EECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCC
Confidence 3467776 8999999999999999987 2 46888 555554 55666666667788888653 22234689
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC---CCHHHH----HHHHHHcCceeeEEEEcc-CCCC
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK---KDLDDY----MYMFLQFRYKKHKWAISP-KSKD 452 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~---~~~~~~----~~~i~~~Gf~~l~W~~~~-k~~d 452 (467)
|+|++..+. .+. .+.++.++.++|||||.|+|..-...- .+.++. .+.+++.||+.+.-.... ..++
T Consensus 204 DvV~~Dva~---pdq--~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~ 278 (293)
T PTZ00146 204 DVIFADVAQ---PDQ--ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERD 278 (293)
T ss_pred CEEEEeCCC---cch--HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCC
Confidence 999998753 222 346778999999999999994322211 123322 467888899877655443 3555
Q ss_pred ceEEEEEeecC
Q 012235 453 EVYLSALLEKP 463 (467)
Q Consensus 453 evyl~avlqKP 463 (467)
...+..++..+
T Consensus 279 h~~v~~~~~~~ 289 (293)
T PTZ00146 279 HAVVIGVYRPV 289 (293)
T ss_pred cEEEEEEEcCC
Confidence 55555556544
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-09 Score=109.03 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=92.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf~d~sF 380 (467)
+..+....++. +|||+|||+|.++..++..+..++| +|+++.|++.++.+ +. +.+..+|+.++|+.+++|
T Consensus 174 ~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g--~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 174 MVNLARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIG--CDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEE--EcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 33445566666 8999999999999988888989998 66667777765432 32 578899999999888999
Q ss_pred ceEEecccccc---cc---chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 381 DLIHTTGFMDG---WL---DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 381 DlVis~~~L~h---~~---~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
|+|+++..... .. .......++.++.|+|||||++++..+... .+.+.++..|| .+
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR-VV 311 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc-ch
Confidence 99999754311 00 112246899999999999999988654332 35567888888 44
|
This family is found exclusively in the Archaea. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=105.32 Aligned_cols=100 Identities=25% Similarity=0.209 Sum_probs=75.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC---EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNV---TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~---~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
.+.+.+.+.++. +|||||||+|.++..|++... .|++ +|+++.+++.++++ + .+.++++|.......
T Consensus 68 ~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~--vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 68 MMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVS--IERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 344566777776 999999999999999988732 4777 67778887776543 3 377888887665444
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.++||+|++..... .+...+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~~~~---------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGP---------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCcc---------cccHHHHHhcCcCcEEEEE
Confidence 57899999887652 3445678899999999884
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=104.64 Aligned_cols=99 Identities=22% Similarity=0.189 Sum_probs=75.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d 377 (467)
+.+.+.+.++. +|||||||+|+++..+++. +.+|++ +|+++.+++.++++ + .+.++++|........
T Consensus 68 ~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~--vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 68 MCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVT--IERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 44556677776 9999999999999988876 257888 77778887777543 2 3788899987665567
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+.||+|++..+.. .....+.+.|||||.+++.
T Consensus 144 ~~fD~I~~~~~~~---------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGP---------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcc---------cchHHHHHhhCCCcEEEEE
Confidence 8999999987763 2334677799999999884
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=100.74 Aligned_cols=75 Identities=21% Similarity=0.168 Sum_probs=63.8
Q ss_pred ecCCCHHHHHHHHHcC---------CccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 346 ALNLGAPFNEMIALRG---------LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 346 diDiS~~~l~~a~~rg---------~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
++|+|+.|++.++++. .+.++++|+.++|+++++||+|++.++++++.+. ..+++++.|+|||||.|+
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~---~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR---LRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH---HHHHHHHHHHcCcCeEEE
Confidence 4899999999886431 3789999999999999999999999999656544 689999999999999999
Q ss_pred EEecccC
Q 012235 417 IDRFFCN 423 (467)
Q Consensus 417 I~~~~~~ 423 (467)
+.++..+
T Consensus 79 i~d~~~~ 85 (160)
T PLN02232 79 ILDFNKS 85 (160)
T ss_pred EEECCCC
Confidence 9877543
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-09 Score=101.32 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=86.2
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
.+|||+|||+|.++..+++. +..+++ +|+++.+++.+..+ + .+.++.+|... ++++++||+|+++....
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~--iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTA--VDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 37999999999999999987 457777 67778887776542 3 26788888765 45678999999975542
Q ss_pred c------ccch-----------------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 391 G------WLDM-----------------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 391 h------~~~~-----------------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
. +... .....++.++.++|+|||.+++..- ....+.+.+++++.||..+.-
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---YDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC---ccHHHHHHHHHHhCCCCceEE
Confidence 1 1111 1124678999999999999998542 223347788888999977654
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=101.99 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=77.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC-CCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF-DNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++.+..+++ +|.++.+++.+.++ + .+.+..++...++.. +++||+|++..+++|.
T Consensus 48 ~vLdlG~G~G~~~~~l~~~~~~v~~--iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 48 RVLDVGCGGGLLSEPLARLGANVTG--IDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred eEEEECCCCCHHHHHHHhcCCeEEE--EeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 8999999999999999988888888 66777777766542 2 266777777766644 4789999999999666
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
.+. ..++.++.++|+|||.+++...
T Consensus 126 ~~~---~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 126 PDP---QAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred CCH---HHHHHHHHHhcCCCcEEEEEec
Confidence 555 6899999999999999988754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=99.98 Aligned_cols=108 Identities=22% Similarity=0.277 Sum_probs=75.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCE--EEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCccCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVT--IVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~--V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf~d 377 (467)
.+.+.+....+. +|||+|||+|.++..+++++.. |++ +|+++.+++.+.+. +. +.++..|.... .++
T Consensus 22 lL~~~l~~~~~~--~vLDlG~G~G~i~~~la~~~~~~~v~~--vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~ 96 (170)
T PF05175_consen 22 LLLDNLPKHKGG--RVLDLGCGSGVISLALAKRGPDAKVTA--VDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPD 96 (170)
T ss_dssp HHHHHHHHHTTC--EEEEETSTTSHHHHHHHHTSTCEEEEE--EESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCT
T ss_pred HHHHHHhhccCC--eEEEecCChHHHHHHHHHhCCCCEEEE--EcCCHHHHHHHHHHHHhcCcccccccccccccc-ccc
Confidence 344444433444 8999999999999999998666 666 67778887777542 22 56777775442 337
Q ss_pred CccceEEeccccccccch---hhHHHHHHHHHhccCCCcEEEEEe
Q 012235 378 NTMDLIHTTGFMDGWLDM---LLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~---~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.||+|+++..+ |.... ...+.++.+..+.|||||.|++..
T Consensus 97 ~~fD~Iv~NPP~-~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 97 GKFDLIVSNPPF-HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TCEEEEEE---S-BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceeEEEEccch-hcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 899999999887 44332 235788999999999999998744
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=103.56 Aligned_cols=145 Identities=20% Similarity=0.313 Sum_probs=101.8
Q ss_pred cccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCC
Q 012235 292 KPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ 371 (467)
Q Consensus 292 ~~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~ 371 (467)
-..|-. +..+..|.. +...++. ..|-|+|||.+.+|. .....|+++|+-.. .-.++.+|+.
T Consensus 160 V~kWP~---nPld~ii~~-ik~r~~~-~vIaD~GCGEakiA~---~~~~kV~SfDL~a~-----------~~~V~~cDm~ 220 (325)
T KOG3045|consen 160 VKKWPE---NPLDVIIRK-IKRRPKN-IVIADFGCGEAKIAS---SERHKVHSFDLVAV-----------NERVIACDMR 220 (325)
T ss_pred HHhCCC---ChHHHHHHH-HHhCcCc-eEEEecccchhhhhh---ccccceeeeeeecC-----------CCceeecccc
Confidence 345644 345555544 4444443 278999999998876 34467888554321 1367889999
Q ss_pred CCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCC
Q 012235 372 RLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSK 451 (467)
Q Consensus 372 ~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~ 451 (467)
++|.++++.|++++..+| ...+ +..++.|+.|+|||||.++|.+.-..-.+...+.+.+..+||...+-...
T Consensus 221 ~vPl~d~svDvaV~CLSL-Mgtn---~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~---- 292 (325)
T KOG3045|consen 221 NVPLEDESVDVAVFCLSL-MGTN---LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS---- 292 (325)
T ss_pred CCcCccCcccEEEeeHhh-hccc---HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh----
Confidence 999999999999988877 2333 46899999999999999999887665566668999999999976654332
Q ss_pred CceEEEEEeecC
Q 012235 452 DEVYLSALLEKP 463 (467)
Q Consensus 452 devyl~avlqKP 463 (467)
+..|....++|+
T Consensus 293 n~~F~lfefkK~ 304 (325)
T KOG3045|consen 293 NKYFTLFEFKKT 304 (325)
T ss_pred cceEEEEEEecC
Confidence 222444456665
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.6e-10 Score=105.84 Aligned_cols=97 Identities=18% Similarity=0.337 Sum_probs=74.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc---cCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP---FFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp---f~d~sFDlVis~~~ 388 (467)
++||||||+|.++..++++ +..++| +|++..+++.+.++ + .+.++++|+..++ ++++++|.|++++.
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p~~~v~g--vD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNPDKNFLG--IEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCCCCCEEE--EEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 8999999999999999987 456777 77778887776532 2 4788889987654 45679999999886
Q ss_pred cccccchh------hHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDML------LLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~------~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
. +|.... ..+.++.++.|+|||||.|++.+
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 5 554321 11468999999999999998865
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-08 Score=97.78 Aligned_cols=121 Identities=15% Similarity=0.151 Sum_probs=83.4
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceEEec
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
+.++. +|||+|||+|.++..+++.+. .+++ +|+++.+++.++++ +. +.++.+|.... +++++||+|+++
T Consensus 34 ~~~~~--~vLDlGcG~G~~~~~la~~~~~~v~~--vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~n 108 (223)
T PRK14967 34 LGPGR--RVLDLCTGSGALAVAAAAAGAGSVTA--VDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSN 108 (223)
T ss_pred cCCCC--eEEEecCCHHHHHHHHHHcCCCeEEE--EECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEEC
Confidence 45555 899999999999999998765 7877 66777777765542 32 56777776553 456799999998
Q ss_pred cccccccc------------------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 387 GFMDGWLD------------------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 387 ~~L~h~~~------------------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
.....-.. ...++.++.++.++|||||.+++..... .....+.+.++..||.
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~--~~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL--SGVERTLTRLSEAGLD 178 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--cCHHHHHHHHHHCCCC
Confidence 54321100 1124567889999999999999854322 2344677777777764
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.8e-09 Score=102.23 Aligned_cols=138 Identities=18% Similarity=0.220 Sum_probs=98.1
Q ss_pred CceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCc--cCCCccceEEec
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLP--FFDNTMDLIHTT 386 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lp--f~d~sFDlVis~ 386 (467)
..+|||+|||+|..+..++++ . ..+++ +++.+.+.+.|.+. ..+.++++|...+. ....+||+|+|+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~--VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVG--VEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEE--EEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 448999999999999999998 3 67777 66667777777643 23889999987765 334579999998
Q ss_pred cccc---------------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc--eeeEEEEccC
Q 012235 387 GFMD---------------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY--KKHKWAISPK 449 (467)
Q Consensus 387 ~~L~---------------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf--~~l~W~~~~k 449 (467)
-... ++.....++..++-..++|||||.+.+... .+...++.+.+.++++ ++++.+....
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r---~erl~ei~~~l~~~~~~~k~i~~V~p~~ 199 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR---PERLAEIIELLKSYNLEPKRIQFVYPKI 199 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec---HHHHHHHHHHHHhcCCCceEEEEecCCC
Confidence 6542 233334467899999999999999998653 3344578888888777 4555555544
Q ss_pred CCC--ceEEEEEe
Q 012235 450 SKD--EVYLSALL 460 (467)
Q Consensus 450 ~~d--evyl~avl 460 (467)
++. -+.+.++.
T Consensus 200 ~k~A~~vLv~~~k 212 (248)
T COG4123 200 GKAANRVLVEAIK 212 (248)
T ss_pred CCcceEEEEEEec
Confidence 332 23444443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6e-09 Score=98.98 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=87.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-ccCC
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-PFFD 377 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-pf~d 377 (467)
..+.+.++. +|||+|||+|.++..++.. +.+|++ +|.++.+++.++++ + .+.++.+|...+ +..+
T Consensus 34 ~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~a--vD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~ 109 (198)
T PRK00377 34 SKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYA--VDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN 109 (198)
T ss_pred HHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC
Confidence 334556666 8999999999999988764 357888 77777777766432 3 356777777653 3334
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc--eeeEEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY--KKHKWAI 446 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf--~~l~W~~ 446 (467)
+.||.|++.... ..+..++.++.++|||||.+++... .-+......+.+++.|| +.+.|..
T Consensus 110 ~~~D~V~~~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~ 172 (198)
T PRK00377 110 EKFDRIFIGGGS------EKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNLEITEVII 172 (198)
T ss_pred CCCCEEEECCCc------ccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCeEEEEEeh
Confidence 689999986532 1136789999999999999987443 22344577778888887 3455544
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=106.44 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=89.1
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-----------CccEEEccCCCCccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-----------LIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-----------~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
+|||+|||+|.++..++++|..|++ +|+++.|++.++++. .+.+..+|...+ +++||+|+|..+
T Consensus 147 ~VLDlGcGtG~~a~~la~~g~~V~g--vD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~v 221 (315)
T PLN02585 147 TVCDAGCGTGSLAIPLALEGAIVSA--SDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDV 221 (315)
T ss_pred EEEEecCCCCHHHHHHHHCCCEEEE--EECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCE
Confidence 8999999999999999999999988 888999998876542 145666665543 688999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecc-------------cCC---------CCHHHHHHHHHHcCceeeEEEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF-------------CNK---------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~-------------~~~---------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
++|+.+.. ...++..+.+ +.+||.++...+. ... ...+++.++++..||+...-..
T Consensus 222 L~H~p~~~-~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~ 299 (315)
T PLN02585 222 LIHYPQDK-ADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREM 299 (315)
T ss_pred EEecCHHH-HHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEE
Confidence 98876653 3456666665 4566654432110 000 0245788899999998653322
Q ss_pred ccCCCCceEEEEEe
Q 012235 447 SPKSKDEVYLSALL 460 (467)
Q Consensus 447 ~~k~~devyl~avl 460 (467)
. .+..|++.++
T Consensus 300 ~---~~~~y~~~l~ 310 (315)
T PLN02585 300 T---ATQFYFSRLL 310 (315)
T ss_pred e---ecceeHHhhh
Confidence 1 2344555444
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.6e-09 Score=103.43 Aligned_cols=110 Identities=13% Similarity=0.230 Sum_probs=77.6
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----CC---ccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----GL---IPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g~---i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..+++.|. .|++ +|+++.+++.++++ +. +.+..++ ..+..+++||+|+++....
T Consensus 162 ~VLDvGcGsG~lai~aa~~g~~~V~a--vDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 162 NVIDVGCGSGILSIAALKLGAAKVVG--IDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILAE- 236 (288)
T ss_pred EEEEeCCChhHHHHHHHHcCCCeEEE--EECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCHH-
Confidence 899999999999999888764 6888 67777887777653 21 2333333 2234467999999987542
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
.+..++.++.++|||||+++++.+.. ++.+.+.+.+++. |+.+
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILE--TQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcH--hHHHHHHHHHHcc-Ccee
Confidence 13578999999999999999987643 2334566666654 5444
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-08 Score=101.57 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=94.1
Q ss_pred cChHHHHHHHhc--CCCCCCceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHH---cCCccE-E-EccCCC
Q 012235 301 VPVDFLISDILA--IKPGETRIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIAL---RGLIPL-Y-VTLNQR 372 (467)
Q Consensus 301 ~~~d~~I~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~---rg~i~~-~-~~d~~~ 372 (467)
+....+-.+.+. ..++. +|||+|||+|.++...++.|.. |+|+|+| +.+++.+++ ++.+.. . ......
T Consensus 146 HpTT~lcL~~Le~~~~~g~--~vlDvGcGSGILaIAa~kLGA~~v~g~DiD--p~AV~aa~eNa~~N~v~~~~~~~~~~~ 221 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGK--TVLDVGCGSGILAIAAAKLGAKKVVGVDID--PQAVEAARENARLNGVELLVQAKGFLL 221 (300)
T ss_pred ChhHHHHHHHHHHhhcCCC--EEEEecCChhHHHHHHHHcCCceEEEecCC--HHHHHHHHHHHHHcCCchhhhcccccc
Confidence 344444444443 23444 9999999999999999999876 9996655 555555543 233331 1 111112
Q ss_pred CccCC-CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCC
Q 012235 373 LPFFD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSK 451 (467)
Q Consensus 373 Lpf~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~ 451 (467)
+.... +.||+|++|-.- +. +..+..++.+.|||||+++++...... .+.+.+.+.+.||........
T Consensus 222 ~~~~~~~~~DvIVANILA----~v--l~~La~~~~~~lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~~~~---- 289 (300)
T COG2264 222 LEVPENGPFDVIVANILA----EV--LVELAPDIKRLLKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEVLER---- 289 (300)
T ss_pred hhhcccCcccEEEehhhH----HH--HHHHHHHHHHHcCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEEEec----
Confidence 22333 699999998733 12 357889999999999999998865443 446778888888887766542
Q ss_pred CceEEEEEeec
Q 012235 452 DEVYLSALLEK 462 (467)
Q Consensus 452 devyl~avlqK 462 (467)
++ |...+.+|
T Consensus 290 ~e-W~~i~~kr 299 (300)
T COG2264 290 EE-WVAIVGKR 299 (300)
T ss_pred CC-EEEEEEEc
Confidence 23 44445555
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-09 Score=92.23 Aligned_cols=99 Identities=24% Similarity=0.275 Sum_probs=74.2
Q ss_pred eEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCc--cCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLP--FFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lp--f~d~sFDlVis~~~L 389 (467)
+|||+|||+|.++..+++.+ .++++ +|+++.+++.++.+ ..+.++++|...+. +.+++||+|+++-..
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~g--vdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTG--VDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEE--EESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEE--EEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 79999999999999999998 88888 55556666665542 23789999987776 778999999999877
Q ss_pred ccccc-----hhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 390 DGWLD-----MLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 390 ~h~~~-----~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
..... ......++.++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 43211 11246789999999999999988653
|
... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-08 Score=104.78 Aligned_cols=154 Identities=22% Similarity=0.216 Sum_probs=100.7
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCc--c
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLP--F 375 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lp--f 375 (467)
..+...+...++. +|||+|||+|..+..+++.+ ..|++ +|.++.+++.++++ +. +.++++|+..++ +
T Consensus 234 ~~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a--~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 234 QLAATLLAPQNGE--RVLDACAAPGGKTAHILELAPQAQVVA--LDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW 309 (427)
T ss_pred HHHHHHcCCCCCC--EEEEeCCCCChHHHHHHHHcCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc
Confidence 3455567777776 89999999999999999874 46777 77778877776543 32 567888887654 3
Q ss_pred CCCccceEEeccccc-----------ccc-chh-------hHHHHHHHHHhccCCCcEEEEEecccCC-CCHHHHHHHHH
Q 012235 376 FDNTMDLIHTTGFMD-----------GWL-DML-------LLDFILFDWDRILRPGGLLWIDRFFCNK-KDLDDYMYMFL 435 (467)
Q Consensus 376 ~d~sFDlVis~~~L~-----------h~~-~~~-------~l~~~L~el~RvLKPGG~LiI~~~~~~~-~~~~~~~~~i~ 435 (467)
.+++||.|++...-. .|. ... ....++..+.++|||||.+++++..... ++.+.+...++
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~ 389 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA 389 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH
Confidence 457899999543211 111 111 1246899999999999999998865543 34445556666
Q ss_pred Hc-CceeeE--------EEEccC-CCCceEEEEEeec
Q 012235 436 QF-RYKKHK--------WAISPK-SKDEVYLSALLEK 462 (467)
Q Consensus 436 ~~-Gf~~l~--------W~~~~k-~~devyl~avlqK 462 (467)
+. +++.+. +.+.+. ...+.++.+.++|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k 426 (427)
T PRK10901 390 RHPDAELLDTGTPQQPGRQLLPGEEDGDGFFYALLIK 426 (427)
T ss_pred hCCCCEEecCCCCCCCceEECCCCCCCCCeEEEEEEE
Confidence 54 344333 333332 2234577777876
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=102.63 Aligned_cols=141 Identities=23% Similarity=0.382 Sum_probs=90.1
Q ss_pred ChHHHHHHHhc--CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHH----HcCC-ccEEEccCCCC
Q 012235 302 PVDFLISDILA--IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIA----LRGL-IPLYVTLNQRL 373 (467)
Q Consensus 302 ~~d~~I~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~----~rg~-i~~~~~d~~~L 373 (467)
.......+++. ..++. +|||+|||+|.++...++.|. .|+++|+|. .+++.++ .++. ..+.+.....
T Consensus 146 ~TT~lcl~~l~~~~~~g~--~vLDvG~GSGILaiaA~klGA~~v~a~DiDp--~Av~~a~~N~~~N~~~~~~~v~~~~~- 220 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGK--RVLDVGCGSGILAIAAAKLGAKKVVAIDIDP--LAVEAARENAELNGVEDRIEVSLSED- 220 (295)
T ss_dssp HHHHHHHHHHHHHSSTTS--EEEEES-TTSHHHHHHHHTTBSEEEEEESSC--HHHHHHHHHHHHTT-TTCEEESCTSC-
T ss_pred HHHHHHHHHHHHhccCCC--EEEEeCCcHHHHHHHHHHcCCCeEEEecCCH--HHHHHHHHHHHHcCCCeeEEEEEecc-
Confidence 33344344443 34454 999999999999999999876 688966664 4444443 3443 2333322222
Q ss_pred ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCc
Q 012235 374 PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDE 453 (467)
Q Consensus 374 pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~de 453 (467)
...+.||+|++|-... . +..++..+.++|+|||+|+++.+...+ .+.+.+.+++ ||+.+..... ++
T Consensus 221 -~~~~~~dlvvANI~~~----v--L~~l~~~~~~~l~~~G~lIlSGIl~~~--~~~v~~a~~~-g~~~~~~~~~----~~ 286 (295)
T PF06325_consen 221 -LVEGKFDLVVANILAD----V--LLELAPDIASLLKPGGYLILSGILEEQ--EDEVIEAYKQ-GFELVEEREE----GE 286 (295)
T ss_dssp -TCCS-EEEEEEES-HH----H--HHHHHHHCHHHEEEEEEEEEEEEEGGG--HHHHHHHHHT-TEEEEEEEEE----TT
T ss_pred -cccccCCEEEECCCHH----H--HHHHHHHHHHhhCCCCEEEEccccHHH--HHHHHHHHHC-CCEEEEEEEE----CC
Confidence 3358999999987652 1 356788899999999999998876643 4467777776 8887765431 23
Q ss_pred eEEEEEeec
Q 012235 454 VYLSALLEK 462 (467)
Q Consensus 454 vyl~avlqK 462 (467)
|...+++|
T Consensus 287 -W~~l~~~K 294 (295)
T PF06325_consen 287 -WVALVFKK 294 (295)
T ss_dssp -EEEEEEEE
T ss_pred -EEEEEEEe
Confidence 55556666
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=106.46 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=103.6
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc-
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP- 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp- 374 (467)
..+...+...++. +|||+|||+|..+..+++. ...|++ +|+++.+++.+.++ | .+.++.+|+..++
T Consensus 242 ~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 242 QLVAPLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWA--VDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE 317 (434)
T ss_pred HHHHHHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEE--EcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc
Confidence 3445566777776 8999999999999999876 246777 77778777766542 3 2678888887765
Q ss_pred ---cCCCccceEEecc------ccccccc------hhh-------HHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHH
Q 012235 375 ---FFDNTMDLIHTTG------FMDGWLD------MLL-------LDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYM 431 (467)
Q Consensus 375 ---f~d~sFDlVis~~------~L~h~~~------~~~-------l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~ 431 (467)
+..++||.|++.. ++.+.++ ... ...++.++.++|||||+++.++.....++.+ .+.
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~ 397 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIE 397 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH
Confidence 4467899999642 2322111 011 2578999999999999999988776555444 666
Q ss_pred HHHHHc-CceeeEEE--EccC-CCCceEEEEEeecC
Q 012235 432 YMFLQF-RYKKHKWA--ISPK-SKDEVYLSALLEKP 463 (467)
Q Consensus 432 ~~i~~~-Gf~~l~W~--~~~k-~~devyl~avlqKP 463 (467)
..+++. +|+..... .-+. ..-+.|+.++++|.
T Consensus 398 ~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 398 QFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred HHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEeC
Confidence 677665 45432110 1111 23466888899885
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-09 Score=109.83 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=75.5
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCC--ccCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRL--PFFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~L--pf~d~sFDlVis~~~L 389 (467)
.+||||||+|.++..++.+ +..++| +|++.++++.+.+ .+ .+.++.+|+..+ .++++++|.|++++..
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iG--IEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIG--IEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEE--EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 8999999999999999988 456777 7777777666643 33 377888888654 4778999999998765
Q ss_pred ccccchhh----HHHHHHHHHhccCCCcEEEEEe
Q 012235 390 DGWLDMLL----LDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 390 ~h~~~~~~----l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.|..... ...++.++.|+|+|||.+.+.+
T Consensus 203 -PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 203 -PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred -CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 6653311 2478999999999999999954
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=97.84 Aligned_cols=101 Identities=21% Similarity=0.147 Sum_probs=73.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.+.++. +|||+|||+|.++..+++....+++ +|.++.+++.+.++ + .+.+..+|........++|
T Consensus 70 l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~~~v~~--vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 70 MTELLELKPGD--RVLEIGTGSGYQAAVLAHLVRRVFS--VERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHhcCCCCCC--EEEEECCCccHHHHHHHHHhCEEEE--EeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 34456666666 8999999999999988887667888 66668777766543 2 2677888865432234789
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+|++..+.. .+..++.+.|+|||.+++...
T Consensus 146 D~I~~~~~~~---------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAP---------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCch---------hhhHHHHHhcCCCcEEEEEEc
Confidence 9999988763 234567899999999998553
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.5e-09 Score=108.04 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=72.5
Q ss_pred eEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----C-----CccEEEccCCCCccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----G-----LIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g-----~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
+|||+|||+|.++..+++++ .+|++ +|.++.+++.++++ + .+.++.+|.... +++++||+|+|+..
T Consensus 231 ~VLDLGCGtGvi~i~la~~~P~~~V~~--vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 231 EIVDLGCGNGVIGLTLLDKNPQAKVVF--VDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred eEEEEeccccHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 89999999999999999874 57777 77778888777642 1 246666665432 34568999999988
Q ss_pred ccccc---chhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWL---DMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~---~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+ |.. .......++.++.++|+|||.|+++.
T Consensus 308 f-h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 F-HQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred c-ccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 7 432 22334678999999999999999974
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.8e-09 Score=99.89 Aligned_cols=105 Identities=19% Similarity=0.315 Sum_probs=78.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEE-----c--cCCCCccCCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYV-----T--LNQRLPFFDN 378 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~-----~--d~~~Lpf~d~ 378 (467)
.+..+.....+. +.++|+|||+|.-++.+++.-.+|++ .|+++.|++.+.+...+...+ . +...|--.++
T Consensus 23 w~~~ia~~~~~h-~~a~DvG~G~Gqa~~~iae~~k~VIa--tD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~ 99 (261)
T KOG3010|consen 23 WFKKIASRTEGH-RLAWDVGTGNGQAARGIAEHYKEVIA--TDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEE 99 (261)
T ss_pred HHHHHHhhCCCc-ceEEEeccCCCcchHHHHHhhhhhee--ecCCHHHHHHhhcCCCcccccCCccccccccccccCCCc
Confidence 334445554443 48999999999777888888778998 788999999988765433322 2 2333333489
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCc-EEEE
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGG-LLWI 417 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG-~LiI 417 (467)
+.|+|++.-++ ||.+. +.+..++.|+||+.| .+.+
T Consensus 100 SVDlI~~Aqa~-HWFdl---e~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 100 SVDLITAAQAV-HWFDL---ERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ceeeehhhhhH-Hhhch---HHHHHHHHHHcCCCCCEEEE
Confidence 99999999999 99987 689999999999888 4444
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-08 Score=96.72 Aligned_cols=100 Identities=12% Similarity=-0.032 Sum_probs=83.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc------------------CCccEEEccCCCCccC---CC
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR------------------GLIPLYVTLNQRLPFF---DN 378 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r------------------g~i~~~~~d~~~Lpf~---d~ 378 (467)
+||+.|||.|.-+.+|+++|+.|+| +|+|+.+++.+.++ ..+.++++|...++.. .+
T Consensus 46 rvLvPgCGkg~D~~~LA~~G~~V~G--vDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFLSKGVKVIG--IELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred eEEEeCCCChHHHHHHHhCCCcEEE--EecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 8999999999999999999999999 88888888886441 1378999999988642 26
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.||+|+-..++.++.+. ......+.+.++|+|||.+++..+..
T Consensus 124 ~fD~VyDra~~~Alpp~-~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 124 VFDIWYDRGAYIALPND-LRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CcCeeeeehhHhcCCHH-HHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 89999999988666544 46899999999999999998877643
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.4e-08 Score=97.44 Aligned_cols=127 Identities=15% Similarity=0.170 Sum_probs=85.5
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..++++ +..|++ +|+++.+++.++++ + .+.++.+|... ++++++||+|+++-..
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~a--vDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDA--VDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 38999999999999999987 457777 77788888777643 3 36788888643 2345689999997322
Q ss_pred c------cc------cc----------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc
Q 012235 390 D------GW------LD----------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 390 ~------h~------~~----------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
. +. .+ ....+.++.++.++|+|||.+++.... +.+.+.+.+...|| .|..-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~~~~v~~~~~~~~~---~~~~~ 272 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----SMEALEEAYPDVPF---TWLEF 272 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHHhCCC---ceeee
Confidence 1 00 00 012357789999999999999885532 22467777777665 45433
Q ss_pred cCCCCceE
Q 012235 448 PKSKDEVY 455 (467)
Q Consensus 448 ~k~~devy 455 (467)
....+.+|
T Consensus 273 ~~~~~~~~ 280 (284)
T TIGR03533 273 ENGGDGVF 280 (284)
T ss_pred cCCCcEEE
Confidence 33444343
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-08 Score=99.86 Aligned_cols=98 Identities=9% Similarity=0.041 Sum_probs=72.2
Q ss_pred ceEEEECCCccHHHHHHhh--C--CCEEEEEecCCCHHHHHHHHH-----c---CCccEEEccCCCCccCCCccceEEec
Q 012235 319 RIGLDFGVGTGTFAARMRE--Q--NVTIVSTALNLGAPFNEMIAL-----R---GLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~--~--g~~V~gvdiDiS~~~l~~a~~-----r---g~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
++|+|||||.|.++..+.. . +.++++ +|.++.+++.|++ . ..+.|..+|+...+...+.||+|++.
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~g--iD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHN--FDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 4899999998866544433 2 456777 6666777666643 1 23889999987764335789999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
++++|... ....++..+.+.|+|||++++-..
T Consensus 203 -ALi~~dk~-~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 -ALVGMDKE-EKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -cccccccc-cHHHHHHHHHHhcCCCcEEEEecc
Confidence 88677422 247999999999999999999764
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-08 Score=94.13 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=77.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC-CccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR-LPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~-Lpf~d 377 (467)
+...+.+.++. +|||+|||+|.++..+++. +..|++ +|.++.+++.+.++ + .+.++.+|+.. ++...
T Consensus 32 l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~V~~--vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 32 LISQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPKGRVIA--IERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC
Confidence 44555555665 8999999999999988764 467888 77778887776542 2 36777777643 22222
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF 437 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~ 437 (467)
..+|.|+.... . .++.++.++.++|+|||.+++..... +......+.++.+
T Consensus 108 ~~~d~v~~~~~-----~--~~~~~l~~~~~~LkpgG~li~~~~~~--~~~~~~~~~~~~~ 158 (196)
T PRK07402 108 PAPDRVCIEGG-----R--PIKEILQAVWQYLKPGGRLVATASSL--EGLYAISEGLAQL 158 (196)
T ss_pred CCCCEEEEECC-----c--CHHHHHHHHHHhcCCCeEEEEEeecH--HHHHHHHHHHHhc
Confidence 34576654321 1 24689999999999999999976432 1222344455544
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=80.65 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=72.2
Q ss_pred eEEEECCCccHHHHHHhh-CCCEEEEEecCCCHHHHHHHH---Hc---CCccEEEccCCCCcc-CCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMRE-QNVTIVSTALNLGAPFNEMIA---LR---GLIPLYVTLNQRLPF-FDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~---~r---g~i~~~~~d~~~Lpf-~d~sFDlVis~~~L~h 391 (467)
+++|+|||.|.++..+++ .+..+++ +|.++.+...+. .. ..+.++..+...... ..++||+|+++.++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTG--VDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 479999999999999987 4677888 556666665554 11 136777787776653 5678999999999855
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+.. ....++..+.+.|+|||.+++.
T Consensus 79 ~~~--~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVE--DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhh--HHHHHHHHHHHHcCCCCEEEEE
Confidence 322 3578999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-08 Score=101.34 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=71.6
Q ss_pred eEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-----CC--ccEEEccCCC-CccCCC----ccceEE
Q 012235 320 IGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-----GL--IPLYVTLNQR-LPFFDN----TMDLIH 384 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-----g~--i~~~~~d~~~-Lpf~d~----sFDlVi 384 (467)
+|||+|||+|..+..|++. +.++++ +|+|+.|++.++++ .. +.++++|+.+ +++... ...+++
T Consensus 66 ~iLELGcGtG~~t~~Ll~~l~~~~~~~~--iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 66 ELVELGSGSSRKTRLLLDALRQPARYVP--IDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred eEEecCCCcchhHHHHHHhhccCCeEEE--EECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 8999999999999999887 477877 88999998887653 12 4567888765 344333 223444
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+..++.++ ++.....+++++.++|+|||.|++..-
T Consensus 144 ~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 44566444 454467899999999999999998543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=93.37 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=85.5
Q ss_pred eEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..++... ..+++ +|+++.+++.++++ ..+.++.+|... ++.+++||+|+++.....
T Consensus 111 ~vLDiG~GsG~~~~~la~~~~~~~v~~--iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 111 RVLDLGTGSGAIALALAKERPDAEVTA--VDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred EEEEEcCcHHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 89999999999999999874 66777 67778887777653 136778887643 233579999999754311
Q ss_pred c------cc-----------------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEE
Q 012235 392 W------LD-----------------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 392 ~------~~-----------------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
. .+ ......++.++.++|+|||++++..- ....+.+.+++...||..+.+..
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~~~~~~~~~~l~~~gf~~v~~~~ 262 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---YDQGEAVRALLAAAGFADVETRK 262 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---chHHHHHHHHHHhCCCceeEEec
Confidence 0 00 11235678889999999999998442 12234678888889998776643
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-07 Score=93.54 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=86.3
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
.....+...++. +|||+|||+|..+..+++. ...|++ +|+++.+++.+.++ + .+.++.+|+..++..
T Consensus 62 ~~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~ 137 (264)
T TIGR00446 62 IPPLALEPDPPE--RVLDMAAAPGGKTTQISALMKNEGAIVA--NEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA 137 (264)
T ss_pred HHHHHhCCCCcC--EEEEECCCchHHHHHHHHHcCCCCEEEE--EcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh
Confidence 344566777776 8999999999999988875 246777 77788877766542 3 266778887777655
Q ss_pred CCccceEEeccc------ccc-------ccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHH
Q 012235 377 DNTMDLIHTTGF------MDG-------WLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQ 436 (467)
Q Consensus 377 d~sFDlVis~~~------L~h-------~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~ 436 (467)
.+.||.|++... +.+ |... .....+|.++.+.|||||+++.++.....++.+ ....++++
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 667999996421 111 1110 012468999999999999999988766555444 44444444
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=101.60 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=87.5
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
....++...++. +|||+|||+|..+..+++. +..|++ +|+++.+++.+.++ | .+.++.+|+..++ +
T Consensus 241 l~~~~l~~~~g~--~VLDlgaG~G~kt~~la~~~~~~~~V~a--vD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 241 LACLLLNPQPGS--TVLDLCAAPGGKSTFMAELMQNRGQITA--VDRYPQKLEKIRSHASALGITIIETIEGDARSFS-P 315 (445)
T ss_pred HHHHhcCCCCCC--EEEEECCCCCHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-c
Confidence 444566666666 8999999999988888764 357777 77888887766542 3 2678888887765 4
Q ss_pred CCccceEEec----c--ccc-----ccc-chh-------hHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHH
Q 012235 377 DNTMDLIHTT----G--FMD-----GWL-DML-------LLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQ 436 (467)
Q Consensus 377 d~sFDlVis~----~--~L~-----h~~-~~~-------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~ 436 (467)
+++||.|++. . .+. .|. ... ....++.++.++|||||++++++.....++.+ .....+++
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 6789999963 1 111 011 111 12368999999999999999998777554433 55556665
Q ss_pred c
Q 012235 437 F 437 (467)
Q Consensus 437 ~ 437 (467)
.
T Consensus 396 ~ 396 (445)
T PRK14904 396 H 396 (445)
T ss_pred C
Confidence 4
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-07 Score=98.48 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=91.5
Q ss_pred hHHHHHHHhc-CCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCc
Q 012235 303 VDFLISDILA-IKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLP 374 (467)
Q Consensus 303 ~d~~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lp 374 (467)
.+..++.++. +.++. +|||+|||+|.++..++.. +.++++ +|+++.+++.++++ + .+.++++|.....
T Consensus 238 TE~LVe~aL~~l~~~~--rVLDLGcGSG~IaiaLA~~~p~a~VtA--VDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 238 TEHLVEAVLARLPENG--RVWDLGTGSGAVAVTVALERPDAFVRA--SDISPPALETARKNAADLGARVEFAHGSWFDTD 313 (423)
T ss_pred HHHHHHHhhhccCCCC--EEEEEeChhhHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence 3445555544 33343 8999999999999998865 567877 77888888877653 3 3778888875433
Q ss_pred c-CCCccceEEecccccccc----------------------chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHH
Q 012235 375 F-FDNTMDLIHTTGFMDGWL----------------------DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYM 431 (467)
Q Consensus 375 f-~d~sFDlVis~~~L~h~~----------------------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~ 431 (467)
+ ..++||+|+|+.....-. ..+.++.++.++.+.|+|||.+++..-. ++.+.+.
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---~Q~e~V~ 390 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---DQGAAVR 390 (423)
T ss_pred cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---cHHHHHH
Confidence 3 246899999976431100 0012346778888999999998874422 3345788
Q ss_pred HHHHHcCceeeEE
Q 012235 432 YMFLQFRYKKHKW 444 (467)
Q Consensus 432 ~~i~~~Gf~~l~W 444 (467)
++++..||..+.-
T Consensus 391 ~ll~~~Gf~~v~v 403 (423)
T PRK14966 391 GVLAENGFSGVET 403 (423)
T ss_pred HHHHHCCCcEEEE
Confidence 8888888876544
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=101.06 Aligned_cols=130 Identities=18% Similarity=0.106 Sum_probs=86.7
Q ss_pred HHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CC-ccE--EEccCCCCc
Q 012235 304 DFLISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GL-IPL--YVTLNQRLP 374 (467)
Q Consensus 304 d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~-i~~--~~~d~~~Lp 374 (467)
...+...+...++. +|||+|||+|..+..+++. +..|++ +|+++.+++.+.++ +. +.+ ..+|....+
T Consensus 227 s~~~~~~L~~~~g~--~VLDlcag~G~kt~~la~~~~~~~v~a--~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 227 AQWVATWLAPQNEE--TILDACAAPGGKTTHILELAPQAQVVA--LDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred HHHHHHHhCCCCCC--eEEEeCCCccHHHHHHHHHcCCCeEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 34556667777776 8999999999999999876 356777 77778887766543 32 223 445554444
Q ss_pred c--CCCccceEEec------cccccccc------hh-------hHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHH
Q 012235 375 F--FDNTMDLIHTT------GFMDGWLD------ML-------LLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMY 432 (467)
Q Consensus 375 f--~d~sFDlVis~------~~L~h~~~------~~-------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~ 432 (467)
+ .+++||.|++. .++.+.++ .. ....+|.++.++|||||.+++++.....++ .+.+..
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~ 382 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKA 382 (426)
T ss_pred ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHH
Confidence 3 46789999963 23322111 00 125789999999999999999987765443 335555
Q ss_pred HHHHc
Q 012235 433 MFLQF 437 (467)
Q Consensus 433 ~i~~~ 437 (467)
.+++.
T Consensus 383 ~l~~~ 387 (426)
T TIGR00563 383 FLQEH 387 (426)
T ss_pred HHHhC
Confidence 66654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.2e-08 Score=96.39 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=88.5
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEeccccccccch-
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM- 395 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~- 395 (467)
+|||+|||+|.++..++.+ +..|++ +|+++.|++.++++- .+.++++|+..+.. +++||+|+++..+.+....
T Consensus 67 rVLDLGcGsGilsl~la~r~~~~~V~g--VDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCKPEKIVC--VELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCchh
Confidence 8999999999999888775 467888 677788998887653 37888999887653 5789999999888553211
Q ss_pred -h---------------hHHHHHHHHHhccCCCcEEEEEe---ccc-CCCCHHHHHHHHHHcCce
Q 012235 396 -L---------------LLDFILFDWDRILRPGGLLWIDR---FFC-NKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 396 -~---------------~l~~~L~el~RvLKPGG~LiI~~---~~~-~~~~~~~~~~~i~~~Gf~ 440 (467)
. .+...+....++|+|+|.+++.- +.. ..-..++|.++++..||.
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 0 02467788899999999877641 222 223566999999999984
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-07 Score=100.14 Aligned_cols=155 Identities=18% Similarity=0.150 Sum_probs=99.2
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc-
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP- 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp- 374 (467)
..+...+.+.++. +|||+|||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++++|+..++
T Consensus 240 ~lv~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a--vDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~ 315 (444)
T PRK14902 240 MLVAPALDPKGGD--TVLDACAAPGGKTTHIAELLKNTGKVVA--LDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE 315 (444)
T ss_pred HHHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc
Confidence 3455566666666 8999999999999999875 356777 67777777766542 3 2678888887653
Q ss_pred cCCCccceEEecccc------cccc------chhh-------HHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHH
Q 012235 375 FFDNTMDLIHTTGFM------DGWL------DMLL-------LDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMF 434 (467)
Q Consensus 375 f~d~sFDlVis~~~L------~h~~------~~~~-------l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i 434 (467)
...++||+|++...- .+.+ .... ...++.++.++|||||.++.++.....++.+ .+...+
T Consensus 316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l 395 (444)
T PRK14902 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFL 395 (444)
T ss_pred hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHH
Confidence 123789999975321 1110 0011 1357999999999999999877655443333 555566
Q ss_pred HHc-CceeeEE-----------------EEccC-CCCceEEEEEeecC
Q 012235 435 LQF-RYKKHKW-----------------AISPK-SKDEVYLSALLEKP 463 (467)
Q Consensus 435 ~~~-Gf~~l~W-----------------~~~~k-~~devyl~avlqKP 463 (467)
++. +|+.+.. .+-+. ..-+.++.|+++|.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~a~l~k~ 443 (444)
T PRK14902 396 EEHPEFELVPLQHEKPDELVYEVKDGYLQILPNDYGTDGFFIAKLRKK 443 (444)
T ss_pred HhCCCcEEecccccccccccccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence 654 2544331 11222 23356788888874
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-07 Score=99.49 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=88.6
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCc-
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLP- 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lp- 374 (467)
..+..+++..++. +|||+|||+|..+..+++. +..|++ +|+++.+++.+.++ |. +.+.++|+..++
T Consensus 227 ~~~~~~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a--~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 227 QIVPLLMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILA--VDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE 302 (431)
T ss_pred HHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh
Confidence 3455566777776 8999999999999888875 457888 77778887777543 32 568888888776
Q ss_pred cCCCccceEEeccccc---ccc--c-------h-------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHH
Q 012235 375 FFDNTMDLIHTTGFMD---GWL--D-------M-------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMF 434 (467)
Q Consensus 375 f~d~sFDlVis~~~L~---h~~--~-------~-------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i 434 (467)
+.+++||.|++...-. .+. + . .....++.++.+.|||||.+++++.....++.+ .+...+
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl 382 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFV 382 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHH
Confidence 4567899999632111 010 0 0 012467899999999999999998876544433 445555
Q ss_pred HH
Q 012235 435 LQ 436 (467)
Q Consensus 435 ~~ 436 (467)
++
T Consensus 383 ~~ 384 (431)
T PRK14903 383 YE 384 (431)
T ss_pred Hh
Confidence 54
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=91.18 Aligned_cols=138 Identities=20% Similarity=0.225 Sum_probs=90.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCH-HHHHH-HHHcCC---ccEEEccCCC--Ccc------CCCccceEE
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGA-PFNEM-IALRGL---IPLYVTLNQR--LPF------FDNTMDLIH 384 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~-~~l~~-a~~rg~---i~~~~~d~~~--Lpf------~d~sFDlVi 384 (467)
+||+||+|||..+.++++. ..+..-.|+|... ..++. +.+.+. ..-+.-|+.. .+. ..++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999988 4555565666443 22222 333332 1112223222 222 356999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------------CHHHHHHHHHHcCce
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------------DLDDYMYMFLQFRYK 440 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------------~~~~~~~~i~~~Gf~ 440 (467)
|..++ |+.+....+.++..+.++|+|||.|++..++.... +.+++.++..+.|+.
T Consensus 108 ~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~ 186 (204)
T PF06080_consen 108 CINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLE 186 (204)
T ss_pred ehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCc
Confidence 99999 99988888999999999999999999987665332 344566666666666
Q ss_pred eeEEEEccCCCCceEEEEEeec
Q 012235 441 KHKWAISPKSKDEVYLSALLEK 462 (467)
Q Consensus 441 ~l~W~~~~k~~devyl~avlqK 462 (467)
...-...+.++. ..||+|
T Consensus 187 l~~~~~MPANN~----~Lvfrk 204 (204)
T PF06080_consen 187 LEEDIDMPANNL----LLVFRK 204 (204)
T ss_pred cCcccccCCCCe----EEEEeC
Confidence 554443333322 345665
|
The function of this family is unknown. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-08 Score=93.36 Aligned_cols=122 Identities=21% Similarity=0.280 Sum_probs=90.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH---Hc-C---CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA---LR-G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~---~r-g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||.|.+...|++.|.+---+++|.|+.+++.|+ ++ + .|.|.+.|+..-.+..+.||+|+--..+..+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 899999999999999999976543344899998877664 23 2 2889999988877888999999975554322
Q ss_pred -----cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 393 -----LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 393 -----~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
.....+...+..+.+.|+|||.|+|....... +++.+.++..||..++-
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~---dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK---DELVEEFENFNFEYLST 203 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH---HHHHHHHhcCCeEEEEe
Confidence 12222345788899999999999997765443 46777888877766544
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-08 Score=96.85 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=79.5
Q ss_pred CCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 317 ETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 317 ~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
..++|+|||+|.|.++..++++ +.+++. .|. +..++.+.+...+.++.+|.. -+++. +|+|+...++++|.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v--~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d 173 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATV--FDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD 173 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEE--EE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-H
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCccee--ecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcch
Confidence 3458999999999999999988 455555 555 556666666667999999987 56655 999999999988877
Q ss_pred hhhHHHHHHHHHhccCCC--cEEEEEecccCCC
Q 012235 395 MLLLDFILFDWDRILRPG--GLLWIDRFFCNKK 425 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPG--G~LiI~~~~~~~~ 425 (467)
.. ...+|+++.+.|+|| |.++|.++..+..
T Consensus 174 ~~-~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 174 ED-CVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp HH-HHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred HH-HHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 64 579999999999999 9999998876554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-08 Score=90.52 Aligned_cols=104 Identities=10% Similarity=0.130 Sum_probs=75.2
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccceE
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
.+.+.+.++. +|||+|||+|.++..+++++..+++ +|+++.+++.++++ ..+.++.+|+..+++++..||.|
T Consensus 6 ~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~~~v~~--vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 6 VRAANLRPGD--TVLEIGPGKGALTEELLERAARVTA--IEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred HHhcCCCCcC--EEEEECCCccHHHHHHHhcCCeEEE--EECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEE
Confidence 3444555555 8999999999999999999888888 55667777777654 24788999999998877789999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++..+ |.... .+..++.+ ..+.++|.+++..
T Consensus 82 i~n~Py-~~~~~-~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 82 VGNLPY-NISTP-ILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred EECCCc-ccHHH-HHHHHHhc--CCCcceEEEEEEH
Confidence 998776 54332 12333332 1245888888753
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=92.04 Aligned_cols=129 Identities=22% Similarity=0.218 Sum_probs=91.7
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-C-----------------CccEEEccCCC
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-G-----------------LIPLYVTLNQR 372 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-g-----------------~i~~~~~d~~~ 372 (467)
+...++. +||+.|||.|.-+..|+++|++|+| +|+|+.+++.+.++ + .|.++++|...
T Consensus 33 l~~~~~~--rvLvPgCG~g~D~~~La~~G~~VvG--vDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~ 108 (218)
T PF05724_consen 33 LALKPGG--RVLVPGCGKGYDMLWLAEQGHDVVG--VDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE 108 (218)
T ss_dssp HTTSTSE--EEEETTTTTSCHHHHHHHTTEEEEE--EES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred cCCCCCC--eEEEeCCCChHHHHHHHHCCCeEEE--EecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccccc
Confidence 3444544 8999999999999999999999999 88899998887432 1 24678889888
Q ss_pred CccCC-CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------CHHHHHHHHHHcCceee
Q 012235 373 LPFFD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------DLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 373 Lpf~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------~~~~~~~~i~~~Gf~~l 442 (467)
++... ++||+|+=..++ +-.+++......+.+.++|+|||.+++.++..... ..+++.+++. -+|+..
T Consensus 109 l~~~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~ 186 (218)
T PF05724_consen 109 LPPEDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIE 186 (218)
T ss_dssp GGGSCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEE
T ss_pred CChhhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEE
Confidence 87543 589999988888 44455567899999999999999955544433221 2336666666 456555
Q ss_pred EEE
Q 012235 443 KWA 445 (467)
Q Consensus 443 ~W~ 445 (467)
...
T Consensus 187 ~l~ 189 (218)
T PF05724_consen 187 ELE 189 (218)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-07 Score=94.08 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=77.8
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..++.. +.+|++ +|+++.+++.++++ + .+.++++|... ++++++||+|+++-..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~a--vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDA--VDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCC
Confidence 37999999999999999987 457777 77888888777543 3 37788888644 2335689999997322
Q ss_pred c-------------cccc---------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC
Q 012235 390 D-------------GWLD---------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR 438 (467)
Q Consensus 390 ~-------------h~~~---------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G 438 (467)
. |.+. ....+.++.++.++|+|||.+++.... +...+.+.+...|
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~----~~~~~~~~~~~~~ 278 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN----SRVHLEEAYPDVP 278 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHhhCC
Confidence 1 1100 012357889999999999999985432 2234555666554
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=93.34 Aligned_cols=124 Identities=19% Similarity=0.294 Sum_probs=94.7
Q ss_pred CceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
..++||||+|.|..+..|+..-.+|++ -+.|..|....+++|. .++ +..++.-.+..||+|.|..+|.....+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~a--TE~S~~Mr~rL~~kg~-~vl--~~~~w~~~~~~fDvIscLNvLDRc~~P-- 167 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYA--TEASPPMRWRLSKKGF-TVL--DIDDWQQTDFKFDVISCLNVLDRCDRP-- 167 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEe--ecCCHHHHHHHHhCCC-eEE--ehhhhhccCCceEEEeehhhhhccCCH--
Confidence 347999999999999999988777888 6678999999999884 333 222233335789999999999766666
Q ss_pred HHHHHHHHHhccCCCcEEEEEe---------ccc---CCC-------------CHHHHHHHHHHcCceeeEEEEccC
Q 012235 398 LDFILFDWDRILRPGGLLWIDR---------FFC---NKK-------------DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~---------~~~---~~~-------------~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
..+|+++.+.|+|+|.++++. ... .+. ..+.+.+.++..||+...|.-.+.
T Consensus 168 -~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 168 -LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPY 243 (265)
T ss_pred -HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCc
Confidence 589999999999999998852 111 000 123556888999999999987776
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-08 Score=98.78 Aligned_cols=122 Identities=18% Similarity=0.378 Sum_probs=94.3
Q ss_pred hcccccccccCCcChHHH--------HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHH
Q 012235 289 DKEKPKWVANRSVPVDFL--------ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIAL 359 (467)
Q Consensus 289 ~~e~~~W~~~~~~~~d~~--------I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~ 359 (467)
.+++..|....+. ++. .+.+.+.+.. ...++|||||.|.++..+..+|+. ++- +|.|..|++.++.
T Consensus 39 qrdrAa~~~d~k~--dylkeeig~rlaDrvfD~kk~-fp~a~diGcs~G~v~rhl~~e~vekli~--~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 39 QRDRAAWLSDQKN--DYLKEEIGDRLADRVFDCKKS-FPTAFDIGCSLGAVKRHLRGEGVEKLIM--MDTSYDMIKSCRD 113 (325)
T ss_pred HHhHHhhcchhhh--hHHHHHHHHHHHHHHHHHhhh-CcceeecccchhhhhHHHHhcchhheee--eecchHHHHHhhc
Confidence 3566667663222 322 3344444432 237899999999999999998764 333 7889999998876
Q ss_pred cC---C-ccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 360 RG---L-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 360 rg---~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.. . ....++|-+.++|.++++|+|+++.++ ||.++ +...+.++...|||+|.|+-+
T Consensus 114 ~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW~Nd--LPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 114 AQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HWTND--LPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred cCCCceEEEEEecchhcccccccchhhhhhhhhh-hhhcc--CchHHHHHHHhcCCCccchhH
Confidence 52 2 457788999999999999999999999 99998 689999999999999998764
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-07 Score=92.34 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=81.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+|||+|||+|.++..++.. +..|++ +|+++.+++.++++ + .+.++.+|... ++++++||+|+++....
T Consensus 117 ~vLDlG~GsG~i~l~la~~~~~~~v~a--vDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 117 HILDLGTGSGCIALALAYEFPNAEVIA--VDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred EEEEEeccHhHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 7999999999999999986 357777 77788888777643 2 26788888654 34445899999973221
Q ss_pred ------------cccch----------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH-HcCceeeEE
Q 012235 391 ------------GWLDM----------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL-QFRYKKHKW 444 (467)
Q Consensus 391 ------------h~~~~----------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~-~~Gf~~l~W 444 (467)
++.+. ..++.++.++.++|+|||++++..... ..+.+.+++. ..||..+..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~---q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW---QQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc---HHHHHHHHHHhcCCCceeEE
Confidence 11110 134678999999999999998855322 2235666666 457765544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.7e-08 Score=98.19 Aligned_cols=100 Identities=21% Similarity=0.142 Sum_probs=73.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lpf~d 377 (467)
+.+.++++++. +|||+|||+|.++..+++.. ..|++ +|.++.+++.+++ .+ .+.++.+|....+...
T Consensus 72 ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~Vvg--VDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~ 147 (322)
T PRK13943 72 FMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVS--VEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF 147 (322)
T ss_pred HHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence 44455666666 89999999999999998762 25777 6777887776654 23 2667788876665555
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
++||+|++...+. .....+.++|+|||.+++..
T Consensus 148 ~~fD~Ii~~~g~~---------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 148 APYDVIFVTVGVD---------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCccEEEECCchH---------HhHHHHHHhcCCCCEEEEEe
Confidence 7899999987662 33445778999999988843
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-07 Score=91.11 Aligned_cols=119 Identities=15% Similarity=0.243 Sum_probs=80.5
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCC-ccCCCccceEEeccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRL-PFFDNTMDLIHTTGF 388 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~L-pf~d~sFDlVis~~~ 388 (467)
++|||||||+|.++..+++. +..+++ +|+++.+++.+++. ..+.++++|+..+ ...+++||+|++...
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~--VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTA--VEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 48999999999999999876 456777 66677888877653 2367888886543 223468999997531
Q ss_pred c-ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 389 M-DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 389 L-~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
- ...........+++++.++|+|||.+++..+... .....+.+.+++. |..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~-~~~~~~l~~l~~~-F~~ 197 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD-KRYDRYLERLESS-FEG 197 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc-hhHHHHHHHHHHh-cCC
Confidence 1 1111111125899999999999999988544322 2234566666666 654
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-07 Score=93.24 Aligned_cols=125 Identities=20% Similarity=0.258 Sum_probs=82.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHc----CCc--cEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALR----GLI--PLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~r----g~i--~~~~~d~~~Lpf~d~ 378 (467)
+.+-+....+. +|||+|||.|.++..+++... .++- +|++..+++.++++ +.- .++.++... +..+
T Consensus 150 Ll~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtm--vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~- 223 (300)
T COG2813 150 LLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTL--VDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG- 223 (300)
T ss_pred HHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEE--EecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-
Confidence 33444444444 799999999999999999965 5555 66777777776543 221 244454333 4434
Q ss_pred ccceEEeccccccccch--hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 379 TMDLIHTTGFMDGWLDM--LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~--~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
+||+|+||-.++.-... ..-..++.+..+.|++||.|+|+.-... .+...+++. |..+.
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l-----~y~~~L~~~-Fg~v~ 284 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL-----PYEKKLKEL-FGNVE 284 (300)
T ss_pred cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC-----ChHHHHHHh-cCCEE
Confidence 99999999999422221 1123789999999999999999764111 355666665 55443
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.9e-08 Score=92.35 Aligned_cols=102 Identities=23% Similarity=0.184 Sum_probs=76.9
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCccCCC
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lpf~d~ 378 (467)
..+.+++.+++++ +|||||||+|+.++.|++..-+|++ ++..+...+.|++ .| ++.+.++|...=--+..
T Consensus 62 A~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~s--iEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 62 ARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVS--IERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEE--EEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 3566788899998 9999999999999999999778988 5555565555544 23 37788888654323358
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.||.|+.+.+... +-..+.+.|||||.+++-.
T Consensus 138 PyD~I~Vtaaa~~---------vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 138 PYDRIIVTAAAPE---------VPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred CcCEEEEeeccCC---------CCHHHHHhcccCCEEEEEE
Confidence 8999999988732 3345678899999999843
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-08 Score=94.56 Aligned_cols=99 Identities=24% Similarity=0.230 Sum_probs=68.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
.+.+.+.++++. +|||||||+|++++.|+.. + ..|++ +|..+...+.++++ + .+.++++|...-.-.
T Consensus 63 ~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~--vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 63 RMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVS--VERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEE--EESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEE--ECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 456777888988 9999999999999999876 3 25777 55556666555432 3 377888886543334
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
...||.|++..+.. ..-..+.+.||+||++++
T Consensus 139 ~apfD~I~v~~a~~---------~ip~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 139 EAPFDRIIVTAAVP---------EIPEALLEQLKPGGRLVA 170 (209)
T ss_dssp G-SEEEEEESSBBS---------S--HHHHHTEEEEEEEEE
T ss_pred CCCcCEEEEeeccc---------hHHHHHHHhcCCCcEEEE
Confidence 57899999998883 234557788999999988
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=99.01 Aligned_cols=119 Identities=15% Similarity=0.143 Sum_probs=82.2
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+|||+|||+|.++..++.. +..|++ +|+++.+++.+.++ + .+.++.+|... ++++++||+|+++....
T Consensus 141 ~VLDlG~GsG~iai~la~~~p~~~v~a--vDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 141 NILELGTGSGCIAISLLCELPNANVIA--TDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred EEEEccCchhHHHHHHHHHCCCCeEEE--EECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 7999999999999988865 567877 67778888777653 2 26677777543 23456899999974321
Q ss_pred c--------------cc------ch---hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 391 G--------------WL------DM---LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 391 h--------------~~------~~---~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
. .+ .. ..+..++.++.++|+|||.+++..- ....+.+.+++...||..+.-
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig---~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG---FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC---CchHHHHHHHHHhcCCCceEE
Confidence 1 00 01 1234578889999999999988532 233447777888888865543
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-07 Score=91.13 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=80.8
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc---CCccEEEccCCCC-cc-CCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR---GLIPLYVTLNQRL-PF-FDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r---g~i~~~~~d~~~L-pf-~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++. +..|++ +|+++.+++.++++ ..+.++.+|.... +. ..+.||+|+++-.....
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~~~~v~~--vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALDGIELHA--ADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred EEEEecCchHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 7999999999999999875 567877 67778888777643 2256788886542 21 13579999998643210
Q ss_pred ------cc-----------------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 393 ------LD-----------------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 393 ------~~-----------------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
.+ .+.++.++..+.++|+|||.+++..- .++...+...+++.||..
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~---~~~~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS---ERQAPLAVEAFARAGLIA 235 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---cchHHHHHHHHHHCCCCc
Confidence 00 01134778888899999999998653 233447777888877643
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-06 Score=82.44 Aligned_cols=126 Identities=19% Similarity=0.139 Sum_probs=88.5
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d 377 (467)
.....|.+.+++ +++|||||+|+.+..++.. ..+|++ +|-.+++++.+.++ + ++.++.+++...--..
T Consensus 25 l~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~A--Ie~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 25 LTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIA--IERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL 100 (187)
T ss_pred HHHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEE--EecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC
Confidence 344556777887 9999999999999999944 456666 67667776665432 2 3667788765432112
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc-eeeEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY-KKHKW 444 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf-~~l~W 444 (467)
.++|.|+....-. ++.+++.+...|||||.++..... -+......+.+++.|+ ..++.
T Consensus 101 ~~~daiFIGGg~~-------i~~ile~~~~~l~~ggrlV~nait--lE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 101 PSPDAIFIGGGGN-------IEEILEAAWERLKPGGRLVANAIT--LETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred CCCCEEEECCCCC-------HHHHHHHHHHHcCcCCeEEEEeec--HHHHHHHHHHHHHcCCceEEEE
Confidence 2799999988741 468999999999999998884322 1233367788899998 44443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=96.73 Aligned_cols=100 Identities=14% Similarity=0.061 Sum_probs=69.6
Q ss_pred ceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHcC----------------CccEEEccCCCC------cc
Q 012235 319 RIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALRG----------------LIPLYVTLNQRL------PF 375 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~rg----------------~i~~~~~d~~~L------pf 375 (467)
.+|||+|||-|.-...+...+ ..++| +|++...++.|.+|- ...++.+|...- +.
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg--~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVG--IDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEE--EES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEE--EeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 389999999998766666664 45777 777888888776542 134567765432 22
Q ss_pred CCCccceEEeccccccc-cchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 376 FDNTMDLIHTTGFMDGW-LDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~-~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
....||+|-|-+++|+. ...+..+.+|..+...|+|||+|+.+++
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 23599999999999433 3555567799999999999999999765
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-06 Score=86.01 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=77.4
Q ss_pred eEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHc----CCcc--EEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALR----GLIP--LYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~r----g~i~--~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|..+..++.... .|++ .|+|+.+++.|+++ +... ++.+|. ++--.++||+|+||-....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a--~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl--f~~~~~~fDlIVsNPPYip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIA--VDISPDALALARENAERNGLVRVLVVQSDL--FEPLRGKFDLIVSNPPYIP 188 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEE--EECCHHHHHHHHHHHHHcCCccEEEEeeec--ccccCCceeEEEeCCCCCC
Confidence 699999999999999999865 7777 67777777776542 3333 333332 2222448999999854321
Q ss_pred cc----------------------chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 392 WL----------------------DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 392 ~~----------------------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
-. .......++.++.+.|+|||.+++-.- .++.+.+.+++.+.|+
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g---~~q~~~v~~~~~~~~~ 255 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG---LTQGEAVKALFEDTGF 255 (280)
T ss_pred CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC---CCcHHHHHHHHHhcCC
Confidence 11 012345788899999999999888442 2334578889999985
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.8e-07 Score=89.18 Aligned_cols=117 Identities=12% Similarity=0.062 Sum_probs=77.9
Q ss_pred CceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCCC-ccCCCccceE
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQRL-PFFDNTMDLI 383 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~L-pf~d~sFDlV 383 (467)
.++|||||||.|..+..++++ + ..|++ +|+++.+++.+++. ..+.++.+|+..+ ...+++||+|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~--VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITL--VEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEE--EeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 348999999999999999887 4 46888 55667777766542 2367888886653 3346789999
Q ss_pred Eeccccccccchhh--HHHHHHHHHhccCCCcEEEEEecc--cCCCCHHHHHHHHHHc
Q 012235 384 HTTGFMDGWLDMLL--LDFILFDWDRILRPGGLLWIDRFF--CNKKDLDDYMYMFLQF 437 (467)
Q Consensus 384 is~~~L~h~~~~~~--l~~~L~el~RvLKPGG~LiI~~~~--~~~~~~~~~~~~i~~~ 437 (467)
++...- ++..... .+.+++.+.++|+|||.+++.... ...+......+.+++.
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~ 211 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV 211 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 997543 3322211 257889999999999998874321 1112222445555555
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-06 Score=82.59 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=88.0
Q ss_pred CceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH-----cCC-ccEEEccCCCCccCCCccceEEeccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL-----RGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~-----rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
..++||.|+|-|..+..+.-. -.+|.- ++..+.+++.|.+ .+. ..+++...+++...++.||+|.+-+++-
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDl--VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDL--VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEE--EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEE--eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 458999999999999977655 445665 6677888888874 222 4677777888766678999999999998
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCC--------C-----CHHHHHHHHHHcCceeeEEEEcc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK--------K-----DLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------~-----~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
|..+.+ +-.+|......|+|+|.+++-+=.... + ..+.+.++++++|++.++=....
T Consensus 134 hLTD~d-lv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 134 HLTDED-LVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp GS-HHH-HHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred cCCHHH-HHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 877765 779999999999999999984322221 1 23489999999999988765443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.2e-06 Score=90.20 Aligned_cols=138 Identities=19% Similarity=0.252 Sum_probs=86.8
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC----CccCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR----LPFFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~----Lpf~d~s 379 (467)
.+...++. +|||+|||+|.++..+++.+..|++ +|+++.|++.+.++ + .+.++.+|+.. +++.+++
T Consensus 292 ~l~~~~~~--~VLDlgcGtG~~sl~la~~~~~V~g--vD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 292 WLDPQPGD--RVLDLFCGLGNFTLPLARQAAEVVG--VEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred HhcCCCCC--EEEEEeccCCHHHHHHHHhCCEEEE--EeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCC
Confidence 34444555 8999999999999999998888888 77888888877643 3 37788888653 3345678
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHHcCceeeEEEEccC--CCCceEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQFRYKKHKWAISPK--SKDEVYL 456 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k--~~devyl 456 (467)
||+|+++-.-.. ....+..+.+ ++|++.++++. +..... ++. .+...||+..+-...+- .-..+=.
T Consensus 368 fD~Vi~dPPr~g------~~~~~~~l~~-~~~~~ivyvSC---np~tlaRDl~-~L~~~gY~l~~i~~~DmFP~T~HvE~ 436 (443)
T PRK13168 368 FDKVLLDPPRAG------AAEVMQALAK-LGPKRIVYVSC---NPATLARDAG-VLVEAGYRLKRAGMLDMFPHTGHVES 436 (443)
T ss_pred CCEEEECcCCcC------hHHHHHHHHh-cCCCeEEEEEe---ChHHhhccHH-HHhhCCcEEEEEEEeccCCCCCcEEE
Confidence 999998765421 1244555555 68999888853 222222 222 33345776554432221 2223434
Q ss_pred EEEeec
Q 012235 457 SALLEK 462 (467)
Q Consensus 457 ~avlqK 462 (467)
.++|+|
T Consensus 437 v~lL~r 442 (443)
T PRK13168 437 MALFER 442 (443)
T ss_pred EEEEEe
Confidence 455554
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=81.91 Aligned_cols=141 Identities=19% Similarity=0.303 Sum_probs=81.5
Q ss_pred HHHhc-CCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHcCCccEEEccCC------CCc--c
Q 012235 308 SDILA-IKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ------RLP--F 375 (467)
Q Consensus 308 ~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~------~Lp--f 375 (467)
.+... +.++...+|||+||++|.|+..+.+++ ..|+++|+....+. ..+..+.+|.. .+. +
T Consensus 13 ~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-------~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 13 DEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-------QNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-------cceeeeecccchhhHHHhhhhhc
Confidence 33344 445444599999999999999999997 67888666543211 11222222211 111 1
Q ss_pred --CCCccceEEeccccc--------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE
Q 012235 376 --FDNTMDLIHTTGFMD--------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 376 --~d~sFDlVis~~~L~--------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
..+.||+|+|..+.. ++.........+.-+...|+|||.+++-.+-.... . .+...+... |..+++.
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~-~-~~~~~l~~~-F~~v~~~ 162 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI-E-ELIYLLKRC-FSKVKIV 162 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS-H-HHHHHHHHH-HHHEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH-H-HHHHHHHhC-CeEEEEE
Confidence 126899999987431 12222222344555567899999999877664443 3 667777765 7878776
Q ss_pred EccC---CCCceEEEE
Q 012235 446 ISPK---SKDEVYLSA 458 (467)
Q Consensus 446 ~~~k---~~devyl~a 458 (467)
.... ...|.|+.+
T Consensus 163 Kp~~sr~~s~E~Ylv~ 178 (181)
T PF01728_consen 163 KPPSSRSESSEEYLVC 178 (181)
T ss_dssp E-TTSBTTCBEEEEES
T ss_pred ECcCCCCCccEEEEEE
Confidence 5543 456778864
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=85.69 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=67.8
Q ss_pred eEEEECCCccHHHHHHhhC-----CCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-----NVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-----g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
+|||+|||+|.++..++++ ...|++ +|+++.+++.+++.- .+.++.+|+...++ +++||+|+++-.+....
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~a--VEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVC--VELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEE--EECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 8999999999999988764 457777 666677888887553 37888999877665 57899999997663111
Q ss_pred ---------chhhHHHHHHHHHhccCCCcEEEE
Q 012235 394 ---------DMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 394 ---------~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
.......++..+.+++++|+. ++
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 111134578888887777665 54
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-06 Score=87.40 Aligned_cols=128 Identities=10% Similarity=-0.027 Sum_probs=84.8
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc-------------CCccEEEccCCCC-ccCCCccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR-------------GLIPLYVTLNQRL-PFFDNTMD 381 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r-------------g~i~~~~~d~~~L-pf~d~sFD 381 (467)
.++||+||||+|..++.+.+.. ..|+. +|+++.+++.|++. ..+.++++|+..+ ...++.||
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~--VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDL--VDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEE--EeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 3489999999999999888874 56777 66668888888741 1367788887653 34467899
Q ss_pred eEEeccccc--cccchhhHHHHHHHHHhccCCCcEEEEEecccC--CCCHHHHHHHHHHcCceeeEEEEc
Q 012235 382 LIHTTGFMD--GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN--KKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 382 lVis~~~L~--h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~--~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
+|++...-. .......-..++..+.+.|+|||.+++..-... ......+.+.+++.|+....+.+.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~ 298 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI 298 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe
Confidence 999885320 111111124689999999999999887532111 111124566778887766655443
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.9e-07 Score=85.76 Aligned_cols=128 Identities=21% Similarity=0.154 Sum_probs=89.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC----CccEEEccCCCC--ccCCCccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG----LIPLYVTLNQRL--PFFDNTMD 381 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg----~i~~~~~d~~~L--pf~d~sFD 381 (467)
.+.+. +|||...|-|+++...+++|. .|+.++.|. ..++.+.. ++ .+.++.+|+.++ .|.|.+||
T Consensus 132 ~~~G~--rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp--~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 132 VKRGE--RVLDTCTGLGYTAIEALERGAIHVITVEKDP--NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cccCC--EeeeeccCccHHHHHHHHcCCcEEEEEeeCC--CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 34466 999999999999999999998 888866663 33443332 22 267888987665 37799999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc----CCCCH-HHHHHHHHHcCceeeEE
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC----NKKDL-DDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~----~~~~~-~~~~~~i~~~Gf~~l~W 444 (467)
+|+-.-.-......-..+.+..|++|+|||||.++--.-.. ..-++ ....+.+++.||..++-
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 99965332222223234689999999999999986633221 12233 38889999999987764
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-06 Score=93.02 Aligned_cols=118 Identities=14% Similarity=0.008 Sum_probs=83.2
Q ss_pred ceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc-------------CCccEEEccCCCC-ccCCCccce
Q 012235 319 RIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR-------------GLIPLYVTLNQRL-PFFDNTMDL 382 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r-------------g~i~~~~~d~~~L-pf~d~sFDl 382 (467)
++|||+|||+|..+..+++++ .+++. +|+++++++.+++. ..++++.+|+.++ ...+++||+
T Consensus 299 ~rVL~IG~G~G~~~~~ll~~~~v~~v~~--VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 299 RRVLVLGGGDGLALREVLKYPDVEQVTL--VDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CeEEEEcCCccHHHHHHHhCCCcCeEEE--EECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 489999999999999998874 47777 66678888888762 2366788887653 233578999
Q ss_pred EEeccccccccc---hhhHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCc
Q 012235 383 IHTTGFMDGWLD---MLLLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 383 Vis~~~L~h~~~---~~~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf 439 (467)
|+++..- +..+ ....+++++.+.+.|||||.+++..... ..+....+.+.+++.||
T Consensus 377 Ii~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 377 IIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 9998643 2211 1111368899999999999998854221 22223367778888888
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=82.70 Aligned_cols=97 Identities=21% Similarity=0.325 Sum_probs=67.2
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHH----HHcC--CccEEEccCCC-Cc--cCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMI----ALRG--LIPLYVTLNQR-LP--FFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a----~~rg--~i~~~~~d~~~-Lp--f~d~sFDlVis~~~ 388 (467)
.+||||||.|.+...+|.. +..++| +|+....+..+ .+++ ++.++.+|+.. ++ ++++++|.|+.++.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iG--iE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIG--IEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEE--EES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEE--EecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 7999999999999999987 566777 66665555444 3334 37788888776 33 55799999999876
Q ss_pred cccccch------hhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDM------LLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~------~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
= .|... -.-..++..+.++|+|||.+.+.+
T Consensus 98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 D-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 5 44421 112479999999999999998854
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.2e-06 Score=82.44 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=88.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf 375 (467)
+|...+++.++. +|||.|.|+|.++..|+.. | -+|++++ +-+...+.|.++ + .+.+..+|....-+
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE--~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYE--IREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEE--ecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 677888999998 9999999999999999964 3 4677744 445566665442 2 26677788777655
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
++ .||.|+... +++ ..++..++.+|+|||.+++..+.. ++.+...+.++..||..+
T Consensus 161 ~~-~vDav~LDm-----p~P---W~~le~~~~~Lkpgg~~~~y~P~v--eQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 161 EE-DVDAVFLDL-----PDP---WNVLEHVSDALKPGGVVVVYSPTV--EQVEKTVEALRERGFVDI 216 (256)
T ss_pred cc-ccCEEEEcC-----CCh---HHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHHHHHhcCccch
Confidence 44 899998644 334 479999999999999988855443 445556666777788443
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-06 Score=83.40 Aligned_cols=106 Identities=14% Similarity=0.079 Sum_probs=73.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCC-c-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRL-P- 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~L-p- 374 (467)
+..+....+.. +|||+|||+|+-+..++.. +..+++ +|.++.+.+.+++ .+ .+.++.+++... +
T Consensus 60 L~~l~~~~~~~--~vLEiGt~~G~s~l~la~~~~~~g~v~t--iD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 60 LSMLVKIMNAK--NTLEIGVFTGYSLLTTALALPEDGRITA--IDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHHhCCC--EEEEecCcccHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence 33444554444 8999999999988777754 357777 5566666665543 23 377888886543 2
Q ss_pred ----cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 375 ----FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 375 ----f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+.++||+|+....- ..+...+..+.+.|||||.+++++..+
T Consensus 136 l~~~~~~~~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HHhCCCCCCCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 124689999886532 124578899999999999999876554
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-06 Score=89.10 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=74.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC------------CccEEEccCC------CCccCCCcc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG------------LIPLYVTLNQ------RLPFFDNTM 380 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg------------~i~~~~~d~~------~Lpf~d~sF 380 (467)
.++|+|||-|+-....-+.|+ .++| +|++...++.+.+|. .+.++.+|.. .+++.+.+|
T Consensus 120 ~~~~LgCGKGGDLlKw~kAgI~~~ig--iDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKAGIGEYIG--IDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccceeccCCcccHhHhhhhcccceEe--eehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 789999999988888777765 4667 777777777776541 1467788753 345566669
Q ss_pred ceEEeccccccc--cchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGW--LDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~--~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+|-|-+++ |+ ...+..+.+|.++.+.|||||+|+-+.
T Consensus 198 DivScQF~~-HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 198 DIVSCQFAF-HYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred ceeeeeeeE-eeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 999999999 54 466667889999999999999987754
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.31 E-value=6e-06 Score=82.44 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=67.4
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-ccCCCccceEE
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-PFFDNTMDLIH 384 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-pf~d~sFDlVi 384 (467)
.++||+||||+|.++..+++.. ..+++ +|+++.+++.+.+. ..+.++.+|+..+ ...+++||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~--veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATL--VDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEE--EeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3489999999999999888774 46777 55566776666542 1255666665432 22257899999
Q ss_pred eccccccccchhh--HHHHHHHHHhccCCCcEEEEE
Q 012235 385 TTGFMDGWLDMLL--LDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 385 s~~~L~h~~~~~~--l~~~L~el~RvLKPGG~LiI~ 418 (467)
+.... +...... ...+++.+.++|+|||.+++.
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 87653 2221111 257889999999999999885
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.4e-06 Score=94.91 Aligned_cols=123 Identities=16% Similarity=0.062 Sum_probs=83.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCCc-cCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRLP-FFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~Lp-f~d~sFDl 382 (467)
+..+. +|||+|||+|.++..++..|. .|++ +|+++.+++.+.++ + .+.++++|+.++- -..++||+
T Consensus 536 ~~~g~--rVLDlf~gtG~~sl~aa~~Ga~~V~~--vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 536 MAKGK--DFLNLFAYTGTASVHAALGGAKSTTT--VDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred hcCCC--eEEEcCCCCCHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCE
Confidence 33454 899999999999999999876 4877 78888888877642 2 2568888865431 12578999
Q ss_pred EEeccccc--------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 383 IHTTGFMD--------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 383 Vis~~~L~--------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
|+++.... .+........++..+.++|+|||.+++.+-...- ..-.+.+.+.|+...
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~---~~~~~~~~~~g~~~~ 676 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF---KMDEEGLAKLGLKAE 676 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC---ChhHHHHHhCCCeEE
Confidence 99975321 1111223467888899999999999886543221 122556666676443
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.3e-06 Score=82.85 Aligned_cols=91 Identities=13% Similarity=0.121 Sum_probs=65.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCcc-CCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPF-FDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf-~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++++..|++ +|.++.+++.++++ + .+.++++|+..+.. .++.||+|+++-.-.
T Consensus 176 ~VLDl~cG~G~~sl~la~~~~~V~g--vD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~-- 251 (315)
T PRK03522 176 SMWDLFCGVGGFGLHCATPGMQLTG--IEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR-- 251 (315)
T ss_pred EEEEccCCCCHHHHHHHhcCCEEEE--EeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC--
Confidence 8999999999999999999988988 67778888776542 3 37789999876542 345799999885421
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
++...+.++..-++|++.++++
T Consensus 252 ----G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 252 ----GIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred ----CccHHHHHHHHHcCCCeEEEEE
Confidence 1112333334447888877773
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-06 Score=79.51 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=62.1
Q ss_pred CCceEEEECCCcc----HHHHHHhhC-----C--CEEEEEecCCCHHHHHHHHH--------------------------
Q 012235 317 ETRIGLDFGVGTG----TFAARMREQ-----N--VTIVSTALNLGAPFNEMIAL-------------------------- 359 (467)
Q Consensus 317 ~~r~VLDIGCGtG----~~a~~La~~-----g--~~V~gvdiDiS~~~l~~a~~-------------------------- 359 (467)
..-+|+.+||++| ++|..+.+. + +.+.| .|++..+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~a--tDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILA--TDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEE--EES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEE--EECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 3347899999999 455555551 2 46667 5666777887753
Q ss_pred --------cCCccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 360 --------RGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 360 --------rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+..+.|...+....+...+.||+|+|..++.++.+. ....++..+++.|+|||+|++.
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~-~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPE-TQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HH-HHHHHHHHHGGGEEEEEEEEE-
T ss_pred ceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHH-HHHHHHHHHHHHcCCCCEEEEe
Confidence 122556666766644456889999999999666544 4689999999999999999994
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.8e-06 Score=86.16 Aligned_cols=113 Identities=15% Similarity=0.003 Sum_probs=75.5
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC----CccEEEccCCCCc--c--CCCccceEEec
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG----LIPLYVTLNQRLP--F--FDNTMDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg----~i~~~~~d~~~Lp--f--~d~sFDlVis~ 386 (467)
+|||+|||+|.++..++..+. .|++ +|+++.+++.+.+ .+ .+.++++|+..+- + ..++||+|+++
T Consensus 223 rVLDlfsgtG~~~l~aa~~ga~~V~~--VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 223 RVLNCFSYTGGFAVSALMGGCSQVVS--VDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred eEEEeccCCCHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 899999999999987766654 7888 6777888777654 23 2568888876542 1 25689999998
Q ss_pred cccccccch-------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH
Q 012235 387 GFMDGWLDM-------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 387 ~~L~h~~~~-------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
..... ... ..+..++....++|+|||.++..+....- +.+.+.+++.+
T Consensus 301 PP~f~-~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~-~~~~f~~~v~~ 355 (396)
T PRK15128 301 PPKFV-ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM-TSDLFQKIIAD 355 (396)
T ss_pred CCCCC-CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC-CHHHHHHHHHH
Confidence 55311 111 12455666788999999999886533222 33455555543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.6e-06 Score=86.43 Aligned_cols=121 Identities=17% Similarity=0.251 Sum_probs=79.1
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCC----ccCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRL----PFFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~L----pf~d~s 379 (467)
.+.+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++.+|+... ++.+++
T Consensus 287 ~l~~~~~~--~vLDl~cG~G~~sl~la~~~~~V~~--vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 287 ALELQGEE--LVVDAYCGVGTFTLPLAKQAKSVVG--IEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HhccCCCC--EEEEcCCCcCHHHHHHHHhCCEEEE--EEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 33444555 8999999999999999988888888 67778887777642 2 377888887542 234568
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
||+|+....-... . ..++..+.+ ++|++.++++ |+......-.+.+...||+...
T Consensus 363 ~D~vi~dPPr~G~-~----~~~l~~l~~-l~~~~ivyvs---c~p~tlard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 363 PDVLLLDPPRKGC-A----AEVLRTIIE-LKPERIVYVS---CNPATLARDLEFLCKEGYGITW 417 (431)
T ss_pred CCEEEECcCCCCC-C----HHHHHHHHh-cCCCEEEEEc---CCHHHHHHHHHHHHHCCeeEEE
Confidence 9999976543111 1 345665554 8899887773 3333333223345556775443
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.6e-06 Score=87.19 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=69.8
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCC-CHHHHHHHHHcCC---ccEEEccCCCCccCCCccceEEecccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNL-GAPFNEMIALRGL---IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDi-S~~~l~~a~~rg~---i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
++|||+|||+|.++...++.|. .|++++... +.-+.+.+..++. ++++.+..+++.+|...+|+|+|-+.-+...
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll 141 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLL 141 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHH
Confidence 3899999999999999999874 578854432 2222333344443 7888888888777778999999976542222
Q ss_pred chhhHHHHHHHHHhccCCCcEEE
Q 012235 394 DMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~Li 416 (467)
-...+..++..=.+.|+|||.++
T Consensus 142 ~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 142 YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HhhhhhhhhhhhhhccCCCceEc
Confidence 23335677888899999999874
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-05 Score=81.92 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=78.9
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCc--cCCCccceE
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLP--FFDNTMDLI 383 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lp--f~d~sFDlV 383 (467)
.++||+||||.|..+..+++.. ..|+. +|+.+.+++.+++. ..+.++.+|+..+- .+++.||+|
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~--VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDI--CEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEE--EECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3589999999999999999872 35666 45556666666542 23778888865431 235789999
Q ss_pred Eeccccccccchh--hHHHHHHHHHhccCCCcEEEEEe--cccCCCCHHHHHHHHHHcCc-eeeEE
Q 012235 384 HTTGFMDGWLDML--LLDFILFDWDRILRPGGLLWIDR--FFCNKKDLDDYMYMFLQFRY-KKHKW 444 (467)
Q Consensus 384 is~~~L~h~~~~~--~l~~~L~el~RvLKPGG~LiI~~--~~~~~~~~~~~~~~i~~~Gf-~~l~W 444 (467)
++...- ++.... ....+++.+.++|+|||.+++.. ++...+....+.+.+... | ..+.+
T Consensus 170 i~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~-F~~~v~~ 233 (308)
T PLN02366 170 IVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET-FKGSVNY 233 (308)
T ss_pred EEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH-CCCceeE
Confidence 986543 222111 12468999999999999987732 222222233555566666 4 34443
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=80.03 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=61.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+.+.+++.++. +|||||||+|.++..+++++..+++ +|+++.+++.+.++ +.+.++++|+..++++ .||.
T Consensus 21 iv~~~~~~~~~--~VLEIG~G~G~lt~~L~~~~~~v~~--vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~ 94 (258)
T PRK14896 21 IVEYAEDTDGD--PVLEIGPGKGALTDELAKRAKKVYA--IELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNK 94 (258)
T ss_pred HHHhcCCCCcC--eEEEEeCccCHHHHHHHHhCCEEEE--EECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceE
Confidence 33444555565 8999999999999999999888888 56667777777653 3478899999888764 4899
Q ss_pred EEecccccccc
Q 012235 383 IHTTGFMDGWL 393 (467)
Q Consensus 383 Vis~~~L~h~~ 393 (467)
|+++... +..
T Consensus 95 Vv~NlPy-~i~ 104 (258)
T PRK14896 95 VVSNLPY-QIS 104 (258)
T ss_pred EEEcCCc-ccC
Confidence 9998876 544
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.4e-06 Score=82.81 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=69.1
Q ss_pred eEEEECCCcc----HHHHHHhhC------CCEEEEEecCCCHHHHHHHHHc-----------------------------
Q 012235 320 IGLDFGVGTG----TFAARMREQ------NVTIVSTALNLGAPFNEMIALR----------------------------- 360 (467)
Q Consensus 320 ~VLDIGCGtG----~~a~~La~~------g~~V~gvdiDiS~~~l~~a~~r----------------------------- 360 (467)
+|+..||+|| ++|..+.+. .+.|+| .|++..+++.|++-
T Consensus 118 rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~a--tDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 118 RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFA--SDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred EEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEE--EECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 7899999999 444444442 356777 56667777766431
Q ss_pred --------CCccEEEccCCCCccC-CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 361 --------GLIPLYVTLNQRLPFF-DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 361 --------g~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..|.|.+.|....+++ .+.||+|+|..++.|+.+. ....++..+.+.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~-~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT-TQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH-HHHHHHHHHHHHhCCCcEEEEeC
Confidence 1134555665554433 5789999999999777554 46899999999999999998843
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.3e-06 Score=80.75 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=84.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf 375 (467)
+|...+++.+|+ +|||.|.|+|.++..|+.. .-.|++ .+..++..+.|.++ + .+.+.+.|...-.|
T Consensus 31 ~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t--~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 31 YILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYT--YEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEE--EESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred HHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEc--cccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 577788999998 9999999999999999875 346887 45556666666542 3 37788888754333
Q ss_pred C---CCccceEEeccccccccchhhHHHHHHHHHhcc-CCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 376 F---DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRIL-RPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 376 ~---d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvL-KPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
. ++.+|.|+....- + -.++..+.++| ||||.+++-.+.. ++.....+.+++.||..+.
T Consensus 107 ~~~~~~~~DavfLDlp~-----P---w~~i~~~~~~L~~~gG~i~~fsP~i--eQv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 107 DEELESDFDAVFLDLPD-----P---WEAIPHAKRALKKPGGRICCFSPCI--EQVQKTVEALREHGFTDIE 168 (247)
T ss_dssp STT-TTSEEEEEEESSS-----G---GGGHHHHHHHE-EEEEEEEEEESSH--HHHHHHHHHHHHTTEEEEE
T ss_pred cccccCcccEEEEeCCC-----H---HHHHHHHHHHHhcCCceEEEECCCH--HHHHHHHHHHHHCCCeeeE
Confidence 2 3679999865433 3 25888999999 9999988855443 3455677788888996553
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.7e-06 Score=80.08 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=56.2
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHH-HHHcCCcc-EEEccCCCCc-----cCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEM-IALRGLIP-LYVTLNQRLP-----FFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~-a~~rg~i~-~~~~d~~~Lp-----f~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.|+..++++|. .|++ +|++..|+.. .++...+. +...++..+. ..-..+|+++++..+
T Consensus 78 ~vlDiG~gtG~~t~~l~~~ga~~v~a--vD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~-- 153 (228)
T TIGR00478 78 IVLDVGSSTGGFTDCALQKGAKEVYG--VDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS-- 153 (228)
T ss_pred EEEEcccCCCHHHHHHHHcCCCEEEE--EeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh--
Confidence 899999999999999999964 6888 7777766665 33332222 2233433222 111356766665554
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
.+..+.+.|+| |.+++
T Consensus 154 ---------~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 154 ---------ILPELDLLLNP-NDLTL 169 (228)
T ss_pred ---------HHHHHHHHhCc-CeEEE
Confidence 58889999999 77665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=79.61 Aligned_cols=78 Identities=8% Similarity=0.162 Sum_probs=58.6
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccc---
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMD--- 381 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFD--- 381 (467)
+.+...+++ +|||||||+|.++..|++++..+++ +|.++.+++.+..+ +.+.++.+|+..++++ .+|
T Consensus 23 ~~~~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~~--iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~ 96 (253)
T TIGR00755 23 EAANVLEGD--VVLEIGPGLGALTEPLLKRAKKVTA--IEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQL 96 (253)
T ss_pred HhcCCCCcC--EEEEeCCCCCHHHHHHHHhCCcEEE--EECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcc
Confidence 334445555 8999999999999999999888888 55566777776643 3477889999888764 566
Q ss_pred eEEecccccccc
Q 012235 382 LIHTTGFMDGWL 393 (467)
Q Consensus 382 lVis~~~L~h~~ 393 (467)
+|+++..+ |+.
T Consensus 97 ~vvsNlPy-~i~ 107 (253)
T TIGR00755 97 KVVSNLPY-NIS 107 (253)
T ss_pred eEEEcCCh-hhH
Confidence 88888766 544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.2e-05 Score=70.13 Aligned_cols=122 Identities=15% Similarity=0.171 Sum_probs=81.6
Q ss_pred CceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHH----HHcC-CccEEEccCCCCccCCCccceEEecccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMI----ALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a----~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
...+||||||+|..+..|++. +..++.+..|+++.+.+.. ..++ .+..++.|...- ...++.|+++.+.....
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 348999999999999999887 4444444466666665543 3232 266777775432 23489999998754321
Q ss_pred --------------cc----chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 392 --------------WL----DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 392 --------------~~----~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
|. ..+-...++..+..+|.|.|.|++.... ++.++++.++++..||...
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~--~N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR--ANKPKEILKILEKKGYGVR 189 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh--hcCHHHHHHHHhhccccee
Confidence 21 1112457788888999999999996544 4456678888888888543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-06 Score=85.53 Aligned_cols=110 Identities=20% Similarity=0.255 Sum_probs=83.9
Q ss_pred HHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEe
Q 012235 307 ISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 307 I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
..+++. ...+. .++|+|||.|-+...= -..-+++ .|.+...+.-+++.+......+|+..+|+.+.+||.+++
T Consensus 36 v~qfl~~~~~gs--v~~d~gCGngky~~~~--p~~~~ig--~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 36 VRQFLDSQPTGS--VGLDVGCGNGKYLGVN--PLCLIIG--CDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred HHHHHhccCCcc--eeeecccCCcccCcCC--Ccceeee--cchhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence 344444 34455 8999999999653311 1223444 777777766666666446888999999999999999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..+++|+........+++|+.|+|||||...+..+..
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 9999999888778899999999999999987755443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.3e-06 Score=82.97 Aligned_cols=79 Identities=13% Similarity=0.187 Sum_probs=60.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc---CCccEEEccCCCCccCCCccceE
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR---GLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r---g~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
+.+.+.+.++. +|||+|||+|.++..+++++.+|++ +|+++.|++.+.++ ..+.++++|+..+++++-.+|.|
T Consensus 34 i~~~l~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~a--vE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 34 IVDAAGPQPGD--NVLEIGPGLGALTEPLLERAAKVTA--VEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred HHHhcCCCCcC--eEEEeCCCccHHHHHHHHhCCcEEE--EECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceE
Confidence 33444555565 8999999999999999999888888 56667888887654 35889999999887654336899
Q ss_pred Eecccc
Q 012235 384 HTTGFM 389 (467)
Q Consensus 384 is~~~L 389 (467)
+++...
T Consensus 110 v~NlPY 115 (272)
T PRK00274 110 VANLPY 115 (272)
T ss_pred EEeCCc
Confidence 988765
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-05 Score=64.71 Aligned_cols=97 Identities=28% Similarity=0.428 Sum_probs=68.8
Q ss_pred EEEECCCccHHH--HHHhhCCCEEEEEecCCCHHHHHHHHHcC--C----ccEEEccCCC--CccCC-CccceEEecccc
Q 012235 321 GLDFGVGTGTFA--ARMREQNVTIVSTALNLGAPFNEMIALRG--L----IPLYVTLNQR--LPFFD-NTMDLIHTTGFM 389 (467)
Q Consensus 321 VLDIGCGtG~~a--~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~----i~~~~~d~~~--Lpf~d-~sFDlVis~~~L 389 (467)
++|+|||+|... ..+...+..+++ +|.+..++....... . +.+..++... +++.+ ..||++ +....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG--VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE--EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 899999999854 333333346777 788887776643322 1 3567777665 77777 489999 65555
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
.++.. ....+.++.++|+|+|.+++......
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 45555 36899999999999999999776543
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-05 Score=79.00 Aligned_cols=99 Identities=25% Similarity=0.300 Sum_probs=69.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHH----HHHHHHcCC--ccEEEccCCCCc---cCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPF----NEMIALRGL--IPLYVTLNQRLP---FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~----l~~a~~rg~--i~~~~~d~~~Lp---f~d~sFDlVis~~~L~ 390 (467)
.+||||||.|.+...+|+++.++.-+++++.... ++.+.+.+. +.++..|+..+- +++++.|-|+.++.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD- 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD- 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC-
Confidence 8999999999999999999554333335544433 344444443 677777765542 445699999998865
Q ss_pred cccc------hhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 391 GWLD------MLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 391 h~~~------~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.|.. .-....++..+.++|+|||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5542 2222479999999999999999944
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=93.08 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=82.6
Q ss_pred eEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------------------CCccEEEccCCCCcc
Q 012235 320 IGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------------------GLIPLYVTLNQRLPF 375 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------------------g~i~~~~~d~~~Lpf 375 (467)
+|||+|||+|.++..+++.. ..|++ +|+++.+++.+.++ ..+.++++|.....-
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~~~v~a--vDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLPSKVYG--LDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 79999999999999999873 56777 77888887776432 136788888654321
Q ss_pred C-CCccceEEeccccccc-------------------------c-------chh---hHHHHHHHHHhccCCCcEEEEEe
Q 012235 376 F-DNTMDLIHTTGFMDGW-------------------------L-------DML---LLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 376 ~-d~sFDlVis~~~L~h~-------------------------~-------~~~---~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
. ...||+|+|+-....- . +.. -++.++.+..++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 2369999998542100 0 011 12567888999999999988744
Q ss_pred cccCCCCHHHHH-HHHHHcCcee-eEEEEc
Q 012235 420 FFCNKKDLDDYM-YMFLQFRYKK-HKWAIS 447 (467)
Q Consensus 420 ~~~~~~~~~~~~-~~i~~~Gf~~-l~W~~~ 447 (467)
-. ..-+.+. +++++.||+. ..|...
T Consensus 279 G~---~q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 279 GG---RPGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred Cc---cHHHHHHHHHHHHCCCCeeEEeeeh
Confidence 22 2223666 5888889866 456543
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-05 Score=76.34 Aligned_cols=96 Identities=16% Similarity=0.265 Sum_probs=64.4
Q ss_pred ceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCC--------cc------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGL--------IP------------------------ 364 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~--------i~------------------------ 364 (467)
..+|||||..|.++..+++. + -.+.| +|+.+..++.|.+.-. +.
T Consensus 60 ~~~LDIGCNsG~lt~~iak~F~~r~iLG--vDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 60 KQALDIGCNSGFLTLSIAKDFGPRRILG--VDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred ceeEeccCCcchhHHHHHHhhccceeeE--eeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 36899999999999999987 4 34777 5555666777754210 00
Q ss_pred --------------EEEccCCCCccCCCccceEEecccc----ccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 365 --------------LYVTLNQRLPFFDNTMDLIHTTGFM----DGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 365 --------------~~~~d~~~Lpf~d~sFDlVis~~~L----~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
++....+-+.+....||+|+|..+- -+|. ++++..++..+.+.|.|||+|++
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwg-D~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWG-DDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccc-cHHHHHHHHHHHHhhCcCcEEEE
Confidence 0000001112335679999986543 1333 44688999999999999999998
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.1e-05 Score=78.74 Aligned_cols=126 Identities=19% Similarity=0.199 Sum_probs=92.1
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC--ccEEEc-cCCCCccCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL--IPLYVT-LNQRLPFFDNT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~-d~~~Lpf~d~s 379 (467)
+.++...++|+ .|||==||||++.....-.|..++| .|+...|++-+..+ +. ..++.. |+..+|+++++
T Consensus 189 mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG--~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 189 MVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIG--SDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHhccccCC--EeecCcCCccHHHHhhhhcCceEee--cchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCc
Confidence 44555677887 8999999999999999988999999 56667777766543 21 334544 99999998889
Q ss_pred cceEEeccccc-----cccc-hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 380 MDLIHTTGFMD-----GWLD-MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 380 FDlVis~~~L~-----h~~~-~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
+|.|++....- .-.. ++.+..+++.+.++||+||++++..+.. ........||+.+.
T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~-------~~~~~~~~~f~v~~ 327 (347)
T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD-------PRHELEELGFKVLG 327 (347)
T ss_pred cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------chhhHhhcCceEEE
Confidence 99999864331 1111 3346789999999999999999976622 22445667786654
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.7e-05 Score=79.65 Aligned_cols=91 Identities=10% Similarity=0.062 Sum_probs=65.1
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCcc-CCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPF-FDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf-~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..++.++..|++ +|+++.+++.++++ + .+.++.+|+..+.. ..++||+|+.+-.-...
T Consensus 236 ~vLDL~cG~G~~~l~la~~~~~v~~--vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAGPDTQLTG--IEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred EEEEccCCccHHHHHHhhcCCeEEE--EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 8999999999999999988888988 66667777766542 3 36788888765431 22469999998664211
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
. ..++..+. .++|++.++++
T Consensus 314 ~-----~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 314 G-----KELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred c-----HHHHHHHH-hcCCCeEEEEE
Confidence 1 24455554 47999988884
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.5e-05 Score=73.94 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=63.3
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCC-ccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRL-PFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~L-pf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..++.+ ...|++ +|.++.+.+.+.+ .+ .+.++.+|+... +...++||+|+++-....
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a~~V~~--vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYAAGATL--LEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC
Confidence 8999999999999865555 467888 5556666655543 23 266788876542 223457999999987522
Q ss_pred ccchhhHHHHHHHHHh--ccCCCcEEEEEec
Q 012235 392 WLDMLLLDFILFDWDR--ILRPGGLLWIDRF 420 (467)
Q Consensus 392 ~~~~~~l~~~L~el~R--vLKPGG~LiI~~~ 420 (467)
-. .+.++..+.. +|+|+|.+++.+.
T Consensus 134 g~----~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 134 GL----LEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred Ch----HHHHHHHHHHCCCcCCCcEEEEEec
Confidence 11 2345555544 4899999888654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=85.21 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=63.3
Q ss_pred ceEEEECCCccHHHHHHhhCC------CEEEEEecCCCHHHHHHH----HHc---CCccEEEccCCCCccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQN------VTIVSTALNLGAPFNEMI----ALR---GLIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g------~~V~gvdiDiS~~~l~~a----~~r---g~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.+|||+|||+|.++...++.+ ..|++++- ++.+.... +.. +.|.++.+|++.+..+ ..+|+|+|
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEk--n~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEK--NPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEES--STHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcC--CHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 479999999999886665553 67888544 44333222 333 3489999999999874 48999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
-..= .+...+.....|....|.|||||.++
T Consensus 265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 6543 34455556678999999999999864
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.5e-05 Score=72.03 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=65.3
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-C-----CccEEEc-cCCCC--c-cCCCccceEEec
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-G-----LIPLYVT-LNQRL--P-FFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-g-----~i~~~~~-d~~~L--p-f~d~sFDlVis~ 386 (467)
++|||+|||+|..+..++.. +..|+.+|.+..-+.++...+. + .+.+..- |.... . ...+.||+|+++
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ilas 126 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILAS 126 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEE
T ss_pred ceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEe
Confidence 38999999999999999888 6789998877532333322222 1 2334332 33322 1 235689999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL 435 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~ 435 (467)
.+++. . ...+.++.-+.++|+|+|.+++...... +....+.++++
T Consensus 127 Dv~Y~-~--~~~~~L~~tl~~ll~~~~~vl~~~~~R~-~~~~~F~~~~~ 171 (173)
T PF10294_consen 127 DVLYD-E--ELFEPLVRTLKRLLKPNGKVLLAYKRRR-KSEQEFFDRLK 171 (173)
T ss_dssp S--S--G--GGHHHHHHHHHHHBTT-TTEEEEEE-S--TGGCHHHHHH-
T ss_pred cccch-H--HHHHHHHHHHHHHhCCCCEEEEEeCEec-HHHHHHHHHhh
Confidence 99953 2 3357899999999999999777654442 22235666554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.9e-05 Score=71.33 Aligned_cols=136 Identities=20% Similarity=0.231 Sum_probs=89.4
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------cCCCccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP--------FFDNTMD 381 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp--------f~d~sFD 381 (467)
+.++. .|+|+|+-.|.++..++++ +..|+++|++...+. ..+.++++|+..-+ +....+|
T Consensus 43 ~~~~~--~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-------~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 43 FKPGM--VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-------PGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred ecCCC--EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-------CCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 44555 8999999999999999887 334899777643321 12677788765443 2334579
Q ss_pred eEEecccc--------ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccC---C
Q 012235 382 LIHTTGFM--------DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPK---S 450 (467)
Q Consensus 382 lVis~~~L--------~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k---~ 450 (467)
+|+|..+. .|.........++.-...+|+|||.|++-.|-. ++.+.+...+++. |+.++-....- .
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg--~~~~~~l~~~~~~-F~~v~~~KP~aSR~~ 190 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG--EDFEDLLKALRRL-FRKVKIFKPKASRKR 190 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC--CCHHHHHHHHHHh-hceeEEecCccccCC
Confidence 99987655 333333323456666778999999999977654 3445677777766 77766543322 3
Q ss_pred CCceEEEEEe
Q 012235 451 KDEVYLSALL 460 (467)
Q Consensus 451 ~devyl~avl 460 (467)
..|+|+.+.-
T Consensus 191 S~E~y~v~~~ 200 (205)
T COG0293 191 SREIYLVAKG 200 (205)
T ss_pred CceEEEEEec
Confidence 4478887644
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.6e-05 Score=76.09 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=74.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCC-Cc-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQR-LP- 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~-Lp- 374 (467)
+..++...... +|||||+|+|+.+.+++.. +..+++ +|.++...+.+++ .| .+.++.+++.. ++
T Consensus 110 L~~L~~~~~ak--~VLEIGT~tGySal~lA~al~~~G~V~T--iE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 110 LAMLVQILGAE--RCIEVGVYTGYSSLAVALVLPESGCLVA--CERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHhcCCC--eEEEecCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence 34444554444 8999999999999999874 345777 5555555555532 33 37788888643 22
Q ss_pred c----CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 375 F----FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 375 f----~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+ ..++||+|+....- ......+..+.+.|+|||.+++++..+..
T Consensus 186 l~~~~~~~~FD~VFIDa~K------~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G 233 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDADK------RMYQDYFELLLQLVRVGGVIVMDNVLWHG 233 (278)
T ss_pred HHhcccCCCCCEEEECCCH------HHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence 1 14689999976542 22467889999999999999998766544
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00025 Score=76.35 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=80.7
Q ss_pred HHHHh--cCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcCC--ccEEEccCCCCc-
Q 012235 307 ISDIL--AIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRGL--IPLYVTLNQRLP- 374 (467)
Q Consensus 307 I~~lL--~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg~--i~~~~~d~~~Lp- 374 (467)
...++ ...+++ +|||+++|.|.=+..+++. ...+++ .|+++..++.+. +-|. +.+...|...++
T Consensus 103 ~~~~L~~~~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~lvA--~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~ 178 (470)
T PRK11933 103 PVAALFADDNAPQ--RVLDMAAAPGSKTTQIAALMNNQGAIVA--NEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA 178 (470)
T ss_pred HHHHhccCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh
Confidence 34455 556776 8999999999988888876 236777 555555444443 2343 455566766553
Q ss_pred cCCCccceEE----ecc--ccc-------cccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHH
Q 012235 375 FFDNTMDLIH----TTG--FMD-------GWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMF 434 (467)
Q Consensus 375 f~d~sFDlVi----s~~--~L~-------h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i 434 (467)
...+.||.|+ |+. ++. .|... ..-..+|..+.+.|||||+++.++.....++.+ .+..++
T Consensus 179 ~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L 258 (470)
T PRK11933 179 ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLK 258 (470)
T ss_pred hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3356899999 432 121 12111 011478889999999999999988776655544 444455
Q ss_pred HHc
Q 012235 435 LQF 437 (467)
Q Consensus 435 ~~~ 437 (467)
++.
T Consensus 259 ~~~ 261 (470)
T PRK11933 259 ETY 261 (470)
T ss_pred HHC
Confidence 554
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.8e-05 Score=76.58 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=61.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~s 379 (467)
|.+.+.+.+++ +|||||||+|.++..+++.+..|++ +|+++.+++.+.++ +.+.++.+|+...++ ..
T Consensus 28 Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~V~a--vEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~ 101 (294)
T PTZ00338 28 IVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKKVIA--IEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PY 101 (294)
T ss_pred HHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCcEEE--EECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cc
Confidence 33444566665 8999999999999999999888988 55667777766542 347889999877654 46
Q ss_pred cceEEeccccccccch
Q 012235 380 MDLIHTTGFMDGWLDM 395 (467)
Q Consensus 380 FDlVis~~~L~h~~~~ 395 (467)
||.|+++... ++..+
T Consensus 102 ~d~VvaNlPY-~Istp 116 (294)
T PTZ00338 102 FDVCVANVPY-QISSP 116 (294)
T ss_pred cCEEEecCCc-ccCcH
Confidence 8999998776 66655
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.6e-05 Score=73.27 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=71.6
Q ss_pred HHHhc--CCCCCCceEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHH----------------HcCCccE
Q 012235 308 SDILA--IKPGETRIGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIA----------------LRGLIPL 365 (467)
Q Consensus 308 ~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~----------------~rg~i~~ 365 (467)
.+.|. +.+|- ..||+|.|+|+++..++.. |..++| ++.-++.++... +++.+.+
T Consensus 73 le~L~~~L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~G--IEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 73 LEYLDDHLQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHG--IEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHhhccCc--ceeecCCCccHHHHHHHHHhcCCCccccc--hhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 34444 66776 8899999999998877743 444466 555454444432 2345678
Q ss_pred EEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 366 YVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 366 ~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+++|....--+...||.|++.... ....+++...|+|||.+++
T Consensus 149 vvGDgr~g~~e~a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 149 VVGDGRKGYAEQAPYDAIHVGAAA---------SELPQELLDQLKPGGRLLI 191 (237)
T ss_pred EeCCccccCCccCCcceEEEccCc---------cccHHHHHHhhccCCeEEE
Confidence 899988877778899999998665 3677888899999999998
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00027 Score=72.57 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=72.7
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----c-CC---ccEEE-ccCCCCc----cCCCccceE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----R-GL---IPLYV-TLNQRLP----FFDNTMDLI 383 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----r-g~---i~~~~-~d~~~Lp----f~d~sFDlV 383 (467)
.+|||||||+|.+...++.+ +..++++| +++.+++.|++ . +. +.+.+ .+...+. .+++.||+|
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atD--Id~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSD--IDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEe--CCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 48999999999888777765 77888854 55666666543 2 22 44433 2322221 236789999
Q ss_pred EeccccccccchhhH---HHHHHH----------------HHhccCCCcEEEEE------------------ecccCCCC
Q 012235 384 HTTGFMDGWLDMLLL---DFILFD----------------WDRILRPGGLLWID------------------RFFCNKKD 426 (467)
Q Consensus 384 is~~~L~h~~~~~~l---~~~L~e----------------l~RvLKPGG~LiI~------------------~~~~~~~~ 426 (467)
+|+-.++ -...+.. ..-... ..+++.+||.+.+. ++....+.
T Consensus 194 vcNPPf~-~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~ 272 (321)
T PRK11727 194 LCNPPFH-ASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKEN 272 (321)
T ss_pred EeCCCCc-CcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCC
Confidence 9998873 2222100 011111 23445678877443 44445557
Q ss_pred HHHHHHHHHHcCceee
Q 012235 427 LDDYMYMFLQFRYKKH 442 (467)
Q Consensus 427 ~~~~~~~i~~~Gf~~l 442 (467)
+..+.+.+++.|...+
T Consensus 273 l~~l~~~L~~~~~~~~ 288 (321)
T PRK11727 273 LPPLYRALKKVGAVEV 288 (321)
T ss_pred HHHHHHHHHHcCCceE
Confidence 7788888888888444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00012 Score=66.13 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=67.6
Q ss_pred ceEEEECCCccH-HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC-CCccceEEeccccccccchh
Q 012235 319 RIGLDFGVGTGT-FAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF-DNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 319 r~VLDIGCGtG~-~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~~~~~ 396 (467)
.++||||||+|. ++..|++.|.+|++ +|+++.+++.+++.+ +.++.+|..+-++. -+.+|+|.+.....
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~Via--IDi~~~aV~~a~~~~-~~~v~dDlf~p~~~~y~~a~liysirpp~------ 88 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIV--IDINEKAVEKAKKLG-LNAFVDDLFNPNLEIYKNAKLIYSIRPPR------ 88 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEE--EECCHHHHHHHHHhC-CeEEECcCCCCCHHHHhcCCEEEEeCCCH------
Confidence 379999999996 99999999999999 666677788887776 68889987765532 36799999988762
Q ss_pred hHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+...+.++.+-+ |.-++|..+..
T Consensus 89 el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 89 DLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred HHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 1334555555543 45566655443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.4e-05 Score=72.73 Aligned_cols=109 Identities=20% Similarity=0.227 Sum_probs=77.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----CC---ccEEE-ccCCC-C
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----GL---IPLYV-TLNQR-L 373 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g~---i~~~~-~d~~~-L 373 (467)
++..++...... +||+||.+.|+-+.+|+.. ..++++ +|..+++.+.|++. |. +.++. +|+.+ +
T Consensus 50 ~L~~L~~~~~~k--~iLEiGT~~GySal~mA~~l~~~g~l~t--iE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 50 LLRLLARLSGPK--RILEIGTAIGYSALWMALALPDDGRLTT--IERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred HHHHHHHhcCCc--eEEEeecccCHHHHHHHhhCCCCCeEEE--EeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 455555555444 8999999999999999876 345666 66667777776542 32 55666 35322 2
Q ss_pred c-cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 374 P-FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 374 p-f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
. ...++||+|+....-. . ...++..+.+.|+|||.++++....+.
T Consensus 126 ~~~~~~~fDliFIDadK~----~--yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 126 SRLLDGSFDLVFIDADKA----D--YPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred HhccCCCccEEEEeCChh----h--CHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 2 4579999999765442 2 357899999999999999998776653
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.7e-05 Score=74.16 Aligned_cols=97 Identities=19% Similarity=0.173 Sum_probs=69.8
Q ss_pred ceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcC---CccEEEccCCCC-c-----cCCCccce
Q 012235 319 RIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRG---LIPLYVTLNQRL-P-----FFDNTMDL 382 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg---~i~~~~~d~~~L-p-----f~d~sFDl 382 (467)
++||+||+++|+-+.+|++. +.+++++ |..+...+.|+ +.| .+.++.+++... + ...++||+
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~ti--E~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTI--EIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEE--ESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEe--cCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 38999999999999999975 5688884 45555555553 223 478899886432 2 11358999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
|+....-. .....+..+.+.|+|||.+++++....
T Consensus 125 VFiDa~K~------~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 125 VFIDADKR------NYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp EEEESTGG------GHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred EEEccccc------chhhHHHHHhhhccCCeEEEEcccccc
Confidence 99876542 245678888999999999999876653
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=68.15 Aligned_cols=101 Identities=15% Similarity=0.017 Sum_probs=81.1
Q ss_pred ceEEEECCCccHHHHHHhhCCCE---EEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCc-----cCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVT---IVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLP-----FFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~---V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lp-----f~d~sFDlVis~~~L 389 (467)
.-||++|.|||.++.++.++|+. +++ ++.+.+......+... +.++.+|+.++. +.+..||.|+|...+
T Consensus 50 lpVlElGPGTGV~TkaIL~~gv~~~~L~~--iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 50 LPVLELGPGTGVITKAILSRGVRPESLTA--IEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred CeeEEEcCCccHhHHHHHhcCCCccceEE--EEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 37999999999999999999753 455 7778888888877643 778889887775 557789999998887
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..++... .-.+++++...|++||.++-.++..
T Consensus 128 l~~P~~~-~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 128 LNFPMHR-RIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccCcHHH-HHHHHHHHHHhcCCCCeEEEEEecC
Confidence 6666553 3578999999999999999877763
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=70.78 Aligned_cols=118 Identities=15% Similarity=0.092 Sum_probs=85.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc---CCCccceEEeccccccccchh
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF---FDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf---~d~sFDlVis~~~L~h~~~~~ 396 (467)
++|||||=+......-. .-..|+.+|++... -.+.+.|....|. +.+.||+|.++.+|...+++.
T Consensus 54 rlLEVGals~~N~~s~~-~~fdvt~IDLns~~-----------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 54 RLLEVGALSTDNACSTS-GWFDVTRIDLNSQH-----------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred eEEeecccCCCCccccc-CceeeEEeecCCCC-----------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 78999987654433221 13457776665322 3566777777665 367899999999997777777
Q ss_pred hHHHHHHHHHhccCCCcE-----EEEEeccc-CCC----CHHHHHHHHHHcCceeeEEEEccC
Q 012235 397 LLDFILFDWDRILRPGGL-----LWIDRFFC-NKK----DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~-----LiI~~~~~-~~~----~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
..-..+..+.+.|+|+|. |+++.+.. ..+ +.+.+.++++.+||..++-....|
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 777899999999999999 88876543 222 345889999999999988765544
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00048 Score=68.78 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=69.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------CCccEEEcc-----CCCCccCCCccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTL-----NQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d-----~~~Lpf~d~sFDlVis~~ 387 (467)
.+||+|||+|..+..++..-.+++.+++|.|+.++..+.++ |.+.+++-+ ....+...+.+|+++||-
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 79999999999999998773344445588888888777543 445555332 233345679999999985
Q ss_pred cccccc-----------------------chhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 388 FMDGWL-----------------------DMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 388 ~L~h~~-----------------------~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
....-. ..+.+..++.-+.|.|+|||.+++..-..
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 432100 01123356677889999999999865433
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00026 Score=70.93 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=69.0
Q ss_pred HHhcCCCCCCceEEEECCCcc----HHHHHHhhC-------CCEEEEEecCCCHHHHHHHHH---------c--------
Q 012235 309 DILAIKPGETRIGLDFGVGTG----TFAARMREQ-------NVTIVSTALNLGAPFNEMIAL---------R-------- 360 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG----~~a~~La~~-------g~~V~gvdiDiS~~~l~~a~~---------r-------- 360 (467)
.++....+..-+|+-+||+|| ++|..|.+. .+.|.++| ++..+++.|.. +
T Consensus 88 ~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtD--Id~~~L~~A~~G~Y~~~~~~~~~~~~~~~ 165 (268)
T COG1352 88 ELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATD--IDLSVLEKARAGIYPSRELLRGLPPELLR 165 (268)
T ss_pred HHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEE--CCHHHHHHHhcCCCChhHhhccCCHHHHh
Confidence 344333323347899999999 444444444 25566754 55556665532 1
Q ss_pred ------------------CCccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 361 ------------------GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 361 ------------------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
..|.|...+...-++..+.||+|+|-.++..+..+ ....++..++..|+|||+|++.
T Consensus 166 ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~-~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 166 RYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEE-TQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred hhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHH-HHHHHHHHHHHHhCCCCEEEEc
Confidence 11334444433333356789999999999555444 4589999999999999999994
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.6e-05 Score=78.80 Aligned_cols=101 Identities=24% Similarity=0.276 Sum_probs=78.6
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH-------cCCccEEEccCCCCccCCCccceE
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL-------RGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~-------rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
...++. .++|+|||.|.....++.. +..++| ++.++........ .....++.+|....|+++++||.|
T Consensus 107 ~~~~~~--~~~~~~~g~~~~~~~i~~f~~~~~~G--l~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 107 SCFPGS--KVLDVGTGVGGPSRYIAVFKKAGVVG--LDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred cCcccc--cccccCcCcCchhHHHHHhccCCccC--CCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcE
Confidence 355665 6899999999999999876 466777 6666543333221 122446888999999999999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+..+..|..+. ..++.|++|+++|||+++..+
T Consensus 183 ~~ld~~~~~~~~---~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 183 RFLEVVCHAPDL---EKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred EEEeecccCCcH---HHHHHHHhcccCCCceEEeHH
Confidence 999999777776 689999999999999998754
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00099 Score=67.21 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=89.1
Q ss_pred CCceEEEECCCccHHHHHHhhC-C---CEEEEEecCCCHHHHHH----HHHcCC---ccEEEccCCCCc---cCCCccce
Q 012235 317 ETRIGLDFGVGTGTFAARMREQ-N---VTIVSTALNLGAPFNEM----IALRGL---IPLYVTLNQRLP---FFDNTMDL 382 (467)
Q Consensus 317 ~~r~VLDIGCGtG~~a~~La~~-g---~~V~gvdiDiS~~~l~~----a~~rg~---i~~~~~d~~~Lp---f~d~sFDl 382 (467)
..-+||||.||.|.+.....+. . ..|.- .|.++..++. ++++|+ +.|.++|+.+.. --+-..++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~L--rDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILL--RDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEE--EeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 3347999999999877666655 2 23444 5677766544 456665 488999876542 22445799
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------------------CHHHHHHHHHHcCce
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------------------DLDDYMYMFLQFRYK 440 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------------------~~~~~~~~i~~~Gf~ 440 (467)
++.+..++-+.+...+...+..+.+++.|||+++.+.-.++.. +..+.-++++..||+
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFE 292 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCc
Confidence 9999999889988878889999999999999999975322221 123566677777777
Q ss_pred eeEEE
Q 012235 441 KHKWA 445 (467)
Q Consensus 441 ~l~W~ 445 (467)
++.-.
T Consensus 293 K~~q~ 297 (311)
T PF12147_consen 293 KIDQR 297 (311)
T ss_pred hhhhe
Confidence 66443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.5e-05 Score=81.68 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=69.0
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHH----HHHcCC--ccEEEccCCCCc--cCCCccceEEecc
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEM----IALRGL--IPLYVTLNQRLP--FFDNTMDLIHTTG 387 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~----a~~rg~--i~~~~~d~~~Lp--f~d~sFDlVis~~ 387 (467)
...+||||||.|.+...+|... ..++| +++....+.. +.+.+. +.++..++..+. ++++++|.|+.++
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iG--iE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIG--VEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEE--EEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3489999999999999999885 45666 5554443333 333443 445555654332 6789999999988
Q ss_pred ccccccch------hhHHHHHHHHHhccCCCcEEEEEe
Q 012235 388 FMDGWLDM------LLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 388 ~L~h~~~~------~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.= .|+.. -.-..++..+.++|||||.+.+.+
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 76 55421 112479999999999999999843
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00025 Score=72.92 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=74.6
Q ss_pred CceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH-Hc-CCccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA-LR-GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~-~r-g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
....+|+|.|.|..+..+...-..+-+++.|.. .+..++ .- ..|..+.+|...- .|.+ |+|+.-++++||.+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp--~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLP--FVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDE 252 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHH--HHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChH
Confidence 458999999999999999987666777656643 332222 22 2266777775443 3333 599999999999987
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+ ..++|+++...|+|||.+++.+...+
T Consensus 253 d-cvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 253 D-CVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred H-HHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 5 68999999999999999999877544
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=68.90 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=72.9
Q ss_pred eEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
+|+|+|||||.++...+-.| ..|+++|+| +++++.++++ +.+.++++|..++ .+.+|.|+.|-.+--+.
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~~V~~vdiD--~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~~~ 122 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGASRVLAVDID--PEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGSQR 122 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCcEEEEEecC--HHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCcccc
Confidence 79999999999999998887 678896665 5555555432 3488999998887 56789999987764333
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee-eEEEE
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK-HKWAI 446 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~-l~W~~ 446 (467)
...+ ..++....++-+ ++.+... ....+-+.+.....|+.. +.|.+
T Consensus 123 rhaD-r~Fl~~Ale~s~-----vVYsiH~-a~~~~f~~~~~~~~G~~v~~~~~~ 169 (198)
T COG2263 123 RHAD-RPFLLKALEISD-----VVYSIHK-AGSRDFVEKFAADLGGTVTHIERA 169 (198)
T ss_pred ccCC-HHHHHHHHHhhh-----eEEEeec-cccHHHHHHHHHhcCCeEEEEEEE
Confidence 2222 234444444431 2211111 123445666778888643 45543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00014 Score=68.41 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=77.5
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCE---------EEEEecCCCHHHHHHHHHc----C---CccEEE
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVT---------IVSTALNLGAPFNEMIALR----G---LIPLYV 367 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~---------V~gvdiDiS~~~l~~a~~r----g---~i~~~~ 367 (467)
.+..+....++. .|||--||+|++....+.. +.. ++| .|+++.+++.+.++ + .+.+.+
T Consensus 19 ~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g--~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 19 ALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIG--SDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEE--EESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEe--cCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 344555566666 8999999999998766554 333 567 66667777666542 2 267888
Q ss_pred ccCCCCccCCCccceEEeccccccc-c----chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 368 TLNQRLPFFDNTMDLIHTTGFMDGW-L----DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 368 ~d~~~Lpf~d~sFDlVis~~~L~h~-~----~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
.|+..+++.++++|.|+++...-.- . ...-...++.++.|+|++...+++.. .. .+.+.+...+++..
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~----~~---~~~~~~~~~~~~~~ 167 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS----NR---ELEKALGLKGWRKR 167 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES----CC---CHHHHHTSTTSEEE
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC----CH---HHHHHhcchhhceE
Confidence 9999999888999999998765211 1 12234577899999999944444421 22 24455555555554
Q ss_pred EE
Q 012235 443 KW 444 (467)
Q Consensus 443 ~W 444 (467)
+-
T Consensus 168 ~~ 169 (179)
T PF01170_consen 168 KL 169 (179)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00043 Score=68.98 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=58.3
Q ss_pred EEEccCCCCc-cCC-----CccceEEecccccccc-chhhHHHHHHHHHhccCCCcEEEEEecccC-------------C
Q 012235 365 LYVTLNQRLP-FFD-----NTMDLIHTTGFMDGWL-DMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------K 424 (467)
Q Consensus 365 ~~~~d~~~Lp-f~d-----~sFDlVis~~~L~h~~-~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------~ 424 (467)
++..|....+ +.+ ..||+|++.++++... +.+....++.++.++|||||.|++...... .
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~ 217 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLP 217 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccccc
Confidence 5556655443 322 3599999999997654 555678899999999999999999643321 1
Q ss_pred CCHHHHHHHHHHcCceeeEEEE
Q 012235 425 KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 425 ~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
-+.+.+.+.++..||....+..
T Consensus 218 l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 218 LNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp B-HHHHHHHHHHTTEEEEEEEG
T ss_pred CCHHHHHHHHHHcCCEEEeccc
Confidence 2456888999999999888873
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00034 Score=69.70 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=70.6
Q ss_pred ccccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEE
Q 012235 291 EKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLY 366 (467)
Q Consensus 291 e~~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~ 366 (467)
-+|+|+. .... -..|.+..++.+++ +||+||+|.|.++..|++++..|+++++| ..+.+..+++ +.+.++
T Consensus 8 ~GQnFL~-d~~v-~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD--~~l~~~L~~~~~~~~n~~vi 81 (259)
T COG0030 8 LGQNFLI-DKNV-IDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARVTAIEID--RRLAEVLKERFAPYDNLTVI 81 (259)
T ss_pred ccccccc-CHHH-HHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeEEEEEeC--HHHHHHHHHhcccccceEEE
Confidence 3455665 2222 22344455566655 89999999999999999999999996666 4555555544 458899
Q ss_pred EccCCCCccCCC-ccceEEeccccccccch
Q 012235 367 VTLNQRLPFFDN-TMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 367 ~~d~~~Lpf~d~-sFDlVis~~~L~h~~~~ 395 (467)
++|+...+++.- .++.|+++... +...+
T Consensus 82 ~~DaLk~d~~~l~~~~~vVaNlPY-~Issp 110 (259)
T COG0030 82 NGDALKFDFPSLAQPYKVVANLPY-NISSP 110 (259)
T ss_pred eCchhcCcchhhcCCCEEEEcCCC-cccHH
Confidence 999998888654 68999998876 55554
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00078 Score=69.54 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=71.8
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccccccc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
.++. ++||+||++|.|+..|.++|..|+++| .+ ++...+...+.+..+..+..++....+.+|+|+|..+-.
T Consensus 210 ~~g~--~vlDLGAsPGGWT~~L~~rG~~V~AVD--~g-~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~--- 281 (357)
T PRK11760 210 APGM--RAVDLGAAPGGWTYQLVRRGMFVTAVD--NG-PMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK--- 281 (357)
T ss_pred CCCC--EEEEeCCCCcHHHHHHHHcCCEEEEEe--ch-hcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---
Confidence 4555 899999999999999999999999955 32 355555666678888887666543367899999988752
Q ss_pred chhhHHHHHHHHHhccCCC--cEEEEEecccCCCCHH
Q 012235 394 DMLLLDFILFDWDRILRPG--GLLWIDRFFCNKKDLD 428 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPG--G~LiI~~~~~~~~~~~ 428 (467)
+ ..+..-+.+.|..| ..+++.--+..+...+
T Consensus 282 -P---~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~ 314 (357)
T PRK11760 282 -P---ARVAELMAQWLVNGWCREAIFNLKLPMKKRYE 314 (357)
T ss_pred -H---HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHH
Confidence 2 35666666777665 4555544444444433
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00029 Score=69.85 Aligned_cols=107 Identities=17% Similarity=0.133 Sum_probs=71.9
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcC---CccEEEccCCCC-cc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRG---LIPLYVTLNQRL-PF 375 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg---~i~~~~~d~~~L-pf 375 (467)
+..++...... +||+||+++|+-+.+|+.. +..+++++.| +...+.|+ +.| .|.++.+++... +-
T Consensus 71 L~~l~~~~~ak--~iLEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 71 LNMLLKLINAK--NTMEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKIDFREGPALPVLDQ 146 (247)
T ss_pred HHHHHHHhCCC--EEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHH
Confidence 33444443333 8999999999999988864 4578885554 55444443 333 378888875432 21
Q ss_pred ------CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 376 ------FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 376 ------~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
..++||+|+...--. .....+..+.+.|+|||.++++...+.
T Consensus 147 l~~~~~~~~~fD~iFiDadK~------~Y~~y~~~~l~ll~~GGviv~DNvl~~ 194 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDADKD------NYINYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_pred HHhccccCCcccEEEecCCHH------HhHHHHHHHHHhcCCCeEEEEcCCCCC
Confidence 136899999765432 235677888899999999999866543
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=69.11 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=61.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCC-c-cC--------------C
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRL-P-FF--------------D 377 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~L-p-f~--------------d 377 (467)
+|||++||+|.++..+++....|++ +|.++.+++.++++ + .+.++.+|+..+ + +. .
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~~v~~--vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFRRVLA--TEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred eEEEEeccccHHHHHHHhhCCEEEE--EECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 6999999999999999988778888 67778888777543 3 367888886553 1 10 1
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
..||+|+..-.-..+ . +.++..+.+ |++.++++
T Consensus 287 ~~~D~v~lDPPR~G~-~----~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 287 YNFSTIFVDPPRAGL-D----DETLKLVQA---YERILYIS 319 (362)
T ss_pred CCCCEEEECCCCCCC-c----HHHHHHHHc---cCCEEEEE
Confidence 258999987654211 1 345555544 68887773
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=67.40 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=66.7
Q ss_pred CceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-ccCCCccceEE
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-PFFDNTMDLIH 384 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-pf~d~sFDlVi 384 (467)
.++||.||+|.|..+..+.+. + ..++. +|+.+.+++.+++. ..+.++.+|+..+ ...+++||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~--VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVM--CDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEE--EECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 458999999999999988875 2 45777 55557777777642 2367788886553 33457899999
Q ss_pred ecccccccc---c-hhhHHHHHH-HHHhccCCCcEEEEE
Q 012235 385 TTGFMDGWL---D-MLLLDFILF-DWDRILRPGGLLWID 418 (467)
Q Consensus 385 s~~~L~h~~---~-~~~l~~~L~-el~RvLKPGG~LiI~ 418 (467)
.... ..+. . .-.-..+++ .+.+.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8732 1110 0 000135777 899999999998774
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0013 Score=66.01 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=82.4
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH---H----cC------------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA---L----RG------------------------------ 361 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~---~----rg------------------------------ 361 (467)
.+||-=|||.|+++..++.+|..+.| .+.|--|+-... . .+
T Consensus 58 ~~VLVPGsGLGRLa~Eia~~G~~~~g--nE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 58 IRVLVPGSGLGRLAWEIAKLGYAVQG--NEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred cEEEEcCCCcchHHHHHhhccceEEE--EEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 47999999999999999999999999 555555532210 0 00
Q ss_pred ---------CccEEEccCCCCccCC---CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc-----cC-
Q 012235 362 ---------LIPLYVTLNQRLPFFD---NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF-----CN- 423 (467)
Q Consensus 362 ---------~i~~~~~d~~~Lpf~d---~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~-----~~- 423 (467)
.+....+|...+...+ ++||.|++.+.+. -..+ +-..+..+.++|||||+++=..+. ..
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-TA~N--i~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-TAEN--IIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee-chHH--HHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 0112333433333333 6899999987762 2222 468899999999999964433221 11
Q ss_pred -------CCCHHHHHHHHHHcCceeeEEEE
Q 012235 424 -------KKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 424 -------~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
.-..+++..+++++||+.++...
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 11356899999999999888766
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=63.02 Aligned_cols=94 Identities=13% Similarity=-0.023 Sum_probs=60.5
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCC-c-c-CCC-ccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRL-P-F-FDN-TMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~L-p-f-~d~-sFDlVis~~ 387 (467)
+|||++||+|.++..++.+|. .|++ +|.+..+++.+.+ .+ .+.++.+|+... . . ... .||+|+..-
T Consensus 52 ~vLDLfaGsG~lglea~srga~~v~~--vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSRGAKVAFL--EEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred EEEEecCCCcHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 899999999999999999986 6777 5555666555533 22 356788887432 2 1 122 377777765
Q ss_pred ccccccchhhHHHHHHHH--HhccCCCcEEEEEe
Q 012235 388 FMDGWLDMLLLDFILFDW--DRILRPGGLLWIDR 419 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el--~RvLKPGG~LiI~~ 419 (467)
.+. ... ...++..+ ..+|+++|.+++.+
T Consensus 130 Py~-~~~---~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 130 PFF-NGA---LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CCC-CCc---HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 552 211 23444444 34789999888744
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=65.94 Aligned_cols=110 Identities=9% Similarity=-0.053 Sum_probs=72.2
Q ss_pred CCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCccCCCccceEEec
Q 012235 317 ETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 317 ~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
..++||=||.|.|..++.+.+...+|+-+++| +..++.+++- ..++++.. .. ....++||+|+..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID--~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD--EKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECC--HHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence 35699999999999999999986678775555 5666666541 12444431 11 1124789999988
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEe--cccCCCCHHHHHHHHHHcCce
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR--FFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~--~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
... + +.+.+.+.|+|+|||.++... ++...+......+.+++. |.
T Consensus 147 s~~-----~---~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~-F~ 193 (262)
T PRK00536 147 QEP-----D---IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDF-FS 193 (262)
T ss_pred CCC-----C---hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhh-CC
Confidence 653 1 467899999999999998843 333332233444455553 65
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0024 Score=66.47 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=60.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC----------C------
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF----------D------ 377 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~----------d------ 377 (467)
+|||+|||+|.++..+++....|++ +|.++.+++.+.++ + .+.++.+|+.++--. .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~--vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLA--TEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 6999999999999999988778888 77778888777653 3 366888886553210 1
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
..||+|+..-.-..+ . +.++..+.+ |++.+++
T Consensus 278 ~~~d~v~lDPPR~G~-~----~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 278 YNCSTIFVDPPRAGL-D----PDTCKLVQA---YERILYI 309 (353)
T ss_pred CCCCEEEECCCCCCC-c----HHHHHHHHc---CCcEEEE
Confidence 137999886653111 1 245555544 7888888
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00033 Score=67.39 Aligned_cols=92 Identities=20% Similarity=0.240 Sum_probs=59.7
Q ss_pred CCCCCCceEEEECCCccHHHHHHhh--CCCEEEEEecCCCHHHHHHHH----Hc---CCccEEEccCCCCccCCCccceE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMRE--QNVTIVSTALNLGAPFNEMIA----LR---GLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~--~g~~V~gvdiDiS~~~l~~a~----~r---g~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
..+++ +|+|+-||-|.|+..+++ ++..|+++ |+.+.+.+.+. .+ +.+..+.+|+..+.. .+.||.|
T Consensus 99 v~~~e--~VlD~faGIG~f~l~~ak~~~~~~V~A~--d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 99 VKPGE--VVLDMFAGIGPFSLPIAKHGKAKRVYAV--DLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp --TT---EEEETT-TTTTTHHHHHHHT-SSEEEEE--ES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEE
T ss_pred CCcce--EEEEccCCccHHHHHHhhhcCccEEEEe--cCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEE
Confidence 45666 999999999999999998 57789994 45555544443 22 236778899888765 7899999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
+++..-. . ..++..+.+++|+||.+-
T Consensus 174 im~lp~~--~-----~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPES--S-----LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TSS--G-----GGGHHHHHHHEEEEEEEE
T ss_pred EECChHH--H-----HHHHHHHHHHhcCCcEEE
Confidence 9876531 1 257888999999999763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0067 Score=63.23 Aligned_cols=129 Identities=20% Similarity=0.234 Sum_probs=83.3
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHH----HHcCC--ccEEEccCCCCc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMI----ALRGL--IPLYVTLNQRLP 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a----~~rg~--i~~~~~d~~~Lp 374 (467)
.+...+++..+|+ +|||+.++.|.=+.++++. +..|++ +|.++.-++.+ .+-|. +..+..|...++
T Consensus 146 ~l~a~~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A--~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~ 221 (355)
T COG0144 146 QLPALVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVA--VDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA 221 (355)
T ss_pred HHHHHHcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEE--EcCCHHHHHHHHHHHHHcCCCceEEEeccccccc
Confidence 3455677888887 9999999999877777766 345677 55555444433 33343 346667766554
Q ss_pred ---cCCCccceEEec------ccccc-----c--cch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHH
Q 012235 375 ---FFDNTMDLIHTT------GFMDG-----W--LDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYM 431 (467)
Q Consensus 375 ---f~d~sFDlVis~------~~L~h-----~--~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~ 431 (467)
...+.||.|+.. +++.. | ... .....+|....+.|||||.|+.++.....++.+ ...
T Consensus 222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~ 301 (355)
T COG0144 222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVE 301 (355)
T ss_pred ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHH
Confidence 222359999952 22210 1 110 112478899999999999999998877655544 555
Q ss_pred HHHHHc
Q 012235 432 YMFLQF 437 (467)
Q Consensus 432 ~~i~~~ 437 (467)
.++++.
T Consensus 302 ~~L~~~ 307 (355)
T COG0144 302 RFLERH 307 (355)
T ss_pred HHHHhC
Confidence 666654
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0019 Score=61.39 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-CC--EEEEEecCCCHHHHHHHHHcCCccEEEc-cCCCC--------ccCCCcc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-NV--TIVSTALNLGAPFNEMIALRGLIPLYVT-LNQRL--------PFFDNTM 380 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g~--~V~gvdiDiS~~~l~~a~~rg~i~~~~~-d~~~L--------pf~d~sF 380 (467)
+.+++ +|||+||..|.++....++ +. -|.| +|+-. ...-+| +.++.+ |..+- ..++...
T Consensus 67 l~p~~--~VlD~G~APGsWsQVavqr~~p~g~v~g--VDllh----~~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 67 LRPED--TVLDCGAAPGSWSQVAVQRVNPNGMVLG--VDLLH----IEPPEG-ATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred cCCCC--EEEEccCCCChHHHHHHHhhCCCceEEE--Eeeee----ccCCCC-cccccccccCCHHHHHHHHHhCCCCcc
Confidence 45666 9999999999999988877 33 4556 44311 111122 223333 32211 1356889
Q ss_pred ceEEeccccc--------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee---EEEEccC
Q 012235 381 DLIHTTGFMD--------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH---KWAISPK 449 (467)
Q Consensus 381 DlVis~~~L~--------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l---~W~~~~k 449 (467)
|+|+|..... |....+.-..++.-....++|+|.|++-.+... +...+...+... |..+ +-....+
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~--e~~~l~r~l~~~-f~~Vk~vKP~Asr~ 214 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS--EEALLQRRLQAV-FTNVKKVKPDASRD 214 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC--chHHHHHHHHHH-hhhcEeeCCccccc
Confidence 9999876542 211111112344445567789999988665433 333455555544 5444 4444445
Q ss_pred CCCceEEEEEeecCC
Q 012235 450 SKDEVYLSALLEKPP 464 (467)
Q Consensus 450 ~~devyl~avlqKP~ 464 (467)
...|.|+.+.-.|+-
T Consensus 215 eS~E~y~v~~~~k~~ 229 (232)
T KOG4589|consen 215 ESAETYLVCLNFKGN 229 (232)
T ss_pred cccceeeeeeeccCc
Confidence 666889988776664
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00084 Score=68.67 Aligned_cols=116 Identities=15% Similarity=0.208 Sum_probs=73.0
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
++|||+|||+|.++...++.|. .|++++ .| +|.+.+++ +. .|.++.+-.++..+ ++..|+|++--.-.
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA~~vYAvE--AS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-PEk~DviISEPMG~ 254 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGAKKVYAVE--AS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-PEKVDVIISEPMGY 254 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCcceEEEEe--hh-HHHHHHHHHHhcCCccceEEEccCccccccC-chhccEEEeccchh
Confidence 5899999999999998888864 577744 32 45555543 22 26777788888777 57799999865443
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEe--ccc-CCCCHHHHHHHHHHcCc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDR--FFC-NKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~--~~~-~~~~~~~~~~~i~~~Gf 439 (467)
...+...++..+ ...|.|||.|.++=.. ... +-.+..-+.+.+.+..|
T Consensus 255 mL~NERMLEsYl-~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnF 305 (517)
T KOG1500|consen 255 MLVNERMLESYL-HARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANF 305 (517)
T ss_pred hhhhHHHHHHHH-HHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhh
Confidence 344444444433 4559999999875321 111 11122356666665533
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0014 Score=62.14 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=69.6
Q ss_pred eEEEECCCccHHHHHHh--hCCCEEEEEecCCCHHH---HHHHH-HcC--CccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMR--EQNVTIVSTALNLGAPF---NEMIA-LRG--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La--~~g~~V~gvdiDiS~~~---l~~a~-~rg--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+++|||+|.|.-+..++ ....+++- +|....- ++.+. +-+ ++.++++.++. +....+||+|++-.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~L--vEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTL--VESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAP- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEE--EESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEE--EeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcC-
Confidence 69999999996665555 34667777 5555533 33332 223 37788887777 55678999999987652
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
+..++.-+...|++||.+++.--....++.+.....+...+.+.
T Consensus 127 ------l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~ 170 (184)
T PF02527_consen 127 ------LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV 170 (184)
T ss_dssp ------HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence 35788888999999999888432222222223444444444433
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0089 Score=58.36 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=95.1
Q ss_pred ccccccccCCcChHHHHHH---HhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCH----HHHHHHHHc
Q 012235 291 EKPKWVANRSVPVDFLISD---ILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGA----PFNEMIALR 360 (467)
Q Consensus 291 e~~~W~~~~~~~~d~~I~~---lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~----~~l~~a~~r 360 (467)
+-+.|.- ........|.. -+.+++|. +||-+|+.+|+...++++- .-.|++ ++.|+ ..+..+.+|
T Consensus 47 eYR~W~P-~RSKLaAai~~Gl~~~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYa--VEfs~r~~rdL~~la~~R 121 (229)
T PF01269_consen 47 EYRVWNP-FRSKLAAAILKGLENIPIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYA--VEFSPRSMRDLLNLAKKR 121 (229)
T ss_dssp EEEEE-T-TT-HHHHHHHTT-S--S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEE--EESSHHHHHHHHHHHHHS
T ss_pred ceeecCc-hhhHHHHHHHcCccccCCCCCC--EEEEecccCCCccchhhhccCCCCcEEE--EEecchhHHHHHHHhccC
Confidence 5567765 33323333322 23466777 9999999999999888876 336777 66666 456667788
Q ss_pred CCccEEEccCCCCc---cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc----CCCCHHHHHH-
Q 012235 361 GLIPLYVTLNQRLP---FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC----NKKDLDDYMY- 432 (467)
Q Consensus 361 g~i~~~~~d~~~Lp---f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~----~~~~~~~~~~- 432 (467)
.++--+..|+..-. ..-+.+|+|++.-+- ++..+.++.++...||+||.++++--.. ..+..+.+.+
T Consensus 122 ~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQ-----p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e 196 (229)
T PF01269_consen 122 PNIIPILEDARHPEKYRMLVEMVDVIFQDVAQ-----PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEE 196 (229)
T ss_dssp TTEEEEES-TTSGGGGTTTS--EEEEEEE-SS-----TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHH
T ss_pred CceeeeeccCCChHHhhcccccccEEEecCCC-----hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHH
Confidence 87555566655321 123479999886553 3335678899999999999999865331 1222224444
Q ss_pred --HHHHcCceeeEEEEcc-CCCCceEEEEEeec
Q 012235 433 --MFLQFRYKKHKWAISP-KSKDEVYLSALLEK 462 (467)
Q Consensus 433 --~i~~~Gf~~l~W~~~~-k~~devyl~avlqK 462 (467)
.++..||+.+.-.... ..++...+.+.++|
T Consensus 197 ~~~L~~~~~~~~e~i~LePy~~dH~~vv~~y~~ 229 (229)
T PF01269_consen 197 VKKLKEEGFKPLEQITLEPYERDHAMVVGRYRK 229 (229)
T ss_dssp HHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE--
T ss_pred HHHHHHcCCChheEeccCCCCCCcEEEEEEecC
Confidence 4444578777655443 36777777777665
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=69.27 Aligned_cols=90 Identities=19% Similarity=0.174 Sum_probs=64.2
Q ss_pred eEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||++||+|.++..++.. + ..|++ +|+++.+++.++++ +. +.++.+|+..+....+.||+|+..-.
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~~~V~a--~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGVEKVTL--NDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 7999999999999999865 4 36777 66667777666532 32 44777787654221467999998642
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
... ..++....+.+++||.++++
T Consensus 135 -Gs~---~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSP---APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCc---HHHHHHHHHHhcCCCEEEEE
Confidence 111 35777777889999999996
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0059 Score=63.26 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=88.4
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEEe
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.+|+ +|||+=+|-|.|+..++..|.. |++ +|+++.+.+.+.+ ++ .+..+++|+..++..-+.+|-|+.
T Consensus 187 ~~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A--~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim 262 (341)
T COG2520 187 KEGE--TVLDMFAGVGPFSIPIAKKGRPKVYA--IDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIM 262 (341)
T ss_pred cCCC--EEEEccCCcccchhhhhhcCCceEEE--EecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEe
Confidence 3477 9999999999999999999766 887 5566666555543 22 267889999888776689999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCC----HHHHHHHHHHcCc--eeeEEEEccC
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKD----LDDYMYMFLQFRY--KKHKWAISPK 449 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~----~~~~~~~i~~~Gf--~~l~W~~~~k 449 (467)
+.... ...++....+.+++||.+-+-++....+. ...+.....+.|+ ..+.|.....
T Consensus 263 ~~p~~-------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~Vks 325 (341)
T COG2520 263 GLPKS-------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKS 325 (341)
T ss_pred CCCCc-------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecc
Confidence 87652 13678888899999999888766655442 2244445555554 4455554444
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0022 Score=62.59 Aligned_cols=111 Identities=21% Similarity=0.209 Sum_probs=74.0
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHH--HHHHHHcC---CccEEEccCCC-Cc--
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPF--NEMIALRG---LIPLYVTLNQR-LP-- 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~--l~~a~~rg---~i~~~~~d~~~-Lp-- 374 (467)
.+..++.+...+ ++||||.=||+-+..+|.. +-.|+++|+|..... .+..+..| .+.++++.+.+ ++
T Consensus 64 fl~~li~~~~ak--~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 64 FLQMLIRLLNAK--RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHHHhCCc--eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 344555555444 8999999888777777655 678888776644322 22223333 37888886432 22
Q ss_pred ---cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 375 ---FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 375 ---f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
...++||+|+. .||.+. ......++.++||+||.++++.-.++.
T Consensus 142 ~~~~~~~tfDfaFv----DadK~n--Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 142 LADGESGTFDFAFV----DADKDN--YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HhcCCCCceeEEEE----ccchHH--HHHHHHHHHhhcccccEEEEeccccCC
Confidence 35689999984 455555 347899999999999999998744433
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0037 Score=65.89 Aligned_cols=106 Identities=19% Similarity=0.037 Sum_probs=78.3
Q ss_pred CCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----CC----ccEEEccCCCCc----cCCCccc
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----GL----IPLYVTLNQRLP----FFDNTMD 381 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g~----i~~~~~d~~~Lp----f~d~sFD 381 (467)
.|+ +|||+=|=||.|+...+..|. +|++ +|.|..+++.+.++ +. +.++++|+..+- -...+||
T Consensus 217 ~Gk--rvLNlFsYTGgfSv~Aa~gGA~~vt~--VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 217 AGK--RVLNLFSYTGGFSVHAALGGASEVTS--VDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred cCC--eEEEecccCcHHHHHHHhcCCCceEE--EeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 355 899999999999999999998 8999 78888888877653 32 568888865432 2345899
Q ss_pred eEEeccccc------cccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 382 LIHTTGFMD------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 382 lVis~~~L~------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+|+..-.-. -|.-..+...++....++|+|||.+++++-...-
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 999753211 1222334567899999999999999997755443
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0037 Score=62.82 Aligned_cols=115 Identities=17% Similarity=0.053 Sum_probs=71.3
Q ss_pred CceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc--CCcc-----EEEcc-CCCCccCCCccceEEec
Q 012235 318 TRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR--GLIP-----LYVTL-NQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r--g~i~-----~~~~d-~~~Lpf~d~sFDlVis~ 386 (467)
.++|||+|+|+|..+..+.+. -.+++. +|.|+.|++.+..- .... +.... ....++ ...|+|+++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~--vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s 109 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTC--VDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIAS 109 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeee--ecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEe
Confidence 348999999999766555543 234555 88889888766431 1111 11101 111222 233999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCH--HHHHHHHHHcCc
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDL--DDYMYMFLQFRY 439 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~--~~~~~~i~~~Gf 439 (467)
++|....+ .....++..+.+.+.+ .|+|.++..+.... ....+.+...|+
T Consensus 110 ~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~ 161 (274)
T PF09243_consen 110 YVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGA 161 (274)
T ss_pred hhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCC
Confidence 99987777 5667888888887766 88888776654322 255555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=64.45 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=58.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-------CccEEEccCCCCccCCCccc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-------LIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-------~i~~~~~d~~~Lpf~d~sFD 381 (467)
+-.++++++ .||++|.|||.++..|.+.|.+|+++++| +.|+....+|. ...++++|....++ ..||
T Consensus 52 ~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~E~D--prmvael~krv~gtp~~~kLqV~~gD~lK~d~--P~fd 125 (315)
T KOG0820|consen 52 EKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAVEID--PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--PRFD 125 (315)
T ss_pred hccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEEecC--cHHHHHHHHHhcCCCccceeeEEecccccCCC--cccc
Confidence 334577777 99999999999999999999999995555 67777777763 25688888776653 4699
Q ss_pred eEEecccc
Q 012235 382 LIHTTGFM 389 (467)
Q Consensus 382 lVis~~~L 389 (467)
.++++...
T Consensus 126 ~cVsNlPy 133 (315)
T KOG0820|consen 126 GCVSNLPY 133 (315)
T ss_pred eeeccCCc
Confidence 99997554
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0031 Score=63.79 Aligned_cols=127 Identities=19% Similarity=0.169 Sum_probs=71.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhh---------CCCEEEEEecCCCHHHHHHHH----HcCC----ccEEEc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMRE---------QNVTIVSTALNLGAPFNEMIA----LRGL----IPLYVT 368 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~---------~g~~V~gvdiDiS~~~l~~a~----~rg~----i~~~~~ 368 (467)
++..++...++. +|+|-+||+|.|...+.+ ....++|+|+| +.+...+. ..+. ..+..+
T Consensus 37 l~~~~~~~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~--~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 37 LMVKLLNPKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEID--PEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHTT-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES---HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHhhhhccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEeecCc--HHHHHHHHhhhhhhcccccccccccc
Confidence 344555555554 899999999999887766 35678886655 44443332 1221 246677
Q ss_pred cCCCCccC--CCccceEEeccccccc--cch----------------hhHHHHHHHHHhccCCCcEEEEEeccc--CCCC
Q 012235 369 LNQRLPFF--DNTMDLIHTTGFMDGW--LDM----------------LLLDFILFDWDRILRPGGLLWIDRFFC--NKKD 426 (467)
Q Consensus 369 d~~~Lpf~--d~sFDlVis~~~L~h~--~~~----------------~~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~ 426 (467)
|....+.. .+.||+|+++..+... ... ..--.++..+.+.|++||.+.+..+.. ....
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~ 192 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSS 192 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGST
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccc
Confidence 75544433 4789999998665322 110 001247788999999999987765432 1222
Q ss_pred H-HHHHHHHHH
Q 012235 427 L-DDYMYMFLQ 436 (467)
Q Consensus 427 ~-~~~~~~i~~ 436 (467)
. ..+++.+-+
T Consensus 193 ~~~~iR~~ll~ 203 (311)
T PF02384_consen 193 SEKKIRKYLLE 203 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 2 255554443
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00045 Score=66.48 Aligned_cols=124 Identities=19% Similarity=0.291 Sum_probs=86.1
Q ss_pred CceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
..++||+|+|.|..+..++..-..|++ .+.|..|.....+.+- .++.. . ...-.+-.||+|.|...+...-++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyA--TElS~tMr~rL~kk~y-nVl~~-~-ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYA--TELSWTMRDRLKKKNY-NVLTE-I-EWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHH--HHhhHHHHHHHhhcCC-ceeee-h-hhhhcCceeehHHHHHHHHhhcCh--
Confidence 358999999999999999877556666 6677888888877652 11111 1 111124469999999888654444
Q ss_pred HHHHHHHHHhccCC-CcEEEEEe------ccc-------CCC-------------CHHHHHHHHHHcCceeeEEEEccC
Q 012235 398 LDFILFDWDRILRP-GGLLWIDR------FFC-------NKK-------------DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 398 l~~~L~el~RvLKP-GG~LiI~~------~~~-------~~~-------------~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
-.++.++..+|+| +|.++++- +.. .+. +...+.+.++..||..-.|.-.+.
T Consensus 186 -~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlPY 263 (288)
T KOG3987|consen 186 -FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLPY 263 (288)
T ss_pred -HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCCe
Confidence 4799999999999 89987742 111 000 123677889999998888876554
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0073 Score=59.78 Aligned_cols=142 Identities=14% Similarity=0.088 Sum_probs=83.7
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCc-cCCC-ccceE
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLP-FFDN-TMDLI 383 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lp-f~d~-sFDlV 383 (467)
.++||=||.|.|..+..+.+.. ..++.+ |+.+..++.+++- ..+.++.+|+..+- -..+ .||+|
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~V--EiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVV--EIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEE--ES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEE--ecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4589999999999999999874 567774 4556666666431 24778888865542 2234 89999
Q ss_pred Eeccccccccc-hhhHHHHHHHHHhccCCCcEEEEEe--cccCCCCHHHHHHHHHHcCceeeEEE--EccCCCCceEEEE
Q 012235 384 HTTGFMDGWLD-MLLLDFILFDWDRILRPGGLLWIDR--FFCNKKDLDDYMYMFLQFRYKKHKWA--ISPKSKDEVYLSA 458 (467)
Q Consensus 384 is~~~L~h~~~-~~~l~~~L~el~RvLKPGG~LiI~~--~~~~~~~~~~~~~~i~~~Gf~~l~W~--~~~k~~devyl~a 458 (467)
+....-..... ..-...+++.+.++|+|||.+++.. +.........+.+.++.. |..+..- ..+--...+|.-+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~~~~vP~~~~~~~~~~ 233 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV-FPQVKPYTAYVPSYGSGWWSFA 233 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT-SSEEEEEEEECTTSCSSEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh-CCceEEEEEEcCeecccceeEE
Confidence 97543211110 0112479999999999999998854 222222223455566666 4433332 2222233345445
Q ss_pred Eeec
Q 012235 459 LLEK 462 (467)
Q Consensus 459 vlqK 462 (467)
+..|
T Consensus 234 ~~s~ 237 (246)
T PF01564_consen 234 SASK 237 (246)
T ss_dssp EEES
T ss_pred EEeC
Confidence 5554
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0035 Score=67.10 Aligned_cols=100 Identities=17% Similarity=0.297 Sum_probs=80.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-----CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-----LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
++|-+|||.-.+...+.+.|. .++. +|.|...++....++ ...+...|...+.|++.+||+|+.-..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~--iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITN--IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCcee--ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 789999999999999998875 4667 777777777665543 36788899999999999999999988887654
Q ss_pred chh-------hHHHHHHHHHhccCCCcEEEEEecc
Q 012235 394 DML-------LLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 394 ~~~-------~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
.++ .....+.++.|+|+|||.++..++.
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 332 2345688999999999999887773
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.002 Score=65.53 Aligned_cols=79 Identities=22% Similarity=0.172 Sum_probs=58.0
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCc--cCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLP--FFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lp--f~d 377 (467)
+.+.+.+.++. ++||.+||.|+.+..+++.. ..|+| +|.++.+++.+.++ +.+.+++++...+. ..+
T Consensus 11 vl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~Vig--iD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 11 VVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIA--IDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEE--EcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 34455566666 89999999999999999883 57888 67778888887654 24788888877654 112
Q ss_pred C--ccceEEecccc
Q 012235 378 N--TMDLIHTTGFM 389 (467)
Q Consensus 378 ~--sFDlVis~~~L 389 (467)
+ ++|.|++....
T Consensus 87 ~~~~vDgIl~DLGv 100 (296)
T PRK00050 87 GLGKVDGILLDLGV 100 (296)
T ss_pred CCCccCEEEECCCc
Confidence 2 79999976443
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0073 Score=57.82 Aligned_cols=128 Identities=12% Similarity=0.019 Sum_probs=76.7
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC-CC--EEEEEecCCC--------HHHHHHHHHc--CCccEEEccCCCCc
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ-NV--TIVSTALNLG--------APFNEMIALR--GLIPLYVTLNQRLP 374 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~--~V~gvdiDiS--------~~~l~~a~~r--g~i~~~~~d~~~Lp 374 (467)
..+..++++. +|+|+=.|.|+|++-++.. |. .|+++..+.. +.+...+++. .++..+-.....++
T Consensus 41 L~FaGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 41 LAFAGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG 118 (238)
T ss_pred eEEeccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC
Confidence 3456788888 9999999999999998876 22 5666644432 1111222211 11233333333333
Q ss_pred -------cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC------------CCHHHHHHHHH
Q 012235 375 -------FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK------------KDLDDYMYMFL 435 (467)
Q Consensus 375 -------f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------~~~~~~~~~i~ 435 (467)
.+..++|.++.+..+ | .....++..++++.|||||.+.+.+..... -+....+...+
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i-~---~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~ve 194 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNI-H---PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVE 194 (238)
T ss_pred CCCcccccccchhhhhhhcccc-C---cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHH
Confidence 123344444444444 3 233578999999999999999886543211 13457778888
Q ss_pred HcCcee
Q 012235 436 QFRYKK 441 (467)
Q Consensus 436 ~~Gf~~ 441 (467)
..||+.
T Consensus 195 aaGFkl 200 (238)
T COG4798 195 AAGFKL 200 (238)
T ss_pred hhccee
Confidence 889854
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.016 Score=57.08 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=73.7
Q ss_pred cccccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHH-HHHHcCCcc-EE
Q 012235 290 KEKPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNE-MIALRGLIP-LY 366 (467)
Q Consensus 290 ~e~~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~-~a~~rg~i~-~~ 366 (467)
.+.+.|..+.+......+ +...+...+ +++||+|+-||.|+..+.++| ..|+++|+-.. .+. ..+....+. +.
T Consensus 54 ~~~~~yVSRG~~KL~~al-e~F~l~~k~-kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~--Ql~~kLR~d~rV~~~E 129 (245)
T COG1189 54 GEEQPYVSRGGLKLEKAL-EEFELDVKG-KVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG--QLHWKLRNDPRVIVLE 129 (245)
T ss_pred ccCcCccccHHHHHHHHH-HhcCcCCCC-CEEEEecCCCccHHHHHHHcCCcEEEEEEccCC--ccCHhHhcCCcEEEEe
Confidence 366788885444333333 334444332 489999999999999999996 46888555432 221 122222222 22
Q ss_pred EccCCCCc--cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 367 VTLNQRLP--FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 367 ~~d~~~Lp--f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
..++..+. ...+..|++++.-++. .+..+|..+..+++|+|.++.-
T Consensus 130 ~tN~r~l~~~~~~~~~d~~v~DvSFI------SL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 130 RTNVRYLTPEDFTEKPDLIVIDVSFI------SLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred cCChhhCCHHHcccCCCeEEEEeehh------hHHHHHHHHHHhcCCCceEEEE
Confidence 33444432 1123678999987773 2467899999999999987763
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0059 Score=61.87 Aligned_cols=125 Identities=15% Similarity=-0.005 Sum_probs=76.8
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCC-c--cCCCccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRL-P--FFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~L-p--f~d~sFDlVis~~ 387 (467)
+|||+=|=||.|+...+..|. .|++ +|.|+.+++.+.++ + .+.++.+|+..+ . -..+.||+|++.-
T Consensus 126 rvLnlFsYTGgfsv~Aa~gGA~~v~~--VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 126 RVLNLFSYTGGFSVAAAAGGAKEVVS--VDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp EEEEET-TTTHHHHHHHHTTESEEEE--EES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred ceEEecCCCCHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 899999999999999888875 5777 78889888877653 3 256888886542 1 1246899999853
Q ss_pred cc---ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC--ceeeEEEEc
Q 012235 388 FM---DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR--YKKHKWAIS 447 (467)
Q Consensus 388 ~L---~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G--f~~l~W~~~ 447 (467)
.- ..+.-..++..++..+.++|+|||.+++.+-.. .-+.+.+.+.+.+.+ ++.+.+...
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~-~i~~~~l~~~~~~~a~~~~~~~~~~~ 267 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH-HISPDFLLEAVAEAAREVEFIERLGQ 267 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T-TS-HHHHHHHHHHHHHHCEEEEEEE-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc-ccCHHHHHHHHHHhCccceEeeeecc
Confidence 21 122223345678999999999999987755432 223334555444331 344444433
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0092 Score=60.39 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=69.3
Q ss_pred CCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCc-cCCCccce
Q 012235 316 GETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLP-FFDNTMDL 382 (467)
Q Consensus 316 g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lp-f~d~sFDl 382 (467)
+..++||-||.|.|..++.+.+.. ..++. +++.+..++.+++. ..+.++.+|...+- -..++||+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~--VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITM--VEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEE--EEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 334699999999999999999985 45666 55556777777653 12567777755442 22348999
Q ss_pred EEeccccccccc--hhhHHHHHHHHHhccCCCcEEEEE
Q 012235 383 IHTTGFMDGWLD--MLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 383 Vis~~~L~h~~~--~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+....= ...+ .---..+++.+.|.|+++|.++..
T Consensus 153 Ii~D~td-p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTD-PVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCC-CCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9986543 1111 000147999999999999999886
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.022 Score=55.45 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=77.3
Q ss_pred ceEEEECCCccHHHHHHh--hCCCEEEEEecCCC-HHHHHHHHHc-C--CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 319 RIGLDFGVGTGTFAARMR--EQNVTIVSTALNLG-APFNEMIALR-G--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La--~~g~~V~gvdiDiS-~~~l~~a~~r-g--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
.+++|||+|.|.-+..|+ ....+++-+|...- ..+++.+... + ++.++++-++.+.-...-||+|+|..+-.
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~-- 146 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS-- 146 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc--
Confidence 489999999997777665 33556776433321 1345555432 3 37788888887753222299999977652
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
+..+..=....+|+||.++..-+....+...+........|+...+-
T Consensus 147 -----L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 147 -----LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred -----hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 34566677889999999876555555555556666677776655443
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0089 Score=59.47 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=68.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCC---Cc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFD---NT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d---~s 379 (467)
|.+.+.+.++. .|||||+|+|.++..|.+.+..+++++.| +.+.+...++ +.+.++.+|+..+..+. +.
T Consensus 22 Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~~v~~vE~d--~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~ 97 (262)
T PF00398_consen 22 IVDALDLSEGD--TVLEIGPGPGALTRELLKRGKRVIAVEID--PDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQ 97 (262)
T ss_dssp HHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSSEEEEEESS--HHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSS
T ss_pred HHHhcCCCCCC--EEEEeCCCCccchhhHhcccCcceeecCc--HhHHHHHHHHhhhcccceeeecchhccccHHhhcCC
Confidence 34445555555 89999999999999999999899995555 6777777663 45889999998887655 45
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCC---CcEEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRP---GGLLWI 417 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKP---GG~LiI 417 (467)
-..|+++... +.. ..++..+...-+. ...+++
T Consensus 98 ~~~vv~NlPy-~is-----~~il~~ll~~~~~g~~~~~l~v 132 (262)
T PF00398_consen 98 PLLVVGNLPY-NIS-----SPILRKLLELYRFGRVRMVLMV 132 (262)
T ss_dssp EEEEEEEETG-TGH-----HHHHHHHHHHGGGCEEEEEEEE
T ss_pred ceEEEEEecc-cch-----HHHHHHHhhcccccccceEEEE
Confidence 6678877654 333 2355555553333 344444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0057 Score=59.08 Aligned_cols=110 Identities=19% Similarity=0.286 Sum_probs=56.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCE-EEEEecCCCHHHHHHH-------HH----cC----CccEEEcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVT-IVSTALNLGAPFNEMI-------AL----RG----LIPLYVTL 369 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a-------~~----rg----~i~~~~~d 369 (467)
+.+.+++.+++ +.+|+|||.|......+-. ++. ++|+++. +...+.+ .+ .+ .+.+..+|
T Consensus 34 il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~--~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 34 ILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEIL--PELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-S--HHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEec--hHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 33445666776 8999999999876655533 554 8886554 3222222 11 12 25566777
Q ss_pred CCCCccCC---CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 370 NQRLPFFD---NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 370 ~~~Lpf~d---~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
..+.++.. ..-|+|+++... +.++ +...+.++..-||+|-+++-...+++.
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~--l~~~L~~~~~~lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTC--FDPD--LNLALAELLLELKPGARIISTKPFCPR 163 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TT--T-HH--HHHHHHHHHTTS-TT-EEEESS-SS-T
T ss_pred ccccHhHhhhhcCCCEEEEeccc--cCHH--HHHHHHHHHhcCCCCCEEEECCCcCCC
Confidence 65443211 346899998764 2222 456678888899999887665555543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.025 Score=58.23 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=63.7
Q ss_pred eEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHc----C--CccE--EEccCCC----Ccc--CCCccc
Q 012235 320 IGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALR----G--LIPL--YVTLNQR----LPF--FDNTMD 381 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~r----g--~i~~--~~~d~~~----Lpf--~d~sFD 381 (467)
.++|+|||.|.=+..|.+. +..+.-+.+|+|..+++.+..+ . .+.+ +++|..+ ++- ......
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r 158 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPT 158 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCcc
Confidence 7999999999766655432 3233334489999888777542 1 1222 4555432 221 123456
Q ss_pred eEEecc-ccccccchhhHHHHHHHHHh-ccCCCcEEEEEe
Q 012235 382 LIHTTG-FMDGWLDMLLLDFILFDWDR-ILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~-~L~h~~~~~~l~~~L~el~R-vLKPGG~LiI~~ 419 (467)
+++... ++-++.+.+ ...+|.++.+ .|+|||.|+|..
T Consensus 159 ~~~flGSsiGNf~~~e-a~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 159 TILWLGSSIGNFSRPE-AAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEEeCccccCCCHHH-HHHHHHHHHHhhCCCCCEEEEec
Confidence 777654 565555554 5689999999 999999999853
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0072 Score=57.24 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=62.2
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCC-Cc---cCCCccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQR-LP---FFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~-Lp---f~d~sFDlVis~~ 387 (467)
++||+-||+|.++...+.+|. .|+. +|.+..+.+.++++ + .+.++..|... ++ .....||+|+..-
T Consensus 45 ~vLDLFaGSGalGlEALSRGA~~v~f--VE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 45 RVLDLFAGSGALGLEALSRGAKSVVF--VEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp EEEETT-TTSHHHHHHHHTT-SEEEE--EES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred eEEEcCCccCccHHHHHhcCCCeEEE--EECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 899999999999999999985 6777 55666665555432 2 24566666432 22 2468999999987
Q ss_pred ccccccchhhHHHHHHHHH--hccCCCcEEEEEec
Q 012235 388 FMDGWLDMLLLDFILFDWD--RILRPGGLLWIDRF 420 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~--RvLKPGG~LiI~~~ 420 (467)
... .... ...++..+. .+|+++|.+++-+.
T Consensus 123 PY~-~~~~--~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 123 PYA-KGLY--YEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp STT-SCHH--HHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred Ccc-cchH--HHHHHHHHHHCCCCCCCEEEEEEec
Confidence 662 2221 246677766 89999999888553
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.1 Score=50.42 Aligned_cols=130 Identities=13% Similarity=0.063 Sum_probs=80.2
Q ss_pred EEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCC-ccceEEeccccccc
Q 012235 321 GLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDN-TMDLIHTTGFMDGW 392 (467)
Q Consensus 321 VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~-sFDlVis~~~L~h~ 392 (467)
|.||||-.|+++..|.++|..-.++..|+++.-++.|.+ .+ .+.+..+|... ++.++ ..|.|+....=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG-- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGG-- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-H--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCH--
Confidence 689999999999999999886666667777766665543 34 37788888543 22333 378877655431
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEee
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLE 461 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlq 461 (467)
.....++.+....++....|++. +......+++++...||..+.=..... ++..|-..+..
T Consensus 78 ---~lI~~ILe~~~~~~~~~~~lILq----P~~~~~~LR~~L~~~gf~I~~E~lv~e-~~~~YeIi~~~ 138 (205)
T PF04816_consen 78 ---ELIIEILEAGPEKLSSAKRLILQ----PNTHAYELRRWLYENGFEIIDEDLVEE-NGRFYEIIVAE 138 (205)
T ss_dssp ---HHHHHHHHHTGGGGTT--EEEEE----ESS-HHHHHHHHHHTTEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred ---HHHHHHHHhhHHHhccCCeEEEe----CCCChHHHHHHHHHCCCEEEEeEEEeE-CCEEEEEEEEE
Confidence 11356777777777777778773 345556899999999998775544432 34455544443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.02 Score=61.29 Aligned_cols=119 Identities=17% Similarity=0.238 Sum_probs=78.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCccC---CCc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLPFF---DNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lpf~---d~s 379 (467)
+.++..+++ ++||+=||.|+|+..|+++...|+| +++++++++.|.+ ++ ++.+..++++++... ...
T Consensus 287 ~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~V~g--vEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~ 362 (432)
T COG2265 287 EWLELAGGE--RVLDLYCGVGTFGLPLAKRVKKVHG--VEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYK 362 (432)
T ss_pred HHHhhcCCC--EEEEeccCCChhhhhhcccCCEEEE--EecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCC
Confidence 344444555 8999999999999999999999999 6666776666543 23 267888888877543 357
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
+|.|+..-.-. -.+. .++..+.+ ++|...+++ .|+......=...+...||+
T Consensus 363 ~d~VvvDPPR~-G~~~----~~lk~l~~-~~p~~IvYV---SCNP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 363 PDVVVVDPPRA-GADR----EVLKQLAK-LKPKRIVYV---SCNPATLARDLAILASTGYE 414 (432)
T ss_pred CCEEEECCCCC-CCCH----HHHHHHHh-cCCCcEEEE---eCCHHHHHHHHHHHHhCCeE
Confidence 89999865441 1121 34555444 567777777 45554444334455666664
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.035 Score=55.70 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=82.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecC--CCHHHHHHHHHcC---CccEEEccCCCCcc--
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALN--LGAPFNEMIALRG---LIPLYVTLNQRLPF-- 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiD--iS~~~l~~a~~rg---~i~~~~~d~~~Lpf-- 375 (467)
+|..+|++.||. +|++-|.|+|.++.++++. + -.++.+++. ....+++..++.+ ++.+.+-|....-|
T Consensus 96 ~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 96 MILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 577889999998 9999999999999999876 3 345665543 1223344444444 36777777655444
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
.+..+|.|+....- + -.++--++.+||.+|. .+..|..--+..+.-.+.+..+||..+..
T Consensus 174 ks~~aDaVFLDlPa-----P---w~AiPha~~~lk~~g~-r~csFSPCIEQvqrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 174 KSLKADAVFLDLPA-----P---WEAIPHAAKILKDEGG-RLCSFSPCIEQVQRTCEALRSLGFIEIET 233 (314)
T ss_pred cccccceEEEcCCC-----h---hhhhhhhHHHhhhcCc-eEEeccHHHHHHHHHHHHHHhCCCceEEE
Confidence 35789998865543 2 2456666678888874 22223222234456667788888866544
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.036 Score=57.67 Aligned_cols=128 Identities=18% Similarity=0.191 Sum_probs=66.8
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCc----------------cCC
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLP----------------FFD 377 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lp----------------f~d 377 (467)
.|||+-||.|+++..|++....|+| ++..+.+++.|.+ ++ ++.++.++++++. ...
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~g--vE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 276 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIG--VEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKS 276 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEE--EES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEE--eeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence 6999999999999999999999999 5666777776653 33 3677776654331 112
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHHcCceeeEEEEccC--CCCce
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQFRYKKHKWAISPK--SKDEV 454 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k--~~dev 454 (467)
..+|+|+..-.-... +. .++..+.+ +.=.+++ .|+..... ++.. +.+ ||+..+.....- .-..+
T Consensus 277 ~~~d~vilDPPR~G~-~~----~~~~~~~~---~~~ivYv---SCnP~tlaRDl~~-L~~-~y~~~~v~~~DmFP~T~Hv 343 (352)
T PF05958_consen 277 FKFDAVILDPPRAGL-DE----KVIELIKK---LKRIVYV---SCNPATLARDLKI-LKE-GYKLEKVQPVDMFPQTHHV 343 (352)
T ss_dssp TTESEEEE---TT-S-CH----HHHHHHHH---SSEEEEE---ES-HHHHHHHHHH-HHC-CEEEEEEEEE-SSTTSS--
T ss_pred cCCCEEEEcCCCCCc-hH----HHHHHHhc---CCeEEEE---ECCHHHHHHHHHH-Hhh-cCEEEEEEEeecCCCCCcE
Confidence 367888876544221 12 33443333 3334444 33333333 3333 333 777655443332 22233
Q ss_pred EEEEEeec
Q 012235 455 YLSALLEK 462 (467)
Q Consensus 455 yl~avlqK 462 (467)
=..++|+|
T Consensus 344 E~v~lL~r 351 (352)
T PF05958_consen 344 ETVALLER 351 (352)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 34556665
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0073 Score=55.37 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=53.1
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC-----CccEEEccCCCCccCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG-----LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.++|+|||.|.+....+-. .-.|+| +|+.+.+++.+..+. .+.+++++..++.+..+.||.++.+-.+
T Consensus 51 kl~DLgcgcGmLs~a~sm~~~e~vlG--fDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 51 KLKDLGCGCGMLSIAFSMPKNESVLG--FDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred chhhhcCchhhhHHHhhcCCCceEEe--eecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 7899999999988655544 456788 555677888776542 2688999998888888999999998766
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.023 Score=64.38 Aligned_cols=98 Identities=14% Similarity=-0.016 Sum_probs=64.3
Q ss_pred eEEEECCCccHHHHHHhhC--------------------------------------------CCEEEEEecCCCHHHHH
Q 012235 320 IGLDFGVGTGTFAARMREQ--------------------------------------------NVTIVSTALNLGAPFNE 355 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--------------------------------------------g~~V~gvdiDiS~~~l~ 355 (467)
.++|-+||+|++....+.. ...++| +|+++.+++
T Consensus 193 ~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G--~Did~~av~ 270 (702)
T PRK11783 193 PLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYG--SDIDPRVIQ 270 (702)
T ss_pred eEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEE--EECCHHHHH
Confidence 8999999999998776541 124666 666677777
Q ss_pred HHHHc----CC---ccEEEccCCCCccC--CCccceEEecccccc-ccchhhHHHHHHHHHhcc---CCCcEEEEEe
Q 012235 356 MIALR----GL---IPLYVTLNQRLPFF--DNTMDLIHTTGFMDG-WLDMLLLDFILFDWDRIL---RPGGLLWIDR 419 (467)
Q Consensus 356 ~a~~r----g~---i~~~~~d~~~Lpf~--d~sFDlVis~~~L~h-~~~~~~l~~~L~el~RvL---KPGG~LiI~~ 419 (467)
.+..+ |. +.+.++|+.+++.+ .++||+|+++...-. +.....+..+..++.+.| .+|+.+++.+
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 76543 33 67889998887654 357999999966522 222222344444444444 4899887755
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0019 Score=59.66 Aligned_cols=57 Identities=26% Similarity=0.249 Sum_probs=47.2
Q ss_pred ccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 363 IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 363 i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+.++.......+|.+++.|+|.+.++++|+.-.+. ..++++.+|+|||||+|-++.+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEEcC
Confidence 34444445667899999999999999999988764 6899999999999999988643
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.061 Score=51.29 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=63.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCC-ccCCC--ccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRL-PFFDN--TMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~L-pf~d~--sFDlVis~~~ 388 (467)
++||+=+|+|.++...+.+|. .++. +|.+..+...+.++ +...++..|+..+ +-... .||+|+..-.
T Consensus 46 ~~LDlFAGSGaLGlEAlSRGA~~~~~--vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP 123 (187)
T COG0742 46 RVLDLFAGSGALGLEALSRGAARVVF--VEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP 123 (187)
T ss_pred EEEEecCCccHhHHHHHhCCCceEEE--EecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC
Confidence 899999999999999999975 4666 55556665555432 3356777776533 11222 5999999887
Q ss_pred cccccch-hhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDM-LLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~-~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+ +..-. ........+-..+|+|+|.+++-.
T Consensus 124 y-~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 124 Y-AKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred C-ccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 7 32111 011222233568899999988843
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0041 Score=52.68 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=39.0
Q ss_pred EEECCCccHHHHHHhhC---C--CEEEEEecCCC-HHHHHHHHH---cCCccEEEccCCCC-c-cCCCccceEEeccccc
Q 012235 322 LDFGVGTGTFAARMREQ---N--VTIVSTALNLG-APFNEMIAL---RGLIPLYVTLNQRL-P-FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 322 LDIGCGtG~~a~~La~~---g--~~V~gvdiDiS-~~~l~~a~~---rg~i~~~~~d~~~L-p-f~d~sFDlVis~~~L~ 390 (467)
||+|+..|..+..+++. + .+++++|.... +...+.+++ ...+.++.++.... + +..++||+|+....-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H- 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH- 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC-
Confidence 68999999888887764 2 36788666652 122333332 23477888876433 2 335799999987642
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
-.+ .....+..+.+.|+|||.+++.+
T Consensus 80 -~~~--~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 -SYE--AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HH--HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CHH--HHHHHHHHHHHHcCCCeEEEEeC
Confidence 222 23578889999999999998865
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.039 Score=60.27 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=42.7
Q ss_pred ceEEEECCCccHHHHHHhhCC----------CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCC-----ccCC
Q 012235 319 RIGLDFGVGTGTFAARMREQN----------VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRL-----PFFD 377 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g----------~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~L-----pf~d 377 (467)
.+|||.|||+|.+...++++. ..+++ .|+++.++..+..+ + .+.+...+.... .-..
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g--~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYF--ADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeee--echhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 379999999999998887641 23455 66666666655432 2 133343332111 1123
Q ss_pred CccceEEeccccc
Q 012235 378 NTMDLIHTTGFMD 390 (467)
Q Consensus 378 ~sFDlVis~~~L~ 390 (467)
+.||+|+++-...
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999986553
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.028 Score=59.06 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=65.7
Q ss_pred eEEEECCCccHHHHHHhhC--C-CEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCcc-CCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--N-VTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPF-FDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g-~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf-~d~sFDlVis~~~L 389 (467)
+|||+.||+|..+.+++.+ | ..|++ .|+++.+.+.+.++ +. +.++.+|+..+-. ..+.||+|...- +
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~--nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFA--NDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 7999999999999999987 4 46777 66677776666442 22 5577777665421 235799998865 3
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
. .+ ..++..+.+.+++||.+.++
T Consensus 124 -G--s~---~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 -G--TP---APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -C--Cc---HHHHHHHHHhcccCCEEEEE
Confidence 2 21 36889999999999999996
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.013 Score=54.65 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=42.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCc--cCCCc-cceEEec
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLP--FFDNT-MDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lp--f~d~s-FDlVis~ 386 (467)
+|+|+.||.|..+..+++....|+++|+ ++..++.++.+ | .+.++++|...+. +..+. +|+|+.+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidi--d~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDI--DPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES---HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 7999999999999999999989999554 45555555432 3 4889999866542 22222 8999975
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.067 Score=55.75 Aligned_cols=135 Identities=12% Similarity=0.028 Sum_probs=87.6
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc-------------CCccEEEccCCCCc-cCCCccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR-------------GLIPLYVTLNQRLP-FFDNTMD 381 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r-------------g~i~~~~~d~~~Lp-f~d~sFD 381 (467)
.++||-+|.|.|.-++.+.+.. .+++- +|+.+.|++.+... ..+.++..|+..+- -..+.||
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~l--VdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITL--VDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEE--EecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 5689999999999999999873 45666 45557888877521 12556677765542 3456899
Q ss_pred eEEecccccc--ccchhhHHHHHHHHHhccCCCcEEEEE--ecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCce
Q 012235 382 LIHTTGFMDG--WLDMLLLDFILFDWDRILRPGGLLWID--RFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEV 454 (467)
Q Consensus 382 lVis~~~L~h--~~~~~~l~~~L~el~RvLKPGG~LiI~--~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~dev 454 (467)
.|+....=-. -...-....+..-+.|.|+++|.+++. +++...+-.-.+...+++.||.....++--.+-.||
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeW 444 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEW 444 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCccccc
Confidence 9996432100 000111235777889999999999994 233333222256678899999887776655555555
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.034 Score=56.21 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=79.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcCC--ccEEEccCCCC-c-
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRGL--IPLYVTLNQRL-P- 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg~--i~~~~~d~~~L-p- 374 (467)
.....+...++. .|||+.+|.|+=+..+++. ...+++ .|++..-+..+. +-|. +.....|...+ +
T Consensus 76 l~~~~L~~~~~~--~VLD~CAapGgKt~~la~~~~~~g~i~A--~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 76 LVALALDPQPGE--RVLDMCAAPGGKTTHLAELMGNKGEIVA--NDISPKRLKRLKENLKRLGVFNVIVINADARKLDPK 151 (283)
T ss_dssp HHHHHHTTTTTS--EEEESSCTTSHHHHHHHHHTTTTSEEEE--EESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH
T ss_pred cccccccccccc--cccccccCCCCceeeeeecccchhHHHH--hccCHHHHHHHHHHHHhcCCceEEEEeecccccccc
Confidence 344556677777 8999999999888888876 357777 555555444443 3343 44444565544 2
Q ss_pred cCCCccceEEec----c--ccccccc------h-------hhHHHHHHHHHhcc----CCCcEEEEEecccCCCCHH-HH
Q 012235 375 FFDNTMDLIHTT----G--FMDGWLD------M-------LLLDFILFDWDRIL----RPGGLLWIDRFFCNKKDLD-DY 430 (467)
Q Consensus 375 f~d~sFDlVis~----~--~L~h~~~------~-------~~l~~~L~el~RvL----KPGG~LiI~~~~~~~~~~~-~~ 430 (467)
.....||.|+.. . ++..-++ . ..-..+|..+.+.+ ||||+++.++-....++.+ ..
T Consensus 152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV 231 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVV 231 (283)
T ss_dssp HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHH
T ss_pred ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHH
Confidence 233469999962 1 2211100 0 11246888999999 9999999988766554444 45
Q ss_pred HHHHHHc
Q 012235 431 MYMFLQF 437 (467)
Q Consensus 431 ~~~i~~~ 437 (467)
...+++.
T Consensus 232 ~~fl~~~ 238 (283)
T PF01189_consen 232 EKFLKRH 238 (283)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 5555554
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.076 Score=51.78 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=65.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-----CccEEEc-cCCCCc-cCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-----LIPLYVT-LNQRLP-FFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~-d~~~Lp-f~d~sFDlVis~~~L~h~ 392 (467)
+||.||-|-|.....+.++...-.-+ ++..+...+..+..+ ++-.+.+ +-..++ ++++.||.|+-..--.++
T Consensus 104 rvLnVGFGMgIidT~iQe~~p~~H~I-iE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~y 182 (271)
T KOG1709|consen 104 RVLNVGFGMGIIDTFIQEAPPDEHWI-IEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELY 182 (271)
T ss_pred eEEEeccchHHHHHHHhhcCCcceEE-EecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechhhHH
Confidence 89999999999999888874322211 344455566665543 2333333 333333 568889999975443343
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
.+ +..+.+.+.|+|||+|.|-+....+..
T Consensus 183 Ed---l~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 183 ED---LRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred HH---HHHHHHHHhhhcCCCceEEEecCcccc
Confidence 33 467888999999999998775554443
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.097 Score=52.57 Aligned_cols=106 Identities=13% Similarity=0.005 Sum_probs=58.2
Q ss_pred CCceEEEECCCcc--HHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcCC--ccEEEccCCCCc--c----CCCc
Q 012235 317 ETRIGLDFGVGTG--TFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRGL--IPLYVTLNQRLP--F----FDNT 379 (467)
Q Consensus 317 ~~r~VLDIGCGtG--~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg~--i~~~~~d~~~Lp--f----~d~s 379 (467)
+++..||||||-= .....++++ ...|+-+|.| +-.+..++ .... ..++.+|..+.. + -.+-
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~D--Pvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDND--PVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESS--HHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCC--chHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 4778999999943 345555554 6788886666 33333222 2222 668888876532 1 1123
Q ss_pred cc-----eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 380 MD-----LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 380 FD-----lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+| .|+...+++|..+.+....++..+...|.||.+|+|++.....
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 44 4666777855666577899999999999999999999887643
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.2 Score=49.79 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=63.1
Q ss_pred ceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc--------C-CccE-EEccCCCCc--cCCCc-cceEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR--------G-LIPL-YVTLNQRLP--FFDNT-MDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r--------g-~i~~-~~~d~~~Lp--f~d~s-FDlVi 384 (467)
.+||++|+|+|..+..++.. +..|.-+|.-.....++..... | .+.+ ...|....+ +.... ||+|+
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dlil 167 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLIL 167 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEE
Confidence 47999999999888777764 6777775555444444444322 1 1111 112322222 22233 99999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
++.++++-... +.++.-+...|-.+|.+++.......
T Consensus 168 asDvvy~~~~~---e~Lv~tla~ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 168 ASDVVYEEESF---EGLVKTLAFLLAKDGTIFLAYPLRRD 204 (248)
T ss_pred EeeeeecCCcc---hhHHHHHHHHHhcCCeEEEEEecccc
Confidence 99998644444 56777788888888866665554443
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.058 Score=48.53 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=29.5
Q ss_pred CceEEEECCCccHHHHHHhh-----C-CCEEEEEecCCCHHHHHHHH
Q 012235 318 TRIGLDFGVGTGTFAARMRE-----Q-NVTIVSTALNLGAPFNEMIA 358 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~-----~-g~~V~gvdiDiS~~~l~~a~ 358 (467)
...|+|+|||.|+++..|+. . +..|+++|.+ +...+.+.
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~--~~~~~~a~ 70 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCN--ESLVESAQ 70 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECC--cHHHHHHH
Confidence 34899999999999999998 3 7888885554 44444443
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.08 Score=50.89 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=63.5
Q ss_pred hHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHH----HHcCC-ccEEEccCCCCccC
Q 012235 303 VDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMI----ALRGL-IPLYVTLNQRLPFF 376 (467)
Q Consensus 303 ~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a----~~rg~-i~~~~~d~~~Lpf~ 376 (467)
...+++..=+.-.+. +|||+|+|+|..+...+..|. .|++.|+| +...+.+ +.++. +.+...|.-. .
T Consensus 67 lAR~i~~~PetVrgk--rVLd~gagsgLvaIAaa~aGA~~v~a~d~~--P~~~~ai~lNa~angv~i~~~~~d~~g---~ 139 (218)
T COG3897 67 LARYIDDHPETVRGK--RVLDLGAGSGLVAIAAARAGAAEVVAADID--PWLEQAIRLNAAANGVSILFTHADLIG---S 139 (218)
T ss_pred HHHHHhcCccccccc--eeeecccccChHHHHHHHhhhHHHHhcCCC--hHHHHHhhcchhhccceeEEeeccccC---C
Confidence 333444332333344 899999999999888887764 46665555 3333322 22332 4555555443 5
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcE-EEEEeccc
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGL-LWIDRFFC 422 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~-LiI~~~~~ 422 (467)
+..||+|+...+++.-... ..++. ..+.|+..|. +++.++..
T Consensus 140 ~~~~Dl~LagDlfy~~~~a---~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 140 PPAFDLLLAGDLFYNHTEA---DRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred CcceeEEEeeceecCchHH---HHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 7889999999887433222 35556 5555555554 44445443
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.19 Score=45.87 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=69.0
Q ss_pred EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc--CCCccceEEecccccc------ccchhhHHHHHHHH
Q 012235 341 TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF--FDNTMDLIHTTGFMDG------WLDMLLLDFILFDW 405 (467)
Q Consensus 341 ~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf--~d~sFDlVis~~~L~h------~~~~~~l~~~L~el 405 (467)
+|++ .|+-+.+++..+++ + .+.+++.+-+++.- +++.+|+|+.|...-. ....+..-.++..+
T Consensus 1 kVya--FDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYA--FDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEE--EES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEE--EECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 3666 66777777766543 2 37788877666652 2358999998865422 12233345789999
Q ss_pred HhccCCCcEEEEEecccCCCCH---HHHHHHHHH---cCceeeEEEEccCCCCceEEEEEeec
Q 012235 406 DRILRPGGLLWIDRFFCNKKDL---DDYMYMFLQ---FRYKKHKWAISPKSKDEVYLSALLEK 462 (467)
Q Consensus 406 ~RvLKPGG~LiI~~~~~~~~~~---~~~~~~i~~---~Gf~~l~W~~~~k~~devyl~avlqK 462 (467)
.++|+|||.+.++.+..+.... +.+.+++.. -.|..+++......+..-++ .+.||
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l-~~ieK 140 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLL-VIIEK 140 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EE-EEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEE-EEEEC
Confidence 9999999999999988776532 244444444 35677777776664443333 33444
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.049 Score=50.88 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=71.7
Q ss_pred ceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHH---HHcCC---cc-E--EE--ccCCCCccCCCccceEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMI---ALRGL---IP-L--YV--TLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a---~~rg~---i~-~--~~--~d~~~Lpf~d~sFDlVi 384 (467)
+.||++|.|.-.++..|... ...|.-+ |-.+..++.. ..++. .. . +. -+........++||+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~lt--dgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLT--DGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEe--cCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 47999999966555555433 2334442 3334444433 32321 11 1 10 01222234457999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
|..++ .+... .+.++.-+.+.|+|.|..++..+-. .+..+.+.+.+...||...
T Consensus 109 aADCl-FfdE~--h~sLvdtIk~lL~p~g~Al~fsPRR-g~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 109 AADCL-FFDEH--HESLVDTIKSLLRPSGRALLFSPRR-GQSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred eccch-hHHHH--HHHHHHHHHHHhCcccceeEecCcc-cchHHHHHHHHHhceeEEE
Confidence 99998 44443 3678999999999999977754432 3456688888888887543
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.42 Score=49.54 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=58.6
Q ss_pred HHHHHhc-CCCCCCceEEEECCCccHHHHHHhhC------------C------CEEEEEecCCCHHHHHHH---------
Q 012235 306 LISDILA-IKPGETRIGLDFGVGTGTFAARMREQ------------N------VTIVSTALNLGAPFNEMI--------- 357 (467)
Q Consensus 306 ~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~------------g------~~V~gvdiDiS~~~l~~a--------- 357 (467)
.|.+++. ....+.-+|+|+||..|..+..+.+. + ++|+--|+-... .....
T Consensus 4 ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~ND-Fn~lF~~l~~~~~~ 82 (334)
T PF03492_consen 4 AIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSND-FNTLFKSLPSFQQS 82 (334)
T ss_dssp HHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS--HHHHHHCHHHHHHH
T ss_pred HHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCcc-HHHHHHhChhhhhc
Confidence 4455543 22233347899999999877665432 2 355554443221 11111
Q ss_pred -HHcCC--ccEEEccCCCCccCCCccceEEeccccccccch-------------------------------------hh
Q 012235 358 -ALRGL--IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM-------------------------------------LL 397 (467)
Q Consensus 358 -~~rg~--i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~-------------------------------------~~ 397 (467)
...+. +..+-+....--||+++.|+++|+.++ ||... .+
T Consensus 83 ~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D 161 (334)
T PF03492_consen 83 LKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKD 161 (334)
T ss_dssp HHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHH
T ss_pred cCCCceEEEEecCchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHH
Confidence 11122 222233444444889999999999999 88521 11
Q ss_pred HHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+..+|.-=.+-|+|||.+++..+....
T Consensus 162 ~~~FL~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 162 FSSFLKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHHHHHhhheeccCcEEEEEEeeccc
Confidence 223344445668899999998765544
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.21 Score=51.83 Aligned_cols=97 Identities=20% Similarity=0.163 Sum_probs=69.5
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEcc-CCCCccCCCccceEEecc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTL-NQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d-~~~Lpf~d~sFDlVis~~ 387 (467)
...++++ .|+=+|+| .|..+..+++ .|.+|++ +|.++...+.+.+-|.-.++.+. .....--.+.||+|+..-
T Consensus 162 ~~~~pG~--~V~I~G~GGlGh~avQ~Aka~ga~Via--~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 162 ANVKPGK--WVAVVGAGGLGHMAVQYAKAMGAEVIA--ITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred cCCCCCC--EEEEECCcHHHHHHHHHHHHcCCeEEE--EeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 4566777 77877776 4578888888 5999999 77788888888888764455433 222221123499998766
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
. . ..+....+.||+||.+++.-..
T Consensus 238 ~-~---------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G-P---------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C-h---------hhHHHHHHHHhcCCEEEEECCC
Confidence 5 2 5788899999999999997655
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.62 Score=43.49 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=76.0
Q ss_pred ECCCccHHHHHHhhC---CCEEEEEecCCCHHHH----------HHHHHcCCccEEE-ccCCCCc----cCCCccceEEe
Q 012235 324 FGVGTGTFAARMREQ---NVTIVSTALNLGAPFN----------EMIALRGLIPLYV-TLNQRLP----FFDNTMDLIHT 385 (467)
Q Consensus 324 IGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l----------~~a~~rg~i~~~~-~d~~~Lp----f~d~sFDlVis 385 (467)
+|=|.=+|+..|++. +..++++..|...... +.+.+.| +.++. .|+..+. ...+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEEEE
Confidence 455555788888876 5578888787654332 2232334 33333 3666664 35688999999
Q ss_pred ccccccc----------cchhhHHHHHHHHHhccCCCcEEEEEecccCC-CCHHHHHHHHHHcCceeeE
Q 012235 386 TGFMDGW----------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-KDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 386 ~~~L~h~----------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-~~~~~~~~~i~~~Gf~~l~ 443 (467)
++.-... .....+..++..+.++|+++|.+.|+...... +.+ .+.++.++.|+....
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W-~i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSW-NIEELAAEAGLVLVR 149 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccc-cHHHHHHhcCCEEEE
Confidence 9875320 12234567899999999999999987655433 333 555777788876553
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.36 Score=50.76 Aligned_cols=109 Identities=17% Similarity=0.014 Sum_probs=73.9
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC-----------------------------------------EEEEE
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNV-----------------------------------------TIVST 345 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-----------------------------------------~V~gv 345 (467)
|..+.+..++. .++|==||+|+++...+..+. .++|
T Consensus 183 il~lagw~~~~--pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G- 259 (381)
T COG0116 183 ILLLAGWKPDE--PLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG- 259 (381)
T ss_pred HHHHcCCCCCC--ccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE-
Confidence 33344455554 789999999999988776543 2456
Q ss_pred ecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc-cccchh----hHHHHHHHHHhccCCCc
Q 012235 346 ALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD-GWLDML----LLDFILFDWDRILRPGG 413 (467)
Q Consensus 346 diDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~-h~~~~~----~l~~~L~el~RvLKPGG 413 (467)
.|+...+++.|+.+ | .|.|.++|+..++-+-+.+|+|+||-..- .+.+.. ....+...+.+.++--+
T Consensus 260 -~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 260 -SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred -ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 67778888877643 3 38899999999875548999999986541 222221 12345556677888777
Q ss_pred EEEEEe
Q 012235 414 LLWIDR 419 (467)
Q Consensus 414 ~LiI~~ 419 (467)
.+++++
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 887754
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.27 Score=51.31 Aligned_cols=135 Identities=18% Similarity=0.105 Sum_probs=79.9
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCCC------EEEEEecCCCH-HHHHHHHHcCC---ccEEEccCCCCc-----
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQNV------TIVSTALNLGA-PFNEMIALRGL---IPLYVTLNQRLP----- 374 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~------~V~gvdiDiS~-~~l~~a~~rg~---i~~~~~d~~~Lp----- 374 (467)
+|++++++ +|||+.+..|.=++.|.+..+ .|++-|+|.+. .++.....+-. +.+...++..+|
T Consensus 150 ~L~v~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 150 ALGVKPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred hcccCCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc
Confidence 35678888 999999999998888887643 56775555332 33333333311 222222333332
Q ss_pred ----cCCCccceEEec------ccccc--------ccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-H
Q 012235 375 ----FFDNTMDLIHTT------GFMDG--------WLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-D 429 (467)
Q Consensus 375 ----f~d~sFDlVis~------~~L~h--------~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~ 429 (467)
.....||-|++. .++.+ |... ...-.++..-.+.||+||.++.++..-..-+.+ .
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaV 307 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAV 307 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHH
Confidence 233469999863 11111 1111 011257888999999999999988766544444 6
Q ss_pred HHHHHHHcCceeeEEEEc
Q 012235 430 YMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 430 ~~~~i~~~Gf~~l~W~~~ 447 (467)
..++++..| ..+.|+..
T Consensus 308 V~~~L~~~~-~~~~lv~~ 324 (375)
T KOG2198|consen 308 VQEALQKVG-GAVELVDV 324 (375)
T ss_pred HHHHHHHhc-Ccccceee
Confidence 666777763 44555443
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.27 Score=52.15 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=73.4
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcCCcc--EEEccCCCCc---cC
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRGLIP--LYVTLNQRLP---FF 376 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg~i~--~~~~d~~~Lp---f~ 376 (467)
..++.+++. +|||+.+..|.=+.++|.. .-.|++ .|.+..-+..+. +-|.-. +...|...+| ++
T Consensus 235 ~aL~Pq~gE--RIlDmcAAPGGKTt~IAalMkn~G~I~A--nD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~ 310 (460)
T KOG1122|consen 235 MALDPQPGE--RILDMCAAPGGKTTHIAALMKNTGVIFA--NDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFP 310 (460)
T ss_pred eecCCCCCC--eecchhcCCCchHHHHHHHHcCCceEEe--cccchHHHHHHHHHHHHhCCCceEEEccCcccccccccC
Confidence 345566676 9999999999655555543 223455 665555444433 335433 3344555554 43
Q ss_pred CCccceEEe----cc--ccc-----cccc--------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHH-HHHHHHH
Q 012235 377 DNTMDLIHT----TG--FMD-----GWLD--------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDD-YMYMFLQ 436 (467)
Q Consensus 377 d~sFDlVis----~~--~L~-----h~~~--------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~-~~~~i~~ 436 (467)
. +||-|+. +. ++. -+.. ....+++|......+++||+|+.++.....++.+. +...+.+
T Consensus 311 ~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K 389 (460)
T KOG1122|consen 311 G-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKK 389 (460)
T ss_pred c-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHh
Confidence 4 9999994 33 221 0000 00124788889999999999999988776655553 3334454
Q ss_pred c
Q 012235 437 F 437 (467)
Q Consensus 437 ~ 437 (467)
.
T Consensus 390 ~ 390 (460)
T KOG1122|consen 390 R 390 (460)
T ss_pred C
Confidence 3
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.2 Score=44.78 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=81.5
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC--CCccceEEeccccccc-----
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF--DNTMDLIHTTGFMDGW----- 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~--d~sFDlVis~~~L~h~----- 392 (467)
+++|+-||.|.++..+.+.|.+++. .+|+.+.+.+....+..-..+.+|+..+... ...+|+++....=..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~-a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVA-ANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEE-EEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence 5899999999999999888887543 3677777777766654333566777666532 3579999976422111
Q ss_pred ----cchh-hHHHHHHHHHhccCCCcEEEEEec-cc-C---CCCHHHHHHHHHHcCceeeEEEEccC-------CCCceE
Q 012235 393 ----LDML-LLDFILFDWDRILRPGGLLWIDRF-FC-N---KKDLDDYMYMFLQFRYKKHKWAISPK-------SKDEVY 455 (467)
Q Consensus 393 ----~~~~-~l~~~L~el~RvLKPGG~LiI~~~-~~-~---~~~~~~~~~~i~~~Gf~~l~W~~~~k-------~~devy 455 (467)
.+.. .+-..+.++.+.++|. ++++-.- .. . ....+.+.+.++.+||.. .|.+..- .+..+|
T Consensus 81 ~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~-~~~~l~a~~~GvPQ~R~R~~ 158 (275)
T cd00315 81 RKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNV-YWKLLNASDYGVPQNRERVF 158 (275)
T ss_pred cCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEE-EEEEEEHHHcCCCCCCcEEE
Confidence 1111 1112233444555776 3333221 11 1 123447888889999974 4443332 456677
Q ss_pred EEEEe
Q 012235 456 LSALL 460 (467)
Q Consensus 456 l~avl 460 (467)
+.+..
T Consensus 159 ~ia~~ 163 (275)
T cd00315 159 IIGIR 163 (275)
T ss_pred EEEEe
Confidence 77654
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.16 Score=49.66 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=50.4
Q ss_pred cEEEccCCCC--ccCCCccceEEeccccc----cccc--------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHH
Q 012235 364 PLYVTLNQRL--PFFDNTMDLIHTTGFMD----GWLD--------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDD 429 (467)
Q Consensus 364 ~~~~~d~~~L--pf~d~sFDlVis~~~L~----h~~~--------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~ 429 (467)
.++++|+.++ .++++++|+|+..-... +... .+-.+..+.|+.|+|||||.+++.. .......
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~---~~~~~~~ 79 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY---GWNRVDR 79 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe---ccccHHH
Confidence 4566775443 46788899998874331 0000 1123578899999999999987622 1222345
Q ss_pred HHHHHHHcCcee---eEEEE
Q 012235 430 YMYMFLQFRYKK---HKWAI 446 (467)
Q Consensus 430 ~~~~i~~~Gf~~---l~W~~ 446 (467)
+...++..||.. +-|..
T Consensus 80 ~~~al~~~GF~l~~~IiW~K 99 (227)
T PRK13699 80 FMAAWKNAGFSVVGHLVFTK 99 (227)
T ss_pred HHHHHHHCCCEEeeEEEEEC
Confidence 677888889853 45653
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.4 Score=42.72 Aligned_cols=157 Identities=14% Similarity=0.113 Sum_probs=92.4
Q ss_pred ccccccccCCcChHHHHHHH---hcCCCCCCceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCH----HHHHHHHHcC
Q 012235 291 EKPKWVANRSVPVDFLISDI---LAIKPGETRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGA----PFNEMIALRG 361 (467)
Q Consensus 291 e~~~W~~~~~~~~d~~I~~l---L~l~~g~~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~----~~l~~a~~rg 361 (467)
+-+.|.- ........|..- +.+++++ +||=+|+.+|+...++++- + -.+++ ++.|+ +.+..+.+|.
T Consensus 50 eYR~Wnp-~RSKLaAaIl~Gl~~~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYa--VEfs~R~~reLl~~a~~R~ 124 (231)
T COG1889 50 EYREWNP-RRSKLAAAILKGLKNFPIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYA--VEFSPRPMRELLDVAEKRP 124 (231)
T ss_pred ceeeeCc-chhHHHHHHHcCcccCCcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEE--EEecchhHHHHHHHHHhCC
Confidence 4566765 233333333322 3466777 9999999999999998876 3 34666 44444 4566677777
Q ss_pred CccEEEccCCCCc---cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc----CCCCHHHHH---
Q 012235 362 LIPLYVTLNQRLP---FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC----NKKDLDDYM--- 431 (467)
Q Consensus 362 ~i~~~~~d~~~Lp---f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~----~~~~~~~~~--- 431 (467)
++--+..|+..-. ..-+..|+|+..-+- +...+-+..++..-||+||+++++--.. ..+..+.+.
T Consensus 125 Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQ-----p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev 199 (231)
T COG1889 125 NIIPILEDARKPEKYRHLVEKVDVIYQDVAQ-----PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEV 199 (231)
T ss_pred CceeeecccCCcHHhhhhcccccEEEEecCC-----chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHH
Confidence 6544555654321 223458888875443 3335678899999999999887753322 222222333
Q ss_pred HHHHHcCceeeEEEEccC-CCCceEEE
Q 012235 432 YMFLQFRYKKHKWAISPK-SKDEVYLS 457 (467)
Q Consensus 432 ~~i~~~Gf~~l~W~~~~k-~~devyl~ 457 (467)
+.++.-+|+.+.-..... .+|...+.
T Consensus 200 ~kL~~~~f~i~e~~~LePye~DH~~i~ 226 (231)
T COG1889 200 EKLEEGGFEILEVVDLEPYEKDHALIV 226 (231)
T ss_pred HHHHhcCceeeEEeccCCcccceEEEE
Confidence 345555666665443332 45544443
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.51 Score=47.10 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=60.7
Q ss_pred cCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC------ccCCCccceE
Q 012235 312 AIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL------PFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L------pf~d~sFDlV 383 (467)
.+.+++ +||..|+| .|..+..+++. |.+|+. ++.++...+.+++.+. ..+....... ....+.+|+|
T Consensus 162 ~~~~~~--~vli~g~g~vG~~~~~la~~~G~~V~~--~~~s~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 162 EVKPGE--TVLVIGLGGLGLNAVQIAKAMGAAVIA--VDIKEEKLELAKELGA-DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCC--EEEEECCcHHHHHHHHHHHHcCCEEEE--EcCCHHHHHHHHHhCC-CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 355565 77888876 46777777765 888777 5556666777766553 3332221111 1234679988
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+..... ...+.++.+.|+++|.++...
T Consensus 237 id~~g~---------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 FDFVGT---------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EECCCC---------HHHHHHHHHHhhcCCEEEEEC
Confidence 865433 257888999999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.1 Score=46.13 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=28.0
Q ss_pred eEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHH
Q 012235 320 IGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIA 358 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~ 358 (467)
++||+|||.|.++..+++.+. ++++ ++..+.+.+.++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~--~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIA--FEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEE--EecCHHHHHHHH
Confidence 479999999999999998865 4777 555566655544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.3 Score=51.64 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=34.6
Q ss_pred ccCCCccceEEeccccccccch--h----------------------------------hHHHHHHHHHhccCCCcEEEE
Q 012235 374 PFFDNTMDLIHTTGFMDGWLDM--L----------------------------------LLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 374 pf~d~sFDlVis~~~L~h~~~~--~----------------------------------~l~~~L~el~RvLKPGG~LiI 417 (467)
-||+++.++++|+.++ ||... + ++..+|.-=.+-|.|||.+++
T Consensus 157 LfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred ccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 3789999999999999 88642 0 112233334566889999999
Q ss_pred EecccC
Q 012235 418 DRFFCN 423 (467)
Q Consensus 418 ~~~~~~ 423 (467)
......
T Consensus 236 ~~~Gr~ 241 (386)
T PLN02668 236 VCLGRT 241 (386)
T ss_pred EEecCC
Confidence 766553
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.11 Score=56.23 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=47.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH----HcCC--ccEEEccCCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA----LRGL--IPLYVTLNQR 372 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~----~rg~--i~~~~~d~~~ 372 (467)
+|.+.+.+..+. .+||+-||||.++..++++-..|+|+ .+++.+++-|. .+|. .+|+++-+++
T Consensus 374 ~i~e~~~l~~~k--~llDv~CGTG~iglala~~~~~ViGv--Ei~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 374 TIGEWAGLPADK--TLLDVCCGTGTIGLALARGVKRVIGV--EISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHHhCCCCCc--EEEEEeecCCceehhhhccccceeee--ecChhhcchhhhcchhcCccceeeeecchhh
Confidence 577788887776 89999999999999999998889994 44555555443 3343 6788885444
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.17 Score=48.56 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=63.9
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
.+.|+|+|+|.++...++..-.|+++..| +...+.+.++ | .+.++.+|+.+..| ..-|+|+|-..=....
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~d--Pk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi 110 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKD--PKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALI 110 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecC--cHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhh
Confidence 78999999999998888887889996655 3333444433 3 26788899988887 5579999854322222
Q ss_pred chhhHHHHHHHHHhccCCCcEEEE
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
... ...++..+...||-+|.++=
T Consensus 111 ~E~-qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEK-QVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred ccc-ccHHHHHHHHHhhcCCcccc
Confidence 221 23567777778888888643
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.32 Score=47.17 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=52.0
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC------CCEEEEEecCCCHHHHHHHHH---cCCccEEEccCCCCccC------
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ------NVTIVSTALNLGAPFNEMIAL---RGLIPLYVTLNQRLPFF------ 376 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~------g~~V~gvdiDiS~~~l~~a~~---rg~i~~~~~d~~~Lpf~------ 376 (467)
.++|. .|+++|.-.|+-+..+|+. ...|+|+|+|+.......... ...|.++++|..+...-
T Consensus 30 ~~kPd---~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 30 ELKPD---LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp HH--S---EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS
T ss_pred HhCCC---eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHh
Confidence 45655 8999999998766666542 468999998876543332222 25589999987654311
Q ss_pred --CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 377 --DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 377 --d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
...-.+|+-... |.... +...|+-...++++|+++++.
T Consensus 107 ~~~~~~vlVilDs~--H~~~h--vl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 107 ASPPHPVLVILDSS--HTHEH--VLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp ----SSEEEEESS------SS--HHHHHHHHHHT--TT-EEEET
T ss_pred hccCCceEEEECCC--ccHHH--HHHHHHHhCccCCCCCEEEEE
Confidence 122334443222 33333 346777899999999999984
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.32 E-value=2.7 Score=43.06 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=32.6
Q ss_pred ceEEEECCCccHHHHHHhh--CCCEEEEEecCCCHHHHHHHH----Hc-C---CccEEEccC-----CCCccCCCccceE
Q 012235 319 RIGLDFGVGTGTFAARMRE--QNVTIVSTALNLGAPFNEMIA----LR-G---LIPLYVTLN-----QRLPFFDNTMDLI 383 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~--~g~~V~gvdiDiS~~~l~~a~----~r-g---~i~~~~~d~-----~~Lpf~d~sFDlV 383 (467)
-++||||+|...+-..|.. .|...+|+|+| +..++.|+ .+ + .|.++.... ..+...+..||+.
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID--~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDID--PKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCC--HHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 3799999998844333332 38999997776 44444443 23 2 355554321 1122334689999
Q ss_pred Eeccccc
Q 012235 384 HTTGFMD 390 (467)
Q Consensus 384 is~~~L~ 390 (467)
+|+-.++
T Consensus 182 mCNPPFy 188 (299)
T PF05971_consen 182 MCNPPFY 188 (299)
T ss_dssp EE-----
T ss_pred ecCCccc
Confidence 9988773
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.094 Score=45.82 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=30.8
Q ss_pred ccceEEecccccccc----chhhHHHHHHHHHhccCCCcEEEEE
Q 012235 379 TMDLIHTTGFMDGWL----DMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 379 sFDlVis~~~L~h~~----~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.||+|+|..+. -|. .++++..++..+++.|+|||.|++.
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998765 443 3556889999999999999999994
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.21 Score=51.86 Aligned_cols=106 Identities=16% Similarity=0.058 Sum_probs=59.4
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEE-EecCCCHHHHHHHHH--cCC----ccEEEcc--CCCCccC-CCccceEEeccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVS-TALNLGAPFNEMIAL--RGL----IPLYVTL--NQRLPFF-DNTMDLIHTTGF 388 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~g-vdiDiS~~~l~~a~~--rg~----i~~~~~d--~~~Lpf~-d~sFDlVis~~~ 388 (467)
+.+||+|.|.|+-+.++..--.+.-. +-+..++...+.... ++. .++-..+ ..+++++ ...|++|+...-
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~e 194 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDE 194 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhhh
Confidence 46999999999876655433111111 113334332222211 111 1222222 2244443 356888777665
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
|.+......+...++.+..++.|||.|+|.+...+.
T Consensus 195 Ll~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 195 LLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 556555544556889999999999999998765443
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.42 Score=46.38 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=51.5
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHH-------HHc---C---CccEEEccCC-CCc--cCCCccceE
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMI-------ALR---G---LIPLYVTLNQ-RLP--FFDNTMDLI 383 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a-------~~r---g---~i~~~~~d~~-~Lp--f~d~sFDlV 383 (467)
...|||||.|.+...|+....+..-.++++-....+.. +.. + ++.+...++. -+| |..++.+-.
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 47899999999999999885443333355433222222 211 1 1334444322 222 222222222
Q ss_pred Eeccccccccchh-----hHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDML-----LLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~-----~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+..+.=-|+.... .-...+.+..-+|++||.++..+
T Consensus 143 ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 143 FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 2111111322110 01367889999999999988754
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.93 Score=46.64 Aligned_cols=121 Identities=16% Similarity=0.032 Sum_probs=74.5
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHH---H----HHcCC---ccEEE----------------------
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEM---I----ALRGL---IPLYV---------------------- 367 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~---a----~~rg~---i~~~~---------------------- 367 (467)
.||-=|||.|.++..|+..|..+-| -+.|--|+-. + ...+. -+|++
T Consensus 153 ~iLvPGaGlGRLa~dla~~G~~~qG--NEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 153 RILVPGAGLGRLAYDLACLGFKCQG--NEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred eEEecCCCchhHHHHHHHhcccccc--cHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 5788999999999999999988887 3444444211 1 11110 11111
Q ss_pred --------------ccCCCC---ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec-----ccCCC
Q 012235 368 --------------TLNQRL---PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF-----FCNKK 425 (467)
Q Consensus 368 --------------~d~~~L---pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~-----~~~~~ 425 (467)
||..+. +-..++||+|+..+.+. -... +-..+.-+..+|||||+++=..+ .....
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID-Ta~N--ileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID-TAHN--ILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee-chHH--HHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 111111 01124699999887662 2222 45789999999999999654322 11111
Q ss_pred ---------CHHHHHHHHHHcCceeeEEE
Q 012235 426 ---------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 426 ---------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
..+++..+....||+.++-.
T Consensus 308 ~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 308 VENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CcccccccccHHHHHHHHHhcCcEEEEee
Confidence 34578888899999887665
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.17 Score=49.59 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=59.8
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC----ccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL----PFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L----pf~d~sFDlVis~~~ 388 (467)
.|+|.-||.|+.+...+.++..|+++|+|. .-+..++.+ | .+.|+++|..++ .+...-+|+|..+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisIdiDP--ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp- 173 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAIDIDP--VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP- 173 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEEeccH--HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC-
Confidence 789999999999999999999999966664 445555432 2 378999986543 23333455666543
Q ss_pred cccccchhhHHHHHHHHHhccCCCcE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGL 414 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~ 414 (467)
.|..+..+..-+.++...++|.|.
T Consensus 174 --pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 174 --PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred --CCCCcchhhhhhhhhhhhcchhHH
Confidence 344443345566666677777654
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.6 Score=43.41 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=65.6
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCH----HHHHHHHHcCC-ccEEEccCCCCc---cCCCccce
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGA----PFNEMIALRGL-IPLYVTLNQRLP---FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~----~~l~~a~~rg~-i~~~~~d~~~Lp---f~d~sFDl 382 (467)
-++++. +||=+|+++|+...+..+- |..-+.++++.|. ..+..|.+|.+ ++++. |+..-. ..-.-.|+
T Consensus 153 hikpGs--KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiE-DArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 153 HIKPGS--KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIE-DARHPAKYRMLVGMVDV 229 (317)
T ss_pred eecCCc--eEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeec-cCCCchheeeeeeeEEE
Confidence 467887 8999999999988888776 4432223344443 56677777776 45443 433211 12235677
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|++.-+- ++..+.+..+..-.||+||.|+++.-
T Consensus 230 IFaDvaq-----pdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 230 IFADVAQ-----PDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred EeccCCC-----chhhhhhhhhhhhhhccCCeEEEEEe
Confidence 7765443 33345677888999999999999643
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.50 E-value=1 Score=45.50 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=52.4
Q ss_pred CceEEEECCCccHHHHHH-hhC---CCEEEEEecCCCHHHHHHHHH--------cCCccEEEccCCCCccCCCccceEEe
Q 012235 318 TRIGLDFGVGTGTFAARM-REQ---NVTIVSTALNLGAPFNEMIAL--------RGLIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~L-a~~---g~~V~gvdiDiS~~~l~~a~~--------rg~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.++|+=||+|.=-++.-+ +++ +..++++|+| +.+++.+++ ...+.++.+|....+..-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d--~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDID--PEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESS--HHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 358999999977555444 433 4567775554 555544422 12378888998777665578999997
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.... ..... .-..++..+.+.++||..+++-.
T Consensus 199 AalV-g~~~e-~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALV-GMDAE-PKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT--S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhc-ccccc-hHHHHHHHHHhhCCCCcEEEEec
Confidence 6655 22211 23689999999999999988843
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.06 E-value=10 Score=37.25 Aligned_cols=133 Identities=15% Similarity=0.074 Sum_probs=82.2
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHH----HHcCC---ccEEEccCCCCccC-CCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMI----ALRGL---IPLYVTLNQRLPFF-DNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a----~~rg~---i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h 391 (467)
++.||||=.|++..+|.+.+..-.++..|+++.-++.+ .+.++ +....+|... ++. +..+|.|+-.+.--
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~~d~~d~ivIAGMGG- 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLELEDEIDVIVIAGMGG- 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCccCCcCEEEEeCCcH-
Confidence 48999999999999999987655555566555444433 44444 4555566522 333 34789887654321
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecC
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKP 463 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP 463 (467)
.....++.+-..-|+.==.|++ .+......+++++...+|....=.... .++..|-.-+.+|-
T Consensus 97 ----~lI~~ILee~~~~l~~~~rlIL----QPn~~~~~LR~~L~~~~~~I~~E~ile-E~~kiYEIlv~e~~ 159 (226)
T COG2384 97 ----TLIREILEEGKEKLKGVERLIL----QPNIHTYELREWLSANSYEIKAETILE-EDGKIYEILVVEKS 159 (226)
T ss_pred ----HHHHHHHHHhhhhhcCcceEEE----CCCCCHHHHHHHHHhCCceeeeeeeec-ccCeEEEEEEEecC
Confidence 1135677777777774445666 444555588888888877655333222 34556766666654
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.8 Score=45.05 Aligned_cols=106 Identities=18% Similarity=0.069 Sum_probs=64.0
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCC-C-----cc-CCCc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-L-----PF-FDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-L-----pf-~d~s 379 (467)
...+.+++ +||.+|+|. |..+..+++. |. .+++ ++.++...+.+.+.+...++.....+ + .+ ..+.
T Consensus 179 ~~~~~~g~--~VlV~g~G~vG~~~~~la~~~g~~~vi~--~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 179 LAEVKPGD--TVAVWGCGPVGLFAARSAKLLGAERVIA--IDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred hccCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCC
Confidence 34455665 899999987 8888888776 65 4777 56667777777776333332221111 1 11 2346
Q ss_pred cceEEeccccc-------ccc-----chhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMD-------GWL-----DMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~-------h~~-----~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+-.-.-. +.. ...+....+.++.+.|+|+|.+++..
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 99998743210 000 00001357899999999999998864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.45 Score=46.93 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=64.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC--------CC---EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ--------NV---TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP- 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--------g~---~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp- 374 (467)
+++-.++-.| .++|+|+.+..|.++..|.++ +. .++++|+-. ++--.| +--+++|+....
T Consensus 32 ideef~i~~g-v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~------MaPI~G-V~qlq~DIT~~st 103 (294)
T KOG1099|consen 32 IDEEFQIFEG-VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP------MAPIEG-VIQLQGDITSAST 103 (294)
T ss_pred hhhhhhHHhh-hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc------CCccCc-eEEeecccCCHhH
Confidence 3444444444 568999999999999988765 11 266655431 111122 234455554432
Q ss_pred -------cCCCccceEEeccccc----c----ccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 375 -------FFDNTMDLIHTTGFMD----G----WLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 375 -------f~d~sFDlVis~~~L~----h----~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|....-|+|+|..+.. | +...+.+..+|.-...+|||||.|+--.|-
T Consensus 104 ae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 104 AEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred HHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 4455889999976652 2 223333456677788999999998764443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.85 Score=45.91 Aligned_cols=80 Identities=13% Similarity=0.236 Sum_probs=47.6
Q ss_pred ccEEEccCCCC--ccCCCccceEEecccccc----------ccch---hhHHHHHHHHHhccCCCcEEEEEecccCCCCH
Q 012235 363 IPLYVTLNQRL--PFFDNTMDLIHTTGFMDG----------WLDM---LLLDFILFDWDRILRPGGLLWIDRFFCNKKDL 427 (467)
Q Consensus 363 i~~~~~d~~~L--pf~d~sFDlVis~~~L~h----------~~~~---~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~ 427 (467)
..++++|+..+ .+++++||+|+++-...- |... .-+...+.++.|+|||||.+++.. .....
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~---~~~~~ 85 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN---STENM 85 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc---Cchhh
Confidence 35677776553 356789999999654310 1000 113578999999999999999842 11122
Q ss_pred HHHHHHHHHcCce---eeEEEE
Q 012235 428 DDYMYMFLQFRYK---KHKWAI 446 (467)
Q Consensus 428 ~~~~~~i~~~Gf~---~l~W~~ 446 (467)
.+...+.+.||. .+-|..
T Consensus 86 -~~~~~~~~~~f~~~~~iiW~k 106 (284)
T PRK11524 86 -PFIDLYCRKLFTIKSRIVWSY 106 (284)
T ss_pred -hHHHHHHhcCcceEEEEEEEe
Confidence 234445555663 344553
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.06 E-value=1.1 Score=38.54 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=58.9
Q ss_pred CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCccceEEeccccccccchhhHH
Q 012235 327 GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTMDLIHTTGFMDGWLDMLLLD 399 (467)
Q Consensus 327 GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sFDlVis~~~L~h~~~~~~l~ 399 (467)
|.|..+..+++. |.+|++ ++.++..++.+++.|...++.....++ . ...+.+|+|+-.-.- .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~--~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---------~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIA--TDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---------G 69 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEE--EESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---------H
T ss_pred ChHHHHHHHHHHcCCEEEE--EECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc---------H
Confidence 457788888876 888888 556677788888777433333332221 1 223579999866553 3
Q ss_pred HHHHHHHhccCCCcEEEEEeccc
Q 012235 400 FILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 400 ~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..+.+...+|+|||.+++.....
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 68999999999999999976665
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=2.7 Score=42.87 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=57.4
Q ss_pred CCCCCceEEEECCC-ccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEc---cCCCCccCCCccceEEecc
Q 012235 314 KPGETRIGLDFGVG-TGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVT---LNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 314 ~~g~~r~VLDIGCG-tG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~---d~~~Lpf~d~sFDlVis~~ 387 (467)
.+++ +||=+|+| .|..+..+++. |. .|++ .+.++..++.+.+.|...++.. +...+....+.+|+|+-..
T Consensus 168 ~~g~--~VlV~G~G~vG~~aiqlak~~G~~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 168 LQGK--RVFVSGVGPIGCLIVAAVKTLGAAEIVC--ADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--EeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 3455 78878875 34566666655 76 5777 4556667777777664222221 1111111123589888654
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
.- ...+....+.|++||.+++...
T Consensus 244 G~---------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 GH---------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CC---------HHHHHHHHHHhhcCCEEEEEcc
Confidence 42 2467788899999999988654
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=89.03 E-value=3.5 Score=39.27 Aligned_cols=94 Identities=22% Similarity=0.195 Sum_probs=57.0
Q ss_pred CCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccceEEec
Q 012235 314 KPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDLIHTT 386 (467)
Q Consensus 314 ~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDlVis~ 386 (467)
.+++ +||..|+|. |..+..+++. |.+|+++ +.++...+.+...+...++....... ....+.+|+|+..
T Consensus 133 ~~~~--~vli~g~~~~G~~~~~~a~~~g~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 133 KPGD--TVLVLGAGGVGLLAAQLAKAAGARVIVT--DRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCeEEEE--cCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 5555 899999985 6666666654 8888884 44555556665554222221111111 1124579999865
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
..- ...+..+.+.|+++|.++....
T Consensus 209 ~~~---------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VGG---------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCC---------HHHHHHHHHhcccCCEEEEEcc
Confidence 432 1356777889999999887543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=88.82 E-value=0.33 Score=45.42 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=38.5
Q ss_pred CCCccceEEecccccccc--------chhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 376 FDNTMDLIHTTGFMDGWL--------DMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~--------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
..++||.+.|..+++|.. ++.+-...+.++.++|||||.|++..+...
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 467899999999998753 233335789999999999999999887765
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=88.67 E-value=1.5 Score=45.00 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=54.5
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCc-----c
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLP-----F 375 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lp-----f 375 (467)
.+.+...+++ .++|.=+|.|..+..+++. +..|+| +|..+.+++.+.++ +.+.+++++...+. .
T Consensus 13 l~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~g~vig--iD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 13 VEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGTGRLIG--IDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCCCEEEE--EcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 3445566666 8999999999999999986 367888 56667777766543 24778888766543 1
Q ss_pred CCCccceEEecccc
Q 012235 376 FDNTMDLIHTTGFM 389 (467)
Q Consensus 376 ~d~sFDlVis~~~L 389 (467)
..+++|.|+....+
T Consensus 89 ~~~~vDgIl~DLGv 102 (305)
T TIGR00006 89 LVTKIDGILVDLGV 102 (305)
T ss_pred CCCcccEEEEeccC
Confidence 23578998876443
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=88.11 E-value=0.72 Score=40.32 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=24.5
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTA 346 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvd 346 (467)
..-.|||||+|.+..-|.+.|+.-.|+|
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred CceEEccCCchHHHHHHHhCCCCccccc
Confidence 3579999999999999999999888854
|
; GO: 0008168 methyltransferase activity |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.99 E-value=2.3 Score=42.43 Aligned_cols=85 Identities=9% Similarity=0.004 Sum_probs=56.0
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHH---HHc------------CCccEEEcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMI---ALR------------GLIPLYVTL 369 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a---~~r------------g~i~~~~~d 369 (467)
..+.+..+++++..-+|||.=+|+|..+..++.+|..|+.+ +-++.....+ .++ ..+.++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~v--Er~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRML--ERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 34556677777654489999999999999999999999984 4444332222 111 125566676
Q ss_pred CCCC-ccCCCccceEEecccccc
Q 012235 370 NQRL-PFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 370 ~~~L-pf~d~sFDlVis~~~L~h 391 (467)
...+ .-...+||+|+..-.+.|
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 4433 222347999998877744
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=87.88 E-value=3.4 Score=42.23 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecC-CCHHHHHHHHHcCCccEEEccCCCC--ccCCCccceEEeccc
Q 012235 314 KPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALN-LGAPFNEMIALRGLIPLYVTLNQRL--PFFDNTMDLIHTTGF 388 (467)
Q Consensus 314 ~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiD-iS~~~l~~a~~rg~i~~~~~d~~~L--pf~d~sFDlVis~~~ 388 (467)
.+++ +||=+|+|. |.++..+++. |..|++++.. .++..++.+.+.|. ..+....+.+ ....+.+|+|+-...
T Consensus 171 ~~g~--~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga-~~v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 171 WNPR--RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGA-TYVNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC-EEecCCccchhhhhhcCCCCEEEECcC
Confidence 4555 788888764 5666666665 8888886542 35666666766654 2221111110 011246888886554
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
- ...+.+..++|++||.+++...
T Consensus 248 ~---------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 V---------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred C---------HHHHHHHHHHccCCcEEEEEec
Confidence 2 2467888999999999887544
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=87.39 E-value=5.7 Score=39.56 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=80.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc---cCCCccceEEeccc-----cc-
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP---FFDNTMDLIHTTGF-----MD- 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp---f~d~sFDlVis~~~-----L~- 390 (467)
+++|+=||-|.+...+.+.|.+++. .+|+.+.+.+....+.. ....+|+..+. ++. .+|+++.... ..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~-a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag 78 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVW-AVEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAG 78 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEE-EEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEE-EeecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEeccc
Confidence 6899999999999999999976553 46777777776665544 67777877765 333 5999997532 11
Q ss_pred ---cccchh-hHHHHHHHHHhccCCCcEEEEEecccCC----CCHHHHHHHHHHcCceeeEEEEccC-------CCCceE
Q 012235 391 ---GWLDML-LLDFILFDWDRILRPGGLLWIDRFFCNK----KDLDDYMYMFLQFRYKKHKWAISPK-------SKDEVY 455 (467)
Q Consensus 391 ---h~~~~~-~l~~~L~el~RvLKPGG~LiI~~~~~~~----~~~~~~~~~i~~~Gf~~l~W~~~~k-------~~devy 455 (467)
...+.. .+-..+.++.+.++|.-.++=-...... ...+.+.+.++.+||.. .|.+..- .+..+|
T Consensus 79 ~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v-~~~vlna~~yGvPQ~R~R~f 157 (335)
T PF00145_consen 79 KRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNV-QWRVLNAADYGVPQNRERVF 157 (335)
T ss_dssp THHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEE-EEEEEEGGGGTSSBE-EEEE
T ss_pred cccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccceee-hhccccHhhCCCCCceeeEE
Confidence 111221 1223445556667886543322222111 12457888889999864 4554332 455667
Q ss_pred EEEEee
Q 012235 456 LSALLE 461 (467)
Q Consensus 456 l~avlq 461 (467)
+.++..
T Consensus 158 ivg~r~ 163 (335)
T PF00145_consen 158 IVGIRK 163 (335)
T ss_dssp EEEEEG
T ss_pred EEEECC
Confidence 777553
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=86.99 E-value=9.4 Score=37.99 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=60.4
Q ss_pred ceEEEECCCcc-HHHHHHhhCCCEEEEEecCCCHHHHHHHH----HcCC-ccEEEccCCC-Ccc-CCCccceEEeccccc
Q 012235 319 RIGLDFGVGTG-TFAARMREQNVTIVSTALNLGAPFNEMIA----LRGL-IPLYVTLNQR-LPF-FDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG-~~a~~La~~g~~V~gvdiDiS~~~l~~a~----~rg~-i~~~~~d~~~-Lpf-~d~sFDlVis~~~L~ 390 (467)
++||=+|=.-- +++..+......|+. +|+.+..++.+. +.|. +..++.|... +|- .-++||++++.-.-
T Consensus 46 k~il~lGDDDLtSlA~al~~~~~~I~V--vDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy- 122 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALTGLPKRITV--VDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY- 122 (243)
T ss_dssp -EEEEES-TT-HHHHHHHHT--SEEEE--E-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S-
T ss_pred CEEEEEcCCcHHHHHHHhhCCCCeEEE--EEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC-
Confidence 38999996654 455555555678888 455566665543 3454 6677777543 331 24899999997654
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCH---HHHHHHHHHcCce
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDL---DDYMYMFLQFRYK 440 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~---~~~~~~i~~~Gf~ 440 (467)
..+++..++......||..|-..+..+....... ..+++.+.++|+.
T Consensus 123 ---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 123 ---TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp ---SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred ---CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 2345678899999999987744443444333223 2677788888884
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.43 E-value=1.5 Score=47.88 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=69.3
Q ss_pred ceEEEECCCccHHHHHHhh------CCCEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCCccCCCccceEEec
Q 012235 319 RIGLDFGVGTGTFAARMRE------QNVTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~------~g~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
..|+=+|+|-|-+..+..+ +.+.+++ ++-.+.++.....+ +.+.++..|+..++-+..+.|++++-
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklya--vEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE 446 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYA--VEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE 446 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEE--EecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH
Confidence 4678899999966554432 3455666 55555555544433 34889999999998556899999985
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..- .+.+.+...+.|..+.+.|||+|..+=..
T Consensus 447 LLG-SFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 447 LLG-SFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred hhc-cccCccCCHHHHHHHHhhcCCCceEccch
Confidence 543 55566555789999999999999866543
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.09 E-value=5.5 Score=40.02 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=55.2
Q ss_pred CCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEcc---CCCCccCCCccceEEeccc
Q 012235 315 PGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTL---NQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 315 ~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d---~~~Lpf~d~sFDlVis~~~ 388 (467)
+++ +||-.|+|. |..+..+++. |. .+++ .+.++...+.+.+.+.-.++... ...+....+.+|+|+....
T Consensus 165 ~~~--~VLI~g~g~vG~~~~~lak~~G~~~v~~--~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 165 AGK--RVLVTGAGPIGALVVAAARRAGAAEIVA--TDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC
Confidence 454 778888765 5666666654 77 6776 45556666655555432222111 1122222345899987544
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
. ...+.++.+.|+++|.++...
T Consensus 241 ~---------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 A---------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C---------HHHHHHHHHHHhcCCEEEEEe
Confidence 3 246788899999999988654
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.52 E-value=6.7 Score=40.38 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=86.2
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCccC---CCccceEEeccccccc--
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLPFF---DNTMDLIHTTGFMDGW-- 392 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lpf~---d~sFDlVis~~~L~h~-- 392 (467)
.+++|+=||-|.+..-+.+.|.++.. ..|+.+.+++.-..+.. ..+...|...+... ...+|+++....=..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~-a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~ 82 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVF-ANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSI 82 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEE-EEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhh
Confidence 37899999999999999998988765 36777777777766554 45555665544321 1178999975322111
Q ss_pred -------cch-hhHHHHHHHHHhccCCCcEEEEEecc---c-CCCCHHHHHHHHHHcCceeeEEEEccC-------CCCc
Q 012235 393 -------LDM-LLLDFILFDWDRILRPGGLLWIDRFF---C-NKKDLDDYMYMFLQFRYKKHKWAISPK-------SKDE 453 (467)
Q Consensus 393 -------~~~-~~l~~~L~el~RvLKPGG~LiI~~~~---~-~~~~~~~~~~~i~~~Gf~~l~W~~~~k-------~~de 453 (467)
.+. ..+-.-+.++...++| -.|++-.-- . .....+.+.+.+++.||. +.|.+..- .+..
T Consensus 83 aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~-~~~~ilna~dyGvPQ~ReR 160 (328)
T COG0270 83 AGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG-VEFNILNAADYGVPQSRER 160 (328)
T ss_pred cCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc-chHheeeHHhcCCCCCccE
Confidence 111 1122345666777788 444542211 1 233566899999999998 55544322 4556
Q ss_pred eEEEEEe
Q 012235 454 VYLSALL 460 (467)
Q Consensus 454 vyl~avl 460 (467)
+|+....
T Consensus 161 vfiig~~ 167 (328)
T COG0270 161 VFIVGFR 167 (328)
T ss_pred EEEEEec
Confidence 7777544
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=85.42 E-value=5.7 Score=39.68 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=57.9
Q ss_pred HHhcCCCCCCceEEEECCC-ccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCCC----ccCCCccc
Q 012235 309 DILAIKPGETRIGLDFGVG-TGTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQRL----PFFDNTMD 381 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L----pf~d~sFD 381 (467)
....+.+++ +||-+|+| .|..+..+++. |.. ++. .+.+....+.+.+.+...++....... ....+.+|
T Consensus 153 ~~~~~~~g~--~vlI~g~g~vg~~~~~la~~~G~~~v~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 153 DLLGIKPGD--SVLVFGAGPIGLLLAQLLKLNGASRVTV--AEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCc
Confidence 344555665 78888865 24555555554 766 665 445566666665555322222211111 11345689
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+....- ...+.++.+.|+++|.++....
T Consensus 229 ~v~~~~~~---------~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 229 VVIEATGV---------PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred EEEECCCC---------hHHHHHHHHHHhcCCEEEEEec
Confidence 99865322 2467888999999999887543
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=85.19 E-value=6.9 Score=40.09 Aligned_cols=96 Identities=11% Similarity=-0.051 Sum_probs=57.3
Q ss_pred cCCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||=.|+|. |..+..+++. |.. |++ ++.++...+.+.+.|.-.++........ .....+|+
T Consensus 173 ~~~~g~--~VlV~G~g~vG~~a~~~ak~~G~~~Vi~--~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 173 GVKRGD--SVAVIGCGGVGDAAIAGAALAGASKIIA--VDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 455666 788888753 4555666655 774 777 5556666777766664222221111110 12235898
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+-...- ...+.+..+.|++||.+++...
T Consensus 249 vid~~g~---------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDAVGR---------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEECCCC---------HHHHHHHHHHhccCCEEEEECC
Confidence 8854332 2467778889999999987544
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=85.13 E-value=6.4 Score=39.58 Aligned_cols=97 Identities=11% Similarity=0.069 Sum_probs=58.9
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC----Cc--cCCCccc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR----LP--FFDNTMD 381 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~----Lp--f~d~sFD 381 (467)
...+.+++ +||-.|+|. |..+..+++. |.+|+++ ..++...+.+.+.+...++...... +. .....+|
T Consensus 154 ~~~l~~g~--~vLI~g~g~vG~~a~~lA~~~g~~v~~~--~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 154 RAGVTAGD--TVLVVGAGPIGLGVIQVAKARGARVIVV--DIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCeEEEE--CCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 34556666 788888763 6676777766 8888874 3445556666555532222211111 10 1234589
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+....- ...+.++.+.|+++|.++...
T Consensus 230 ~vld~~g~---------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 230 VVIDATGN---------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EEEECCCC---------HHHHHHHHHHHhcCCEEEEEc
Confidence 99875422 246788899999999988643
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3 | Back alignment and domain information |
|---|
Probab=85.12 E-value=1.7 Score=40.21 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCcCccCccccccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012235 20 LVLGGLVIVVSISSLFRFYAAGFFMHNEDICLHFYSVKDVYDGFDIRALSDRVGEVLNRMESLQDKLEKTVQQLEK 95 (467)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (467)
.||=+=.|-|-+|.||.|+..... +++.......+.. .+..-+ ..--.||++||++|++|.+-|||
T Consensus 84 ~imPlYtiGI~~f~lY~l~Ki~~~-k~~~~~~~~~~~~---~~~~~~------~~~~~eL~qLq~rL~qTE~~m~k 149 (152)
T PF15361_consen 84 QIMPLYTIGIVLFILYTLFKIKKK-KDSPRERKSSTER---KGNTKR------KITDYELAQLQERLAQTERAMEK 149 (152)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhc-CCccccccccccc---cccccc------cchHHHHHHHHHHHHHHHHHHHH
Confidence 344446666778888998876522 2221111111111 111112 24457999999999999999995
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=84.46 E-value=8.7 Score=38.19 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=58.8
Q ss_pred HHhcCCCCCCceEEEEC--CCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCcc
Q 012235 309 DILAIKPGETRIGLDFG--VGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIG--CGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sF 380 (467)
....+.+++ +||=.| .|.|..+..+++. |.+|+++ +.++...+.+.+.|.-.++......+. ...+.+
T Consensus 137 ~~~~~~~g~--~vlI~ga~g~vG~~aiqlA~~~G~~vi~~--~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 137 EICKPKAGE--TVVVNGAAGAVGSLVGQIAKIKGCKVIGC--AGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred HhcCCCCCC--EEEEecCccHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCc
Confidence 344566666 777776 4566777777765 8888774 445556666666554223322211111 123568
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+|+....- ..+.+..+.|+++|.++..
T Consensus 213 d~vld~~g~----------~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 213 DCYFDNVGG----------EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEEECCCH----------HHHHHHHHhhccCCEEEEE
Confidence 988854321 4578889999999998864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.33 E-value=2.7 Score=43.91 Aligned_cols=112 Identities=20% Similarity=0.151 Sum_probs=73.9
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHH--------H-HHHHHcC----CccEEEccCCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPF--------N-EMIALRG----LIPLYVTLNQRL 373 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~--------l-~~a~~rg----~i~~~~~d~~~L 373 (467)
.......++|+ .|.|==.|||.+....+.-|.-|+|.|+|.-..- + ...++-| .+.++.+|...-
T Consensus 200 ~AN~Amv~pGd--ivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 200 MANQAMVKPGD--IVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNP 277 (421)
T ss_pred HhhhhccCCCC--EEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCc
Confidence 33445577888 8999999999999999989999999888853210 0 1111222 256777887766
Q ss_pred ccC-CCccceEEecccc------------------------cccc------chhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 374 PFF-DNTMDLIHTTGFM------------------------DGWL------DMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 374 pf~-d~sFDlVis~~~L------------------------~h~~------~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|.. .-.||.|+|.-.. .|++ -...+...+.-..|+|.-||.+++--+
T Consensus 278 ~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 278 PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 643 4579999986221 1221 112233566778899999999987443
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=83.83 E-value=10 Score=37.89 Aligned_cols=96 Identities=18% Similarity=0.082 Sum_probs=57.3
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-cCCCccceEEecc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-FFDNTMDLIHTTG 387 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-f~d~sFDlVis~~ 387 (467)
..+.+++ +||-.|+| .|..+..+++. |..|+.+ +.+....+.+.+.+...++........ ...+.+|+|+...
T Consensus 158 ~~~~~~~--~vlI~g~g~iG~~~~~~a~~~G~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~ 233 (330)
T cd08245 158 AGPRPGE--RVAVLGIGGLGHLAVQYARAMGFETVAI--TRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV 233 (330)
T ss_pred hCCCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC
Confidence 3455555 78888886 56666666655 8888874 445556666655553222221111110 0124689888643
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.- ...+.++.+.|+++|.++...
T Consensus 234 ~~---------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 VS---------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred Cc---------HHHHHHHHHhcccCCEEEEEC
Confidence 32 246788899999999988754
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=83.77 E-value=8.7 Score=39.80 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=64.3
Q ss_pred eEEEECCCc-cHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-C-----ccC-CCccceEEecccc
Q 012235 320 IGLDFGVGT-GTFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-L-----PFF-DNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGt-G~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-L-----pf~-d~sFDlVis~~~L 389 (467)
+|+=+|||+ |.++..+++. | ..|+. +|.++.-++.|++.+....+...... . ... ...+|+|+=....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv--~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIV--VDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEE--eCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 899999997 6676666665 4 45666 57888888888885543333332221 1 111 2369999855543
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
...+.++.+++||||.+++.......
T Consensus 249 ---------~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 249 ---------PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ---------HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 35899999999999999997766544
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=83.33 E-value=11 Score=38.25 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=56.8
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccc
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
..+.+++ +||=.|+| .|..+..+++. |..|+++ +.++...+.+.+.|.-.++.. ... ..+.+|+++-...
T Consensus 161 ~~~~~g~--~VlV~G~g~iG~~a~~~a~~~G~~vi~~--~~~~~~~~~a~~~Ga~~vi~~--~~~--~~~~~d~~i~~~~ 232 (329)
T TIGR02822 161 ASLPPGG--RLGLYGFGGSAHLTAQVALAQGATVHVM--TRGAAARRLALALGAASAGGA--YDT--PPEPLDAAILFAP 232 (329)
T ss_pred cCCCCCC--EEEEEcCCHHHHHHHHHHHHCCCeEEEE--eCChHHHHHHHHhCCceeccc--ccc--CcccceEEEECCC
Confidence 4566666 88888865 34455556554 8888774 444555777777664222211 111 1245787654332
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
. ...+....+.|++||.+++...
T Consensus 233 ~---------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 A---------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred c---------HHHHHHHHHhhCCCcEEEEEec
Confidence 2 2468888899999999988654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=82.93 E-value=14 Score=37.08 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=59.4
Q ss_pred HHhcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCC-CC-----ccCCCc
Q 012235 309 DILAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ-RL-----PFFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~-~L-----pf~d~s 379 (467)
....+.+++ +||=.|+ |.|..+..+++. |.+|++ .+.++...+.+.+.|.-.++..... .+ ....+.
T Consensus 132 ~~~~~~~g~--~VLI~ga~g~vG~~aiqlAk~~G~~Vi~--~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 132 EICGVKGGE--TVMVNAAAGAVGSVVGQIAKLKGCKVVG--AAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred HHhCCCCCC--EEEEeCCccHHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCC
Confidence 444566776 7887774 567777777766 888877 4445556666666553222221111 11 012346
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+-...- ..+.+..++|++||.++...
T Consensus 208 vdvv~d~~G~----------~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 208 YDCYFDNVGG----------EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred eEEEEECCCH----------HHHHHHHHHhCcCcEEEEec
Confidence 8988854322 24578889999999998753
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=82.45 E-value=8 Score=39.87 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=57.5
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccce
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDl 382 (467)
..+.+++ +||=.|+|. |..+..+++. |. .|++ ++.++..++.+.+.|...++......+. ..++.+|+
T Consensus 187 ~~i~~g~--~VlV~G~G~vG~~a~~lak~~G~~~Vi~--~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 187 AGVRPGQ--SVAVVGLGGVGLSALLGAVAAGASQVVA--VDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEE--EcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 3456666 677788753 4555666654 77 5777 5566666777766554222222111110 11236898
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+-...- ...+....+.|++||.+++...
T Consensus 263 vid~~G~---------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 263 AFEMAGS---------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EEECCCC---------hHHHHHHHHHHhcCCEEEEEcc
Confidence 8854332 2467778899999999887543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.43 E-value=4.6 Score=39.95 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHH-------HHHHc--------CCccEEEcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNE-------MIALR--------GLIPLYVTL 369 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~-------~a~~r--------g~i~~~~~d 369 (467)
..+.+..+++++...+|||.=+|-|.-+..++..|.+|++ ++-++.+.. .+... ..+.++++|
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~--lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTG--LERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEE--EE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEE--EECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 3455667777664448999999999999999888999999 555543322 22211 126788887
Q ss_pred CCC-CccCCCccceEEecccccc
Q 012235 370 NQR-LPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 370 ~~~-Lpf~d~sFDlVis~~~L~h 391 (467)
... ++.++++||+|+..-.+.+
T Consensus 141 ~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCCHCCCHSS--SEEEE--S---
T ss_pred HHHHHhhcCCCCCEEEECCCCCC
Confidence 554 4566899999999776643
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF14314 Methyltrans_Mon: Virus-capping methyltransferase | Back alignment and domain information |
|---|
Probab=81.60 E-value=12 Score=42.44 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=54.0
Q ss_pred CCccceEEeccccccccchhhHHHHH-HHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHHcCceeeEEEEccC---CC
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFIL-FDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQFRYKKHKWAISPK---SK 451 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L-~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k---~~ 451 (467)
.-++|+|++..=.........++..+ ..+.++|.++|.+++-+|...=-..+ .....+.+. |..+.+....- ..
T Consensus 413 ~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~-F~~V~l~qT~~SSs~T 491 (675)
T PF14314_consen 413 NLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRY-FKSVELVQTQFSSSFT 491 (675)
T ss_pred CCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhh-cCceEEEECCCCCCCc
Confidence 34799999865432222122233344 45668889999999987765322222 566777777 89998887766 34
Q ss_pred CceEEEEEeecCC
Q 012235 452 DEVYLSALLEKPP 464 (467)
Q Consensus 452 devyl~avlqKP~ 464 (467)
.|||+. ++|+.
T Consensus 492 SEVYlv--~~~~~ 502 (675)
T PF14314_consen 492 SEVYLV--FQKLK 502 (675)
T ss_pred eEEEEE--Eeccc
Confidence 689984 56653
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.20 E-value=12 Score=37.81 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=55.8
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCCccEEEccCCC-------C--ccCC
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGLIPLYVTLNQR-------L--PFFD 377 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-------L--pf~d 377 (467)
...+.+++ +||-.|+|. |..+..+++. |.. |+. ...+....+.+.+.+.-.++...... + ....
T Consensus 157 ~~~~~~g~--~vlI~g~g~vG~~a~~lak~~G~~~v~~--~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 157 RAGVRPGD--TVLVFGAGPIGLLTAAVAKAFGATKVVV--TDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCC
Confidence 44556665 666677654 5666666665 776 666 34444445555444432222221111 1 1223
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.+|+|+....- ...+.+..+.|+++|.++...
T Consensus 233 ~~~d~vld~~g~---------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 233 KGPDVVIECTGA---------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCEEEECCCC---------HHHHHHHHHHhhcCCEEEEEc
Confidence 559999865443 236788899999999988643
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=80.23 E-value=16 Score=30.79 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=60.6
Q ss_pred CCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc----CCCccceEEeccccccccchhh
Q 012235 326 VGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF----FDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 326 CGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf----~d~sFDlVis~~~L~h~~~~~~ 397 (467)
||.|.++..+++. +..++. +|..+...+.+...+ +.++.+|..+... .-...|.|++...- + .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvv--id~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~-----d-~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVV--IDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTDD-----D-E 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEE--EESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESSS-----H-H
T ss_pred EcCCHHHHHHHHHHHhCCCEEEE--EECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccCC-----H-H
Confidence 4556666666543 558888 555667778887777 7788898765431 23567777765431 2 1
Q ss_pred HHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
.-..+....|-+-|...++... ......+.++.+|...
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~------~~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARV------NDPENAELLRQAGADH 112 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE------SSHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHHHCCCCeEEEEE------CCHHHHHHHHHCCcCE
Confidence 2345556667777888877622 2225566777777644
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 2e-10
Identities = 78/526 (14%), Positives = 149/526 (28%), Gaps = 158/526 (30%)
Query: 45 HNEDICLHFYSVKDVYDGFDIRALSDRVGEVLNRMESLQDKLEKTVQQLEKEKDALDKT- 103
+DI F D FD + + D +L++ E + + KDA+ T
Sbjct: 17 QYKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEE---------IDHIIMSKDAVSGTL 65
Query: 104 --ITRLE------YKNFLEVEVIRPLYS---AHIALRQIRLPKAEGIGNFTMEEEPLINT 152
L + F+E EV+R Y + I + R P + + + L N
Sbjct: 66 RLFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIK-TEQRQPSMMTR-MYIEQRDRLYND 122
Query: 153 FVTEEIRKYITPKKNRVGKVN--IYGAEKIHNTIGH-----------ACVLMKKELEEYM 199
+ KY + K+ + N + V + +++ M
Sbjct: 123 --NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 200 DYDI-----GSYCKDD------WNLAQKLMVNGC------DPLPRRRCLTRASK---VYQ 239
D+ I + + L ++ N + R +A +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 240 KPFPINESLWKLPDGRNVRWS-------NYQCR---------NFECLSSKNPKRGYS-KC 282
KP+ L L NV + N C+ + LS+
Sbjct: 241 KPYE--NCLLVL---LNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 283 TGCFEMDKEKP---KWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQN 339
+ D+ K K++ L ++L P R+ + A +R+
Sbjct: 295 SMTLTPDEVKSLLLKYL---DCRPQDLPREVLTTNP--RRLSI--------IAESIRDGL 341
Query: 340 VT--------------IVSTALNLGAP------FNEMIALRG--LIP--LYVTLNQRLPF 375
T I+ ++LN+ P F+ + IP L + +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 376 FD--NTMDLIHTTGFMDGW-------LDMLLLDF------------ILFDWDRILRPGGL 414
D ++ +H ++ + + L+ + D I +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT--- 458
Query: 415 LWIDRFFCNKKDLDDYMYMFLQFRYKK----HKWAISPKSKDEVYL 456
D LD Y Y + K + + V+L
Sbjct: 459 --FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM----VFL 498
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 6e-07
Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 13/147 (8%)
Query: 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL---RGLIPLYVTL 369
+K R+ LD G GTG ++ ++E+ +V + EM+ + +G+ +
Sbjct: 52 LKNPC-RV-LDLGGGTGKWSLFLQERGFEVVLVDPSK-----EMLEVAREKGVKNVVEAK 104
Query: 370 NQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDD 429
+ LPF + + G + +++ D + R+L P GLL L
Sbjct: 105 AEDLPFPSGAFEAVLALGDVLSYVE--NKDKAFSEIRRVLVPDGLLIAT-VDNFYTFLQQ 161
Query: 430 YMYMFLQFRYKKHKWAISPKSKDEVYL 456
+ + + + ++
Sbjct: 162 MIEKDAWDQITRFLKTQTTSVGTTLFS 188
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 29/144 (20%)
Query: 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL-------RGLIPL 365
++ + I LD G G+G + + + ++ +N +E I L GL
Sbjct: 28 LQEDD-EI-LDIGCGSGKISLELASKGYSVTGIDIN-----SEAIRLAETAARSPGLNQK 80
Query: 366 ------YVTLN-QRLPFFDNTMDLIHTTGFMDGWL----DMLLLDFILFDWDRILRPGGL 414
+ N L F D++ D L D I+ + R+L+PG
Sbjct: 81 TGGKAEFKVENASSLSFHDSSFDFA-VMQAF---LTSVPDPKERSRIIKEVFRVLKPGAY 136
Query: 415 LWIDRFFCNKKDLDDYMYMFLQFR 438
L++ F N F
Sbjct: 137 LYLVEFGQNWHLKLYRKRYLHDFP 160
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 29/198 (14%), Positives = 68/198 (34%), Gaps = 27/198 (13%)
Query: 288 MDKEKPKW----VAN-------RSVP----VDFLISDILAIKPGETRIGLDFGVGTGTFA 332
M + K V+ + +P + I ++ I LD G GTG +
Sbjct: 1 MSLSEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDI-LDLGAGTGLLS 59
Query: 333 ARMREQNVTIVSTALNLGAPFNEMIA-----LRGLIPL-YVTLNQRLPFFDNTMDLIHTT 386
A + E+ T +++ +M+ RG + + Y+ + F+ D++ +
Sbjct: 60 AFLMEKYPEATFTLVDMSE---KMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMV-VS 115
Query: 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAI 446
L+ + IL+ G+ + + + + +Y ++ +
Sbjct: 116 ALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENS-GL 174
Query: 447 SPKSKDEVYLSALLEKPP 464
+ + Y + L+K
Sbjct: 175 TEEEIAAGYERSKLDKDI 192
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 9e-06
Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 44/173 (25%)
Query: 302 PVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG 361
PVD + D+ + + DFG G A+ +R +L+
Sbjct: 54 PVDRIARDLRQRPA--SLVVADFGCGDCRLASSIRNPVHCFDLASLD------------- 98
Query: 362 LIPLYVTLN-QRLPFFDNTMDL-IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI-- 417
P + ++P D ++D+ + M + + DF L + +R+L+PGGLL +
Sbjct: 99 --PRVTVCDMAQVPLEDESVDVAVFCLSLM--GTN--IRDF-LEEANRVLKPGGLLKVAE 151
Query: 418 --DRFFCNK---------------KDLDDYMYMFLQFRYKKHKWAISPKSKDE 453
RF + KDL + + F+ K + PK++
Sbjct: 152 VSSRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQ-KTGPPLVGPKAQLS 203
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 20/161 (12%)
Query: 311 LAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL-RGLIPLYVTL 369
+ K + L+FGVGTG ++ T+ + EM + + +P ++
Sbjct: 41 VVNKSFG-NV-LEFGVGTGNLTNKLLLAGRTV--YGIEPSR---EMRMIAKEKLPKEFSI 93
Query: 370 NQ----RLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI-DRFFCNK 424
+ ++D I + + L + + + ++L GG + D F ++
Sbjct: 94 TEGDFLSFE-VPTSIDTI-VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQ 151
Query: 425 KDLDDYMYMFLQFRYKKHKWAISPK---SKDEVYLSALLEK 462
D + Q + + + + + + E
Sbjct: 152 DAYDKTVEAAKQRGFHQLANDLQTEYYTRIPV--MQTIFEN 190
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL---RGLIPL 365
++L + G D G GTG ++ + Q + + + ++ M +
Sbjct: 28 NLLNLPKGSV--IADIGAGTGGYSVALANQGLFVYAVEPSIV-----MRQQAVVHPQVEW 80
Query: 366 YVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417
+ + L D ++D + + + + L+ + RI+R G ++ +
Sbjct: 81 FTGYAENLALPDKSVDGVISILAIHHFSH---LEKSFQEMQRIIRDGTIVLL 129
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 32/118 (27%)
Query: 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNE-MIAL---RGLIPLYV 367
+ PGE+ L+ G GTG + R+ G +E M+A+ R +V
Sbjct: 33 LLPPGES--LLEVGAGTGYWLRRLPYPQKV--------GVEPSEAMLAVGRRRAPEATWV 82
Query: 368 TLN-QRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWD-------RILRPGGLLWI 417
+ LPF + D++ +++ D + R+LRPGG L +
Sbjct: 83 RAWGEALPFPGESFDVV-LLFTTLEFVE---------DVERVLLEARRVLRPGGALVV 130
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 6e-05
Identities = 21/117 (17%), Positives = 31/117 (26%), Gaps = 13/117 (11%)
Query: 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL-RGLI 363
LI G I LD G GTG + + I L ++ L R
Sbjct: 32 VLIEPWATGVDG--VI-LDVGSGTGRWTGHLASLGHQI--EGLEPAT---RLVELARQTH 83
Query: 364 P---LYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417
P + L + + + L L + GG L +
Sbjct: 84 PSVTFHHGTITDLSDSPKRWAGL-LAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 306 LISDILAIKPGETRIGLDFGVGTGTFAARM-REQNVTIVSTALNLGAPF----NEMIALR 360
+S I + +I D G GTG + I T ++L F NE
Sbjct: 37 AVSFINELTDDA-KI-ADIGCGTGGQTLFLADYVKGQI--TGIDLFPDFIEIFNENAVKA 92
Query: 361 GLIPLYVTLN---QRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLL 415
+ LPF + +DLI +G + + + + +W + L+ GG +
Sbjct: 93 NCADRVKGITGSMDNLPFQNEELDLIW----SEGAIYNIGFERGMNEWSKYLKKGGFI 146
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 7e-05
Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 20/120 (16%)
Query: 306 LISDILAIKPGETRIGLDFGVGTGT---FAARMREQNVTIVSTALNLGAPF----NEMIA 358
+S I + I D G GTG A VT L+ + F N
Sbjct: 37 ALSFIDNLTEKS-LI-ADIGCGTGGQTMVLAGHVTGQVT----GLDFLSGFIDIFNRNAR 90
Query: 359 LRGL---IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLL 415
GL + V LPF + +DLI +G + + + L +W + L+ GG L
Sbjct: 91 QSGLQNRVTGIVGSMDDLPFRNEELDLIW----SEGAIYNIGFERGLNEWRKYLKKGGYL 146
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 7e-05
Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 23/156 (14%)
Query: 310 ILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL---RGLIPLY 366
+ + P G++ GVGTG FA ++ + + M + RG + +
Sbjct: 42 VKCLLPEGR--GVEIGVGTGRFAVPLKIK------IGVEPSE---RMAEIARKRG-VFVL 89
Query: 367 VTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKD 426
+ LP D + D + D + L + RIL+ GG L +
Sbjct: 90 KGTAENLPLKDESFDFALMVTTICFVDD---PERALKEAYRILKKGGYLIVGIVDRESFL 146
Query: 427 LDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEK 462
+Y + + K+ S + L L+ K
Sbjct: 147 GREYEKNKEKSVFYKNARFFSTEE-----LMDLMRK 177
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 7e-05
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA-LRGLIPLYV 367
+ +D+G G G + + E + +N + ++ +
Sbjct: 11 PNIFEGKKGV--IVDYGCGNGFYCKYLLEFATKLYCIDIN-----VIALKEVKEKFDSVI 63
Query: 368 TLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417
TL+ DN++D I F + + DM ++ + RIL+ G + I
Sbjct: 64 TLSDPKEIPDNSVDFIL---FANSFHDMDDKQHVISEVKRILKDDGRVII 110
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 31/169 (18%), Positives = 53/169 (31%), Gaps = 39/169 (23%)
Query: 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA-----LR 360
+ S + L+ GVGTG A + + AL+ A M+ +
Sbjct: 30 MASAVHPKGEEP-VF-LELGVGTGRIALPLIARGYRY--IALDADA---AMLEVFRQKIA 82
Query: 361 GLIPLYVTLNQ----RLPFFDNTMDLIHTT-GFMDGWLDMLLLDFILFDWD-------RI 408
G+ V + Q +P D ++ + + + DW R+
Sbjct: 83 GV-DRKVQVVQADARAIPLPDESVHGVIVVHLWH--LVP---------DWPKVLAEAIRV 130
Query: 409 LRPGGLL---WIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEV 454
L+PGG L W + L + F + + K EV
Sbjct: 131 LKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEV 179
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 23/130 (17%), Positives = 38/130 (29%), Gaps = 18/130 (13%)
Query: 295 WVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFN 354
+V + + A + L+ GTG + + + TAL+ A
Sbjct: 26 FVPYMDSAAPAALERLRAGNIRG-DV-LELASGTGYWTRHLSGLADRV--TALDGSA--- 78
Query: 355 EMIAL---RGLIPLYVTLNQ----RLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDR 407
EMIA GL V Q D D + + +
Sbjct: 79 EMIAEAGRHGLDN--VEFRQQDLFDWT-PDRQWDAV-FFAHWLAHVPDDRFEAFWESVRS 134
Query: 408 ILRPGGLLWI 417
+ PGG++
Sbjct: 135 AVAPGGVVEF 144
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 5e-04
Identities = 18/110 (16%), Positives = 27/110 (24%), Gaps = 22/110 (20%)
Query: 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL-----RGLIPLY 366
+ P R+ L+ G G G AAR Q A + E++ L
Sbjct: 45 LLTPQT-RV-LEAGCGHGPDAARFGPQAARW--AAYDFSP---ELLKLARANAPHADVYE 97
Query: 367 VTLNQRLPFFDN-TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLL 415
LP LI + + + P
Sbjct: 98 WNGKGELPAGLGAPFGLIVSRRGPTSVIL---------RLPELAAPDAHF 138
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 7e-04
Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 12/114 (10%)
Query: 310 ILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL-RGLIPLYVT 368
I A+ P +I LD G G G + +Q + +L +I + P
Sbjct: 40 IDAMAPRGAKI-LDAGCGQGRIGGYLSKQGHDV--LGTDLDP---ILIDYAKQDFP-EAR 92
Query: 369 LNQ----RLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418
+ DLI + G + G+L + L + R L G I
Sbjct: 93 WVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIG 146
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 7e-04
Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 21/151 (13%)
Query: 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVS-TALNLGAPFNEMIAL-RGLI 363
I GE ++ +D G G GT +M ++ +L A MI +
Sbjct: 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSA---TMIKTAEVIK 81
Query: 364 PLYVTLNQRLPFF---DNTMDLIHTTGFMDGWLDMLLLD--FILFDWD-------RILRP 411
+ + F + + +DM+ FD++ LR
Sbjct: 82 EGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRK 141
Query: 412 GGLL----WIDRFFCNKKDLDDYMYMFLQFR 438
G + + D F + + DD M +
Sbjct: 142 DGTIAIWGYADPIFPDYPEFDDLMIEVPYGK 172
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 467 | |||
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.68 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.68 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.67 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.67 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.67 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.64 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.64 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.64 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.64 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.63 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.63 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.63 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.63 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.62 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.61 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.61 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.61 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.61 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.6 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.6 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.6 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.6 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.59 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.59 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.59 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.59 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.58 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.58 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.57 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.57 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.57 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.57 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.57 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.57 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.57 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.56 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.56 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.55 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.55 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.55 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.55 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.54 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.54 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.53 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.53 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.53 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.52 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.52 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.52 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.52 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.51 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.51 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.51 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.51 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.5 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.5 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.5 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.5 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.5 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.5 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.48 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.48 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.47 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.46 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.45 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.45 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.44 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.44 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.44 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.44 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.42 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.42 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.42 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.42 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.4 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.39 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.39 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.39 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.39 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.39 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.38 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.38 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.38 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.37 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.37 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.37 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.37 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.36 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.36 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.36 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.36 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.35 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.34 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.34 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.33 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.33 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.33 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.33 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.33 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.32 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.31 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.31 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.31 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.31 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.3 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.3 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.3 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.3 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.3 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.3 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.29 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.29 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.29 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.28 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.27 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.27 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.27 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.27 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.26 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.26 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.25 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.25 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.25 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.25 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.25 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.24 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.24 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.23 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.23 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.23 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.22 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.22 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.22 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.22 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.22 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.21 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.21 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.2 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.2 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.2 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.19 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.19 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.19 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.18 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.18 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.17 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.17 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.17 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.16 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.16 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.15 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.15 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.15 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.15 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.14 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.13 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.13 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.12 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.12 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.12 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.11 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.11 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.11 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.1 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.1 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.1 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.1 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.09 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.09 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.09 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.09 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.09 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.08 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.08 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.07 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.07 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.06 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.06 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.05 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.05 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.04 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.04 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.03 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.03 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.02 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.02 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.02 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.01 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.01 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.01 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.01 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.0 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.99 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.98 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.98 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.98 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.98 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.97 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.97 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.97 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.96 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.96 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.96 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.95 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.95 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.94 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.94 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.94 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.94 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.93 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.93 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.93 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.92 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.91 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.91 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.91 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.9 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.9 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.9 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.86 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.86 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.86 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.86 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.86 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.85 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.84 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.84 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.83 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.82 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.8 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.8 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.76 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.73 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.72 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.7 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.69 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.69 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.67 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.67 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.66 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.66 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.65 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.64 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.64 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.64 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.63 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.61 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.58 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.58 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.46 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.43 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.37 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.34 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.34 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.33 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.32 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.27 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.27 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.27 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.25 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.19 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.18 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.17 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.14 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.1 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.05 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.03 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.98 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.97 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.93 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.93 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.9 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.9 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.87 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.86 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.79 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.79 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.75 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.69 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.65 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.61 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.58 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.53 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.51 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.5 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.42 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.4 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.32 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.25 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.25 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.01 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.77 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.74 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.95 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.67 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.37 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.18 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.01 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 94.27 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.23 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 94.13 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.09 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.08 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.06 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.03 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.98 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.96 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 93.72 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.77 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.72 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 92.66 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 92.61 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 92.56 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.54 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.52 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.51 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 92.35 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 92.06 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.05 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 91.97 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 91.89 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 91.89 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 91.88 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 91.81 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 91.8 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.6 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.27 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.08 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.98 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 90.85 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 90.73 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 90.69 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 90.62 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 90.52 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.42 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.37 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 90.35 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 90.01 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 89.71 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 89.65 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.33 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 89.12 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 89.11 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 89.01 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 88.94 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.93 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 88.89 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 88.34 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 88.02 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 87.83 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 87.72 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 87.69 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 87.63 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 87.61 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 87.46 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 87.23 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 87.14 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 86.81 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 86.72 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 86.7 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 86.35 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.14 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 85.86 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 85.57 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 85.25 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 84.97 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 84.8 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 84.21 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 83.82 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 83.48 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 83.06 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 82.98 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 82.7 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 82.29 |
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=148.91 Aligned_cols=132 Identities=11% Similarity=-0.037 Sum_probs=102.5
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc------------------CCccEEEccCCC
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR------------------GLIPLYVTLNQR 372 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r------------------g~i~~~~~d~~~ 372 (467)
+.+.++. +|||+|||+|..+..|+++|.+|+| +|+|+.|++.++++ ..+.++++|+..
T Consensus 18 l~~~~~~--~vLD~GCG~G~~~~~la~~g~~V~g--vD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 93 (203)
T 1pjz_A 18 LNVVPGA--RVLVPLCGKSQDMSWLSGQGYHVVG--AELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 93 (203)
T ss_dssp HCCCTTC--EEEETTTCCSHHHHHHHHHCCEEEE--EEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred cccCCCC--EEEEeCCCCcHhHHHHHHCCCeEEE--EeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence 3445555 8999999999999999999999999 88899999988765 247899999999
Q ss_pred CccCC-CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC---------CCHHHHHHHHHHcCceee
Q 012235 373 LPFFD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK---------KDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 373 Lpf~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~---------~~~~~~~~~i~~~Gf~~l 442 (467)
+++.+ ++||+|++..+++|+. ......++.++.|+|||||++++....... -..+++.+++.. ||+..
T Consensus 94 l~~~~~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~ 171 (203)
T 1pjz_A 94 LTARDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVT 171 (203)
T ss_dssp STHHHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEE
T ss_pred CCcccCCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEE
Confidence 99876 8999999999995554 334567999999999999985544333211 134577777777 88877
Q ss_pred EEEEcc
Q 012235 443 KWAISP 448 (467)
Q Consensus 443 ~W~~~~ 448 (467)
.+....
T Consensus 172 ~~~~~~ 177 (203)
T 1pjz_A 172 KVGGQD 177 (203)
T ss_dssp EEEESS
T ss_pred Eecccc
Confidence 666544
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-16 Score=143.74 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=120.9
Q ss_pred HHHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceE
Q 012235 305 FLISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 305 ~~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
..+..++. +.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++..+.+..+++..++ .+++||+|
T Consensus 32 ~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v 106 (211)
T 3e23_A 32 ATLTKFLGELPAGA--KILELGCGAGYQAEAMLAAGFDVDA--TDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAV 106 (211)
T ss_dssp HHHHHHHTTSCTTC--EEEESSCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEE
T ss_pred HHHHHHHHhcCCCC--cEEEECCCCCHHHHHHHHcCCeEEE--ECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEE
Confidence 34455554 44555 8999999999999999999999998 7788899998887755788899999888 78999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC------------CCHHHHHHHHHHcC-ceeeEEEEccC-
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK------------KDLDDYMYMFLQFR-YKKHKWAISPK- 449 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------~~~~~~~~~i~~~G-f~~l~W~~~~k- 449 (467)
+++.+++|+. ......++.++.|+|||||++++....... -+.+.+.+++++.| |+.+.......
T Consensus 107 ~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~ 185 (211)
T 3e23_A 107 WAHACLLHVP-RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGK 185 (211)
T ss_dssp EECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEE
T ss_pred EecCchhhcC-HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCC
Confidence 9999996665 334578999999999999999998654432 14668999999999 99887764433
Q ss_pred ---CCCceEEEEEeecCC
Q 012235 450 ---SKDEVYLSALLEKPP 464 (467)
Q Consensus 450 ---~~devyl~avlqKP~ 464 (467)
...+.|+..+..||.
T Consensus 186 ~~~~~~~~wl~~~~~~~~ 203 (211)
T 3e23_A 186 GFDQELAQFLHVSVRKPE 203 (211)
T ss_dssp CTTSCEEEEEEEEEECCC
T ss_pred CCCCCCceEEEEEEecCc
Confidence 223457777776664
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=141.24 Aligned_cols=151 Identities=15% Similarity=0.050 Sum_probs=118.9
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEE
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
.+..++... +. +|||+|||+|.++..+++.+..+++ +|+++.+++.++++. .+.++++|+..+++++++||+|+
T Consensus 33 ~l~~~~~~~-~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 107 (203)
T 3h2b_A 33 LIEPWATGV-DG--VILDVGSGTGRWTGHLASLGHQIEG--LEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLL 107 (203)
T ss_dssp HHHHHHHHC-CS--CEEEETCTTCHHHHHHHHTTCCEEE--ECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEE
T ss_pred HHHHHhccC-CC--eEEEecCCCCHHHHHHHhcCCeEEE--EeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEE
Confidence 344444433 33 7999999999999999999999998 788899999998864 48899999999999899999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------CCHHHHHHHHHHcCceeeEEEEccCCC
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------KDLDDYMYMFLQFRYKKHKWAISPKSK 451 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------~~~~~~~~~i~~~Gf~~l~W~~~~k~~ 451 (467)
+..+++|+.. .....++.++.++|||||.+++..+.... ...+.+.+++++.||+.+....... .
T Consensus 108 ~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~-~ 185 (203)
T 3h2b_A 108 AWYSLIHMGP-GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR-F 185 (203)
T ss_dssp EESSSTTCCT-TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT-S
T ss_pred ehhhHhcCCH-HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC-C
Confidence 9999977652 23579999999999999999998765432 2456899999999999998876654 3
Q ss_pred CceEEEEEeecC
Q 012235 452 DEVYLSALLEKP 463 (467)
Q Consensus 452 devyl~avlqKP 463 (467)
...++...-.+|
T Consensus 186 p~~~l~~~~~~~ 197 (203)
T 3h2b_A 186 PHAYLTAEASLE 197 (203)
T ss_dssp SEEEEEEEECC-
T ss_pred cchhhhhhhhhh
Confidence 444554433333
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-16 Score=148.33 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=107.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+...++. +|||+|||+|.++..+++++..|++ +|+++.|++.++++ + .+.++++|+..+|+++++|
T Consensus 29 l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~f 104 (260)
T 1vl5_A 29 LMQIAALKGNE--EVLDVATGGGHVANAFAPFVKKVVA--FDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 104 (260)
T ss_dssp HHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHhCCCCCC--EEEEEeCCCCHHHHHHHHhCCEEEE--EeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCE
Confidence 44555666665 8999999999999999999888888 77889998887654 2 3789999999999999999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC----------------------CCHHHHHHHHHHcC
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----------------------KDLDDYMYMFLQFR 438 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----------------------~~~~~~~~~i~~~G 438 (467)
|+|+++.+++|+.+. ..++.++.|+|||||.|++.++.... ...+.+.+++++.|
T Consensus 105 D~V~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 181 (260)
T 1vl5_A 105 HIVTCRIAAHHFPNP---ASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAG 181 (260)
T ss_dssp EEEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHT
T ss_pred EEEEEhhhhHhcCCH---HHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCC
Confidence 999999999777655 68999999999999999997654322 12347888899999
Q ss_pred ceeeEEEE
Q 012235 439 YKKHKWAI 446 (467)
Q Consensus 439 f~~l~W~~ 446 (467)
|..+.+..
T Consensus 182 f~~~~~~~ 189 (260)
T 1vl5_A 182 FELEELHC 189 (260)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEE
Confidence 98776654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=156.16 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=90.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhHH
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLD 399 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~ 399 (467)
+|||||||+|.++..|++++.+|+| +|+|+.|++.+.+...+.+++++++.+|+++++||+|++..++ ||.+. +
T Consensus 42 ~vLDvGcGtG~~~~~l~~~~~~v~g--vD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~~~---~ 115 (257)
T 4hg2_A 42 DALDCGCGSGQASLGLAEFFERVHA--VDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWFDL---D 115 (257)
T ss_dssp EEEEESCTTTTTHHHHHTTCSEEEE--EESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCC-TTCCH---H
T ss_pred CEEEEcCCCCHHHHHHHHhCCEEEE--EeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeeh-hHhhH---H
Confidence 8999999999999999999999998 7788999988877767999999999999999999999999999 78766 5
Q ss_pred HHHHHHHhccCCCcEEEEEecccCCCC
Q 012235 400 FILFDWDRILRPGGLLWIDRFFCNKKD 426 (467)
Q Consensus 400 ~~L~el~RvLKPGG~LiI~~~~~~~~~ 426 (467)
.++.++.|+|||||.|++..+.....+
T Consensus 116 ~~~~e~~rvLkpgG~l~~~~~~~~~~~ 142 (257)
T 4hg2_A 116 RFWAELRRVARPGAVFAAVTYGLTRVD 142 (257)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECCCBCC
T ss_pred HHHHHHHHHcCCCCEEEEEECCCCCCC
Confidence 799999999999999999877655443
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=144.37 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=105.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~ 378 (467)
+...+.+.++. +|||||||+|.++..+++. +.+|++ +|+++.+++.++++ + .+.++++|+..+++ ++
T Consensus 28 l~~~~~~~~~~--~VLDiGcG~G~~~~~la~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 102 (256)
T 1nkv_A 28 LGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTG--IDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NE 102 (256)
T ss_dssp HHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SS
T ss_pred HHHhcCCCCCC--EEEEECCCCCHHHHHHHHhcCCeEEE--EeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CC
Confidence 44455566666 8999999999999999987 778888 77888888887653 2 47899999999988 89
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------------CHHHHHHHHHHcCc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------------------DLDDYMYMFLQFRY 439 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------------------~~~~~~~~i~~~Gf 439 (467)
+||+|++..+++|+.+. ..++.++.|+|||||.+++.++..... ....+.+++++.||
T Consensus 103 ~fD~V~~~~~~~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 179 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF---AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGY 179 (256)
T ss_dssp CEEEEEEESCGGGTSSS---HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTB
T ss_pred CCCEEEECCChHhcCCH---HHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCC
Confidence 99999999999777655 689999999999999999987543221 23578899999999
Q ss_pred eeeEEE
Q 012235 440 KKHKWA 445 (467)
Q Consensus 440 ~~l~W~ 445 (467)
..+...
T Consensus 180 ~~~~~~ 185 (256)
T 1nkv_A 180 DVVEMV 185 (256)
T ss_dssp CCCEEE
T ss_pred eeEEEE
Confidence 877643
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=142.07 Aligned_cols=126 Identities=17% Similarity=0.040 Sum_probs=104.7
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCccCCCccceEEecccc
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
...++. +|||||||+|.++..+++.+.+|++ +|+++.+++.++++. .+.++++|+..+ +++++||+|++..++
T Consensus 39 ~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l 113 (250)
T 2p7i_A 39 PFFRPG--NLLELGSFKGDFTSRLQEHFNDITC--VEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVL 113 (250)
T ss_dssp GGCCSS--CEEEESCTTSHHHHHHTTTCSCEEE--EESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCG
T ss_pred hhcCCC--cEEEECCCCCHHHHHHHHhCCcEEE--EeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHH
Confidence 344454 7999999999999999999888988 778899999988764 578999998887 468899999999999
Q ss_pred ccccchhhHHHHHHHHH-hccCCCcEEEEEecccC------------------------------CCCHHHHHHHHHHcC
Q 012235 390 DGWLDMLLLDFILFDWD-RILRPGGLLWIDRFFCN------------------------------KKDLDDYMYMFLQFR 438 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~-RvLKPGG~LiI~~~~~~------------------------------~~~~~~~~~~i~~~G 438 (467)
+|+.+. ..++.++. |+|||||.+++.++... .-..+.+.+++++.|
T Consensus 114 ~~~~~~---~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 190 (250)
T 2p7i_A 114 EHIDDP---VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG 190 (250)
T ss_dssp GGCSSH---HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred HhhcCH---HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCC
Confidence 887665 68999999 99999999999875432 013458889999999
Q ss_pred ceeeEEE
Q 012235 439 YKKHKWA 445 (467)
Q Consensus 439 f~~l~W~ 445 (467)
|+.+.+.
T Consensus 191 f~~~~~~ 197 (250)
T 2p7i_A 191 LQVTYRS 197 (250)
T ss_dssp CEEEEEE
T ss_pred CeEEEEe
Confidence 9888764
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=146.67 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=86.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFD 381 (467)
++++. +|||+|||+|.++..|+++ |.+|+| +|+|+.|++.|+++ + .+.++++|+..+|+ +.||
T Consensus 68 ~~~~~--~vLDlGcGtG~~~~~la~~~~~~~~~v~g--vD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d 141 (261)
T 4gek_A 68 VQPGT--QVYDLGCSLGAATLSVRRNIHHDNCKIIA--IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENAS 141 (261)
T ss_dssp CCTTC--EEEEETCTTTHHHHHHHHTCCSSSCEEEE--EESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEE
T ss_pred CCCCC--EEEEEeCCCCHHHHHHHHhcCCCCCEEEE--EECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccc
Confidence 56666 8999999999999999875 568888 88899999998764 2 37899999999887 4599
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+|++++++ |+.++.....++.+++|+|||||.|++.+....
T Consensus 142 ~v~~~~~l-~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 142 MVVLNFTL-QFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp EEEEESCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred cceeeeee-eecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 99999999 555544456899999999999999999876543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.5e-15 Score=133.15 Aligned_cols=146 Identities=17% Similarity=0.098 Sum_probs=115.9
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEec-cccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTT-GFMD 390 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~-~~L~ 390 (467)
+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++. .+.++.+|...+++++++||+|+++ .++
T Consensus 44 ~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~- 118 (195)
T 3cgg_A 44 APRGA--KILDAGCGQGRIGGYLSKQGHDVLG--TDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVM- 118 (195)
T ss_dssp SCTTC--EEEEETCTTTHHHHHHHHTTCEEEE--EESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCG-
T ss_pred ccCCC--eEEEECCCCCHHHHHHHHCCCcEEE--EcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHH-
Confidence 34454 8999999999999999999988988 677788888888764 4889999999888888999999998 566
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccC----CCCceEEEEEeecC
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPK----SKDEVYLSALLEKP 463 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k----~~devyl~avlqKP 463 (467)
|+........++.++.++|+|||.+++..........+.+.+.+++.||.......... ..+..++..+++|+
T Consensus 119 ~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 119 GFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred hhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 44444446789999999999999999987766555677899999999998876543311 23344667778875
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=139.55 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=115.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
.+.+.+.+.++. +|||+|||+|.++..+++.+ ..+++ +|+++.+++.++++ + .+.++.+|...++++
T Consensus 28 ~~~~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 28 KVLKEFGLKEGM--TVLDVGTGAGFYLPYLSKMVGEKGKVYA--IDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHHHTCCTTC--EEEESSCTTCTTHHHHHHHHTTTCEEEE--EESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred HHHHHhCCCCCC--EEEEEecCCCHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC
Confidence 344555666665 89999999999999999885 67888 77788888877654 2 478999999999998
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------CHHHHHHHHHHcCceeeEEEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+++||+|+++.+++|+.+. ..++.++.|+|||||.+++.++..... ..+++.+++++.||+.+....
T Consensus 104 ~~~fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 180 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEP---LKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVE 180 (219)
T ss_dssp SSCEEEEEEESCGGGCSSH---HHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCeeEEEeehhhhhcCCH---HHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEe
Confidence 9999999999999777554 689999999999999999987654322 356899999999999887644
Q ss_pred ccCCCCceEEEEEeecCC
Q 012235 447 SPKSKDEVYLSALLEKPP 464 (467)
Q Consensus 447 ~~k~~devyl~avlqKP~ 464 (467)
... .+...+.+||.
T Consensus 181 ~~~----~~~~~~~~k~~ 194 (219)
T 3dh0_A 181 VGK----YCFGVYAMIVK 194 (219)
T ss_dssp ETT----TEEEEEEECC-
T ss_pred eCC----ceEEEEEEecc
Confidence 322 23334566663
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=144.02 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=108.0
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccceEEec
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
.+.++. +|||+|||+|.++..++++ +..|++ +|+++.+++.+.++. .+.++++|...+|+++++||+|++.
T Consensus 52 ~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 127 (266)
T 3ujc_A 52 ELNENS--KVLDIGSGLGGGCMYINEKYGAHTHG--IDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSR 127 (266)
T ss_dssp CCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEE
T ss_pred CCCCCC--EEEEECCCCCHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHH
Confidence 344454 8999999999999999998 889998 778899999998763 5789999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------CCHHHHHHHHHHcCceeeEEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
.+++|+.. .....++.++.|+|||||.+++.++.... ...+.+.+++++.||+.+....
T Consensus 128 ~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 205 (266)
T 3ujc_A 128 DAILALSL-ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKD 205 (266)
T ss_dssp SCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhcCh-HHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 99977632 33579999999999999999998765433 1355888999999998887653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=141.76 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=108.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~s 379 (467)
.+.+.+.+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.++++ + .+.++++|+..+|+++++
T Consensus 12 ~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 12 LMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIG--VDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEE--EESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred hHHHHhCcCCCC--EEEEEccCcCHHHHHHHHhCCEEEE--EECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 455667777776 9999999999999999999888888 77788888877653 2 478899999999998999
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC----------------------CCHHHHHHHHHHc
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----------------------KDLDDYMYMFLQF 437 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----------------------~~~~~~~~~i~~~ 437 (467)
||+|++..+++|+.+. ..++.++.|+|||||.+++.++.... ...+.+.+++++.
T Consensus 88 fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 164 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDV---RKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSAN 164 (239)
T ss_dssp EEEEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHT
T ss_pred EEEEEECCchhhccCH---HHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHC
Confidence 9999999999777655 68999999999999999997654322 1244788888999
Q ss_pred CceeeEEE
Q 012235 438 RYKKHKWA 445 (467)
Q Consensus 438 Gf~~l~W~ 445 (467)
||..+...
T Consensus 165 Gf~~~~~~ 172 (239)
T 1xxl_A 165 QLAYQDIQ 172 (239)
T ss_dssp TEEEEEEE
T ss_pred CCcEEEEE
Confidence 99866554
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-15 Score=143.63 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=86.2
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEecc-ccccccchhh
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTG-FMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~-~L~h~~~~~~ 397 (467)
+|||+|||+|.++..+++.+..|++ +|+++.+++.++++. .+.++++|+..+++ +++||+|++.. +++|+.+...
T Consensus 53 ~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~ 129 (263)
T 3pfg_A 53 SLLDVACGTGMHLRHLADSFGTVEG--LELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAE 129 (263)
T ss_dssp EEEEETCTTSHHHHHHTTTSSEEEE--EESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHH
T ss_pred cEEEeCCcCCHHHHHHHHcCCeEEE--EECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHH
Confidence 8999999999999999999999988 778899999988764 48899999999888 88999999998 9977766555
Q ss_pred HHHHHHHHHhccCCCcEEEEEe
Q 012235 398 LDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~ 419 (467)
...++.++.++|||||.|++..
T Consensus 130 ~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 130 LDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCcEEEEEe
Confidence 7889999999999999999963
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=135.77 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=109.3
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccceEE
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
..+...++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ +.+.++++|+..++ ++++||+|+
T Consensus 45 ~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 119 (216)
T 3ofk_A 45 LSLSSGAVS--NGLEIGCAAGAFTEKLAPHCKRLTV--IDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIV 119 (216)
T ss_dssp HHTTTSSEE--EEEEECCTTSHHHHHHGGGEEEEEE--EESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEE
T ss_pred HHcccCCCC--cEEEEcCCCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEE
Confidence 334444443 8999999999999999999888888 77888999888765 24789999999988 689999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc-------CCCCHHHHHHHHHHcCceeeEEEEcc-CCCCceEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC-------NKKDLDDYMYMFLQFRYKKHKWAISP-KSKDEVYL 456 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~-------~~~~~~~~~~~i~~~Gf~~l~W~~~~-k~~devyl 456 (467)
++.+++|+.+...+..++.++.++|||||.+++.++.. .....+.+..++... +..+...... ...++-++
T Consensus 120 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~ 198 (216)
T 3ofk_A 120 VAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEA-LTEVERVQCQGQSADEDCL 198 (216)
T ss_dssp EESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHHH-SEEEEEEEEECSSTTCEEE
T ss_pred EccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHhh-ccceEEEeccCCccccchh
Confidence 99999888776666789999999999999999976322 122333444555432 3333222111 12344567
Q ss_pred EEEeecCCC
Q 012235 457 SALLEKPPR 465 (467)
Q Consensus 457 ~avlqKP~~ 465 (467)
..+++||.+
T Consensus 199 l~~~~~~~~ 207 (216)
T 3ofk_A 199 LARFRNPER 207 (216)
T ss_dssp EEEEECCC-
T ss_pred HHHHhCCcc
Confidence 778999854
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=134.98 Aligned_cols=130 Identities=11% Similarity=0.060 Sum_probs=107.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCccCCCccceEEeccccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+.++. +|||+|||+|.++..+++.+.++++ +|+++.+++.+++.+ .+.++++|+..+ +++++||+|+++.+++
T Consensus 44 ~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~ 118 (218)
T 3ou2_A 44 GNIRG--DVLELASGTGYWTRHLSGLADRVTA--LDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLA 118 (218)
T ss_dssp TTSCS--EEEEESCTTSHHHHHHHHHSSEEEE--EESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGG
T ss_pred CCCCC--eEEEECCCCCHHHHHHHhcCCeEEE--EeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhh
Confidence 55555 8999999999999999999999998 778899999988765 378899999888 7789999999999996
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------------------CCHHHHHHHHHHcCc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------------------KDLDDYMYMFLQFRY 439 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------------------~~~~~~~~~i~~~Gf 439 (467)
|+.++ ....++.++.++|||||.+++.++.... ...+++.+++++.||
T Consensus 119 ~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 197 (218)
T 3ou2_A 119 HVPDD-RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGW 197 (218)
T ss_dssp GSCHH-HHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTE
T ss_pred cCCHH-HHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCC
Confidence 66553 3578999999999999999998663321 144588999999999
Q ss_pred eeeEEEEcc
Q 012235 440 KKHKWAISP 448 (467)
Q Consensus 440 ~~l~W~~~~ 448 (467)
+...|....
T Consensus 198 ~v~~~~~~~ 206 (218)
T 3ou2_A 198 SCSVDEVHP 206 (218)
T ss_dssp EEEEEEEET
T ss_pred EEEeeeccc
Confidence 977776643
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-16 Score=149.06 Aligned_cols=169 Identities=20% Similarity=0.260 Sum_probs=121.0
Q ss_pred CCCCcHH-HHHHHHHcCCCCCCCCCccccCCCCCCCCccCCccCCCCCCCCcccccccccccccccccCCCCCCCCccCC
Q 012235 206 YCKDDWN-LAQKLMVNGCDPLPRRRCLTRASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTG 284 (467)
Q Consensus 206 ~Cp~d~~-l~~~l~~~~C~plprr~C~~~ap~gY~~plp~P~s~~~~p~d~~~~W~~y~c~~~~cl~s~~~~~~~~~C~~ 284 (467)
.||.|.. +.+......|+. +|+++.+..||.+.++.+.+....|++..
T Consensus 4 ~Cp~C~~~~~~~~~~~~C~~---~~~~~~~~~Gy~~~~~~~~~~~~~~~~~~---------------------------- 52 (269)
T 1p91_A 4 SCPLCHQPLSREKNSYICPQ---RHQFDMAKEGYVNLLPVQHKRSRDPGDSA---------------------------- 52 (269)
T ss_dssp BCTTTCCBCEEETTEEECTT---CCEEEBCTTSCEECSCSSSSCSCCCSSSH----------------------------
T ss_pred cCCCCCccceeCCCEEECCC---CCcCCcCCCEEEEeecccccCCCCCCCCH----------------------------
Confidence 4999865 322223458987 89999999999998887665433333222
Q ss_pred chhhhcccccccccCCcChHH--HHHHHhc--C-CCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHH
Q 012235 285 CFEMDKEKPKWVANRSVPVDF--LISDILA--I-KPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMI 357 (467)
Q Consensus 285 cfdm~~e~~~W~~~~~~~~d~--~I~~lL~--l-~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a 357 (467)
++...+..|.. .+.+... .+.+++. + .++. +|||+|||+|.++..+++. +..+++ +|+++.+++.+
T Consensus 53 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a 125 (269)
T 1p91_A 53 --EMMQARRAFLD-AGHYQPLRDAIVAQLRERLDDKAT--AVLDIGCGEGYYTHAFADALPEITTFG--LDVSKVAIKAA 125 (269)
T ss_dssp --HHHHHHHHHHT-TTTTHHHHHHHHHHHHHHSCTTCC--EEEEETCTTSTTHHHHHHTCTTSEEEE--EESCHHHHHHH
T ss_pred --HHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCCCCC--EEEEECCCCCHHHHHHHHhCCCCeEEE--EeCCHHHHHHH
Confidence 23334444444 3332211 1222222 1 3444 8999999999999999987 778888 77889999999
Q ss_pred HHcCC-ccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 358 ALRGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 358 ~~rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.++.. +.+..+|...+|+++++||+|++..+. ..+.++.|+|||||.+++.++..
T Consensus 126 ~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 126 AKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp HHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC----------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred HHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh----------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 87753 789999999999989999999997764 35899999999999999987654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-14 Score=133.84 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=105.5
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCccCCCccceEEec
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
+.+...++. +|||+|||+|.++..+++++..+++ +|+++.+++.++++. .+.++++|+..++++ ++||+|++.
T Consensus 39 ~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~ 113 (220)
T 3hnr_A 39 EDVVNKSFG--NVLEFGVGTGNLTNKLLLAGRTVYG--IEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVST 113 (220)
T ss_dssp HHHHHTCCS--EEEEECCTTSHHHHHHHHTTCEEEE--ECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEE
T ss_pred HHhhccCCC--eEEEeCCCCCHHHHHHHhCCCeEEE--EeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEEC
Confidence 334444555 8999999999999999999999998 788899999888763 488999999999987 999999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------------------------CHHHHHHHHHHcC
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------------------------DLDDYMYMFLQFR 438 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------------------------~~~~~~~~i~~~G 438 (467)
.+++|+.+.. ...++.++.|+|||||.+++.++..... ..+++.+++++.|
T Consensus 114 ~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 192 (220)
T 3hnr_A 114 YAFHHLTDDE-KNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNG 192 (220)
T ss_dssp SCGGGSCHHH-HHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTT
T ss_pred cchhcCChHH-HHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCC
Confidence 9996666552 3459999999999999999987543221 2357888999999
Q ss_pred ceeeEEE
Q 012235 439 YKKHKWA 445 (467)
Q Consensus 439 f~~l~W~ 445 (467)
|+.....
T Consensus 193 f~v~~~~ 199 (220)
T 3hnr_A 193 FHVTFTR 199 (220)
T ss_dssp EEEEEEE
T ss_pred CEEEEee
Confidence 9755443
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=144.01 Aligned_cols=128 Identities=20% Similarity=0.192 Sum_probs=105.8
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCccceE
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
.+.++. +|||||||+|.++..+++. +..|++ +|+++.+++.++++ ..+.++++|+..+|+++++||+|
T Consensus 79 ~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 154 (297)
T 2o57_A 79 VLQRQA--KGLDLGAGYGGAARFLVRKFGVSIDC--LNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI 154 (297)
T ss_dssp CCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCC--EEEEeCCCCCHHHHHHHHHhCCEEEE--EeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEE
Confidence 555665 8999999999999999987 888888 77788888877653 24789999999999999999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------CCHHHHHHHHHHcCceeeEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------KDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------~~~~~~~~~i~~~Gf~~l~W 444 (467)
++..+++|+.+. ..++.++.|+|||||.+++.++.... .....+.+++++.||..+..
T Consensus 155 ~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 155 WSQDAFLHSPDK---LKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT 231 (297)
T ss_dssp EEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred EecchhhhcCCH---HHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 999999888764 68999999999999999998764322 13447788999999988876
Q ss_pred EE
Q 012235 445 AI 446 (467)
Q Consensus 445 ~~ 446 (467)
..
T Consensus 232 ~~ 233 (297)
T 2o57_A 232 FS 233 (297)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=134.87 Aligned_cols=130 Identities=16% Similarity=0.312 Sum_probs=108.4
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-----------CccEEEccCCCCccCCCccce
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-----------LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-----------~i~~~~~d~~~Lpf~d~sFDl 382 (467)
.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.++++. .+.++.++...+++++++||+
T Consensus 29 ~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 104 (235)
T 3sm3_A 29 QEDD--EILDIGCGSGKISLELASKGYSVTG--IDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDF 104 (235)
T ss_dssp CTTC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEE
T ss_pred CCCC--eEEEECCCCCHHHHHHHhCCCeEEE--EECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeE
Confidence 3454 8999999999999999999999998 777888888887632 257889999999998999999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC--------------------------------------C
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN--------------------------------------K 424 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~--------------------------------------~ 424 (467)
|++..+++|+.+......++.++.++|||||.+++.++... .
T Consensus 105 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (235)
T 3sm3_A 105 AVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHH 184 (235)
T ss_dssp EEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEEC
T ss_pred EEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEe
Confidence 99999998887775556899999999999999999876332 1
Q ss_pred CCHHHHHHHHHHcCceeeEEEEc
Q 012235 425 KDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 425 ~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
-..+++.+++++.||+.+.+...
T Consensus 185 ~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 185 FTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp BCHHHHHHHHHTTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEEEEec
Confidence 24568999999999998887654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=141.38 Aligned_cols=124 Identities=10% Similarity=0.109 Sum_probs=104.1
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.+|||+|||+|.++..+++.+. .|++ +|+++.+++.++++. .+.++++|+..+++++++||+|++..+++|+.+
T Consensus 46 ~~vLD~GcG~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 123 (253)
T 3g5l_A 46 KTVLDLGCGFGWHCIYAAEHGAKKVLG--IDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS 123 (253)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEE--EECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhh
Confidence 3899999999999999999987 8888 778899999988763 478999999999998999999999999977754
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccC------------C-------------------------------CCHHHHH
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCN------------K-------------------------------KDLDDYM 431 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~------------~-------------------------------~~~~~~~ 431 (467)
. ..++.++.|+|||||.+++..+... . ...+++.
T Consensus 124 ~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 200 (253)
T 3g5l_A 124 F---DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYI 200 (253)
T ss_dssp H---HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHH
T ss_pred H---HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHH
Confidence 4 6899999999999999999743210 0 0556899
Q ss_pred HHHHHcCceeeEEEEc
Q 012235 432 YMFLQFRYKKHKWAIS 447 (467)
Q Consensus 432 ~~i~~~Gf~~l~W~~~ 447 (467)
+++++.||+.+.....
T Consensus 201 ~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 201 QTLLKNGFQINSVIEP 216 (253)
T ss_dssp HHHHHTTEEEEEEECC
T ss_pred HHHHHcCCeeeeeecC
Confidence 9999999998877643
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=135.18 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=105.2
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC---ccCCC-ccceE
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL---PFFDN-TMDLI 383 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L---pf~d~-sFDlV 383 (467)
...+...++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+++++.+.+..++...+ ++.++ +||+|
T Consensus 45 ~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v 120 (227)
T 3e8s_A 45 LLAILGRQPE--RVLDLGCGEGWLLRALADRGIEAVG--VDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLI 120 (227)
T ss_dssp HHHHHHTCCS--EEEEETCTTCHHHHHHHTTTCEEEE--EESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred HHHhhcCCCC--EEEEeCCCCCHHHHHHHHCCCEEEE--EcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEE
Confidence 3334434444 8999999999999999999999988 778899999999887788999887766 54444 59999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-----------------------------CCHHHHHHHH
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-----------------------------KDLDDYMYMF 434 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-----------------------------~~~~~~~~~i 434 (467)
+++.+++ ..+. ..++.++.++|||||++++.++.... ...+++.+++
T Consensus 121 ~~~~~l~-~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (227)
T 3e8s_A 121 CANFALL-HQDI---IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNAL 196 (227)
T ss_dssp EEESCCC-SSCC---HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHH
T ss_pred EECchhh-hhhH---HHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHH
Confidence 9999994 4433 68999999999999999998763211 1456899999
Q ss_pred HHcCceeeEEEE
Q 012235 435 LQFRYKKHKWAI 446 (467)
Q Consensus 435 ~~~Gf~~l~W~~ 446 (467)
++.||+.+....
T Consensus 197 ~~aGf~~~~~~~ 208 (227)
T 3e8s_A 197 DMAGLRLVSLQE 208 (227)
T ss_dssp HHTTEEEEEEEC
T ss_pred HHcCCeEEEEec
Confidence 999999988765
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.8e-15 Score=138.07 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=105.7
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccceEEecccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++. .+.++++|+..+++++++||+|++..++
T Consensus 51 ~~~~~--~vLDiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 126 (242)
T 3l8d_A 51 VKKEA--EVLDVGCGDGYGTYKLSRTGYKAVG--VDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSL 126 (242)
T ss_dssp SCTTC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred cCCCC--eEEEEcCCCCHHHHHHHHcCCeEEE--EECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChH
Confidence 34455 8999999999999999999999998 777889999988763 4789999999999989999999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------CCHHHHHHHHHHcCceeeEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------KDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+|+.+. ..++.++.++|||||.+++.++.... -..+.+.+++++.||+.+...
T Consensus 127 ~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 127 EWTEEP---LRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp TSSSCH---HHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hhccCH---HHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 777555 68999999999999999998754321 134578899999999887654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.5e-15 Score=137.79 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=84.6
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEecc-ccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTG-FMDGW 392 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~-~L~h~ 392 (467)
.+|||+|||+|.++..+++.+.++++ +|+++.+++.+.++ + .+.++++|+..++++ ++||+|++.. +++|+
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~~~~~~~--~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~ 115 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPKFKNTWA--VDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYI 115 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSSEEEE--ECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGC
T ss_pred CeEEEeCCCCCHHHHHHHHCCCcEEE--EECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcccccc
Confidence 38999999999999999999989888 78888888887654 2 478899999988876 8999999998 99777
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+......++.++.++|||||.+++..
T Consensus 116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 116 IDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 555556899999999999999999853
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=131.60 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=101.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~s 379 (467)
.+.+.+...++. +|||+|||+|.++..+++.+..+++ +|+++.+++.++++ + .+.++.+|...+++ +++
T Consensus 23 ~l~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 97 (199)
T 2xvm_A 23 EVLEAVKVVKPG--KTLDLGCGNGRNSLYLAANGYDVDA--WDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQ 97 (199)
T ss_dssp HHHHHTTTSCSC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCC
T ss_pred HHHHHhhccCCC--eEEEEcCCCCHHHHHHHHCCCeEEE--EECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCC
Confidence 344556655555 8999999999999999999999998 67778888777643 2 47889999998888 889
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-----------CHHHHHHHHHHcCceeeEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-----------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-----------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
||+|++..+++|+. ......++.++.++|||||.+++.++....+ ..+++.++++. |+.+.+.
T Consensus 98 ~D~v~~~~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 98 YDFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp EEEEEEESCGGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred ceEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 99999999996554 3346789999999999999988876543221 33477777776 6666654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=141.61 Aligned_cols=127 Identities=13% Similarity=-0.032 Sum_probs=100.5
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-----------------------CccEEEccC
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-----------------------LIPLYVTLN 370 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-----------------------~i~~~~~d~ 370 (467)
.++. +|||+|||+|..+..|+++|.+|+| +|+|+.|++.++++. .+.++++|+
T Consensus 67 ~~~~--~vLD~GCG~G~~~~~La~~G~~V~g--vD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 142 (252)
T 2gb4_A 67 QSGL--RVFFPLCGKAIEMKWFADRGHTVVG--VEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI 142 (252)
T ss_dssp CCSC--EEEETTCTTCTHHHHHHHTTCEEEE--ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred CCCC--eEEEeCCCCcHHHHHHHHCCCeEEE--EECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence 3454 8999999999999999999999999 889999999886432 378999999
Q ss_pred CCCccCC-CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC---------CCHHHHHHHHHHcCce
Q 012235 371 QRLPFFD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK---------KDLDDYMYMFLQFRYK 440 (467)
Q Consensus 371 ~~Lpf~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~---------~~~~~~~~~i~~~Gf~ 440 (467)
..+++.+ ++||+|++..++.|+. ......++.++.|+|||||.|++.++.... -..+++.+++.. +|+
T Consensus 143 ~~l~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~ 220 (252)
T 2gb4_A 143 FDLPRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCS 220 (252)
T ss_dssp TTGGGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEE
T ss_pred ccCCcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeE
Confidence 9998864 8999999999996654 334578999999999999999765543211 134577888876 487
Q ss_pred eeEEEE
Q 012235 441 KHKWAI 446 (467)
Q Consensus 441 ~l~W~~ 446 (467)
.+.+..
T Consensus 221 v~~~~~ 226 (252)
T 2gb4_A 221 MQCLEE 226 (252)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 776654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=139.11 Aligned_cols=132 Identities=23% Similarity=0.332 Sum_probs=106.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.++. +|||||||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|+..+|+++++|
T Consensus 55 ~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 130 (273)
T 3bus_A 55 ALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTG--ISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASF 130 (273)
T ss_dssp HHSCCCTTC--EEEEESCTTSHHHHHHHHHSCCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCE
T ss_pred HhcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCEEEE--EeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCc
Confidence 344555555 8999999999999999875 788888 77788888777653 3 3789999999999989999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC----------------------CCHHHHHHHHHHcC
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----------------------KDLDDYMYMFLQFR 438 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----------------------~~~~~~~~~i~~~G 438 (467)
|+|++..+++|+.+. ..++.++.|+|||||.+++.++.... ...+.+.+++++.|
T Consensus 131 D~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 207 (273)
T 3bus_A 131 DAVWALESLHHMPDR---GRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAE 207 (273)
T ss_dssp EEEEEESCTTTSSCH---HHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTT
T ss_pred cEEEEechhhhCCCH---HHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcC
Confidence 999999999777655 68999999999999999998764321 13357888899999
Q ss_pred ceeeEEEEc
Q 012235 439 YKKHKWAIS 447 (467)
Q Consensus 439 f~~l~W~~~ 447 (467)
|+.+.+...
T Consensus 208 f~~~~~~~~ 216 (273)
T 3bus_A 208 LVVTSTVDI 216 (273)
T ss_dssp CEEEEEEEC
T ss_pred CeEEEEEEC
Confidence 998877643
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.5e-15 Score=139.36 Aligned_cols=124 Identities=11% Similarity=0.124 Sum_probs=103.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC--ccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL--PFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L--pf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|||||||+|.++..+++.+..|++ +|+++.+++.+.++ +.++.+|...+ ++++++||+|++..+++|+.++ .
T Consensus 44 ~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~-~ 118 (240)
T 3dli_A 44 RVLDIGCGRGEFLELCKEEGIESIG--VDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE-R 118 (240)
T ss_dssp CEEEETCTTTHHHHHHHHHTCCEEE--ECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGG-G
T ss_pred eEEEEeCCCCHHHHHHHhCCCcEEE--EECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcH-H
Confidence 8999999999999999999999988 78889999988877 78888887775 7888999999999999776643 3
Q ss_pred HHHHHHHHHhccCCCcEEEEEecccCC----------------CCHHHHHHHHHHcCceeeEEEEcc
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFCNK----------------KDLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~~~----------------~~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
+..++.++.|+|||||.+++.++.... -..+.+.+++++.||+.+......
T Consensus 119 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 119 LFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp HHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence 578999999999999999998765332 134588899999999887665443
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=139.61 Aligned_cols=128 Identities=19% Similarity=0.267 Sum_probs=103.6
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||||||+|.++..+++.+ ..|++ +|+++.+++.++++ ..+.++++|...+|+++++||+|+
T Consensus 44 ~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 119 (267)
T 3kkz_A 44 LTEKS--LIADIGCGTGGQTMVLAGHVTGQVTG--LDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW 119 (267)
T ss_dssp CCTTC--EEEEETCTTCHHHHHHHTTCSSEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHhccCCEEEE--EeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEE
Confidence 34444 89999999999999999984 48888 77788888877654 238899999999999899999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+..+++|+ +. ..++.++.++|||||.+++.++..... ....+.+++++.||+.+....
T Consensus 120 ~~~~~~~~-~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 120 SEGAIYNI-GF---ERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp ESSCGGGT-CH---HHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred EcCCceec-CH---HHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 99999776 43 689999999999999999987653221 234677889999999887755
Q ss_pred cc
Q 012235 447 SP 448 (467)
Q Consensus 447 ~~ 448 (467)
..
T Consensus 196 ~~ 197 (267)
T 3kkz_A 196 LP 197 (267)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=141.49 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=102.9
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCc-cCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLP-FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lp-f~d~sFDlVis~~~L~ 390 (467)
.+|||||||+|.++..+++.+..|++ +|+++.+++.+.++ ..+.++++|+..++ +.+++||+|++..+++
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 147 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGHQVIL--CDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE 147 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred CEEEEeCCcchHHHHHHHHCCCEEEE--EECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence 38999999999999999999999999 77788888888764 23779999999888 7889999999999997
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccC-------------------------------CCCHHHHHHHHHHcCc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------------------------KKDLDDYMYMFLQFRY 439 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------------------------~~~~~~~~~~i~~~Gf 439 (467)
|+.+. ..++.++.++|||||.+++..+... .-..+++.+++++.||
T Consensus 148 ~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 224 (285)
T 4htf_A 148 WVADP---RSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGW 224 (285)
T ss_dssp GCSCH---HHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTC
T ss_pred cccCH---HHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCC
Confidence 77655 6899999999999999999765211 1134689999999999
Q ss_pred eeeEEEE
Q 012235 440 KKHKWAI 446 (467)
Q Consensus 440 ~~l~W~~ 446 (467)
+.+.+..
T Consensus 225 ~v~~~~~ 231 (285)
T 4htf_A 225 QIMGKTG 231 (285)
T ss_dssp EEEEEEE
T ss_pred ceeeeee
Confidence 9887754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=138.37 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=102.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||+|||+|.++..+++.+. .|++ +|+++.+++.++++ + .+.++++|+..+|+++++||+|+
T Consensus 44 ~~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 119 (257)
T 3f4k_A 44 LTDDA--KIADIGCGTGGQTLFLADYVKGQITG--IDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIW 119 (257)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHCCSEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCCC--eEEEeCCCCCHHHHHHHHhCCCeEEE--EECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEE
Confidence 34454 899999999999999999854 8888 77788888877653 2 27899999999999899999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+..+++|+ +. ..++.++.++|||||++++.++..... ..+.+.+++++.||..+....
T Consensus 120 ~~~~l~~~-~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (257)
T 3f4k_A 120 SEGAIYNI-GF---ERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFI 195 (257)
T ss_dssp EESCSCCC-CH---HHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred ecChHhhc-CH---HHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 99999766 43 689999999999999999987543221 234778899999998887543
Q ss_pred c
Q 012235 447 S 447 (467)
Q Consensus 447 ~ 447 (467)
.
T Consensus 196 ~ 196 (257)
T 3f4k_A 196 L 196 (257)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=133.63 Aligned_cols=122 Identities=23% Similarity=0.366 Sum_probs=100.6
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..++++ +.++++ +|+++.+++.++++ + .+.++++|...+++++++||+|+++.+++|
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRA--LDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEE--EECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 8999999999999999987 667777 77788888887664 2 478999999999999999999999999977
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CHHHHHHHHHHcCceeeEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~~~~~~~i~~~Gf~~l~W 444 (467)
+.+. ..++.++.|+|||||.+++.+...... ..+.+.+++++.||+.+..
T Consensus 124 ~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 200 (219)
T 3dlc_A 124 WEDV---ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI 200 (219)
T ss_dssp CSCH---HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred ccCH---HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence 7544 689999999999999999976443210 1247888999999988876
Q ss_pred EE
Q 012235 445 AI 446 (467)
Q Consensus 445 ~~ 446 (467)
..
T Consensus 201 ~~ 202 (219)
T 3dlc_A 201 IL 202 (219)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=138.23 Aligned_cols=128 Identities=16% Similarity=0.077 Sum_probs=104.6
Q ss_pred ceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
.+|||||||+|.++..+++++ ..+++ +|+++.+++.++++. .+.++++|+..+++++++||+|++..+++|+.
T Consensus 95 ~~vLDiG~G~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 172 (254)
T 1xtp_A 95 SRALDCGAGIGRITKNLLTKLYATTDL--LEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLT 172 (254)
T ss_dssp SEEEEETCTTTHHHHHTHHHHCSEEEE--EESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSC
T ss_pred CEEEEECCCcCHHHHHHHHhhcCEEEE--EeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCC
Confidence 389999999999999999884 45788 778899999888763 47889999999998889999999999997665
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------CHHHHHHHHHHcCceeeEEEEccC
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------------DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------------~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
+ .....++.++.|+|||||.+++.+...... ..+.+.+++++.||+.+.......
T Consensus 173 ~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 240 (254)
T 1xtp_A 173 D-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEE 240 (254)
T ss_dssp H-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTT
T ss_pred H-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeecCC
Confidence 4 335789999999999999999987532211 346899999999999988765543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=140.73 Aligned_cols=131 Identities=13% Similarity=0.223 Sum_probs=106.0
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEec
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
+.+.+...++. +|||||||+|.++..+++.+..|+| +|+++.+++.++++..+.++++|+..+|+++++||+|++.
T Consensus 26 l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (261)
T 3ege_A 26 IINLLNLPKGS--VIADIGAGTGGYSVALANQGLFVYA--VEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISI 101 (261)
T ss_dssp HHHHHCCCTTC--EEEEETCTTSHHHHHHHTTTCEEEE--ECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEE
T ss_pred HHHHhCCCCCC--EEEEEcCcccHHHHHHHhCCCEEEE--EeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEc
Confidence 44555555555 8999999999999999999999999 7888888887776667889999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceeeEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
.+++|+.+. ..++.++.|+|| ||.+++.++..... ..+.+. ++++.||..+...
T Consensus 102 ~~l~~~~~~---~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~ 176 (261)
T 3ege_A 102 LAIHHFSHL---EKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAI 176 (261)
T ss_dssp SCGGGCSSH---HHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEE
T ss_pred chHhhccCH---HHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEE
Confidence 999777554 689999999999 99888876642110 123566 8999999777654
Q ss_pred E
Q 012235 446 I 446 (467)
Q Consensus 446 ~ 446 (467)
.
T Consensus 177 ~ 177 (261)
T 3ege_A 177 P 177 (261)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-14 Score=138.21 Aligned_cols=132 Identities=15% Similarity=0.254 Sum_probs=106.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEe
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
+.+.+...++. +|||||||+|.++..+++.+..|++ +|+++.|++.+.++. .+.+.++|+..+|+ +++||+|++
T Consensus 49 l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~ 123 (279)
T 3ccf_A 49 LLQLLNPQPGE--FILDLGCGTGQLTEKIAQSGAEVLG--TDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFS 123 (279)
T ss_dssp HHHHHCCCTTC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEE
T ss_pred HHHHhCCCCCC--EEEEecCCCCHHHHHHHhCCCeEEE--EECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEE
Confidence 34555665555 8999999999999999998889998 778899999988763 58899999999987 689999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC----------------------------CCHHHHHHHHHHc
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----------------------------KDLDDYMYMFLQF 437 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----------------------------~~~~~~~~~i~~~ 437 (467)
..+++|+.+. ..++.++.|+|||||.+++..+.... ...+.+.+++++.
T Consensus 124 ~~~l~~~~d~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 200 (279)
T 3ccf_A 124 NAMLHWVKEP---EAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQ 200 (279)
T ss_dssp ESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHH
T ss_pred cchhhhCcCH---HHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHc
Confidence 9999665554 68999999999999999997654321 1234678888888
Q ss_pred CceeeEEEE
Q 012235 438 RYKKHKWAI 446 (467)
Q Consensus 438 Gf~~l~W~~ 446 (467)
||+.+.+..
T Consensus 201 Gf~~~~~~~ 209 (279)
T 3ccf_A 201 GFDVTYAAL 209 (279)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEE
Confidence 998776543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=135.35 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=109.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFD 381 (467)
.+..++...++. +|||+|||+|.++..+++.+. .+++ +|+++.+++.++++. .+.++++|+..+++++++||
T Consensus 34 ~l~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 34 ALRAMLPEVGGL--RIVDLGCGFGWFCRWAHEHGASYVLG--LDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHHSCCCTTC--EEEEETCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred HHHHhccccCCC--EEEEEcCcCCHHHHHHHHCCCCeEEE--EcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence 455566655555 899999999999999999988 8888 777899999988764 37889999999988889999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC---------------------C----------------
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN---------------------K---------------- 424 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~---------------------~---------------- 424 (467)
+|++..+++|+.+. ..++.++.++|||||.+++..+... .
T Consensus 110 ~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (243)
T 3bkw_A 110 LAYSSLALHYVEDV---ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG 186 (243)
T ss_dssp EEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHS
T ss_pred EEEEeccccccchH---HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCc
Confidence 99999999776544 6899999999999999999753210 0
Q ss_pred -----CCHHHHHHHHHHcCceeeEEEEc
Q 012235 425 -----KDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 425 -----~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
...+++.+++++.||+.+.+...
T Consensus 187 ~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 187 VVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 13568899999999999887654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-14 Score=133.38 Aligned_cols=124 Identities=14% Similarity=0.151 Sum_probs=100.9
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
.+|||+|||+|.++..+++. +..+++ +|+++.+++.++++- .+.++++|+..+++. ++||+|++..+++|+
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEATFTL--VDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHL 122 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGGS
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccccC
Confidence 38999999999999999998 778888 778889998887652 478999999999886 899999999999666
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCCC--------------------------------------CHHHHHHHH
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--------------------------------------DLDDYMYMF 434 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------------------------~~~~~~~~i 434 (467)
.+. ....++.++.|+|||||.+++.++..... ..+++.+++
T Consensus 123 ~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 201 (234)
T 3dtn_A 123 EDE-DKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWL 201 (234)
T ss_dssp CHH-HHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHH
Confidence 443 34569999999999999999987554321 224667789
Q ss_pred HHcCceeeEEEE
Q 012235 435 LQFRYKKHKWAI 446 (467)
Q Consensus 435 ~~~Gf~~l~W~~ 446 (467)
++.||+.+....
T Consensus 202 ~~aGF~~v~~~~ 213 (234)
T 3dtn_A 202 KEAGFRDVSCIY 213 (234)
T ss_dssp HHTTCEEEEEEE
T ss_pred HHcCCCceeeee
Confidence 999998875543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=142.69 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=104.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||+|||+|.++..++++ +..|++ +|+++.+++.++++ + .+.++++|+..+|+++++||+|+
T Consensus 115 ~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 190 (312)
T 3vc1_A 115 AGPDD--TLVDAGCGRGGSMVMAHRRFGSRVEG--VTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASW 190 (312)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred CCCCC--EEEEecCCCCHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEE
Confidence 44555 8999999999999999998 889998 77788888877653 2 47899999999999899999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC--------------------CHHHHHHHHHHcCceeeEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--------------------DLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------~~~~~~~~i~~~Gf~~l~W 444 (467)
+..+++|+ + ...++.++.|+|||||.+++.++..... ..+.+.+++++.||+.+..
T Consensus 191 ~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 266 (312)
T 3vc1_A 191 NNESTMYV-D---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI 266 (312)
T ss_dssp EESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred ECCchhhC-C---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence 99999766 4 4689999999999999999987654331 2457888999999988876
Q ss_pred EE
Q 012235 445 AI 446 (467)
Q Consensus 445 ~~ 446 (467)
..
T Consensus 267 ~~ 268 (312)
T 3vc1_A 267 VD 268 (312)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=128.51 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=102.0
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-CCccEEEccCCCCccCCCccceEEecc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-GLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-g~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+.+.+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ ..+.+..+| +++++++||+|++..
T Consensus 11 ~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 11 PNIFEGKKG--VIVDYGCGNGFYCKYLLEFATKLYC--IDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFAN 83 (170)
T ss_dssp HHHHSSCCE--EEEEETCTTCTTHHHHHTTEEEEEE--ECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEES
T ss_pred HhcCcCCCC--eEEEECCCCCHHHHHHHhhcCeEEE--EeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEcc
Confidence 334555555 8999999999999999998767777 78889999988876 347888888 778889999999999
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------CHHHHHHHHHHcCceeeEEEEc
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------DLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
+++|+.+. ..++.++.|+|||||.+++.++..... ..+++.++++ ||+.+.....
T Consensus 84 ~l~~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~ 148 (170)
T 3i9f_A 84 SFHDMDDK---QHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP 148 (170)
T ss_dssp CSTTCSCH---HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred chhcccCH---HHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC
Confidence 99777554 689999999999999999987755322 3457777777 9988876543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-14 Score=132.55 Aligned_cols=126 Identities=14% Similarity=0.080 Sum_probs=103.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-------CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-------LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-------~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++.+..|++ +|+++.+++.++++. .+.++++|+..++ ++++||+|++..+++|+
T Consensus 69 ~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 69 RALVPGCGGGHDVVAMASPERFVVG--LDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEETCTTCHHHHHHCBTTEEEEE--ECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTS
T ss_pred CEEEeCCCCCHHHHHHHhCCCeEEE--EECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcC
Confidence 8999999999999999998888888 788899988887642 2778999998877 46699999999999665
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCC--------CCHHHHHHHHHHcCceeeEEEEccC
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNK--------KDLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------~~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
. +.....++.++.++|||||.+++..+.... -..+.+.++++..||+.+.......
T Consensus 146 ~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 146 E-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENPH 209 (235)
T ss_dssp C-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECTT
T ss_pred C-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecCC
Confidence 4 334678999999999999999997765432 1356899999999999988765544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=142.60 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=85.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc---------CCccEEEccCCCCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR---------GLIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r---------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+|||||||+|.++..+++.+..|++ +|+++.+++.++++ ..+.++++|+..+++ +++||+|++.....
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~ 161 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGWEVTA--LELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSI 161 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTCCEEE--EESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHH
T ss_pred cEEEEeccCCHHHHHHHHcCCeEEE--EECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCccc
Confidence 7999999999999999999999999 77788898888754 347899999999988 78999999775554
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
|+.++.....++.++.++|||||.|++..+..
T Consensus 162 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 162 NELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp TTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 77776557899999999999999999976543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=142.48 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=112.9
Q ss_pred CCCCCCceEEEECCCccHHHHHHhh--C-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMRE--Q-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~--~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+.++. +|||||||+|.++..++. . +..|++ +|+++.+++.+.++ + .+.++++|+..++++ ++||+
T Consensus 116 l~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 190 (305)
T 3ocj_A 116 LRPGC--VVASVPCGWMSELLALDYSACPGVQLVG--IDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDL 190 (305)
T ss_dssp CCTTC--EEEETTCTTCHHHHTSCCTTCTTCEEEE--EESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEE
T ss_pred CCCCC--EEEEecCCCCHHHHHHHHhcCCCCeEEE--EECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEE
Confidence 45555 899999999999999952 2 668888 77788888888754 2 278999999999987 99999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC------------------------------------CC
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK------------------------------------KD 426 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------------------------------~~ 426 (467)
|+++.+++|+.+......++.++.++|||||.+++.++.... ..
T Consensus 191 v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
T 3ocj_A 191 LTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRT 270 (305)
T ss_dssp EECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred EEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCC
Confidence 999999988877765556899999999999999998744210 13
Q ss_pred HHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecC
Q 012235 427 LDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKP 463 (467)
Q Consensus 427 ~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP 463 (467)
.+++.+++++.||+.+..... ....+...+.+||
T Consensus 271 ~~~~~~~l~~aGF~~v~~~~~---~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 271 HAQTRAQLEEAGFTDLRFEDD---RARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHHHTTCEEEEEECC---TTSSSCEEEEECC
T ss_pred HHHHHHHHHHCCCEEEEEEcc---cCceeeEEEEecC
Confidence 558899999999999887652 2334556777887
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.2e-14 Score=132.26 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=104.5
Q ss_pred ceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHcC------CccEEEccCCCCccCCCccceEEecccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALRG------LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~rg------~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
.+|||||||+|.++..+++.+ ..+++ +|+++.+++.++++. .+.++.+|+..+++++++||+|++..+++|
T Consensus 81 ~~vLDiGcG~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 81 SCALDCGAGIGRITKRLLLPLFREVDM--VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp SEEEEETCTTTHHHHHTTTTTCSEEEE--EESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CEEEEECCCCCHHHHHHHHhcCCEEEE--EeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 389999999999999999884 47888 778899998887653 267889999999888889999999999966
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCC------------CCHHHHHHHHHHcCceeeEEEEccC
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK------------KDLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------~~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
+.+. .+..++.++.++|||||.+++.++.... ...+.+.+++++.||+.+.+.....
T Consensus 159 ~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 227 (241)
T 2ex4_A 159 LTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQEN 227 (241)
T ss_dssp SCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCC
Confidence 6554 3468999999999999999997754321 1356899999999999988865543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=8e-14 Score=128.87 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=110.1
Q ss_pred cCCCCCCceEEEECCCccHH-HHHHhhCCCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCccceEEe
Q 012235 312 AIKPGETRIGLDFGVGTGTF-AARMREQNVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~-a~~La~~g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
...++. +|||+|||+|.+ ...+++.+.++++ +|+++.+++.++++ ..+.++++|+..+++++++||+|++
T Consensus 20 ~~~~~~--~vLDiGcG~G~~~~~~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 95 (209)
T 2p8j_A 20 ESNLDK--TVLDCGAGGDLPPLSIFVEDGYKTYG--IEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYS 95 (209)
T ss_dssp HSSSCS--EEEEESCCSSSCTHHHHHHTTCEEEE--EECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred ccCCCC--EEEEECCCCCHHHHHHHHhCCCEEEE--EECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEE
Confidence 344454 899999999987 5566667888988 77888888877653 2488999999999988899999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CHHHHHHHHHHcC
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DLDDYMYMFLQFR 438 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~~~~~~~i~~~G 438 (467)
..+++|+. ......++.++.++|||||.+++.++..... +.+++.+++..+|
T Consensus 96 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g 174 (209)
T 2p8j_A 96 YGTIFHMR-KNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMK 174 (209)
T ss_dssp CSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSE
T ss_pred cChHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcC
Confidence 99997764 3346799999999999999999987643211 2346777788887
Q ss_pred ceeeEEEEcc---CCC--CceEEEEEeecCCCC
Q 012235 439 YKKHKWAISP---KSK--DEVYLSALLEKPPRA 466 (467)
Q Consensus 439 f~~l~W~~~~---k~~--devyl~avlqKP~~~ 466 (467)
+....-.... .+. ...|...+.+|-.++
T Consensus 175 ~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~ 207 (209)
T 2p8j_A 175 VLFKEDRVVERINDGLKIKQGYVDYIAEKFSKS 207 (209)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred ceeeeeeeeehhhcCCcccceeeeeehhhhhhc
Confidence 7544322211 122 356888888886554
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=138.80 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=103.6
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc--C---------------------------------C
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR--G---------------------------------L 362 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r--g---------------------------------~ 362 (467)
.+|||||||+|.++..++..+. .|++ +|+|+.|++.++++ . .
T Consensus 57 ~~vLDiGCG~G~~~~~~~~~~~~~v~g--~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 57 DTLIDIGSGPTIYQVLAACDSFQDITL--SDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp EEEEESSCTTCCGGGTTGGGTEEEEEE--EESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred ceEEEeCCCccHHHHHHHHhhhcceee--ccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 3899999999998888877776 5887 88889998877642 0 0
Q ss_pred c-cEEEccCCCC-cc---CCCccceEEecccccccc-chhhHHHHHHHHHhccCCCcEEEEEecccCC------------
Q 012235 363 I-PLYVTLNQRL-PF---FDNTMDLIHTTGFMDGWL-DMLLLDFILFDWDRILRPGGLLWIDRFFCNK------------ 424 (467)
Q Consensus 363 i-~~~~~d~~~L-pf---~d~sFDlVis~~~L~h~~-~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------ 424 (467)
+ .++++|+... |+ ..++||+|+++++++|.. +...+..++.++.|+|||||+|+++......
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~ 214 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV 214 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeecc
Confidence 2 2778887763 43 357999999999996653 3344678999999999999999998643221
Q ss_pred -CCHHHHHHHHHHcCceeeEEEEccC------CCCceEEEEEeecCC
Q 012235 425 -KDLDDYMYMFLQFRYKKHKWAISPK------SKDEVYLSALLEKPP 464 (467)
Q Consensus 425 -~~~~~~~~~i~~~Gf~~l~W~~~~k------~~devyl~avlqKP~ 464 (467)
-..+++.+.++..||..+.+..... ...+.++..+.+|+-
T Consensus 215 ~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 261 (263)
T 2a14_A 215 ALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 261 (263)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred ccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecC
Confidence 1455899999999999887765431 111223344667764
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.4e-14 Score=135.78 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=101.6
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccce
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+.+.++. +|||||||+|.++..+++ .+..|++ +|+++.+++.+.++ + .+.++.+|...+| ++||+
T Consensus 60 ~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g--vd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~ 132 (287)
T 1kpg_A 60 LGLQPGM--TLLDVGCGWGATMMRAVEKYDVNVVG--LTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDR 132 (287)
T ss_dssp TTCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSE
T ss_pred cCCCCcC--EEEEECCcccHHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeE
Confidence 3445555 899999999999999994 4888888 77888888888664 2 4788899987765 89999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC--------------------------------CCHHHH
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK--------------------------------KDLDDY 430 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------------------------------~~~~~~ 430 (467)
|++..+++|+.+. ....++.++.|+|||||.+++.++.... ...+.+
T Consensus 133 v~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 211 (287)
T 1kpg_A 133 IVSIGAFEHFGHE-RYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV 211 (287)
T ss_dssp EEEESCGGGTCTT-THHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred EEEeCchhhcChH-HHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHH
Confidence 9999999777532 2478999999999999999998765321 134578
Q ss_pred HHHHHHcCceeeEEEE
Q 012235 431 MYMFLQFRYKKHKWAI 446 (467)
Q Consensus 431 ~~~i~~~Gf~~l~W~~ 446 (467)
.+++++.||+.+.+..
T Consensus 212 ~~~l~~aGf~~~~~~~ 227 (287)
T 1kpg_A 212 QECASANGFTVTRVQS 227 (287)
T ss_dssp HHHHHTTTCEEEEEEE
T ss_pred HHHHHhCCcEEEEEEe
Confidence 8889999999888764
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-13 Score=129.68 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=84.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEecc-ccccccchhh
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTG-FMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~-~L~h~~~~~~ 397 (467)
+|||+|||+|.++..+++.+..+++ +|+++.+++.++++. .+.++++|+..+++ +++||+|+|.. +++|+.+...
T Consensus 43 ~vLdiG~G~G~~~~~l~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~ 119 (239)
T 3bxo_A 43 SLLDVACGTGTHLEHFTKEFGDTAG--LELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEE 119 (239)
T ss_dssp EEEEETCTTSHHHHHHHHHHSEEEE--EESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHH
T ss_pred eEEEecccCCHHHHHHHHhCCcEEE--EeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHH
Confidence 8999999999999999998888888 778899999988764 48899999998887 78999999655 8866655555
Q ss_pred HHHHHHHHHhccCCCcEEEEEec
Q 012235 398 LDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
...++.++.++|||||.+++.++
T Consensus 120 ~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 120 LGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp HHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHHHHHHHhcCCCeEEEEEec
Confidence 78999999999999999999753
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-13 Score=128.40 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=83.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCccceEEecc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+.++. +|||+|||+|.++..+++. ..+++ +|+++.+++.++++ ..+.++++|+..++++ ++||+|++..
T Consensus 31 ~~~~~--~vLdiG~G~G~~~~~l~~~-~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~ 104 (243)
T 3d2l_A 31 VEPGK--RIADIGCGTGTATLLLADH-YEVTG--VDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILC 104 (243)
T ss_dssp SCTTC--EEEEESCTTCHHHHHHTTT-SEEEE--EESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECT
T ss_pred cCCCC--eEEEecCCCCHHHHHHhhC-CeEEE--EECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeC
Confidence 33444 8999999999999999988 78888 77888888887654 2478899999888875 8999999987
Q ss_pred -ccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 388 -FMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 388 -~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+++|+.+......++.++.++|||||.+++.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 105 DSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp TGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8877756666788999999999999999984
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-13 Score=126.72 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=102.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHcC-----------CccEEEccCCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALRG-----------LIPLYVTLNQRL 373 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~rg-----------~i~~~~~d~~~L 373 (467)
+.+.+...++. +|||+|||+|.++..+++.+ ..+++ +|+++.+++.++++- .+.++++|+..+
T Consensus 21 l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (219)
T 3jwg_A 21 VVAVLKSVNAK--KVIDLGCGEGNLLSLLLKDKSFEQITG--VDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR 96 (219)
T ss_dssp HHHHHHHTTCC--EEEEETCTTCHHHHHHHTSTTCCEEEE--EESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred HHHHHhhcCCC--EEEEecCCCCHHHHHHHhcCCCCEEEE--EECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence 33444444454 89999999999999999986 57888 777888988887641 578999999888
Q ss_pred ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC-----C--------------CCHHHHH---
Q 012235 374 PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-----K--------------KDLDDYM--- 431 (467)
Q Consensus 374 pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-----~--------------~~~~~~~--- 431 (467)
++.+++||+|++..+++|+.++ .+..++.++.++|||||.+++...... . -..+++.
T Consensus 97 ~~~~~~fD~V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (219)
T 3jwg_A 97 DKRFSGYDAATVIEVIEHLDEN-RLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWA 175 (219)
T ss_dssp CGGGTTCSEEEEESCGGGCCHH-HHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHH
T ss_pred ccccCCCCEEEEHHHHHhCCHH-HHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHH
Confidence 8888999999999999777543 356899999999999997666533211 0 0334555
Q ss_pred -HHHHHcCceeeEEEEccC
Q 012235 432 -YMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 432 -~~i~~~Gf~~l~W~~~~k 449 (467)
+++++.||+..--.++..
T Consensus 176 ~~l~~~~Gf~v~~~~~g~~ 194 (219)
T 3jwg_A 176 VKVAEKYGYSVRFLQIGEI 194 (219)
T ss_dssp HHHHHHHTEEEEEEEESCC
T ss_pred HHHHHHCCcEEEEEecCCc
Confidence 678888986654444443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-14 Score=134.57 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=85.7
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCccceEEecc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ ..+.++++|+..+++++++||+|++..
T Consensus 37 ~~~~~--~vLDiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 37 KGEEP--VFLELGVGTGRIALPLIARGYRYIA--LDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVH 112 (263)
T ss_dssp SSSCC--EEEEETCTTSTTHHHHHTTTCEEEE--EESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred CCCCC--EEEEeCCcCCHHHHHHHHCCCEEEE--EECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECC
Confidence 44444 8999999999999999999989988 77889999988776 247899999999999899999999999
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+++|+.+. ..++.++.|+|||||.+++.
T Consensus 113 ~l~~~~~~---~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 113 LWHLVPDW---PKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CGGGCTTH---HHHHHHHHHHEEEEEEEEEE
T ss_pred chhhcCCH---HHHHHHHHHHCCCCcEEEEE
Confidence 99555443 68999999999999999987
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.7e-14 Score=137.18 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=104.5
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.++. +|||||||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|...+ +++|
T Consensus 66 ~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~f 138 (302)
T 3hem_A 66 DKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIG--LTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPV 138 (302)
T ss_dssp HTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEE--EECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCC
T ss_pred HHcCCCCcC--EEEEeeccCcHHHHHHHHhCCCEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCc
Confidence 334456665 8999999999999999998 888888 77888888887654 3 477889998776 7899
Q ss_pred ceEEeccccccccch------hhHHHHHHHHHhccCCCcEEEEEecccCC------------------------------
Q 012235 381 DLIHTTGFMDGWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNK------------------------------ 424 (467)
Q Consensus 381 DlVis~~~L~h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------------------------ 424 (467)
|+|++..+++|+.++ ..+..++.++.|+|||||.+++.++....
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 218 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 218 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC
Confidence 999999999887543 44578999999999999999998765422
Q ss_pred --CCHHHHHHHHHHcCceeeEEEE
Q 012235 425 --KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 425 --~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
...+.+.+.+++.||..+.+..
T Consensus 219 ~~~s~~~~~~~l~~aGf~~~~~~~ 242 (302)
T 3hem_A 219 RLPRISQVDYYSSNAGWKVERYHR 242 (302)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCHHHHHHHHHhCCcEEEEEEe
Confidence 1244788888999998877654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.4e-14 Score=143.35 Aligned_cols=121 Identities=16% Similarity=0.272 Sum_probs=101.1
Q ss_pred eEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc---------C-----CccEEEccCCCC------ccC
Q 012235 320 IGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR---------G-----LIPLYVTLNQRL------PFF 376 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r---------g-----~i~~~~~d~~~L------pf~ 376 (467)
+|||+|||+|.++..+++. +..|++ +|+++.+++.++++ | .+.++++|+..+ +++
T Consensus 86 ~VLDlGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~ 163 (383)
T 4fsd_A 86 TVLDLGCGTGRDVYLASKLVGEHGKVIG--VDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP 163 (383)
T ss_dssp EEEEESCTTSHHHHHHHHHHTTTCEEEE--EECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred EEEEecCccCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence 8999999999999999875 558888 77889999888765 3 588999999887 888
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC--------------------CHHHHHHHHHH
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--------------------DLDDYMYMFLQ 436 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------~~~~~~~~i~~ 436 (467)
+++||+|+++.+++|+.+. ..++.++.|+|||||+|++.++..... ..+++.+++++
T Consensus 164 ~~~fD~V~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 164 DSSVDIVISNCVCNLSTNK---LALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp TTCEEEEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCEEEEEEccchhcCCCH---HHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 9999999999999666554 689999999999999999987655321 23688999999
Q ss_pred cCceeeEEE
Q 012235 437 FRYKKHKWA 445 (467)
Q Consensus 437 ~Gf~~l~W~ 445 (467)
.||..+.+.
T Consensus 241 aGF~~v~~~ 249 (383)
T 4fsd_A 241 AGFRDVRLV 249 (383)
T ss_dssp TTCCCEEEE
T ss_pred CCCceEEEE
Confidence 999877554
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.9e-14 Score=133.54 Aligned_cols=95 Identities=18% Similarity=0.117 Sum_probs=83.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
+|||+|||+|.++..+++. +..+++ +|+++.+++.+.++. .+.++++|+..++ ++++||+|+++.+++|+.+
T Consensus 36 ~vLdiG~G~G~~~~~l~~~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~-- 110 (259)
T 2p35_A 36 NGYDLGCGPGNSTELLTDRYGVNVITG--IDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVPD-- 110 (259)
T ss_dssp SEEEETCTTTHHHHHHHHHHCTTSEEE--EESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTT--
T ss_pred EEEEecCcCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCCC--
Confidence 8999999999999999988 788998 778899999988763 4889999999988 7899999999999955544
Q ss_pred hHHHHHHHHHhccCCCcEEEEEec
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
...++.++.++|||||.+++..+
T Consensus 111 -~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 111 -HLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp -HHHHHHHHGGGEEEEEEEEEEEE
T ss_pred -HHHHHHHHHHhcCCCeEEEEEeC
Confidence 36899999999999999999865
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-14 Score=136.68 Aligned_cols=132 Identities=10% Similarity=0.053 Sum_probs=103.0
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sF 380 (467)
.+..+.++. +|||||||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++++|+..+++ +++|
T Consensus 16 ~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~f 90 (284)
T 3gu3_A 16 TVWKITKPV--HIVDYGCGYGYLGLVLMPLLPEGSKYTG--IDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKY 90 (284)
T ss_dssp TTSCCCSCC--EEEEETCTTTHHHHHHTTTSCTTCEEEE--EESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCE
T ss_pred HHhccCCCC--eEEEecCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCe
Confidence 333455555 8999999999999999987 578888 77788888877654 2 37899999999888 5799
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc---------CCC--------------------------
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC---------NKK-------------------------- 425 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~---------~~~-------------------------- 425 (467)
|+|++..+++|+.+. ..++.++.|+|||||++++.++.. ...
T Consensus 91 D~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (284)
T 3gu3_A 91 DIAICHAFLLHMTTP---ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDG 167 (284)
T ss_dssp EEEEEESCGGGCSSH---HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCT
T ss_pred eEEEECChhhcCCCH---HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccc
Confidence 999999999777655 689999999999999999987651 000
Q ss_pred -CHHHHHHHHHHcCceeeEEEEcc
Q 012235 426 -DLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 426 -~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
....+.+++++.||..+......
T Consensus 168 ~~~~~l~~~l~~aGF~~v~~~~~~ 191 (284)
T 3gu3_A 168 NIGMKIPIYLSELGVKNIECRVSD 191 (284)
T ss_dssp TGGGTHHHHHHHTTCEEEEEEECC
T ss_pred cHHHHHHHHHHHcCCCeEEEEEcC
Confidence 11256778899999888765443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-14 Score=134.77 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=101.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||||||+|.++..+++. +..+++ +|+++.+++.++++ + .+.++.+|...+++++++||+|+
T Consensus 35 ~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 110 (276)
T 3mgg_A 35 YPPGA--KVLEAGCGIGAQTVILAKNNPDAEITS--IDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIF 110 (276)
T ss_dssp CCTTC--EEEETTCTTSHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEE
T ss_pred CCCCC--eEEEecCCCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEE
Confidence 44555 8999999999999999988 678888 77788888877654 2 37889999999999999999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC------C----------------------CCHHHHHHHHHH
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN------K----------------------KDLDDYMYMFLQ 436 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~------~----------------------~~~~~~~~~i~~ 436 (467)
+..+++|+.+. ..++.++.++|||||++++.++... . .....+.+++++
T Consensus 111 ~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 187 (276)
T 3mgg_A 111 VCFVLEHLQSP---EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQE 187 (276)
T ss_dssp EESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHH
T ss_pred EechhhhcCCH---HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 99999777665 5899999999999999999764221 0 012367778999
Q ss_pred cCceeeEEE
Q 012235 437 FRYKKHKWA 445 (467)
Q Consensus 437 ~Gf~~l~W~ 445 (467)
.||+.+...
T Consensus 188 aGf~~v~~~ 196 (276)
T 3mgg_A 188 SGFEKIRVE 196 (276)
T ss_dssp TTCEEEEEE
T ss_pred CCCCeEEEe
Confidence 999877654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=132.50 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=107.5
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc---CC--------------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR---GL-------------------------------- 362 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r---g~-------------------------------- 362 (467)
.+|||+|||+|.++..+++.+. .|++ +|+++.+++.++++ ..
T Consensus 58 ~~vLDlGcG~G~~~~~l~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (265)
T 2i62_A 58 ELLIDIGSGPTIYQLLSACESFTEIIV--SDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA 135 (265)
T ss_dssp EEEEEESCTTCCGGGTTGGGTEEEEEE--EESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred CEEEEECCCccHHHHHHhhcccCeEEE--ecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence 4899999999999999998887 7888 77888888887653 11
Q ss_pred c-cEEEccCCCCc-cCC---CccceEEeccccccccch-hhHHHHHHHHHhccCCCcEEEEEeccc-------------C
Q 012235 363 I-PLYVTLNQRLP-FFD---NTMDLIHTTGFMDGWLDM-LLLDFILFDWDRILRPGGLLWIDRFFC-------------N 423 (467)
Q Consensus 363 i-~~~~~d~~~Lp-f~d---~sFDlVis~~~L~h~~~~-~~l~~~L~el~RvLKPGG~LiI~~~~~-------------~ 423 (467)
+ .++++|+...+ +++ ++||+|++..++++..+. .....++.++.|+|||||+|++.+... .
T Consensus 136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 215 (265)
T 2i62_A 136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSL 215 (265)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccccc
Confidence 5 78888887764 355 899999999999643321 235789999999999999999976432 1
Q ss_pred CCCHHHHHHHHHHcCceeeEEEEccCC------CCceEEEEEeecCCCC
Q 012235 424 KKDLDDYMYMFLQFRYKKHKWAISPKS------KDEVYLSALLEKPPRA 466 (467)
Q Consensus 424 ~~~~~~~~~~i~~~Gf~~l~W~~~~k~------~devyl~avlqKP~~~ 466 (467)
.-..+.+.+++++.||..+.+...... .....+..+.+|+.++
T Consensus 216 ~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~ 264 (265)
T 2i62_A 216 PLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGRS 264 (265)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC--
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecccccC
Confidence 124558999999999999988765421 1122444567888654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=129.40 Aligned_cols=136 Identities=12% Similarity=0.014 Sum_probs=101.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHcC-----------CccEEEccCCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALRG-----------LIPLYVTLNQRL 373 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~rg-----------~i~~~~~d~~~L 373 (467)
+.+.+...++. +|||+|||+|.++..+++++ ..+++ +|+++.+++.++++- .+.++++|+..+
T Consensus 21 l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 21 VVAALKQSNAR--RVIDLGCGQGNLLKILLKDSFFEQITG--VDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHHHHHHTTCC--EEEEETCTTCHHHHHHHHCTTCSEEEE--EESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred HHHHHHhcCCC--EEEEeCCCCCHHHHHHHhhCCCCEEEE--EECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence 34444444555 89999999999999999985 57888 777888988887641 478999998888
Q ss_pred ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC--------------C-----CCHHHHH---
Q 012235 374 PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN--------------K-----KDLDDYM--- 431 (467)
Q Consensus 374 pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~--------------~-----~~~~~~~--- 431 (467)
+..+++||+|++..+++|+.++ .+..++.++.++|||||.+++...... . -..+++.
T Consensus 97 ~~~~~~fD~v~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (217)
T 3jwh_A 97 DKRFHGYDAATVIEVIEHLDLS-RLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWA 175 (217)
T ss_dssp CGGGCSCSEEEEESCGGGCCHH-HHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHH
T ss_pred cccCCCcCEEeeHHHHHcCCHH-HHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHH
Confidence 8878999999999999766433 457899999999999998777543210 0 1334555
Q ss_pred -HHHHHcCceeeEEEEc
Q 012235 432 -YMFLQFRYKKHKWAIS 447 (467)
Q Consensus 432 -~~i~~~Gf~~l~W~~~ 447 (467)
+++++.||......++
T Consensus 176 ~~~~~~~Gf~v~~~~~g 192 (217)
T 3jwh_A 176 NKITERFAYNVQFQPIG 192 (217)
T ss_dssp HHHHHHSSEEEEECCCS
T ss_pred HHHHHHcCceEEEEecC
Confidence 7788888866544333
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-13 Score=123.28 Aligned_cols=141 Identities=11% Similarity=0.033 Sum_probs=94.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc-cCCCccceEEe
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP-FFDNTMDLIHT 385 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp-f~d~sFDlVis 385 (467)
+.++. +|||+|||+|.++..+++++.+|++ +|+++.|++.++++ + .+.+++++...++ +.+++||+|++
T Consensus 20 ~~~~~--~vLDiGcG~G~~~~~la~~~~~v~~--vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~ 95 (185)
T 3mti_A 20 LDDES--IVVDATMGNGNDTAFLAGLSKKVYA--FDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIF 95 (185)
T ss_dssp CCTTC--EEEESCCTTSHHHHHHHTTSSEEEE--EESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred CCCCC--EEEEEcCCCCHHHHHHHHhCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence 44555 8999999999999999999999999 77888888887653 3 4778887777754 45789999998
Q ss_pred ccccccc------cchhhHHHHHHHHHhccCCCcEEEEEecccCCCC---HHHHHHHHHH---cCceeeEEEEccCCCCc
Q 012235 386 TGFMDGW------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKD---LDDYMYMFLQ---FRYKKHKWAISPKSKDE 453 (467)
Q Consensus 386 ~~~L~h~------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~---~~~~~~~i~~---~Gf~~l~W~~~~k~~de 453 (467)
+....+. ........++.++.|+|||||.+++..+...... .+.+.+.+.. .+|...++......+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 175 (185)
T 3mti_A 96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTP 175 (185)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCC
T ss_pred eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCC
Confidence 7433222 0122346789999999999999999877654321 2244444444 45777777766543333
Q ss_pred eEEE
Q 012235 454 VYLS 457 (467)
Q Consensus 454 vyl~ 457 (467)
-++.
T Consensus 176 ~~~~ 179 (185)
T 3mti_A 176 PFLV 179 (185)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 3443
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=126.25 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=102.5
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEe
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.+..+....++. +|||+|||+|.++..++ ..++++|++.. .+.++++|+..+++++++||+|++
T Consensus 58 ~~~~l~~~~~~~--~vLDiG~G~G~~~~~l~---~~v~~~D~s~~-----------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 58 IARDLRQRPASL--VVADFGCGDCRLASSIR---NPVHCFDLASL-----------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHTSCTTS--CEEEETCTTCHHHHHCC---SCEEEEESSCS-----------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHhccCCCC--eEEEECCcCCHHHHHhh---ccEEEEeCCCC-----------CceEEEeccccCCCCCCCEeEEEE
Confidence 333333344444 89999999999999884 67888666543 478999999999998999999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecC
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKP 463 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP 463 (467)
..++ |+.+ ...++.++.++|+|||.+++.++.......+.+.+++++.||..+...... ..+...+++|+
T Consensus 122 ~~~l-~~~~---~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~~k~ 191 (215)
T 2zfu_A 122 CLSL-MGTN---IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTN----SHFFLFDFQKT 191 (215)
T ss_dssp ESCC-CSSC---HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCS----TTCEEEEEEEC
T ss_pred ehhc-cccC---HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCC----CeEEEEEEEec
Confidence 9999 6543 368999999999999999998877655567799999999999887643321 12334456665
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=126.08 Aligned_cols=123 Identities=13% Similarity=0.172 Sum_probs=101.1
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC--CccCCCccceEEeccccccccchh
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR--LPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~--Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
.+|||+|||+|.++..+++.+..+++ +|+++.+++.+.++. ..++.+|+.. +++++++||+|++..+++|+.+.
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~~~~~--~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~- 109 (230)
T 3cc8_A 34 KEVLDIGCSSGALGAAIKENGTRVSG--IEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP- 109 (230)
T ss_dssp SEEEEETCTTSHHHHHHHTTTCEEEE--EESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CcEEEeCCCCCHHHHHHHhcCCeEEE--EeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH-
Confidence 38999999999999999998888888 777888888887654 4788888776 66778999999999999777665
Q ss_pred hHHHHHHHHHhccCCCcEEEEEecccC---------------------------CCCHHHHHHHHHHcCceeeEEEEc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFCN---------------------------KKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~~---------------------------~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
..++.++.++|+|||.+++..+... .-..+++.+++++.||+.+.+...
T Consensus 110 --~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 110 --WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp --HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEec
Confidence 5899999999999999999764311 013568999999999988877643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=130.34 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=99.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhHH
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLD 399 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~ 399 (467)
+|||+|||+|.++..+++. ++ +|+++.+++.+.++ .+.++.+++..+++++++||+|++..+++|+.+. .
T Consensus 50 ~vLDiG~G~G~~~~~l~~~----~~--vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---~ 119 (219)
T 1vlm_A 50 RGVEIGVGTGRFAVPLKIK----IG--VEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP---E 119 (219)
T ss_dssp CEEEETCTTSTTHHHHTCC----EE--EESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH---H
T ss_pred cEEEeCCCCCHHHHHHHHH----hc--cCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH---H
Confidence 8999999999999999876 44 88899999999887 5788999999999888999999999999777554 6
Q ss_pred HHHHHHHhccCCCcEEEEEecccCC---------------------CCHHHHHHHHHHcCceeeEEEEc
Q 012235 400 FILFDWDRILRPGGLLWIDRFFCNK---------------------KDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 400 ~~L~el~RvLKPGG~LiI~~~~~~~---------------------~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
.++.++.++|+|||.+++..+.... -..+.+.+++++.||+.+.....
T Consensus 120 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 120 RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 8999999999999999998654311 14568899999999998876544
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=132.78 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=97.9
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceE
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
+.+...++. +|||+|||+|.++..+++.|..|++ +|+++.+++.++++ + .+.++++|+..+++ +++||+|
T Consensus 114 ~~~~~~~~~--~vLD~GcG~G~~~~~l~~~g~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i 188 (286)
T 3m70_A 114 DAAKIISPC--KVLDLGCGQGRNSLYLSLLGYDVTS--WDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFI 188 (286)
T ss_dssp HHHHHSCSC--EEEEESCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEE
T ss_pred HHhhccCCC--cEEEECCCCCHHHHHHHHCCCeEEE--EECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEE
Confidence 344444454 8999999999999999999999998 67778888777643 3 47889999988887 8899999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-----------CHHHHHHHHHHcCceeeEEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-----------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-----------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+++.+++|+ +......++.++.++|||||.+++.......+ ..+++.+.+.. |..+.+.
T Consensus 189 ~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 189 VSTVVFMFL-NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp EECSSGGGS-CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred EEccchhhC-CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 999999555 44446789999999999999988865543221 13356666654 6666664
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-13 Score=124.37 Aligned_cols=138 Identities=12% Similarity=0.018 Sum_probs=103.8
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
+|||+|||+|.++..+++.+..+++ +|+++.+++.++++ + .+.++++|+..+++++++||+|+++.. |+ .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~-~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTA--VDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC--HL-P 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEE--ECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC--CC-C
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEE--EECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhh--cC-C
Confidence 7999999999999999999998988 77888888877654 3 478889999999888899999999643 55 3
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccCC--------------CCHHHHHHHHHHcCceeeEEEEccC----CCC----
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCNK--------------KDLDDYMYMFLQFRYKKHKWAISPK----SKD---- 452 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------------~~~~~~~~~i~~~Gf~~l~W~~~~k----~~d---- 452 (467)
......++.++.++|||||.+++.++.... -+.+++.++++ ||+.+....... +..
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~~~g~~~~~~ 184 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNLDEGAYHQGK 184 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEECSCSSSSCCE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeecCCCCCcccH
Confidence 334678999999999999999998754321 13457777777 898776654332 111
Q ss_pred ceEEEEEeecCC
Q 012235 453 EVYLSALLEKPP 464 (467)
Q Consensus 453 evyl~avlqKP~ 464 (467)
..++....+|+.
T Consensus 185 ~~~i~~~~~~~~ 196 (202)
T 2kw5_A 185 AALIQLLGQKLE 196 (202)
T ss_dssp EEEEEEEECCCS
T ss_pred HHHHHHHHHhhh
Confidence 236666566654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-13 Score=135.25 Aligned_cols=127 Identities=15% Similarity=0.107 Sum_probs=101.7
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceE
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
.+.++. +|||||||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|...+| ++||+|
T Consensus 87 ~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v 159 (318)
T 2fk8_A 87 DLKPGM--TLLDIGCGWGTTMRRAVERFDVNVIG--LTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRI 159 (318)
T ss_dssp CCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCCcC--EEEEEcccchHHHHHHHHHCCCEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEE
Confidence 344555 8999999999999999988 888988 77888888888764 2 3788889987774 789999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC--------------------------------CCHHHHH
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK--------------------------------KDLDDYM 431 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------------------------------~~~~~~~ 431 (467)
++..+++|+.. .....++.++.++|||||.+++.++.... ...+.+.
T Consensus 160 ~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 238 (318)
T 2fk8_A 160 VSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMV 238 (318)
T ss_dssp EEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHH
T ss_pred EEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHH
Confidence 99999977643 23578999999999999999998765432 1345788
Q ss_pred HHHHHcCceeeEEEE
Q 012235 432 YMFLQFRYKKHKWAI 446 (467)
Q Consensus 432 ~~i~~~Gf~~l~W~~ 446 (467)
+++++.||+.+.+..
T Consensus 239 ~~l~~aGf~~~~~~~ 253 (318)
T 2fk8_A 239 EHGEKAGFTVPEPLS 253 (318)
T ss_dssp HHHHHTTCBCCCCEE
T ss_pred HHHHhCCCEEEEEEe
Confidence 889999998887654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-14 Score=136.14 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=90.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCc-
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLP- 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lp- 374 (467)
.+...+...++. +|||||||+|.++..+++.+..|++ +|+++.+++.++++ ..+.+..++...++
T Consensus 48 ~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 123 (293)
T 3thr_A 48 WLLGLLRQHGCH--RVLDVACGTGVDSIMLVEEGFSVTS--VDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 123 (293)
T ss_dssp HHHHHHHHTTCC--EEEETTCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHhcccCCC--EEEEecCCCCHHHHHHHHCCCeEEE--EECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence 344555555555 8999999999999999999999988 77888998888653 12567888988888
Q ss_pred --cCCCccceEEec-cccccccc----hhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 375 --FFDNTMDLIHTT-GFMDGWLD----MLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 375 --f~d~sFDlVis~-~~L~h~~~----~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++++||+|++. .+++|+.+ ......++.++.|+|||||++++..
T Consensus 124 ~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 124 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp HSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 788999999998 89988877 3445799999999999999999875
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=131.45 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=102.7
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc-CCCccceE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF-FDNTMDLI 383 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf-~d~sFDlV 383 (467)
+.++. +|||+|||+|.++..+++.+. .+++ +|+++.+++.+.++ + .+.++++|+..+++ ++++||+|
T Consensus 62 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 62 TKRGD--SVLDLGCGKGGDLLKYERAGIGEYYG--VDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CCTTC--EEEEETCTTTTTHHHHHHHTCSEEEE--EESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCC--eEEEECCCCCHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEE
Confidence 34554 899999999999999988865 8888 77888888887654 2 26889999999888 68899999
Q ss_pred Eeccccccc-cchhhHHHHHHHHHhccCCCcEEEEEecccC---------------------------C-----------
Q 012235 384 HTTGFMDGW-LDMLLLDFILFDWDRILRPGGLLWIDRFFCN---------------------------K----------- 424 (467)
Q Consensus 384 is~~~L~h~-~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~---------------------------~----------- 424 (467)
++..+++|. ........++.++.++|||||.+++..+... .
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 999999442 3444467899999999999999998764310 0
Q ss_pred ----------CCHHHHHHHHHHcCceeeEEEE
Q 012235 425 ----------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 425 ----------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
-..+++.+++++.||+.+.+..
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~ 249 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKG 249 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecC
Confidence 0346899999999999888764
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=131.07 Aligned_cols=98 Identities=21% Similarity=0.309 Sum_probs=86.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhHH
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLD 399 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~ 399 (467)
+|||+|||+|.++..+++.+..+++ +|+++.+++.++++....++++|+..+++++++||+|++..++.|+.++ ..
T Consensus 57 ~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~--~~ 132 (260)
T 2avn_A 57 RVLDLGGGTGKWSLFLQERGFEVVL--VDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN--KD 132 (260)
T ss_dssp EEEEETCTTCHHHHHHHTTTCEEEE--EESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC--HH
T ss_pred eEEEeCCCcCHHHHHHHHcCCeEEE--EeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc--HH
Confidence 8999999999999999999999988 7788999999887754348899999999989999999999888788655 47
Q ss_pred HHHHHHHhccCCCcEEEEEecc
Q 012235 400 FILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 400 ~~L~el~RvLKPGG~LiI~~~~ 421 (467)
.++.++.++|||||.+++..+.
T Consensus 133 ~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 133 KAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHcCCCeEEEEEeCC
Confidence 8999999999999999997654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-14 Score=143.18 Aligned_cols=128 Identities=11% Similarity=0.147 Sum_probs=102.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEE-----EccCCCCccCCCccceEEecc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLY-----VTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~-----~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+.++. +|||||||+|.++..+++++..|+| +|+++.+++.+++++. +.. .++...+++++++||+|++..
T Consensus 105 ~~~~~--~VLDiGcG~G~~~~~l~~~g~~v~g--vD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~fD~I~~~~ 179 (416)
T 4e2x_A 105 TGPDP--FIVEIGCNDGIMLRTIQEAGVRHLG--FEPSSGVAAKAREKGI-RVRTDFFEKATADDVRRTEGPANVIYAAN 179 (416)
T ss_dssp CSSSC--EEEEETCTTTTTHHHHHHTTCEEEE--ECCCHHHHHHHHTTTC-CEECSCCSHHHHHHHHHHHCCEEEEEEES
T ss_pred CCCCC--EEEEecCCCCHHHHHHHHcCCcEEE--ECCCHHHHHHHHHcCC-CcceeeechhhHhhcccCCCCEEEEEECC
Confidence 34444 8999999999999999999999998 8889999999988753 222 345566777789999999999
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEeccc-------------CC----CCHHHHHHHHHHcCceeeEEEEcc
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC-------------NK----KDLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~-------------~~----~~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
+++|+.+. ..++.++.|+|||||++++..+.. .. ...+.+.+++++.||+.+.....+
T Consensus 180 vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 180 TLCHIPYV---QSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp CGGGCTTH---HHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred hHHhcCCH---HHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEcc
Confidence 99888654 689999999999999999976431 01 134589999999999988776543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=118.20 Aligned_cols=130 Identities=16% Similarity=0.096 Sum_probs=99.4
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccccccc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
.++. +|||+|||+|.++..+++++ .|++ +|+++.|++. ...+.++++|+.. ++++++||+|+++..+ ++.
T Consensus 22 ~~~~--~vLD~GcG~G~~~~~l~~~~-~v~g--vD~s~~~~~~---~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~-~~~ 91 (170)
T 3q87_B 22 LEMK--IVLDLGTSTGVITEQLRKRN-TVVS--TDLNIRALES---HRGGNLVRADLLC-SINQESVDVVVFNPPY-VPD 91 (170)
T ss_dssp CCSC--EEEEETCTTCHHHHHHTTTS-EEEE--EESCHHHHHT---CSSSCEEECSTTT-TBCGGGCSEEEECCCC-BTT
T ss_pred CCCC--eEEEeccCccHHHHHHHhcC-cEEE--EECCHHHHhc---ccCCeEEECChhh-hcccCCCCEEEECCCC-ccC
Confidence 4444 89999999999999999999 8888 7778888877 4458899999877 6667999999999887 432
Q ss_pred chh-------hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEE
Q 012235 394 DML-------LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYL 456 (467)
Q Consensus 394 ~~~-------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl 456 (467)
++. ....++.++.+.| |||.+++..... ...+.+.+++++.||+...........+.+|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~ 158 (170)
T 3q87_B 92 TDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--NRPKEVLARLEERGYGTRILKVRKILGETVYI 158 (170)
T ss_dssp CCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--GCHHHHHHHHHHTTCEEEEEEEEECSSSEEEE
T ss_pred CccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--CCHHHHHHHHHHCCCcEEEEEeeccCCceEEE
Confidence 221 1246888999999 999999976443 34557889999999988776655444454444
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-13 Score=130.51 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=93.0
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc---------------------C---------------C
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR---------------------G---------------L 362 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r---------------------g---------------~ 362 (467)
+|||||||+|.++..++.. +..|+| +|+|+.|++.++++ + .
T Consensus 74 ~vLDiGcG~G~~~~l~~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 151 (289)
T 2g72_A 74 TLIDIGSGPTVYQLLSACSHFEDITM--TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 151 (289)
T ss_dssp EEEEETCTTCCGGGTTGGGGCSEEEE--ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred eEEEECCCcChHHHHhhccCCCeEEE--eCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhh
Confidence 8999999999965544443 678888 78899999877652 1 0
Q ss_pred ccEEEccCCC-Ccc-----CCCccceEEeccccccccch-hhHHHHHHHHHhccCCCcEEEEEeccc-------------
Q 012235 363 IPLYVTLNQR-LPF-----FDNTMDLIHTTGFMDGWLDM-LLLDFILFDWDRILRPGGLLWIDRFFC------------- 422 (467)
Q Consensus 363 i~~~~~d~~~-Lpf-----~d~sFDlVis~~~L~h~~~~-~~l~~~L~el~RvLKPGG~LiI~~~~~------------- 422 (467)
+.++.+|+.. +|+ ++++||+|+++.+++|.... .....++.++.|+|||||+|++.....
T Consensus 152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~ 231 (289)
T 2g72_A 152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV 231 (289)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEEC
T ss_pred ceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeee
Confidence 2355568776 654 35679999999999553321 235789999999999999999974321
Q ss_pred CCCCHHHHHHHHHHcCceeeEEEEcc
Q 012235 423 NKKDLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 423 ~~~~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
..-+.+.+.+++++.||+.+.+....
T Consensus 232 ~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 232 VPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 11245689999999999988876544
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-13 Score=123.77 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=84.0
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
.+|||+|||+|.++..+ +. ++++ +|+++.+++.++++. .+.++++|...+|+++++||+|++..+++|+.+.
T Consensus 38 ~~vLdiG~G~G~~~~~l---~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 111 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL---PYPQKVG--VEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDV- 111 (211)
T ss_dssp SEEEEETCTTCHHHHHC---CCSEEEE--ECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCH-
T ss_pred CeEEEECCCCCHhHHhC---CCCeEEE--EeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCH-
Confidence 38999999999999988 66 8888 788899999988773 5789999999999989999999999999777654
Q ss_pred hHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..++.++.|+|||||.+++.++..
T Consensus 112 --~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 112 --ERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp --HHHHHHHHHHEEEEEEEEEEEECT
T ss_pred --HHHHHHHHHHcCCCCEEEEEecCC
Confidence 689999999999999999987654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=132.86 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=81.8
Q ss_pred ceEEEECCCccHHHHHHh---hCCCEEEEEecCCCHHHHHHHHHc--------CCccEEEccCCCCccCC------Cccc
Q 012235 319 RIGLDFGVGTGTFAARMR---EQNVTIVSTALNLGAPFNEMIALR--------GLIPLYVTLNQRLPFFD------NTMD 381 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La---~~g~~V~gvdiDiS~~~l~~a~~r--------g~i~~~~~d~~~Lpf~d------~sFD 381 (467)
.+|||||||+|.++..++ ..+..|++ +|+++.+++.++++ ..+.++++|+..+++.+ ++||
T Consensus 38 ~~vLDiGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 38 KLLVDVGCGPGTATLQMAQELKPFEQIIG--SDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp SEEEEETCTTTHHHHHHHHHSSCCSEEEE--EESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCEEEE--EeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 389999999999999999 45788888 77888888888653 24889999999999877 8999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+++.+++|+ + ...++.++.|+|||||.|++.+
T Consensus 116 ~V~~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 116 MITAVECAHWF-D---FEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp EEEEESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeHhhHHHHh-C---HHHHHHHHHHhcCCCcEEEEEe
Confidence 99999999665 3 4789999999999999999843
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-13 Score=134.42 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=96.0
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc------------------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR------------------------------------ 360 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r------------------------------------ 360 (467)
.+|||||||+|.++..++++ +..|+| +|+++.+++.++++
T Consensus 48 ~~VLDiGCG~G~~~~~la~~~~~~~v~g--vDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 48 RDVLDLGCNVGHLTLSIACKWGPSRMVG--LDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp SEEEEESCTTCHHHHHHHHHTCCSEEEE--EESCHHHHHHHHHTC-----------------------------------
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 38999999999999999988 678888 77778888888764
Q ss_pred ----------------------------CCccEEEccCCCCc-----cCCCccceEEecccccccc---chhhHHHHHHH
Q 012235 361 ----------------------------GLIPLYVTLNQRLP-----FFDNTMDLIHTTGFMDGWL---DMLLLDFILFD 404 (467)
Q Consensus 361 ----------------------------g~i~~~~~d~~~Lp-----f~d~sFDlVis~~~L~h~~---~~~~l~~~L~e 404 (467)
..+.++++|....+ +.+++||+|+|..++.|+. .+..+..++.+
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 24778888876544 5678999999999984432 44457899999
Q ss_pred HHhccCCCcEEEEEecccC-----C--------------CCHHHHHHHHHH--cCceeeEEEEc
Q 012235 405 WDRILRPGGLLWIDRFFCN-----K--------------KDLDDYMYMFLQ--FRYKKHKWAIS 447 (467)
Q Consensus 405 l~RvLKPGG~LiI~~~~~~-----~--------------~~~~~~~~~i~~--~Gf~~l~W~~~ 447 (467)
+.++|||||+|++....+. . -.++.+.+++.. .||+.+.....
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 9999999999999643210 0 023467778887 99987765433
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.9e-13 Score=123.48 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=82.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
+|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ ..+.++++|+..+++++++||+|+++.+++ +..
T Consensus 41 ~vLDlG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~-~~~ 117 (227)
T 1ve3_A 41 KVLDLACGVGGFSFLLEDYGFEVVG--VDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV-HFE 117 (227)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG-GCC
T ss_pred eEEEEeccCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH-hCC
Confidence 8999999999999999999888888 67778888877654 348899999999888889999999999852 223
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
......++.++.++|||||.+++.++.
T Consensus 118 ~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 118 PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 333578999999999999999987653
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=126.77 Aligned_cols=132 Identities=12% Similarity=0.139 Sum_probs=96.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHH------HHHHHHHc-------CCccEEEcc-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAP------FNEMIALR-------GLIPLYVTL- 369 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~------~l~~a~~r-------g~i~~~~~d- 369 (467)
+.+.+.+.++. +|||||||+|.++..++++ | ..|+++| +++. +++.+.++ ..+.++.+|
T Consensus 35 l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD--~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 35 IAEAWQVKPGE--KILEIGCGQGDLSAVLADQVGSSGHVTGID--IASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHTCCTTC--EEEEESCTTSHHHHHHHHHHCTTCEEEEEC--SSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEE--CCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 33445566666 8999999999999999987 4 7888855 4443 66666543 237788887
Q ss_pred --CCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-----------------------
Q 012235 370 --NQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----------------------- 424 (467)
Q Consensus 370 --~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----------------------- 424 (467)
...+|+++++||+|++..+++|+.+. ..++..+.++++|||.+++.++....
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~---~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASA---NALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAP 187 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCH---HHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSC
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCH---HHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccc
Confidence 56677888999999999999777766 35666677777779999997654321
Q ss_pred ---------CCHHHHHHHHHHcCceeeEEE
Q 012235 425 ---------KDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 425 ---------~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
...+.+.+++++.||+.+...
T Consensus 188 ~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~ 217 (275)
T 3bkx_A 188 SDVANIRTLITPDTLAQIAHDNTWTYTAGT 217 (275)
T ss_dssp CTTCSCCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred cccccccccCCHHHHHHHHHHCCCeeEEEE
Confidence 123467778888888877654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-13 Score=125.93 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=94.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccC-CCCccC-CCccceEEecccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLN-QRLPFF-DNTMDLIHTTGFM 389 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~-~~Lpf~-d~sFDlVis~~~L 389 (467)
+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.+.++. .+.++++|. ..+|++ +++||+|+++...
T Consensus 46 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~~ 121 (226)
T 3m33_A 46 LTPQT--RVLEAGCGHGPDAARFGPQAARWAA--YDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGP 121 (226)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHGGGSSEEEE--EESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEESCC
T ss_pred CCCCC--eEEEeCCCCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCCCH
Confidence 34454 8999999999999999999999998 778899999998774 488999998 678888 8999999998322
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
..++.++.++|||||.++... .....+.+.+.+.+.||......
T Consensus 122 ---------~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 122 ---------TSVILRLPELAAPDAHFLYVG---PRLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp ---------SGGGGGHHHHEEEEEEEEEEE---SSSCCTHHHHHHHHTTCEEEEEE
T ss_pred ---------HHHHHHHHHHcCCCcEEEEeC---CcCCHHHHHHHHHHCCCeEEEEE
Confidence 468999999999999998322 12233478889999999876554
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-13 Score=129.79 Aligned_cols=125 Identities=15% Similarity=0.069 Sum_probs=88.6
Q ss_pred ceEEEECCCccHHHHH----HhhC--CCEEEEEecCCCHHHHHHHHHc-----C--CccE--EEccCCCCc------cCC
Q 012235 319 RIGLDFGVGTGTFAAR----MREQ--NVTIVSTALNLGAPFNEMIALR-----G--LIPL--YVTLNQRLP------FFD 377 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~----La~~--g~~V~gvdiDiS~~~l~~a~~r-----g--~i~~--~~~d~~~Lp------f~d 377 (467)
.+|||||||+|.++.. ++.+ ++.+..+.+|.|+.|++.++++ + .+.+ ..++++.++ +++
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL 133 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCC
Confidence 3899999999976643 3332 4544334489999999988754 2 2233 344554443 568
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC---------------------CCCHHHHHHHHHH
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN---------------------KKDLDDYMYMFLQ 436 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~---------------------~~~~~~~~~~i~~ 436 (467)
++||+|++..+++|+.+. ..++.++.|+|||||.+++...... ....+++.+++++
T Consensus 134 ~~fD~V~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (292)
T 2aot_A 134 QKWDFIHMIQMLYYVKDI---PATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN 210 (292)
T ss_dssp CCEEEEEEESCGGGCSCH---HHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHH
T ss_pred CceeEEEEeeeeeecCCH---HHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHH
Confidence 899999999999666655 6899999999999999999753321 1134578889999
Q ss_pred cCceeeEEEE
Q 012235 437 FRYKKHKWAI 446 (467)
Q Consensus 437 ~Gf~~l~W~~ 446 (467)
.||+......
T Consensus 211 aGf~~~~~~~ 220 (292)
T 2aot_A 211 LGLKYECYDL 220 (292)
T ss_dssp HTCCEEEEEE
T ss_pred CCCceEEEEe
Confidence 9998776433
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-13 Score=123.33 Aligned_cols=105 Identities=17% Similarity=0.251 Sum_probs=87.0
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccceEEeccc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
.++. +|||+|||+|.++..+++.+. .+++ +|+++.+++.++++ ..+.++++|+..+++++++||+|++..+
T Consensus 41 ~~~~--~vLdiGcG~G~~~~~l~~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 116 (215)
T 2pxx_A 41 RPED--RILVLGCGNSALSYELFLGGFPNVTS--VDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGT 116 (215)
T ss_dssp CTTC--CEEEETCTTCSHHHHHHHTTCCCEEE--EESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESH
T ss_pred CCCC--eEEEECCCCcHHHHHHHHcCCCcEEE--EeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcc
Confidence 4444 899999999999999999876 7888 77888998888765 2478999999999988899999999988
Q ss_pred ccccc------------chhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 389 MDGWL------------DMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 389 L~h~~------------~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+.++. .......++.++.|+|||||.+++.++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 85553 12335789999999999999999987643
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.1e-13 Score=126.55 Aligned_cols=125 Identities=16% Similarity=0.144 Sum_probs=92.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-----CccEEEccCCCC--ccCCCccceEEe-cccc-
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-----LIPLYVTLNQRL--PFFDNTMDLIHT-TGFM- 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~d~~~L--pf~d~sFDlVis-~~~L- 389 (467)
+|||||||+|.++..+++.+. .|++ +|+++.|++.++++. .+.++++|+..+ ++++++||+|++ .+.+
T Consensus 63 ~vLDiGcGtG~~~~~l~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~ 140 (236)
T 1zx0_A 63 RVLEVGFGMAIAASKVQEAPIDEHWI--IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS 140 (236)
T ss_dssp EEEEECCTTSHHHHHHHTSCEEEEEE--EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred eEEEEeccCCHHHHHHHhcCCCeEEE--EcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcccc
Confidence 899999999999999988755 6777 888899999887642 277889998888 888999999999 5554
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------CC-----HHHHHHHHHHcCce--eeEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------KD-----LDDYMYMFLQFRYK--KHKWAI 446 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------~~-----~~~~~~~i~~~Gf~--~l~W~~ 446 (467)
.+.......+.++.++.|+|||||+|++.++.... .. .+.....+...||. .+.+.+
T Consensus 141 ~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~i~~~~ 211 (236)
T 1zx0_A 141 EETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIRTEV 211 (236)
T ss_dssp GGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCCCceeEEE
Confidence 12222223457899999999999999986543210 11 12445678889997 355543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-12 Score=118.37 Aligned_cols=128 Identities=14% Similarity=0.023 Sum_probs=98.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~ 378 (467)
.+...+.+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++.+|+........
T Consensus 46 ~~l~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~~v~~--vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 46 LTLAALAPRRGE--LLWDIGGGSGSVSVEWCLAGGRAIT--IEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHCCCTTC--EEEEETCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHhcCCCCCC--EEEEecCCCCHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 344556666666 8999999999999999999889998 77778888877654 2 47788999887433346
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
.||+|++...+ . .+ ++.++.++|||||.+++..... +....+.+.+++.|++...+...
T Consensus 122 ~~D~v~~~~~~-----~--~~-~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~~g~~i~~i~~~ 180 (204)
T 3njr_A 122 LPEAVFIGGGG-----S--QA-LYDRLWEWLAPGTRIVANAVTL--ESETLLTQLHARHGGQLLRIDIA 180 (204)
T ss_dssp CCSEEEECSCC-----C--HH-HHHHHHHHSCTTCEEEEEECSH--HHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCEEEECCcc-----c--HH-HHHHHHHhcCCCcEEEEEecCc--ccHHHHHHHHHhCCCcEEEEEee
Confidence 79999988755 1 35 9999999999999999976532 33447788888889877766544
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-12 Score=117.73 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=100.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCccCCCccceEEe
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
+.++. +|||+|||+|.++..+++.+. .+++ +|+++.+++.++++ +. +.++.+|.... .+++||+|++
T Consensus 58 ~~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~ 131 (205)
T 3grz_A 58 MVKPL--TVADVGTGSGILAIAAHKLGAKSVLA--TDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVA 131 (205)
T ss_dssp CSSCC--EEEEETCTTSHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEE
T ss_pred ccCCC--EEEEECCCCCHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEE
Confidence 44555 899999999999999998865 7888 77788888877653 32 77888887664 4689999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecCCC
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPR 465 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP~~ 465 (467)
+..+++ +..++.++.++|||||.+++.++... ..+.+.+.+++.||+.+..... ++ |...+.++|.+
T Consensus 132 ~~~~~~------~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~~Gf~~~~~~~~----~~-w~~~~~~~~~~ 198 (205)
T 3grz_A 132 NILAEI------LLDLIPQLDSHLNEDGQVIFSGIDYL--QLPKIEQALAENSFQIDLKMRA----GR-WIGLAISRKHE 198 (205)
T ss_dssp ESCHHH------HHHHGGGSGGGEEEEEEEEEEEEEGG--GHHHHHHHHHHTTEEEEEEEEE----TT-EEEEEEEECC-
T ss_pred CCcHHH------HHHHHHHHHHhcCCCCEEEEEecCcc--cHHHHHHHHHHcCCceEEeecc----CC-EEEEEEecccc
Confidence 988732 35789999999999999999765543 3557888999999988765432 22 44555555543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=127.70 Aligned_cols=109 Identities=8% Similarity=0.033 Sum_probs=84.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc-----CCCccc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF-----FDNTMD 381 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf-----~d~sFD 381 (467)
+.+.+.+.++. +|||||||+|.++..+++++..|++ +|+|+.|++.++++-....+..+...++. .+++||
T Consensus 37 il~~l~l~~g~--~VLDlGcGtG~~a~~La~~g~~V~g--vD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD 112 (261)
T 3iv6_A 37 DIFLENIVPGS--TVAVIGASTRFLIEKALERGASVTV--FDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFD 112 (261)
T ss_dssp HHHTTTCCTTC--EEEEECTTCHHHHHHHHHTTCEEEE--EESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCS
T ss_pred HHHhcCCCCcC--EEEEEeCcchHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHhccceeeeeecccccccccCCCcc
Confidence 44455666666 8999999999999999999999999 78889999999876432233444443332 257899
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
+|+++.+++|+... ....++.++.++| |||.++++...
T Consensus 113 ~Vv~~~~l~~~~~~-~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 113 FVLNDRLINRFTTE-EARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp EEEEESCGGGSCHH-HHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred EEEEhhhhHhCCHH-HHHHHHHHHHHhC-cCcEEEEEecc
Confidence 99999999776544 3578999999999 99999997543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=124.83 Aligned_cols=112 Identities=12% Similarity=0.017 Sum_probs=88.1
Q ss_pred HHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCC----
Q 012235 306 LISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFD---- 377 (467)
Q Consensus 306 ~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d---- 377 (467)
.+..++. +.++. +|||+|||+|.++..+++.+.+|++ +|+++.+++.++++. .+.++++|+..+++..
T Consensus 46 ~~~~~~~~~~~~~--~vLD~GcG~G~~~~~la~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~ 121 (245)
T 3ggd_A 46 DLPRFELLFNPEL--PLIDFACGNGTQTKFLSQFFPRVIG--LDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHS 121 (245)
T ss_dssp HHHHHTTTSCTTS--CEEEETCTTSHHHHHHHHHSSCEEE--EESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHH
T ss_pred HHHHHhhccCCCC--eEEEEcCCCCHHHHHHHHhCCCEEE--EECCHHHHHHHHHhCcccCceEEECccccccccccccc
Confidence 3444443 34444 8999999999999999999888888 777889999887753 4789999988876432
Q ss_pred -CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 378 -NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 378 -~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..||+|++..+++|+ +......++.++.++|||||++++.++..
T Consensus 122 ~~~~d~v~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 122 EIGDANIYMRTGFHHI-PVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp HHCSCEEEEESSSTTS-CGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred ccCccEEEEcchhhcC-CHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 349999999999544 54446799999999999999999887654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-12 Score=117.01 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=94.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~ 378 (467)
+...+.+.++. +|||+|||+|.++..+++.+ ..+++ +|+++.+++.++++ + .+.++.+|........+
T Consensus 32 ~l~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 32 TLSKLRLQDDL--VMWDIGAGSASVSIEASNLMPNGRIFA--LERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHTTCCTTC--EEEEETCTTCHHHHHHHHHCTTSEEEE--EECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHcCCCCCC--EEEEECCCCCHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 44455666666 89999999999999999986 77888 77788888877653 2 47788898865544457
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
+||+|++..++. ....++.++.++|||||.+++..... +..+.+.+.+++.||
T Consensus 108 ~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 108 DPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTL--DTLTKAVEFLEDHGY 160 (204)
T ss_dssp CCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBH--HHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEeccc--ccHHHHHHHHHHCCC
Confidence 899999998873 24689999999999999999976543 234478888999998
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=131.47 Aligned_cols=122 Identities=17% Similarity=0.176 Sum_probs=96.8
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC--ccCCCccceEEecc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL--PFFDNTMDLIHTTG 387 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L--pf~d~sFDlVis~~ 387 (467)
++|||||||+|.++..++++ +..+++ +|+ +.+++.+.++ + .+.++.+|+... |++ ++||+|++..
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 181 KRLLDIGGNTGKWATQCVQYNKEVEVTI--VDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp SEEEEESCTTCHHHHHHHHHSTTCEEEE--EEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEE--EeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 48999999999999999985 567777 566 7888877654 2 478999998875 465 7899999999
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CHHHHHHHHHHcCce
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DLDDYMYMFLQFRYK 440 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~~~~~~~i~~~Gf~ 440 (467)
++++|.++. ...+++++.++|||||.+++.++..... ..+++.+++++.||+
T Consensus 257 vlh~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 257 FLDCFSEEE-VISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp CSTTSCHHH-HHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred hhhhCCHHH-HHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 997777653 4688999999999999999987654321 245788899999998
Q ss_pred eeEEE
Q 012235 441 KHKWA 445 (467)
Q Consensus 441 ~l~W~ 445 (467)
.++..
T Consensus 336 ~v~~~ 340 (363)
T 3dp7_A 336 VEEIQ 340 (363)
T ss_dssp ESCCC
T ss_pred EEEEE
Confidence 87653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.1e-12 Score=126.08 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=101.2
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~ 378 (467)
.+.+.+.++. +|||||||+|.++..++++ +.++++ +|+ +.+++.+.++ + .+.++.+|+...++++.
T Consensus 183 ~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 257 (359)
T 1x19_A 183 LEEAKLDGVK--KMIDVGGGIGDISAAMLKHFPELDSTI--LNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA 257 (359)
T ss_dssp HHHCCCTTCC--EEEEESCTTCHHHHHHHHHCTTCEEEE--EEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC
T ss_pred HHhcCCCCCC--EEEEECCcccHHHHHHHHHCCCCeEEE--Eec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC
Confidence 3344444444 8999999999999999987 567777 566 7777777643 2 38899999988877544
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC-------------------C------CCHHHHHHH
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------------K------KDLDDYMYM 433 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------------~------~~~~~~~~~ 433 (467)
|+|++..+++||.+. ....++.++.++|||||.+++.++..+ . ...+++.++
T Consensus 258 --D~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~l 334 (359)
T 1x19_A 258 --DAVLFCRILYSANEQ-LSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEI 334 (359)
T ss_dssp --SEEEEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHH
T ss_pred --CEEEEechhccCCHH-HHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHH
Confidence 999999999777653 357899999999999999988774321 1 244589999
Q ss_pred HHHcCceeeEEEEc
Q 012235 434 FLQFRYKKHKWAIS 447 (467)
Q Consensus 434 i~~~Gf~~l~W~~~ 447 (467)
+++.||+.+++...
T Consensus 335 l~~aGf~~v~~~~~ 348 (359)
T 1x19_A 335 LESLGYKDVTMVRK 348 (359)
T ss_dssp HHHHTCEEEEEEEE
T ss_pred HHHCCCceEEEEec
Confidence 99999998876543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-12 Score=115.21 Aligned_cols=142 Identities=11% Similarity=0.065 Sum_probs=99.9
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCc-cCCCcc
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLP-FFDNTM 380 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lp-f~d~sF 380 (467)
.+.++. +|||+|||+|.++..++++ +..+++ +|+++.+++.++++ ..+.++++|+..++ +.+++|
T Consensus 19 ~~~~~~--~vLDlGcG~G~~~~~l~~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f 94 (197)
T 3eey_A 19 FVKEGD--TVVDATCGNGNDTAFLASLVGENGRVFG--FDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPV 94 (197)
T ss_dssp HCCTTC--EEEESCCTTSHHHHHHHHHHCTTCEEEE--ECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCE
T ss_pred cCCCCC--EEEEcCCCCCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCc
Confidence 355665 8999999999999999887 257888 78888888887654 23788999988876 667899
Q ss_pred ceEEecccccc------ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCC---HHHHHHHHHH---cCceeeEEEEcc
Q 012235 381 DLIHTTGFMDG------WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKD---LDDYMYMFLQ---FRYKKHKWAISP 448 (467)
Q Consensus 381 DlVis~~~L~h------~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~---~~~~~~~i~~---~Gf~~l~W~~~~ 448 (467)
|+|+++..+.. .........++.++.++|||||.+++..+...... .+.+.+.+.. .+|....+....
T Consensus 95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~ 174 (197)
T 3eey_A 95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFIN 174 (197)
T ss_dssp EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETT
T ss_pred eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEecc
Confidence 99999875511 11122345799999999999999999876653322 2244444443 357777777766
Q ss_pred CCCCceEEE
Q 012235 449 KSKDEVYLS 457 (467)
Q Consensus 449 k~~devyl~ 457 (467)
.....-|+.
T Consensus 175 ~~~~pp~~~ 183 (197)
T 3eey_A 175 QANCPPILV 183 (197)
T ss_dssp CCSCCCEEE
T ss_pred CccCCCeEE
Confidence 533333443
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.6e-12 Score=124.53 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=97.5
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+|||+|||+|.++..++++ +.++++ +|++ .+++.++++ + .+.++.+|....+++++ ||+|++..+++
T Consensus 168 ~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~ 243 (335)
T 2r3s_A 168 KVLDISASHGLFGIAVAQHNPNAEIFG--VDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLH 243 (335)
T ss_dssp EEEEETCTTCHHHHHHHHHCTTCEEEE--EECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCGG
T ss_pred EEEEECCCcCHHHHHHHHHCCCCeEEE--EecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchhc
Confidence 8999999999999999987 678888 5566 777766543 2 38899999888777554 99999999997
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
||.+. ....++.++.++|+|||++++.++..... ..+++.+++++.||+.+++..
T Consensus 244 ~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~ 322 (335)
T 2r3s_A 244 HFDVA-TCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHS 322 (335)
T ss_dssp GSCHH-HHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred cCCHH-HHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEE
Confidence 77544 35789999999999999999987765421 245888999999999888754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-12 Score=113.23 Aligned_cols=126 Identities=22% Similarity=0.165 Sum_probs=92.5
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCC-CCccCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQ-RLPFFD 377 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~-~Lpf~d 377 (467)
...+...++. +|||+|||+|.++..+++. +..+++ +|+++.+++.++++ + .+ ++.++.. .++..+
T Consensus 18 ~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 18 ISALAPKPHE--TLWDIGGGSGSIAIEWLRSTPQTTAVC--FEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHCCCTTE--EEEEESTTTTHHHHHHHTTSSSEEEEE--ECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHhcccCCC--eEEEeCCCCCHHHHHHHHHCCCCeEEE--EeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 3445566665 8999999999999999988 667777 78888888888754 2 25 6677753 444433
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
++||+|++..++.| ..++.++.++|||||.+++..+.. +....+.+.+++.|+...+....
T Consensus 93 ~~~D~i~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 153 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA-------PGVFAAAWKRLPVGGRLVANAVTV--ESEQMLWALRKQFGGTISSFAIS 153 (178)
T ss_dssp SCCSEEEECC-TTC-------TTHHHHHHHTCCTTCEEEEEECSH--HHHHHHHHHHHHHCCEEEEEEEE
T ss_pred CCCCEEEECCcccH-------HHHHHHHHHhcCCCCEEEEEeecc--ccHHHHHHHHHHcCCeeEEEEee
Confidence 89999999999854 258999999999999999877543 22336777888888766554433
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-12 Score=121.58 Aligned_cols=116 Identities=8% Similarity=0.029 Sum_probs=89.5
Q ss_pred eEEEECCCccHHHHHHhh--CCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC---CCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMRE--QNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF---DNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~--~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~---d~sFDlVis~~~ 388 (467)
+|||+|||+|.++..++. .+..|++ +|+++.+++.++++ + .+.++++|+..+++. +++||+|++..+
T Consensus 73 ~vLDiG~G~G~~~~~la~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~ 150 (240)
T 1xdz_A 73 TICDVGAGAGFPSLPIKICFPHLHVTI--VDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV 150 (240)
T ss_dssp EEEEECSSSCTTHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred EEEEecCCCCHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc
Confidence 899999999999999984 4678888 77888888777542 3 378999998887764 689999999763
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
- + +..++.++.++|||||.+++..-....+....+.+.++..||.....
T Consensus 151 ~----~---~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~ 199 (240)
T 1xdz_A 151 A----R---LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENI 199 (240)
T ss_dssp S----C---HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred C----C---HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEE
Confidence 2 2 46899999999999999998653333333446777888899976544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.8e-12 Score=118.10 Aligned_cols=144 Identities=17% Similarity=0.102 Sum_probs=100.7
Q ss_pred CCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCC-ccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRL-PFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~L-pf~d~sFDlVi 384 (467)
+.++. +|||+||| +|.++..+++. +..|++ +|+++.+++.++++ + .+.++++|+..+ ++++++||+|+
T Consensus 53 ~~~~~--~vLDlG~G~~G~~~~~la~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 53 LRGGE--VALEIGTGHTAMMALMAEKFFNCKVTA--TEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp CCSSC--EEEEECCTTTCHHHHHHHHHHCCEEEE--EECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEE
T ss_pred cCCCC--EEEEcCCCHHHHHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEE
Confidence 44555 89999999 99999999998 889999 67778888777643 3 378899986543 45578999999
Q ss_pred eccccccccc----------------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEcc
Q 012235 385 TTGFMDGWLD----------------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 385 s~~~L~h~~~----------------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
++..+.+..+ ...+..++.++.++|||||.+++...... ...+.+.+.+++.||........
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~- 206 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-KLLNVIKERGIKLGYSVKDIKFK- 206 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-HHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-hHHHHHHHHHHHcCCceEEEEec-
Confidence 9876633221 11136789999999999999998654321 23447888899999965554432
Q ss_pred CCCCceEEEEEeecC
Q 012235 449 KSKDEVYLSALLEKP 463 (467)
Q Consensus 449 k~~devyl~avlqKP 463 (467)
....+....+++|+
T Consensus 207 -~g~~~~~~l~f~~~ 220 (230)
T 3evz_A 207 -VGTRWRHSLIFFKG 220 (230)
T ss_dssp -CCC-CEEEEEEECC
T ss_pred -CCCeEEEEEEEecc
Confidence 22344444556665
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=119.08 Aligned_cols=133 Identities=13% Similarity=0.134 Sum_probs=97.6
Q ss_pred HHHHHhcCC-CCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCc--
Q 012235 306 LISDILAIK-PGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLP-- 374 (467)
Q Consensus 306 ~I~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lp-- 374 (467)
.+..++.+. ++. +|||+|||+|.++..+++++. .|++ +|+++.+++.++++ + .+.++++|+..++
T Consensus 39 ll~~~~~~~~~~~--~vLDlG~G~G~~~~~la~~~~~~v~g--vDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~ 114 (259)
T 3lpm_A 39 LLAKFSYLPIRKG--KIIDLCSGNGIIPLLLSTRTKAKIVG--VEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL 114 (259)
T ss_dssp HHHHHCCCCSSCC--EEEETTCTTTHHHHHHHTTCCCEEEE--ECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred HHHHHhcCCCCCC--EEEEcCCchhHHHHHHHHhcCCcEEE--EECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence 344555555 565 899999999999999999865 7888 77788888877653 3 3788999988776
Q ss_pred cCCCccceEEeccccccc-----------------cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc
Q 012235 375 FFDNTMDLIHTTGFMDGW-----------------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF 437 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~-----------------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~ 437 (467)
+++++||+|+++..+.+. .....++.++.++.++|||||.+++.. ..+...++...+++.
T Consensus 115 ~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~l~~~ 191 (259)
T 3lpm_A 115 IPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH---RPERLLDIIDIMRKY 191 (259)
T ss_dssp SCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE---CTTTHHHHHHHHHHT
T ss_pred hccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE---cHHHHHHHHHHHHHC
Confidence 457899999998655222 011235679999999999999999954 344556788888888
Q ss_pred CceeeEEE
Q 012235 438 RYKKHKWA 445 (467)
Q Consensus 438 Gf~~l~W~ 445 (467)
||......
T Consensus 192 ~~~~~~~~ 199 (259)
T 3lpm_A 192 RLEPKRIQ 199 (259)
T ss_dssp TEEEEEEE
T ss_pred CCceEEEE
Confidence 88655443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-12 Score=113.58 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=98.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------cCCCccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP--------FFDNTMD 381 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp--------f~d~sFD 381 (467)
+.++. +|||+|||+|.++..+++. +..++++|++. +++. ..+.++++|....+ +++++||
T Consensus 20 ~~~~~--~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 20 FKPGM--TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDPI----VGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CCTTC--EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCCC----TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCC--eEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---cccc----CcEEEEEcccccchhhhhhhccCCCCcee
Confidence 44555 8999999999999999987 36889866553 3322 34788899988877 7778999
Q ss_pred eEEeccccccccch--hh------HHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccC---C
Q 012235 382 LIHTTGFMDGWLDM--LL------LDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPK---S 450 (467)
Q Consensus 382 lVis~~~L~h~~~~--~~------l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k---~ 450 (467)
+|+++.++++.... .. ...++.++.++|+|||.+++..+... ....+.+.+... |..+.+..... .
T Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 167 (180)
T 1ej0_A 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE--GFDEYLREIRSL-FTKVKVRKPDSSRAR 167 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--THHHHHHHHHHH-EEEEEEECCTTSCTT
T ss_pred EEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC--cHHHHHHHHHHh-hhhEEeecCCccccc
Confidence 99998887332221 00 14789999999999999999776443 344566666665 77776553332 3
Q ss_pred CCceEEEEEeecC
Q 012235 451 KDEVYLSALLEKP 463 (467)
Q Consensus 451 ~devyl~avlqKP 463 (467)
..+.|+.+.-.||
T Consensus 168 ~~~~~~~~~~~~~ 180 (180)
T 1ej0_A 168 SREVYIVATGRKP 180 (180)
T ss_dssp CCEEEEEEEEECC
T ss_pred CceEEEEEccCCC
Confidence 4567877766654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.3e-13 Score=131.51 Aligned_cols=99 Identities=11% Similarity=0.040 Sum_probs=75.6
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----CC--------ccEEEccC------CCC--ccCCC
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----GL--------IPLYVTLN------QRL--PFFDN 378 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g~--------i~~~~~d~------~~L--pf~d~ 378 (467)
+|||||||+|..+..++.. +.+|+| +|+|+.|++.|+++ +. +.+.+.++ ..+ +++++
T Consensus 51 ~VLDlGCG~G~~l~~~~~~~~~~v~G--iD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~ 128 (302)
T 2vdw_A 51 KVLAIDFGNGADLEKYFYGEIALLVA--TDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG 128 (302)
T ss_dssp EEEETTCTTTTTHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred eEEEEecCCcHhHHHHHhcCCCeEEE--EECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence 8999999999866665555 578888 88899999988764 21 34667665 333 35678
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+||+|+|.+++++..+.+....++.++.|+|||||+|+++++
T Consensus 129 ~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 129 KFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp CEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999999999994333333457999999999999999998765
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-12 Score=125.95 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=96.7
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..++++ +..+++ +|+ +.+++.+.++ ..+.+..+|+. .+++. +||+|++..++
T Consensus 171 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 245 (332)
T 3i53_A 171 GHVVDVGGGSGGLLSALLTAHEDLSGTV--LDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL 245 (332)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred CEEEEeCCChhHHHHHHHHHCCCCeEEE--ecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence 48999999999999999986 456666 677 7888777643 34889999986 45544 89999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------CCHHHHHHHHHHcCceeeEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+||.++ ....+++++.++|||||++++.++..+. ...+++.+++++.||+.++...
T Consensus 246 h~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 246 HDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp GGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 777765 3568999999999999999998765433 1345889999999999887654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-12 Score=121.21 Aligned_cols=98 Identities=21% Similarity=0.234 Sum_probs=80.9
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
.+|||+|||+|.++..+++.|..|++ +|+++.+++.++++ + .+.++++|+..++++ ++||+|++.....++.
T Consensus 43 ~~vLDlGcG~G~~~~~l~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~ 119 (252)
T 1wzn_A 43 RRVLDLACGTGIPTLELAERGYEVVG--LDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF 119 (252)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred CEEEEeCCCCCHHHHHHHHCCCeEEE--EECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcC
Confidence 38999999999999999999999998 77888888877653 3 378999999888764 7899999875443554
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+......++.++.++|||||.+++..
T Consensus 120 ~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 120 DEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 54456899999999999999998864
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-12 Score=127.67 Aligned_cols=131 Identities=21% Similarity=0.125 Sum_probs=97.9
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~s 379 (467)
+.+.+.++. +|||||||+|.++..+++. +..+++ +|+ +.+++.++++ + .+.++.+|+.. +++. .
T Consensus 176 ~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~~~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~ 248 (374)
T 1qzz_A 176 DAYDWSAVR--HVLDVGGGNGGMLAAIALRAPHLRGTL--VEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-T 248 (374)
T ss_dssp HTSCCTTCC--EEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-C
T ss_pred HhCCCCCCC--EEEEECCCcCHHHHHHHHHCCCCEEEE--EeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-C
Confidence 334444444 8999999999999999987 456766 667 7888877653 2 47889998765 3433 4
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec--ccCC----------------------CCHHHHHHHHH
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF--FCNK----------------------KDLDDYMYMFL 435 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~--~~~~----------------------~~~~~~~~~i~ 435 (467)
||+|++..+++||.+.. ...++.++.++|||||++++.++ ..+. ...+++.++++
T Consensus 249 ~D~v~~~~vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 327 (374)
T 1qzz_A 249 ADVVLLSFVLLNWSDED-ALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAG 327 (374)
T ss_dssp EEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred CCEEEEeccccCCCHHH-HHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHH
Confidence 99999999997776553 35899999999999999999887 4322 13457888999
Q ss_pred HcCceeeEEEEc
Q 012235 436 QFRYKKHKWAIS 447 (467)
Q Consensus 436 ~~Gf~~l~W~~~ 447 (467)
+.||+.++....
T Consensus 328 ~aGf~~~~~~~~ 339 (374)
T 1qzz_A 328 SAGLALASERTS 339 (374)
T ss_dssp TTTEEEEEEEEE
T ss_pred HCCCceEEEEEC
Confidence 999998876543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=125.76 Aligned_cols=122 Identities=13% Similarity=0.118 Sum_probs=97.2
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..++++ +..+++ +|+ +.+++.+.++ +.+.++.+|+. .+++. .||+|++..++
T Consensus 204 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 278 (369)
T 3gwz_A 204 ATAVDIGGGRGSLMAAVLDAFPGLRGTL--LER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHVL 278 (369)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCG
T ss_pred cEEEEeCCCccHHHHHHHHHCCCCeEEE--EcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhhh
Confidence 48999999999999999987 556766 666 7777777642 34889999987 45555 89999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
++|.+. ....+++++.++|||||++++.++..+.. ..++|.+++++.||+.++...
T Consensus 279 h~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 279 HDWDDD-DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp GGSCHH-HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred ccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence 666655 34579999999999999999988765441 245788999999999987754
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=123.66 Aligned_cols=137 Identities=13% Similarity=0.116 Sum_probs=101.6
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCc-cCCCccceEEeccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLP-FFDNTMDLIHTTGF 388 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lp-f~d~sFDlVis~~~ 388 (467)
.+|||||||+|.++..++++ +.++++ +|+ +.+++.+.++ + .+.++.+|....+ +.++.||+|++..+
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 181 RTVIDLAGGHGTYLAQVLRRHPQLTGQI--WDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEE--EEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCeEEE--EEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 48999999999999999987 556777 555 5566665532 3 3789999988776 24567999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------------CHHHHHHHHHHcCceeeEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------------DLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------------~~~~~~~~i~~~Gf~~l~W 444 (467)
++||.+. ....++.++.++|||||++++.++..+.. ..+++.+++++.||+.+.-
T Consensus 258 lh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 258 LHYFDAR-EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp GGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 9777654 35789999999999999999987543221 2447889999999998873
Q ss_pred EEccCCCCceEEEEEeecCCC
Q 012235 445 AISPKSKDEVYLSALLEKPPR 465 (467)
Q Consensus 445 ~~~~k~~devyl~avlqKP~~ 465 (467)
..+ . +...+.+||..
T Consensus 337 ~~g----~--~~l~~a~kp~~ 351 (352)
T 3mcz_A 337 SIG----R--YTLLIGQRSSG 351 (352)
T ss_dssp EET----T--EEEEEEECCCC
T ss_pred ccC----c--eEEEEEecCCC
Confidence 321 1 33445688853
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=111.81 Aligned_cols=129 Identities=11% Similarity=0.103 Sum_probs=95.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--C--ccEEEccCCCCccCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--L--IPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~--i~~~~~d~~~Lpf~d 377 (467)
.+.+.+...++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ + . +.++.+|... ++++
T Consensus 43 ~l~~~~~~~~~~--~vLdiG~G~G~~~~~~~~~~~~v~~--~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 117 (194)
T 1dus_A 43 ILVENVVVDKDD--DILDLGCGYGVIGIALADEVKSTTM--ADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD 117 (194)
T ss_dssp HHHHHCCCCTTC--EEEEETCTTSHHHHHHGGGSSEEEE--EESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT
T ss_pred HHHHHcccCCCC--eEEEeCCCCCHHHHHHHHcCCeEEE--EECCHHHHHHHHHHHHHcCCCccceEEEECchhc-cccc
Confidence 344555555555 8999999999999999998888998 66778887777653 2 2 6788888776 3457
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
++||+|+++.++ |+. ......++.++.++|+|||.+++..+... ....+.+.+++. |..+.+
T Consensus 118 ~~~D~v~~~~~~-~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~-~~~~~~ 179 (194)
T 1dus_A 118 RKYNKIITNPPI-RAG-KEVLHRIIEEGKELLKDNGEIWVVIQTKQ--GAKSLAKYMKDV-FGNVET 179 (194)
T ss_dssp SCEEEEEECCCS-TTC-HHHHHHHHHHHHHHEEEEEEEEEEEESTH--HHHHHHHHHHHH-HSCCEE
T ss_pred CCceEEEECCCc-ccc-hhHHHHHHHHHHHHcCCCCEEEEEECCCC--ChHHHHHHHHHH-hcceEE
Confidence 899999999887 432 12256899999999999999999876542 233566777766 655554
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.1e-12 Score=116.79 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=95.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC-------C----Cccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF-------D----NTMD 381 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~-------d----~sFD 381 (467)
+.++. +|||+|||+|.++..+++++..|+++|++.... ...+.++++|+...+.. . ++||
T Consensus 23 ~~~g~--~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D 93 (191)
T 3dou_A 23 VRKGD--AVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVD 93 (191)
T ss_dssp SCTTC--EEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEE
T ss_pred CCCCC--EEEEEeecCCHHHHHHHHcCCcEEEEecccccc-------CCCeEEEEccccCHHHHHHHHHHhhcccCCcce
Confidence 45565 899999999999999999988999976654211 12478999998876521 1 4899
Q ss_pred eEEeccccc--------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEcc---CC
Q 012235 382 LIHTTGFMD--------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISP---KS 450 (467)
Q Consensus 382 lVis~~~L~--------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~---k~ 450 (467)
+|+++.... +.......+.++..+.++|||||.|++..+.... ...+...++.. |..+...... ..
T Consensus 94 ~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~--~~~~~~~l~~~-F~~v~~~kP~asR~~ 170 (191)
T 3dou_A 94 DVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM--TNDFIAIWRKN-FSSYKISKPPASRGS 170 (191)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH--HHHHHHHHGGG-EEEEEEECC------
T ss_pred EEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC--HHHHHHHHHHh-cCEEEEECCCCccCC
Confidence 999976431 1111122357889999999999999987764332 33566667655 8777664332 25
Q ss_pred CCceEEEEEeecC
Q 012235 451 KDEVYLSALLEKP 463 (467)
Q Consensus 451 ~devyl~avlqKP 463 (467)
..|+|+.+.--|.
T Consensus 171 s~E~y~v~~~~~~ 183 (191)
T 3dou_A 171 SSEIYIMFFGFKA 183 (191)
T ss_dssp CCEEEEEEEEECC
T ss_pred CceEEEEEeeecc
Confidence 6789998765553
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.4e-12 Score=127.10 Aligned_cols=123 Identities=13% Similarity=0.105 Sum_probs=97.0
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
..+|||||||+|.++..++++ +.++++ +|+ +.+++.+.+...+.++.+|+.. |++++ |+|++..+++||.+.
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~ 277 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPSINAIN--FDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDE 277 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHH
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEE--Eeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCHH
Confidence 348999999999999999986 455666 666 7777776665668999999876 66654 999999999777765
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CHHHHHHHHHHcCceeeEEEEc
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
. ...+++++.++|||||++++.++..+.. ..++|.+++++.||+.++....
T Consensus 278 ~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 355 (368)
T 3reo_A 278 H-CLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASC 355 (368)
T ss_dssp H-HHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEE
T ss_pred H-HHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEe
Confidence 3 4689999999999999999987654321 1347889999999998876544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=116.48 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=88.4
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHH----HHHHHHcCCccEEEccCCC---CccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPF----NEMIALRGLIPLYVTLNQR---LPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~----l~~a~~rg~i~~~~~d~~~---Lpf~d~sFDl 382 (467)
+.++. +|||+|||+|.++..+++. +..|++ +|+++.+ ++.+..+..+.++++|+.. +++.+++||+
T Consensus 75 ~~~~~--~vLDlG~G~G~~~~~la~~~g~~~~v~g--vD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 75 IKPGA--KVLYLGAASGTTVSHVSDIVGPDGLVYA--VEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDV 150 (233)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEE--ECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred CCCCC--EEEEEcccCCHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEE
Confidence 44555 8999999999999999987 367888 6777654 4455555568889999877 4556789999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc---CCCCHH----HHHHHHHHcCceeeEEEE
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC---NKKDLD----DYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~---~~~~~~----~~~~~i~~~Gf~~l~W~~ 446 (467)
|++.... ......++.++.++|||||.+++..... ...... ...+++++.||+.+....
T Consensus 151 V~~~~~~-----~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 216 (233)
T 2ipx_A 151 IFADVAQ-----PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLT 216 (233)
T ss_dssp EEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEE
T ss_pred EEEcCCC-----ccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEe
Confidence 9996551 2222456889999999999999964431 111111 115677788998887443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=116.07 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=89.9
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc--cCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP--FFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp--f~d~sFDlVis~~~L 389 (467)
+|||||||+|.++..+++. +..++| +|+++.+++.+.++ + .+.++.+|+..++ +++++||+|++++..
T Consensus 44 ~vLDiGcG~G~~~~~la~~~p~~~v~g--vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~ 121 (214)
T 1yzh_A 44 IHVEVGSGKGAFVSGMAKQNPDINYIG--IDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 121 (214)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred eEEEEccCcCHHHHHHHHHCCCCCEEE--EEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC
Confidence 8999999999999999987 567888 77788888877643 3 4789999998887 778899999999765
Q ss_pred ccccchh------hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 390 DGWLDML------LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 390 ~h~~~~~------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
+|.... ....++.++.++|||||.+++.+.. .+..+...+.++..||....
T Consensus 122 -~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 122 -PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--RGLFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHHTCEEEE
T ss_pred -CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC--HHHHHHHHHHHHHCCCeeee
Confidence 443210 1247999999999999999996521 11123566777888887654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-11 Score=114.75 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=89.1
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc----CCccEEEccCCC----CccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQR----LPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~----Lpf~d~sFDl 382 (467)
+.++. +|||+|||+|.++..+++. + ..|++ +|+++.+++.+.++ ..+.++.+|+.. +++. ++||+
T Consensus 72 ~~~~~--~VLDlGcG~G~~~~~la~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~ 146 (230)
T 1fbn_A 72 IKRDS--KILYLGASAGTTPSHVADIADKGIVYA--IEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDV 146 (230)
T ss_dssp CCTTC--EEEEESCCSSHHHHHHHHHTTTSEEEE--EESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEE
T ss_pred CCCCC--EEEEEcccCCHHHHHHHHHcCCcEEEE--EECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEE
Confidence 34454 8999999999999999987 4 67888 77888888877653 347788899887 6665 78999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc-cCCCC------H-HHHHHHHHHcCceeeEEEEc
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF-CNKKD------L-DDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~-~~~~~------~-~~~~~~i~~~Gf~~l~W~~~ 447 (467)
|+. +..+......++.++.++|||||.+++.... +.... . +++. .++..||+.+.....
T Consensus 147 v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~ 213 (230)
T 1fbn_A 147 IYE-----DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDI 213 (230)
T ss_dssp EEE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEEC
T ss_pred EEE-----ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEcc
Confidence 993 2233322357899999999999999996211 11111 1 2444 778889988776543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=124.24 Aligned_cols=134 Identities=18% Similarity=0.124 Sum_probs=97.9
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCcc
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sF 380 (467)
.+.+.+.++. +|||||||+|.++..+++.+..+.++++|+ +.+++.++++ + .+.++.+|... +++. .|
T Consensus 176 ~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~ 250 (360)
T 1tw3_A 176 AAAYDWTNVR--HVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KA 250 (360)
T ss_dssp HHHSCCTTCS--EEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CE
T ss_pred HHhCCCccCc--EEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-Cc
Confidence 3444555554 899999999999999998743333344666 6777766542 2 47888998765 3433 49
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc-cCCC----------------------CHHHHHHHHHHc
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF-CNKK----------------------DLDDYMYMFLQF 437 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~-~~~~----------------------~~~~~~~~i~~~ 437 (467)
|+|++..+++||.+.. ...++.++.++|||||.+++.++. .+.. ..+++.+++++.
T Consensus 251 D~v~~~~vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 329 (360)
T 1tw3_A 251 DAIILSFVLLNWPDHD-AVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASA 329 (360)
T ss_dssp EEEEEESCGGGSCHHH-HHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred cEEEEcccccCCCHHH-HHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHC
Confidence 9999999997776553 458999999999999999998776 2211 234788899999
Q ss_pred CceeeEEEEc
Q 012235 438 RYKKHKWAIS 447 (467)
Q Consensus 438 Gf~~l~W~~~ 447 (467)
||+.++....
T Consensus 330 Gf~~~~~~~~ 339 (360)
T 1tw3_A 330 GLVVEEVRQL 339 (360)
T ss_dssp TEEEEEEEEE
T ss_pred CCeEEEEEeC
Confidence 9998876543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-12 Score=127.02 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=96.8
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
.+|||||||+|.++..++++ +.++++ +|+ +.+++.+.+...+.++.+|+.. |++.+ |+|++..++++|.+..
T Consensus 203 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~ 276 (364)
T 3p9c_A 203 GTLVDVGGGVGATVAAIAAHYPTIKGVN--FDL-PHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQH 276 (364)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCeEEE--ecC-HHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHH
Confidence 48999999999999999986 456666 566 6777766666668999999887 77654 9999999997776553
Q ss_pred hHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CHHHHHHHHHHcCceeeEEEEc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
...+|+++.++|||||++++.++..+.. ..++|.+++++.||+.++....
T Consensus 277 -~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 353 (364)
T 3p9c_A 277 -CATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYI 353 (364)
T ss_dssp -HHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEE
T ss_pred -HHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEc
Confidence 5689999999999999999987654321 1346888999999998876543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=118.51 Aligned_cols=161 Identities=13% Similarity=0.087 Sum_probs=106.7
Q ss_pred ccccccccCCcChHHHHHH---HhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc----
Q 012235 291 EKPKWVANRSVPVDFLISD---ILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR---- 360 (467)
Q Consensus 291 e~~~W~~~~~~~~d~~I~~---lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r---- 360 (467)
+-+.|.- ........|.. .+.+++|+ +|||+|||+|+++..+++. | -.|++ +|+++.|++.+.++
T Consensus 51 e~r~w~p-~rsklaa~i~~gl~~l~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~a--vD~s~~~~~~l~~~a~~~ 125 (233)
T 4df3_A 51 EYREWNA-YRSKLAAALLKGLIELPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYG--VEFAPRVMRDLLTVVRDR 125 (233)
T ss_dssp EEEECCT-TTCHHHHHHHTTCSCCCCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEE--EECCHHHHHHHHHHSTTC
T ss_pred eeeeECC-CchHHHHHHHhchhhcCCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEE--EeCCHHHHHHHHHhhHhh
Confidence 5566765 33322233322 24578888 9999999999999999987 4 45777 88889998877643
Q ss_pred CCccEEEccCCC---CccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC-------CCCHHHH
Q 012235 361 GLIPLYVTLNQR---LPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------KKDLDDY 430 (467)
Q Consensus 361 g~i~~~~~d~~~---Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------~~~~~~~ 430 (467)
+++..+.++... .++..+++|+|++.... ++ . .+.++.++.|+|||||.++++..... ....+..
T Consensus 126 ~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~-~~--~--~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~e 200 (233)
T 4df3_A 126 RNIFPILGDARFPEKYRHLVEGVDGLYADVAQ-PE--Q--AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKRE 200 (233)
T ss_dssp TTEEEEESCTTCGGGGTTTCCCEEEEEECCCC-TT--H--HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHH
T ss_pred cCeeEEEEeccCccccccccceEEEEEEeccC-Ch--h--HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHH
Confidence 456677776543 45667899999876543 22 2 35799999999999999998643221 1122345
Q ss_pred HHHHHHcCceeeEEEEcc-CCCCceEEEEEee
Q 012235 431 MYMFLQFRYKKHKWAISP-KSKDEVYLSALLE 461 (467)
Q Consensus 431 ~~~i~~~Gf~~l~W~~~~-k~~devyl~avlq 461 (467)
.+.++..||+.+.-.... ...+...+.++++
T Consensus 201 v~~L~~~GF~l~e~i~L~pf~~~H~lv~~~~r 232 (233)
T 4df3_A 201 IKTLMDGGLEIKDVVHLDPFDRDHAMIYAVMR 232 (233)
T ss_dssp HHHHHHTTCCEEEEEECTTTSTTEEEEEECC-
T ss_pred HHHHHHCCCEEEEEEccCCCCCceEEEEEEEe
Confidence 566778899877654332 2445555555554
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-12 Score=128.98 Aligned_cols=123 Identities=16% Similarity=0.089 Sum_probs=95.1
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhH
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLL 398 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l 398 (467)
.+|||||||+|.++..++++...+.++.+|+ +.+++.+.+...+.++.+|+.. ++++ ||+|++..+++||.+.. .
T Consensus 211 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~~-~ 285 (372)
T 1fp1_D 211 STLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEK-C 285 (372)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHH-H
T ss_pred CEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCHHH-H
Confidence 4899999999999999998854444444677 7777776654558899999877 6654 99999999997776652 4
Q ss_pred HHHHHHHHhccCCCcEEEEEecccCCC--------------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 399 DFILFDWDRILRPGGLLWIDRFFCNKK--------------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 399 ~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
..+++++.++|||||.+++.++..+.. ..+++.+++++.||+.++...
T Consensus 286 ~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 286 IEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC 359 (372)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 589999999999999999986543221 234777888999998887654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-11 Score=111.54 Aligned_cols=134 Identities=15% Similarity=0.182 Sum_probs=91.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------------
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------------- 374 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------------- 374 (467)
+.++. +|||+|||+|.++..++++ +..|+++|++... ....+.++++|+...+
T Consensus 20 ~~~~~--~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 20 LKKNK--IILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp CCTTE--EEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-------CCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-------CCCCceEEEccccchhhhhhcccccccccc
Confidence 45554 8999999999999999987 3678886655321 1123778899988776
Q ss_pred -----------cCCCccceEEecccccccc-----chh----hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHH
Q 012235 375 -----------FFDNTMDLIHTTGFMDGWL-----DML----LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMF 434 (467)
Q Consensus 375 -----------f~d~sFDlVis~~~L~h~~-----~~~----~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i 434 (467)
+++++||+|+++.++ |+. +.. ....++.++.++|||||.|++..+.. ++...+...+
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~l~~~l 167 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAAV-PCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG--SQTNNLKTYL 167 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS--TTHHHHHHHH
T ss_pred chhhHHHHHhhcCCCcccEEEeCCCc-CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC--CCHHHHHHHH
Confidence 567899999998877 442 111 01247899999999999999866542 3344666666
Q ss_pred HHcCceeeEEEEccC---CCCceEEEEE
Q 012235 435 LQFRYKKHKWAISPK---SKDEVYLSAL 459 (467)
Q Consensus 435 ~~~Gf~~l~W~~~~k---~~devyl~av 459 (467)
+.. |..+.+..... ...|.|+.+.
T Consensus 168 ~~~-f~~v~~~~~~~~r~~s~e~y~v~~ 194 (201)
T 2plw_A 168 KGM-FQLVHTTKPKASRNESREIYLVCK 194 (201)
T ss_dssp HTT-EEEEEECCCC-----CCEEEEEEE
T ss_pred HHH-HheEEEECCcccCCcCceEEEEEe
Confidence 654 76665532221 4557787654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=121.24 Aligned_cols=122 Identities=9% Similarity=-0.010 Sum_probs=95.3
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..++++ +..+++ +|+ +.+++.++++ ..+.++.+|... +++ ++||+|++..++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVM--LDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEE--EEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEE--eCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhc
Confidence 48999999999999999987 567777 555 5666665543 358899999876 554 689999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+||.+.. ...++.++.++|||||++++.++..+.. ..+++.+++++.||+.++...
T Consensus 244 ~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 244 GDLDEAA-SLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp GGCCHHH-HHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCHHH-HHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 7786553 4689999999999999999987654321 244788899999998877543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=123.66 Aligned_cols=131 Identities=11% Similarity=0.039 Sum_probs=94.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH-----HcCCccEEEccCCCCccCCCccceE
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA-----LRGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~-----~rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
+.+.+.++. +|||||||+|.++..++++...+.++.+|++ .++.... ..+.+.++.+|+. .+++ +||+|
T Consensus 178 ~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v 251 (348)
T 3lst_A 178 RAGDFPATG--TVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVH 251 (348)
T ss_dssp HHSCCCSSE--EEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEE
T ss_pred HhCCccCCc--eEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEE
Confidence 334444444 8999999999999999987444444446663 3333111 0123788899985 3444 89999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------------------CHHHHHHHHHHcCcee
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------------------DLDDYMYMFLQFRYKK 441 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------------------~~~~~~~~i~~~Gf~~ 441 (467)
++..+++||.+.+ ...+++++.++|||||++++.++..... ..+++.+++++.||+.
T Consensus 252 ~~~~vlh~~~d~~-~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 330 (348)
T 3lst_A 252 VLKRILHNWGDED-SVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRL 330 (348)
T ss_dssp EEESCGGGSCHHH-HHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEE
T ss_pred EEehhccCCCHHH-HHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCce
Confidence 9999997777653 4689999999999999999987654332 2457889999999998
Q ss_pred eEEEE
Q 012235 442 HKWAI 446 (467)
Q Consensus 442 l~W~~ 446 (467)
++...
T Consensus 331 ~~~~~ 335 (348)
T 3lst_A 331 DRVVG 335 (348)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87655
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=111.96 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=87.5
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCcc---CCCccceEEec
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLPF---FDNTMDLIHTT 386 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lpf---~d~sFDlVis~ 386 (467)
++.++. +|||+|||. +.+|+++.|++.++++. .+.+.++|+..+++ ++++||+|+++
T Consensus 9 g~~~g~--~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 9 GISAGQ--FVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp TCCTTS--EEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred CCCCCC--EEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEEC
Confidence 456666 999999996 12889999999998764 48899999999987 78999999999
Q ss_pred cccccc-cchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------CHHHHHHHHHHcCc
Q 012235 387 GFMDGW-LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------DLDDYMYMFLQFRY 439 (467)
Q Consensus 387 ~~L~h~-~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------~~~~~~~~i~~~Gf 439 (467)
.+++|+ .+. ..++.++.|+|||||+|++.++..... ..+++.+.+++.||
T Consensus 71 ~~l~~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 71 LVPGSTTLHS---AEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp CSTTCCCCCC---HHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred ChhhhcccCH---HHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 999665 343 689999999999999999976543211 25689999999999
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=117.01 Aligned_cols=118 Identities=14% Similarity=0.204 Sum_probs=87.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc--cCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP--FFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp--f~d~sFDlVis~~~L 389 (467)
+|||||||+|.++..+++. +..++| +|+++.+++.+.++ + .+.++++|+..++ +++++||.|++++..
T Consensus 41 ~vLDiGcG~G~~~~~la~~~p~~~v~g--iD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~ 118 (213)
T 2fca_A 41 IHIEVGTGKGQFISGMAKQNPDINYIG--IELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 118 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred eEEEEecCCCHHHHHHHHHCCCCCEEE--EEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCC
Confidence 8999999999999999987 678888 88889988877653 3 3788899988876 678899999987654
Q ss_pred ccccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 390 DGWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 390 ~h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
.|... .....++.++.++|||||.|++.+... +..+...+.+...||...
T Consensus 119 -p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~--~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 119 -PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR--GLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH--HHHHHHHHHHHHHTCEEE
T ss_pred -CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCccc
Confidence 33321 012578999999999999999965211 112244566777777543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-12 Score=124.04 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=88.9
Q ss_pred ccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcCC-ccEEE-cc
Q 012235 293 PKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRGL-IPLYV-TL 369 (467)
Q Consensus 293 ~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg~-i~~~~-~d 369 (467)
..|..+.+......+.. +.+... ..+|||||||+|.++..++++|. .|+| +|+++.|++.+.++.. +.... .+
T Consensus 15 ~~yvsrg~~kL~~~L~~-~~~~~~-g~~VLDiGcGtG~~t~~la~~g~~~V~g--vDis~~ml~~a~~~~~~~~~~~~~~ 90 (232)
T 3opn_A 15 LRYVSRGGLKLEKALKE-FHLEIN-GKTCLDIGSSTGGFTDVMLQNGAKLVYA--LDVGTNQLAWKIRSDERVVVMEQFN 90 (232)
T ss_dssp CCSSSTTHHHHHHHHHH-TTCCCT-TCEEEEETCTTSHHHHHHHHTTCSEEEE--ECSSCCCCCHHHHTCTTEEEECSCC
T ss_pred CCccCCcHHHHHHHHHH-cCCCCC-CCEEEEEccCCCHHHHHHHhcCCCEEEE--EcCCHHHHHHHHHhCccccccccce
Confidence 45777544434333433 333322 23899999999999999999985 8888 7777888887665432 11111 11
Q ss_pred C-----CCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe---cccCC----------------C
Q 012235 370 N-----QRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR---FFCNK----------------K 425 (467)
Q Consensus 370 ~-----~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~---~~~~~----------------~ 425 (467)
. ..++ ...||.+.+..++.++ ..++.++.|+|||||.+++.. +.... .
T Consensus 91 ~~~~~~~~~~--~~~~d~~~~D~v~~~l------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~ 162 (232)
T 3opn_A 91 FRNAVLADFE--QGRPSFTSIDVSFISL------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQM 162 (232)
T ss_dssp GGGCCGGGCC--SCCCSEEEECCSSSCG------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHH
T ss_pred EEEeCHhHcC--cCCCCEEEEEEEhhhH------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHH
Confidence 1 1111 1123444443333222 368999999999999999862 11000 1
Q ss_pred CHHHHHHHHHHcCceeeEEEEccC
Q 012235 426 DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 426 ~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
..+++.+++++.||....+...+.
T Consensus 163 ~~~~l~~~l~~aGf~v~~~~~~pi 186 (232)
T 3opn_A 163 TIEKVLKTATQLGFSVKGLTFSPI 186 (232)
T ss_dssp HHHHHHHHHHHHTEEEEEEEECSS
T ss_pred HHHHHHHHHHHCCCEEEEEEEccC
Confidence 233788889999999988877654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.1e-12 Score=124.21 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=81.3
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC-------------CccEEEccCCCCc----cC--CCc
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG-------------LIPLYVTLNQRLP----FF--DNT 379 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg-------------~i~~~~~d~~~Lp----f~--d~s 379 (467)
+|||+|||+|.++..+++. +..+++ +|+++.+++.+.++. .+.++++|+..++ ++ +++
T Consensus 37 ~VLDlGcG~G~~~~~l~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 114 (313)
T 3bgv_A 37 TVLDLGCGKGGDLLKWKKGRINKLVC--TDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC 114 (313)
T ss_dssp EEEEETCTTTTTHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred EEEEECCCCcHHHHHHHhcCCCEEEE--EeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence 8999999999999999876 568888 778888888876531 3678999998876 53 459
Q ss_pred cceEEecccccccc--chhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 380 MDLIHTTGFMDGWL--DMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 380 FDlVis~~~L~h~~--~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
||+|+++.++ ||. +......++.++.++|||||.|++.++.
T Consensus 115 fD~V~~~~~l-~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 115 FDICSCQFVC-HYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp EEEEEEETCG-GGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred EEEEEEecch-hhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 9999999999 664 4444679999999999999999998763
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=122.68 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=96.9
Q ss_pred ccccccCCcChHHHHHHHhcCC-CCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-CccEE-Ec
Q 012235 293 PKWVANRSVPVDFLISDILAIK-PGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-LIPLY-VT 368 (467)
Q Consensus 293 ~~W~~~~~~~~d~~I~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-~i~~~-~~ 368 (467)
..|+.+.+......+ +.+.+. ++. +|||+|||||.++..++++|. .|++ +|+++.|++.+.+.. .+... ..
T Consensus 63 ~~yvsrg~~Kl~~~l-~~~~~~~~g~--~vLDiGcGTG~~t~~L~~~ga~~V~a--VDvs~~mL~~a~r~~~rv~~~~~~ 137 (291)
T 3hp7_A 63 LRYVSRGGLKLEKAL-AVFNLSVEDM--ITIDIGASTGGFTDVMLQNGAKLVYA--VDVGTNQLVWKLRQDDRVRSMEQY 137 (291)
T ss_dssp CCSSSTTHHHHHHHH-HHTTCCCTTC--EEEEETCTTSHHHHHHHHTTCSEEEE--ECSSSSCSCHHHHTCTTEEEECSC
T ss_pred cccccchHHHHHHHH-HhcCCCcccc--EEEecCCCccHHHHHHHhCCCCEEEE--EECCHHHHHHHHHhCcccceeccc
Confidence 457774443333333 233333 333 899999999999999999875 8999 777788887754432 22222 22
Q ss_pred cCCCCc---cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE---ecccCCC----------------C
Q 012235 369 LNQRLP---FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID---RFFCNKK----------------D 426 (467)
Q Consensus 369 d~~~Lp---f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~---~~~~~~~----------------~ 426 (467)
++..++ ++..+||+|++..+++++ ..++.++.|+|||||.+++. .|-..++ .
T Consensus 138 ni~~l~~~~l~~~~fD~v~~d~sf~sl------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~ 211 (291)
T 3hp7_A 138 NFRYAEPVDFTEGLPSFASIDVSFISL------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKV 211 (291)
T ss_dssp CGGGCCGGGCTTCCCSEEEECCSSSCG------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHH
T ss_pred CceecchhhCCCCCCCEEEEEeeHhhH------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHH
Confidence 333333 234569999998887422 46899999999999999886 2211111 1
Q ss_pred HHHHHHHHHHcCceeeEEEEccC
Q 012235 427 LDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 427 ~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
.+.+.+++...||....+...+.
T Consensus 212 ~~~v~~~~~~~Gf~v~~~~~spi 234 (291)
T 3hp7_A 212 LETVTAFAVDYGFSVKGLDFSPI 234 (291)
T ss_dssp HHHHHHHHHHTTEEEEEEEECSS
T ss_pred HHHHHHHHHHCCCEEEEEEECCC
Confidence 23677888899999988887665
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-11 Score=109.62 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=92.3
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCC-
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFD- 377 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d- 377 (467)
.+.+.+.+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ ..+.+..+|... ++++
T Consensus 24 ~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~v~~--~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~ 98 (192)
T 1l3i_A 24 LIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVRRVYA--IDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKI 98 (192)
T ss_dssp HHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSSEEEE--EESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTS
T ss_pred HHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhcCEEEE--EECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccC
Confidence 344555666665 8999999999999999998888888 66778888777653 246778887665 3333
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
++||+|++..++.+ +..++.++.++|+|||.+++..+.. +....+.+.+++.||
T Consensus 99 ~~~D~v~~~~~~~~------~~~~l~~~~~~l~~gG~l~~~~~~~--~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 99 PDIDIAVVGGSGGE------LQEILRIIKDKLKPGGRIIVTAILL--ETKFEAMECLRDLGF 152 (192)
T ss_dssp CCEEEEEESCCTTC------HHHHHHHHHHTEEEEEEEEEEECBH--HHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCchHH------HHHHHHHHHHhcCCCcEEEEEecCc--chHHHHHHHHHHCCC
Confidence 68999999987732 3579999999999999999976542 234477888899998
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=118.91 Aligned_cols=118 Identities=11% Similarity=-0.033 Sum_probs=90.7
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC---CCccceEEecc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF---DNTMDLIHTTG 387 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~---d~sFDlVis~~ 387 (467)
.+|||||||+|..+..++.. +.+|++ +|+++.+++.++++ + .+.+++++++.++.. +++||+|++..
T Consensus 82 ~~vLDiG~G~G~~~i~la~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a 159 (249)
T 3g89_A 82 LRVLDLGTGAGFPGLPLKIVRPELELVL--VDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA 159 (249)
T ss_dssp CEEEEETCTTTTTHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence 38999999999999999876 678888 77888888777643 3 378899998887653 48999999976
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+. + +..++.++.++|||||+|++..-....++...+.+.++.+|+......
T Consensus 160 ~~----~---~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~ 210 (249)
T 3g89_A 160 VA----P---LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVL 210 (249)
T ss_dssp SC----C---HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEE
T ss_pred cC----C---HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEE
Confidence 43 1 357899999999999999886644334444467788888999765543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-11 Score=107.19 Aligned_cols=120 Identities=9% Similarity=0.086 Sum_probs=92.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~s 379 (467)
.+.+.+...++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ + .+.++++|... ++++++
T Consensus 26 ~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~ 100 (183)
T 2yxd_A 26 VSIGKLNLNKDD--VVVDVGCGSGGMTVEIAKRCKFVYA--IDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLE 100 (183)
T ss_dssp HHHHHHCCCTTC--EEEEESCCCSHHHHHHHTTSSEEEE--EECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCC
T ss_pred HHHHHcCCCCCC--EEEEeCCCCCHHHHHHHhcCCeEEE--EeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCC
Confidence 344555665665 8999999999999999998888998 66778888877654 2 47788888776 666789
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
||+|+++.+ . ....++.++.++ |||.+++.++.. +....+.+.+++.||..
T Consensus 101 ~D~i~~~~~-----~--~~~~~l~~~~~~--~gG~l~~~~~~~--~~~~~~~~~l~~~g~~~ 151 (183)
T 2yxd_A 101 FNKAFIGGT-----K--NIEKIIEILDKK--KINHIVANTIVL--ENAAKIINEFESRGYNV 151 (183)
T ss_dssp CSEEEECSC-----S--CHHHHHHHHHHT--TCCEEEEEESCH--HHHHHHHHHHHHTTCEE
T ss_pred CcEEEECCc-----c--cHHHHHHHHhhC--CCCEEEEEeccc--ccHHHHHHHHHHcCCeE
Confidence 999999987 1 136789999999 999999977432 23447888889998743
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=116.52 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=84.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHH----HHHHHcCCccEEEccCCCC----ccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFN----EMIALRGLIPLYVTLNQRL----PFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l----~~a~~rg~i~~~~~d~~~L----pf~d~sFDl 382 (467)
+.++. +|||+|||+|.++..+++.. ..|+| +|+++.|+ +.+..+..+.++++|+... ++ .++||+
T Consensus 55 ~~~g~--~VLDlGcGtG~~~~~la~~~~~~~V~g--vD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~-~~~fD~ 129 (210)
T 1nt2_A 55 LRGDE--RVLYLGAASGTTVSHLADIVDEGIIYA--VEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGI-VEKVDL 129 (210)
T ss_dssp CCSSC--EEEEETCTTSHHHHHHHHHTTTSEEEE--ECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTT-CCCEEE
T ss_pred CCCCC--EEEEECCcCCHHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhccc-ccceeE
Confidence 45555 89999999999999998863 57888 77887654 4444455577778887663 44 389999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc---CCCCHHHH----HHHHHHcCceeeEEEEc
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC---NKKDLDDY----MYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~---~~~~~~~~----~~~i~~~Gf~~l~W~~~ 447 (467)
|+++... + .....++.++.|+|||||.|++..... .....+++ .+.+++. |+.+.-...
T Consensus 130 V~~~~~~-~----~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 195 (210)
T 1nt2_A 130 IYQDIAQ-K----NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSL 195 (210)
T ss_dssp EEECCCS-T----THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred EEEeccC-h----hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecC
Confidence 9998422 2 223456999999999999999974221 22233332 2235666 877765544
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=113.49 Aligned_cols=130 Identities=16% Similarity=0.142 Sum_probs=91.4
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHH--------HcC--CccEEEccCCCCccCC
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIA--------LRG--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~--------~rg--~i~~~~~d~~~Lpf~d 377 (467)
.+...++. +|||+|||+|.++..+++. +..|++ +|+++.|++.++ ..+ .+.++++|+..+|+.+
T Consensus 22 ~l~~~~~~--~vLDiGcG~G~~~~~la~~~p~~~v~g--vD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 97 (218)
T 3mq2_A 22 QLRSQYDD--VVLDVGTGDGKHPYKVARQNPSRLVVA--LDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS 97 (218)
T ss_dssp HHHTTSSE--EEEEESCTTCHHHHHHHHHCTTEEEEE--EESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC
T ss_pred HhhccCCC--EEEEecCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC
Confidence 34455555 8999999999999999998 677888 777788777532 122 3789999999999887
Q ss_pred CccceEEeccccc-----cccchhhHHHHHHHHHhccCCCcEEEEEecccC------------CCC----HHHHHHHHHH
Q 012235 378 NTMDLIHTTGFMD-----GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN------------KKD----LDDYMYMFLQ 436 (467)
Q Consensus 378 ~sFDlVis~~~L~-----h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~------------~~~----~~~~~~~i~~ 436 (467)
++ |.|+...... |..+. ..++.++.|+|||||.+++...... ... .+.+.+.+..
T Consensus 98 ~~-d~v~~~~~~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (218)
T 3mq2_A 98 GV-GELHVLMPWGSLLRGVLGSS---PEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAE 173 (218)
T ss_dssp CE-EEEEEESCCHHHHHHHHTSS---SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHH
T ss_pred CC-CEEEEEccchhhhhhhhccH---HHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHH
Confidence 77 8777443221 22232 5799999999999999999532110 001 1247778899
Q ss_pred cCceeeEEEEc
Q 012235 437 FRYKKHKWAIS 447 (467)
Q Consensus 437 ~Gf~~l~W~~~ 447 (467)
.||....-...
T Consensus 174 aGf~i~~~~~~ 184 (218)
T 3mq2_A 174 AGWKLADCRYL 184 (218)
T ss_dssp TTEEEEEEEEE
T ss_pred cCCCceeeecc
Confidence 99977665443
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=112.74 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=91.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHH----HHHHHcCCccEEEccCCCCcc---CCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFN----EMIALRGLIPLYVTLNQRLPF---FDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l----~~a~~rg~i~~~~~d~~~Lpf---~d~sFDl 382 (467)
++++. +|||+|||+|.++..+++. ...|++ +|+++.|+ +.+.++.++.++++|+..... ..++||+
T Consensus 74 l~~g~--~VLDlG~GtG~~t~~la~~v~~~G~V~a--vD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 74 IRKGT--KVLYLGAASGTTISHVSDIIELNGKAYG--VEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHHTTTSEEEE--EECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred CCCCC--EEEEEeecCCHHHHHHHHHhCCCCEEEE--EECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEE
Confidence 56676 9999999999999999876 347888 66777664 445556668888999876432 2468999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc-------CCCCHHHHHHHHHHcCceeeEEEEccC-CCCce
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC-------NKKDLDDYMYMFLQFRYKKHKWAISPK-SKDEV 454 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~-------~~~~~~~~~~~i~~~Gf~~l~W~~~~k-~~dev 454 (467)
|++..+. .+. .+.+...+.++|||||.|+++.... +.+..+...+.++..||+.+.-..... .++..
T Consensus 150 I~~d~a~---~~~--~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~ 224 (232)
T 3id6_C 150 LYVDIAQ---PDQ--TDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHA 224 (232)
T ss_dssp EEECCCC---TTH--HHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCE
T ss_pred EEecCCC---hhH--HHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceE
Confidence 9998765 222 2344556677999999999874221 122233566677788998886554432 44544
Q ss_pred EEE
Q 012235 455 YLS 457 (467)
Q Consensus 455 yl~ 457 (467)
.+.
T Consensus 225 ~v~ 227 (232)
T 3id6_C 225 IVL 227 (232)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-11 Score=112.10 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=78.8
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc--cCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP--FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp--f~d~sFDlVis~~~L~ 390 (467)
+|||+|||+|.++..+++++. .|++ +|+++.+++.++++ + .+.++++|+..++ +++++||+|+++..+
T Consensus 47 ~vLDlgcG~G~~~~~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~- 123 (189)
T 3p9n_A 47 AVLDLYAGSGALGLEALSRGAASVLF--VESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY- 123 (189)
T ss_dssp EEEEETCTTCHHHHHHHHTTCSEEEE--EECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT-
T ss_pred EEEEeCCCcCHHHHHHHHCCCCeEEE--EECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC-
Confidence 899999999999998888765 6888 77778888877653 3 4789999987764 447899999999887
Q ss_pred cccchhhHHHHHHHHHh--ccCCCcEEEEEeccc
Q 012235 391 GWLDMLLLDFILFDWDR--ILRPGGLLWIDRFFC 422 (467)
Q Consensus 391 h~~~~~~l~~~L~el~R--vLKPGG~LiI~~~~~ 422 (467)
++.. .....++.++.+ +|+|||.+++.+...
T Consensus 124 ~~~~-~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 124 NVDS-ADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TSCH-HHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred Ccch-hhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 4421 225789999999 999999999976543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.9e-12 Score=130.07 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=85.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHH-----------c----CCccEEEcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVT-IVSTALNLGAPFNEMIAL-----------R----GLIPLYVTL 369 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~-----------r----g~i~~~~~d 369 (467)
+.+.+.+.+++ +|||||||+|.++..++.. +.. |+| +|+++.+++.+.+ . +.+.++++|
T Consensus 165 il~~l~l~~gd--~VLDLGCGtG~l~l~lA~~~g~~kVvG--IDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 165 MIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYG--VEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHCCCTTC--EEEEESCTTSHHHHHHHHHCCCSEEEE--EECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 33445677777 9999999999999998864 554 888 6777766665543 1 348899999
Q ss_pred CCCCccCC--CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC
Q 012235 370 NQRLPFFD--NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK 425 (467)
Q Consensus 370 ~~~Lpf~d--~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~ 425 (467)
+..+|+.+ ..||+|+++..+ ++.+ +...|.++.|+|||||.|++.+.+.+.+
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~-F~pd---l~~aL~Ei~RvLKPGGrIVssE~f~p~d 294 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFA-FGPE---VDHQLKERFANMKEGGRIVSSKPFAPLN 294 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTT-CCHH---HHHHHHHHHTTSCTTCEEEESSCSSCTT
T ss_pred ccCCccccccCCccEEEEcccc-cCch---HHHHHHHHHHcCCCCcEEEEeecccCCC
Confidence 99998754 579999998776 4433 4688999999999999999988777543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-11 Score=134.73 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=88.1
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc----------C--CccEEEccCCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR----------G--LIPLYVTLNQR 372 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r----------g--~i~~~~~d~~~ 372 (467)
.+.+...++. +|||||||+|.++..|++.+ ..|+| +|+++.|++.++++ + .+.++++|+..
T Consensus 714 LelL~~~~g~--rVLDVGCGTG~lai~LAr~g~p~a~VtG--VDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d 789 (950)
T 3htx_A 714 LKHIRESSAS--TLVDFGCGSGSLLDSLLDYPTSLQTIIG--VDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE 789 (950)
T ss_dssp HHHHHHSCCS--EEEEETCSSSHHHHHHTSSCCCCCEEEE--EESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred HHHhcccCCC--EEEEECCCCCHHHHHHHHhCCCCCeEEE--EECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence 3444444555 89999999999999999987 68888 77888999888661 2 37899999999
Q ss_pred CccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 373 LPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 373 Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+++.+++||+|++..+++|+.++. ...++.++.|+|||| .+++.++
T Consensus 790 Lp~~d~sFDlVV~~eVLeHL~dp~-l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 790 FDSRLHDVDIGTCLEVIEHMEEDQ-ACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp CCTTSCSCCEEEEESCGGGSCHHH-HHHHHHHHHHTTCCS-EEEEEEC
T ss_pred CCcccCCeeEEEEeCchhhCChHH-HHHHHHHHHHHcCCC-EEEEEec
Confidence 999999999999999997776653 457899999999999 7777764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.4e-12 Score=121.56 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=85.1
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHcC----C-ccEEEccCCCC--ccCCCccceEEe
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALRG----L-IPLYVTLNQRL--PFFDNTMDLIHT 385 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~rg----~-i~~~~~d~~~L--pf~d~sFDlVis 385 (467)
.+|. +|||||||+|..+..+++.+ ..+++ +|+++.+++.++++. . +.++.++++.+ ++++++||.|+.
T Consensus 59 ~~G~--rVLdiG~G~G~~~~~~~~~~~~~v~~--id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 59 SKGG--RVLEVGFGMAIAASKVQEAPIDEHWI--IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTCE--EEEEECCTTSHHHHHHTTSCEEEEEE--EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred cCCC--eEEEECCCccHHHHHHHHhCCcEEEE--EeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence 3444 89999999999999999874 56777 778899999887642 2 56777776544 477899999985
Q ss_pred c-----cccccccchhhHHHHHHHHHhccCCCcEEEEEecccC-------CCC-----HHHHHHHHHHcCcee
Q 012235 386 T-----GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------KKD-----LDDYMYMFLQFRYKK 441 (467)
Q Consensus 386 ~-----~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------~~~-----~~~~~~~i~~~Gf~~ 441 (467)
. ..+.|+.+ .+.++.++.|+|||||.|++.+.... .+. .+.+...+.+.||+.
T Consensus 135 D~~~~~~~~~~~~~---~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~ 204 (236)
T 3orh_A 135 DTYPLSEETWHTHQ---FNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp CCCCCBGGGTTTHH---HHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCG
T ss_pred eeeecccchhhhcc---hhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeE
Confidence 3 33334433 36899999999999999988542211 011 114445667788864
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-11 Score=116.11 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=94.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-----C--CccEEEccCCCCccC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-----g--~i~~~~~d~~~Lpf~ 376 (467)
+...+.+.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.++++ + .+.+..+|+...+++
T Consensus 88 ~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~--~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 88 MVTLLDLAPGM--RVLEAGTGSGGLTLFLARAVGEKGLVES--YEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHcCCCCCC--EEEEECCCcCHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 44556666776 8999999999999999987 578888 67778888777654 3 478889998888787
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
+++||+|++.. .+. ..++.++.++|+|||.+++..+.. +....+.+.+++.||..+
T Consensus 164 ~~~~D~v~~~~-----~~~---~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~gf~~~ 219 (258)
T 2pwy_A 164 EAAYDGVALDL-----MEP---WKVLEKAALALKPDRFLVAYLPNI--TQVLELVRAAEAHPFRLE 219 (258)
T ss_dssp TTCEEEEEEES-----SCG---GGGHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHTTTTEEEE
T ss_pred CCCcCEEEECC-----cCH---HHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceE
Confidence 88999999842 223 368999999999999999977543 233466677777888653
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=123.43 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=79.1
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+...++. +|||||||+|.++..+++.|. .|+++|+ ++ +++.++++ ..+.++.+|+..+++++++|
T Consensus 58 ~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~gvD~--s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 58 QNPHIFKDK--VVLDVGCGTGILSMFAAKAGAKKVLGVDQ--SE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HCGGGTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEES--ST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred hhhhhcCCC--EEEEeeccCcHHHHHHHHcCCCEEEEECh--HH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 334445555 899999999999999999875 8999555 44 66666542 34789999999999888999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
|+|++......+.....+..++.++.|+|||||.++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999998743233333335789999999999999987
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-11 Score=116.21 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=93.1
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceEEecc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+.++. +|||+|||+|.++..+++.|..|++ +|+++.+++.++++ +. +.+..++.... +++++||+|+++.
T Consensus 118 ~~~~~--~VLDiGcG~G~l~~~la~~g~~v~g--vDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~ 192 (254)
T 2nxc_A 118 LRPGD--KVLDLGTGSGVLAIAAEKLGGKALG--VDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANL 192 (254)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEEC
T ss_pred cCCCC--EEEEecCCCcHHHHHHHHhCCeEEE--EECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECC
Confidence 34555 8999999999999999999888888 56667777766543 33 67778776552 4567899999987
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
.. +. +..++.++.++|||||+++++.+... ..+.+.+.+++.||+.+....
T Consensus 193 ~~-~~-----~~~~l~~~~~~LkpgG~lils~~~~~--~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 193 YA-EL-----HAALAPRYREALVPGGRALLTGILKD--RAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp CH-HH-----HHHHHHHHHHHEEEEEEEEEEEEEGG--GHHHHHHHHHHTTCEEEEEEE
T ss_pred cH-HH-----HHHHHHHHHHHcCCCCEEEEEeeccC--CHHHHHHHHHHCCCEEEEEec
Confidence 65 21 35789999999999999999776543 355788899999998887643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=112.73 Aligned_cols=102 Identities=16% Similarity=0.059 Sum_probs=82.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++.+|....+..+++|
T Consensus 69 ~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 69 MTELLELTPQS--RVLEIGTGSGYQTAILAHLVQHVCS--VERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHhcCCCCCC--EEEEEcCCCCHHHHHHHHhCCEEEE--EecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 44555666666 8999999999999999999889999 67778888877653 3 3788899988877667899
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|+|++..++.|+.+ ++.++|||||++++....
T Consensus 145 D~i~~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence 99999999855443 578999999999996643
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=124.54 Aligned_cols=99 Identities=15% Similarity=0.239 Sum_probs=78.2
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEEe
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.++. +|||+|||+|.++..+++.|. .|+|+| ++ ++++.+++ .+ .+.++++++..+++++++||+|++
T Consensus 65 ~~~~--~VLDvGcG~G~~~~~la~~g~~~v~gvD--~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis 139 (349)
T 3q7e_A 65 FKDK--VVLDVGSGTGILCMFAAKAGARKVIGIE--CS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS 139 (349)
T ss_dssp HTTC--EEEEESCTTSHHHHHHHHTTCSEEEEEE--CS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred CCCC--EEEEEeccchHHHHHHHHCCCCEEEEEC--cH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEE
Confidence 3454 899999999999999999965 899955 45 36666643 23 278999999999998899999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
.....+......++.++.++.|+|||||.++.
T Consensus 140 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 140 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 77654443334467899999999999999875
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-12 Score=124.82 Aligned_cols=126 Identities=12% Similarity=0.045 Sum_probs=91.4
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEE
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
...++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++++|+..++ ++++||+|+
T Consensus 75 ~~~~~~--~vLD~gcG~G~~~~~la~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~ 149 (241)
T 3gdh_A 75 QSFKCD--VVVDAFCGVGGNTIQFALTGMRVIA--IDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVF 149 (241)
T ss_dssp HHSCCS--EEEETTCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEE
T ss_pred hccCCC--EEEECccccCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEE
Confidence 333555 8999999999999999999989998 77788888877643 3 4789999988877 578999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEe----------cccCCCCHHHHHHHHHHcCceeeEEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR----------FFCNKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~----------~~~~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
++.++++.... ...+.++.++|+|||.+++.. +.....+.+.+..++..-|...+...
T Consensus 150 ~~~~~~~~~~~---~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~ 217 (241)
T 3gdh_A 150 LSPPWGGPDYA---TAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQN 217 (241)
T ss_dssp ECCCCSSGGGG---GSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEE
T ss_pred ECCCcCCcchh---hhHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEeh
Confidence 99988554443 347788999999999977643 11122244455555555555444443
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.2e-11 Score=117.90 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=96.8
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPF 375 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf 375 (467)
..+..++...++. +|||+|||+|..+..+++. +..|++ +|+++.+++.+.++ + .+.++++|+..++.
T Consensus 108 ~l~~~~l~~~~g~--~VLDlg~G~G~~t~~la~~~~~~~~v~a--vD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~ 183 (315)
T 1ixk_A 108 MYPPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYA--FDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE 183 (315)
T ss_dssp HHHHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEE--ECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG
T ss_pred HHHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEE--EcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc
Confidence 3455667777776 8999999999999999975 367888 77888888777653 3 36788889888776
Q ss_pred CCCccceEEeccc------ccccc-------ch------hhHHHHHHHHHhccCCCcEEEEEecccCCC-CHHHHHHHHH
Q 012235 376 FDNTMDLIHTTGF------MDGWL-------DM------LLLDFILFDWDRILRPGGLLWIDRFFCNKK-DLDDYMYMFL 435 (467)
Q Consensus 376 ~d~sFDlVis~~~------L~h~~-------~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-~~~~~~~~i~ 435 (467)
.+++||+|++... +.+.. .. .....++.++.++|||||.+++++.....+ +.+.+...++
T Consensus 184 ~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~ 263 (315)
T 1ixk_A 184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALD 263 (315)
T ss_dssp GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHh
Confidence 6778999998532 21111 10 011478999999999999999988755443 3335666778
Q ss_pred HcCceeeE
Q 012235 436 QFRYKKHK 443 (467)
Q Consensus 436 ~~Gf~~l~ 443 (467)
+.||+.+.
T Consensus 264 ~~~~~~~~ 271 (315)
T 1ixk_A 264 NFDVELLP 271 (315)
T ss_dssp HSSEEEEC
T ss_pred cCCCEEec
Confidence 88876543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-11 Score=122.40 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=95.1
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
.+|||||||+|.++..++++ +.++++ +|+ +.+++.+++...+.++.+|+.. +++ .||+|++..+++||.+..
T Consensus 190 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p--~~D~v~~~~~lh~~~d~~ 263 (352)
T 1fp2_A 190 ESIVDVGGGTGTTAKIICETFPKLKCIV--FDR-PQVVENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKD 263 (352)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHH
T ss_pred ceEEEeCCCccHHHHHHHHHCCCCeEEE--eeC-HHHHhhcccCCCcEEEeccccC-CCC--CccEEEeehhhccCCHHH
Confidence 38999999999999999987 567777 666 7787777655558899999865 554 399999999997786652
Q ss_pred hHHHHHHHHHhccCC---CcEEEEEecccCCC-------------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 397 LLDFILFDWDRILRP---GGLLWIDRFFCNKK-------------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 397 ~l~~~L~el~RvLKP---GG~LiI~~~~~~~~-------------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
...+++++.++||| ||++++.++..+.. ..+++.+++++.||+.++...
T Consensus 264 -~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 264 -CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp -HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred -HHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 45899999999999 99999987654321 124788889999998876543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=113.19 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=90.7
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++++|.... +++++||+|+++.....
T Consensus 112 ~vLDlG~GsG~~~~~la~~~~~~~v~~--vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~ 188 (276)
T 2b3t_A 112 RILDLGTGTGAIALALASERPDCEIIA--VDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYID 188 (276)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTSEEEE--ECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCBC
T ss_pred EEEEecCCccHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCCCC
Confidence 8999999999999999965 678888 78888888877653 3 377888887663 44678999999854321
Q ss_pred c------------cc----------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEE
Q 012235 392 W------------LD----------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 392 ~------------~~----------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
. .+ ......++.++.++|||||++++... ....+.+.+++++.||..+....
T Consensus 189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~l~~~Gf~~v~~~~ 262 (276)
T 2b3t_A 189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG---WQQGEAVRQAFILAGYHDVETCR 262 (276)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC---SSCHHHHHHHHHHTTCTTCCEEE
T ss_pred ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---chHHHHHHHHHHHCCCcEEEEEe
Confidence 1 11 02346889999999999999998643 23455788889999998776543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-10 Score=117.56 Aligned_cols=124 Identities=14% Similarity=0.156 Sum_probs=96.9
Q ss_pred CceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCCccCCCccceEEecccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
.++|+|||||+|.++..++++...+.++..|. +.+++.++++ +.+.++.+|+...|.+ .+|+|++..++++
T Consensus 180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh~ 256 (353)
T 4a6d_A 180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVLHD 256 (353)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSGGG
T ss_pred CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeeccc
Confidence 34899999999999999999855544444665 5677776653 3488999998766543 4799999999987
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-----------------------CHHHHHHHHHHcCceeeEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-----------------------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-----------------------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
|.++. ...+|+++.++|+|||.++|.+...+.+ ..++|.+++++.||+.++..
T Consensus 257 ~~d~~-~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~ 332 (353)
T 4a6d_A 257 WADGK-CSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFK 332 (353)
T ss_dssp SCHHH-HHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHH-HHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 87664 4688999999999999999988765432 23478899999999988754
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-11 Score=119.91 Aligned_cols=99 Identities=8% Similarity=0.110 Sum_probs=78.8
Q ss_pred HhcCCCCCCceEEEECCCccHHHHH-Hhh-CCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAAR-MRE-QNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~-La~-~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFD 381 (467)
++.+.++. +|||||||+|.++.. +++ .|.+|++ +|+++.|++.|+++ + .+.++++|+..++ +++||
T Consensus 117 la~l~~g~--rVLDIGcG~G~~ta~~lA~~~ga~V~g--IDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FD 190 (298)
T 3fpf_A 117 LGRFRRGE--RAVFIGGGPLPLTGILLSHVYGMRVNV--VEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFD 190 (298)
T ss_dssp HTTCCTTC--EEEEECCCSSCHHHHHHHHTTCCEEEE--EESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCS
T ss_pred HcCCCCcC--EEEEECCCccHHHHHHHHHccCCEEEE--EECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcC
Confidence 56777777 999999999977644 454 3888999 77788888888654 4 4789999988876 78999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|++.... .+ ...++.++.|+|||||.|++...
T Consensus 191 vV~~~a~~---~d---~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 191 VLMVAALA---EP---KRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEEECTTC---SC---HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEECCCc---cC---HHHHHHHHHHHcCCCcEEEEEcC
Confidence 99986542 22 36899999999999999999764
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.9e-11 Score=116.61 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=93.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||+|||+|.++..+++.+.. |++ +|+++.+++.++++ + .+.++++|+..++. +++||+|+
T Consensus 123 ~~~~~--~VLDlgcG~G~~~~~la~~~~~~V~~--vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi 197 (278)
T 2frn_A 123 AKPDE--LVVDMFAGIGHLSLPIAVYGKAKVIA--IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL 197 (278)
T ss_dssp CCTTC--EEEETTCTTTTTHHHHHHHTCCEEEE--ECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred CCCCC--EEEEecccCCHHHHHHHHhCCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEE
Confidence 34465 8999999999999999998764 888 88888888877653 3 26688999988876 78999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc----CCCCHHHHHHHHHHcCceeeE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC----NKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~----~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
++.... ...++.++.++|||||.+++.++.. ..+..+.+.+.+++.|+....
T Consensus 198 ~~~p~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 198 MGYVVR-------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ECCCSS-------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ECCchh-------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 975531 1368899999999999999977653 234455778888998886543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=117.27 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=76.7
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCC-c--cCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRL-P--FFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~L-p--f~d~sFDlVis~~~ 388 (467)
+|||||||+|.++..+++. +..|+| +|+++.+++.+.++ + .+.++.+|+..+ + +++++||.|++++.
T Consensus 37 ~vLDiGcG~G~~~~~lA~~~p~~~v~g--iD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~ 114 (218)
T 3dxy_A 37 VTLEIGFGMGASLVAMAKDRPEQDFLG--IEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP 114 (218)
T ss_dssp EEEEESCTTCHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred eEEEEeeeChHHHHHHHHHCCCCeEEE--EEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence 8999999999999999987 456888 88889888877543 3 378888998774 4 67899999999876
Q ss_pred cccccchhhH------HHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDMLLL------DFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~~l------~~~L~el~RvLKPGG~LiI~~ 419 (467)
. .|...... ..++.++.|+|||||.|++.+
T Consensus 115 ~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 115 D-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp C-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 5 44433211 259999999999999999965
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=113.57 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=77.5
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCC-----CccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFD-----NTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d-----~sFDlVis~~ 387 (467)
+|||+|||+|.++..+++. +..+++ +|+++.+++.++++ + .+.++++|+.. ++++ ++||+|+++.
T Consensus 33 ~vLDiG~G~G~~~~~l~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~np 109 (215)
T 4dzr_A 33 RVIDVGTGSGCIAVSIALACPGVSVTA--VDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVSNP 109 (215)
T ss_dssp EEEEEESSBCHHHHHHHHHCTTEEEEE--EECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEECC
T ss_pred EEEEecCCHhHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEECC
Confidence 8999999999999999998 557887 66777777777643 2 35677777666 5555 8999999976
Q ss_pred cccccc------chh-----------------hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH--HcCceee
Q 012235 388 FMDGWL------DML-----------------LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL--QFRYKKH 442 (467)
Q Consensus 388 ~L~h~~------~~~-----------------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~--~~Gf~~l 442 (467)
.+.+.. ... .+..++.++.++|||||++++.... ....+.+.+.++ +.||..+
T Consensus 110 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 110 PYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG--HNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT--TSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC--CccHHHHHHHHHHhhcCCceE
Confidence 552211 110 0157889999999999994443332 334557788888 8888777
Q ss_pred EEEEc
Q 012235 443 KWAIS 447 (467)
Q Consensus 443 ~W~~~ 447 (467)
.....
T Consensus 188 ~~~~~ 192 (215)
T 4dzr_A 188 RKVKD 192 (215)
T ss_dssp CEEEC
T ss_pred EEEEe
Confidence 65433
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-11 Score=112.28 Aligned_cols=123 Identities=16% Similarity=0.300 Sum_probs=87.6
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCC-C
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQR-L 373 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~-L 373 (467)
..+..++...++. +|||||||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++++|+.. +
T Consensus 48 ~~l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l 123 (221)
T 3u81_A 48 QIMDAVIREYSPS--LVLELGAYCGYSAVRMARLLQPGARLLT--MEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI 123 (221)
T ss_dssp HHHHHHHHHHCCS--EEEEECCTTSHHHHHHHTTSCTTCEEEE--EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG
T ss_pred HHHHHHHHhcCCC--EEEEECCCCCHHHHHHHHhCCCCCEEEE--EeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH
Confidence 3455555554554 8999999999999999984 678888 67778888777652 3 37888998644 3
Q ss_pred ccCC-----CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc
Q 012235 374 PFFD-----NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF 437 (467)
Q Consensus 374 pf~d-----~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~ 437 (467)
+... ++||+|++.....++.+. ..++..+ ++|||||.+++.+..... ...+.+.+...
T Consensus 124 ~~~~~~~~~~~fD~V~~d~~~~~~~~~---~~~~~~~-~~LkpgG~lv~~~~~~~~--~~~~~~~l~~~ 186 (221)
T 3u81_A 124 PQLKKKYDVDTLDMVFLDHWKDRYLPD---TLLLEKC-GLLRKGTVLLADNVIVPG--TPDFLAYVRGS 186 (221)
T ss_dssp GGTTTTSCCCCCSEEEECSCGGGHHHH---HHHHHHT-TCCCTTCEEEESCCCCCC--CHHHHHHHHHC
T ss_pred HHHHHhcCCCceEEEEEcCCcccchHH---HHHHHhc-cccCCCeEEEEeCCCCcc--hHHHHHHHhhC
Confidence 3322 789999998877555433 3567777 999999999997766433 23455555543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-11 Score=117.44 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=91.4
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-----C--CccEEEccCCCCccCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-----G--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-----g--~i~~~~~d~~~Lpf~d 377 (467)
...+.+.++. +|||+|||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|+.. ++++
T Consensus 103 ~~~~~~~~~~--~VLD~G~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~ 177 (275)
T 1yb2_A 103 IMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTV--VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISD 177 (275)
T ss_dssp ---CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEE--ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCS
T ss_pred HHHcCCCCcC--EEEEecCCCCHHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcC
Confidence 3444566665 8999999999999999987 678888 77888888877653 3 37788888877 6667
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
++||+|++. +.+. ..++.++.++|||||.+++.+... +..+.+.+.++..||..+..
T Consensus 178 ~~fD~Vi~~-----~~~~---~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 178 QMYDAVIAD-----IPDP---WNHVQKIASMMKPGSVATFYLPNF--DQSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp CCEEEEEEC-----CSCG---GGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHHHSGGGTEEEEEE
T ss_pred CCccEEEEc-----CcCH---HHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCeEEEE
Confidence 899999983 3333 478999999999999999977543 12346667778889876544
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.5e-11 Score=116.92 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=80.9
Q ss_pred CceEEEECCCc---cHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCc-----------cCC
Q 012235 318 TRIGLDFGVGT---GTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLP-----------FFD 377 (467)
Q Consensus 318 ~r~VLDIGCGt---G~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lp-----------f~d 377 (467)
.++|||||||+ |.++..+.+. +.+|++ +|+++.|++.++++ +.+.++.+|+.+.+ ++.
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~--vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVY--VDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEE--EESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEE--EECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 34899999999 9888776654 678888 67779999888764 35889999986532 222
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+||+|++..+++|+.+. ....++.++.++|||||+|++.++..
T Consensus 156 ~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 589999999999555553 46799999999999999999988765
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.8e-11 Score=111.75 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=80.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+.+.+.+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.+.++. .+.++.+|.......+++||+
T Consensus 62 ~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 137 (231)
T 1vbf_A 62 MLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVS--VEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (231)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--EESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHhcCCCCCC--EEEEEcCCCCHHHHHHHHHcCEEEE--EeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccE
Confidence 44455566665 8999999999999999998888888 677788888887652 478888888763334689999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|++..+++|+. .++.++|||||.+++....
T Consensus 138 v~~~~~~~~~~---------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 138 VVVWATAPTLL---------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEESSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred EEECCcHHHHH---------HHHHHHcCCCcEEEEEEcC
Confidence 99999995543 3688999999999997643
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.7e-11 Score=112.94 Aligned_cols=124 Identities=12% Similarity=0.106 Sum_probs=81.9
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCC-HHHHHHH---HH----cC--CccEEEccCCCCccC-CCccceEEec
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLG-APFNEMI---AL----RG--LIPLYVTLNQRLPFF-DNTMDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS-~~~l~~a---~~----rg--~i~~~~~d~~~Lpf~-d~sFDlVis~ 386 (467)
+|||||||+|.++..++++ +..|+| +|+| +.|++.+ ++ .+ .+.++++++..+|.. .+.+|.|+++
T Consensus 27 ~vLDiGCG~G~~~~~la~~~~~~~v~G--vD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~ 104 (225)
T 3p2e_A 27 VHIDLGTGDGRNIYKLAINDQNTFYIG--IDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISIL 104 (225)
T ss_dssp EEEEETCTTSHHHHHHHHTCTTEEEEE--ECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEE
T ss_pred EEEEEeccCcHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEe
Confidence 8999999999999999954 667787 7788 6676665 32 23 367889999888632 2445555554
Q ss_pred cccc----cccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------CCHH-----HHHHHHHHcCceeeEE
Q 012235 387 GFMD----GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------KDLD-----DYMYMFLQFRYKKHKW 444 (467)
Q Consensus 387 ~~L~----h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------~~~~-----~~~~~i~~~Gf~~l~W 444 (467)
+... |+... ...++.++.|+|||||.|++....... .... ++.+.+++.||.....
T Consensus 105 ~~~~~~~~~~~~~--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~ 182 (225)
T 3p2e_A 105 FPWGTLLEYVIKP--NRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDV 182 (225)
T ss_dssp SCCHHHHHHHHTT--CHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEE
T ss_pred CCCcHHhhhhhcc--hHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeee
Confidence 4321 11111 146899999999999999983211110 0111 2778889999987655
Q ss_pred EEc
Q 012235 445 AIS 447 (467)
Q Consensus 445 ~~~ 447 (467)
...
T Consensus 183 ~~~ 185 (225)
T 3p2e_A 183 KEL 185 (225)
T ss_dssp EEE
T ss_pred eec
Confidence 433
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=123.71 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=78.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
..++. +|||+|||+|.++..+++.|. .|+++| ++ .|++.+++ .+ .+.++++|+..++++ ++||+|+
T Consensus 61 ~~~~~--~VLDlGcGtG~ls~~la~~g~~~V~gvD--~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv 134 (376)
T 3r0q_C 61 HFEGK--TVLDVGTGSGILAIWSAQAGARKVYAVE--AT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVII 134 (376)
T ss_dssp TTTTC--EEEEESCTTTHHHHHHHHTTCSEEEEEE--SS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEE
T ss_pred cCCCC--EEEEeccCcCHHHHHHHhcCCCEEEEEc--cH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEE
Confidence 34444 899999999999999999987 899955 55 56665543 23 378999999998876 8999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+....+.......++.++.++.++|||||.+++..
T Consensus 135 ~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 135 SEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp ECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 97755333333335789999999999999997743
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.8e-11 Score=107.80 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=79.0
Q ss_pred HHhc-CCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCC-CccCCC
Q 012235 309 DILA-IKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQR-LPFFDN 378 (467)
Q Consensus 309 ~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~-Lpf~d~ 378 (467)
+.+. ..++. +|||+|||+|.++..+++++ ..|++ +|+++.+++.++++ + .+.++.+|+.. ++..++
T Consensus 24 ~~l~~~~~~~--~vLDlGcG~G~~~~~l~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 24 NMIGPYFNGG--RVLDLFAGSGGLAIEAVSRGMSAAVL--VEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHCSCCCSC--EEEEETCTTCHHHHHHHHTTCCEEEE--ECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHhhcCCC--eEEEeCCCCCHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 3343 44555 89999999999999999885 57888 77888888887653 2 36788888766 454567
Q ss_pred ccceEEeccccccccchhhHHHHHHHHH--hccCCCcEEEEEeccc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWD--RILRPGGLLWIDRFFC 422 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~--RvLKPGG~LiI~~~~~ 422 (467)
+||+|+++..+ +... .+..+..+. ++|+|||.+++.....
T Consensus 100 ~fD~i~~~~~~-~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 100 RFDLVFLDPPY-AKET---IVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CEEEEEECCSS-HHHH---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCEEEECCCC-Ccch---HHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 89999998776 3222 346677776 9999999999976544
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.7e-11 Score=119.53 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=78.5
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccce
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+...++. +|||+|||+|.++..+++.|. .|+++|++ ++++.+++ .+ .+.++.+|+..+++++++||+
T Consensus 34 ~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~~vD~s---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 108 (328)
T 1g6q_1 34 KDLFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGVDMS---SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDI 108 (328)
T ss_dssp HHHHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEEESS---THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEE
T ss_pred HhhcCCC--EEEEecCccHHHHHHHHHCCCCEEEEEChH---HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccE
Confidence 3444555 899999999999999999875 89996554 36665543 23 378999999999888889999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
|++.....++.....++.++.++.|+|||||.++.
T Consensus 109 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 99986544433333457899999999999999874
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.8e-11 Score=112.34 Aligned_cols=123 Identities=16% Similarity=0.242 Sum_probs=93.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf 375 (467)
.+...+.+.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 84 ~i~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~--~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 158 (255)
T 3mb5_A 84 LIVAYAGISPGD--FIVEAGVGSGALTLFLANIVGPEGRVVS--YEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-I 158 (255)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-C
T ss_pred HHHHhhCCCCCC--EEEEecCCchHHHHHHHHHhCCCeEEEE--EecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-c
Confidence 344556666766 8999999999999999988 678888 77888888877654 3 277888887754 6
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC--ceeeE
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR--YKKHK 443 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G--f~~l~ 443 (467)
++++||+|+++.. +. ..++.++.++|||||.+++..+.. +....+.+.+++.| |..+.
T Consensus 159 ~~~~~D~v~~~~~-----~~---~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~g~~f~~~~ 218 (255)
T 3mb5_A 159 EEENVDHVILDLP-----QP---ERVVEHAAKALKPGGFFVAYTPCS--NQVMRLHEKLREFKDYFMKPR 218 (255)
T ss_dssp CCCSEEEEEECSS-----CG---GGGHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHTGGGBSCCE
T ss_pred CCCCcCEEEECCC-----CH---HHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCccccE
Confidence 6788999998532 22 368999999999999999876433 23446778888888 86554
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.6e-11 Score=112.22 Aligned_cols=97 Identities=10% Similarity=0.088 Sum_probs=75.6
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc--------CCccEEEccCCCCcc--CCCc-cceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR--------GLIPLYVTLNQRLPF--FDNT-MDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r--------g~i~~~~~d~~~Lpf--~d~s-FDlVis~~ 387 (467)
+|||+|||+|.++..++.++. .|++ +|+++.+++.++++ ..+.++.+|+..+.. .+++ ||+|+++.
T Consensus 56 ~vLDlGcGtG~~~~~~~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 56 ECLDGFAGSGSLGFEALSRQAKKVTF--LELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred eEEEcCCccCHHHHHHHHccCCEEEE--EECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 899999999999998877764 7888 78888898887653 246788888766532 3678 99999988
Q ss_pred ccccccchhhHHHHHHHH--HhccCCCcEEEEEeccc
Q 012235 388 FMDGWLDMLLLDFILFDW--DRILRPGGLLWIDRFFC 422 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el--~RvLKPGG~LiI~~~~~ 422 (467)
.+ +... ...++.++ .|+|||||.+++.....
T Consensus 134 ~~-~~~~---~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 134 PF-HFNL---AEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CS-SSCH---HHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CC-CCcc---HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 85 4322 36788888 77899999999976543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-11 Score=117.32 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=76.0
Q ss_pred ceEEEECCCccH----HHHHHhhC------CCEEEEEecCCCHHHHHHHHHc----------------------------
Q 012235 319 RIGLDFGVGTGT----FAARMREQ------NVTIVSTALNLGAPFNEMIALR---------------------------- 360 (467)
Q Consensus 319 r~VLDIGCGtG~----~a~~La~~------g~~V~gvdiDiS~~~l~~a~~r---------------------------- 360 (467)
.+|||+|||+|. ++..|++. +.+|+| +|+|+.|++.|++.
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~a--tDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFA--SDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEE--EESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEE--EECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 379999999997 56666654 357777 77889999988753
Q ss_pred ---------CCccEEEccCCCCccC-CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 361 ---------GLIPLYVTLNQRLPFF-DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 361 ---------g~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
..+.|.++|....|++ .+.||+|+|..++.|+. +...+.++.++.++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 1366778888776664 57899999999996554 44467999999999999999998
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.9e-10 Score=109.61 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=90.9
Q ss_pred hHHH-HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc-------C---CccEEEcc
Q 012235 303 VDFL-ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR-------G---LIPLYVTL 369 (467)
Q Consensus 303 ~d~~-I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r-------g---~i~~~~~d 369 (467)
.|.. +..++...++. +|||+|||+|.++..++++. ..+++ +|+++.+++.++++ + .+.++++|
T Consensus 23 ~D~~lL~~~~~~~~~~--~VLDlG~G~G~~~l~la~~~~~~~v~g--vDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D 98 (260)
T 2ozv_A 23 MDAMLLASLVADDRAC--RIADLGAGAGAAGMAVAARLEKAEVTL--YERSQEMAEFARRSLELPDNAAFSARIEVLEAD 98 (260)
T ss_dssp CHHHHHHHTCCCCSCE--EEEECCSSSSHHHHHHHHHCTTEEEEE--EESSHHHHHHHHHHTTSGGGTTTGGGEEEEECC
T ss_pred cHHHHHHHHhcccCCC--EEEEeCChHhHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHHHHhhhhCCCcceEEEEeCC
Confidence 4443 33444555554 89999999999999999884 56777 77778888887653 1 26788999
Q ss_pred CCCC-------ccCCCccceEEeccccccc---------------cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCH
Q 012235 370 NQRL-------PFFDNTMDLIHTTGFMDGW---------------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDL 427 (467)
Q Consensus 370 ~~~L-------pf~d~sFDlVis~~~L~h~---------------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~ 427 (467)
+..+ ++++++||+|+++..+... .....++.++.++.++|||||.|++.... +..
T Consensus 99 ~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~ 175 (260)
T 2ozv_A 99 VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP---QSV 175 (260)
T ss_dssp TTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG---GGH
T ss_pred HHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH---HHH
Confidence 8877 2567899999998544211 11122568899999999999999986532 234
Q ss_pred HHHHHHHHHcCceee
Q 012235 428 DDYMYMFLQFRYKKH 442 (467)
Q Consensus 428 ~~~~~~i~~~Gf~~l 442 (467)
.++.+.+++. |...
T Consensus 176 ~~~~~~l~~~-~~~~ 189 (260)
T 2ozv_A 176 AEIIAACGSR-FGGL 189 (260)
T ss_dssp HHHHHHHTTT-EEEE
T ss_pred HHHHHHHHhc-CCce
Confidence 4566666653 5433
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.9e-11 Score=113.68 Aligned_cols=97 Identities=19% Similarity=0.293 Sum_probs=74.4
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------C--CccEEEccCCC-Cc--cCCCccce
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------G--LIPLYVTLNQR-LP--FFDNTMDL 382 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g--~i~~~~~d~~~-Lp--f~d~sFDl 382 (467)
+|||||||+|.++..|++. +..++| +|+++.|++.+.++ + .+.++++|+.. ++ +++++||.
T Consensus 49 ~vLDiGcG~G~~~~~la~~~p~~~v~G--iDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 49 EFADIGCGYGGLLVELSPLFPDTLILG--LEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp EEEEETCTTCHHHHHHGGGSTTSEEEE--EESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred eEEEEccCCcHHHHHHHHHCCCCeEEE--EECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 8999999999999999987 567888 78888888776531 2 37889999886 66 77899999
Q ss_pred EEeccccccccchh------hHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDML------LLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~------~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|++.+.- .|.... ....++.++.++|||||.|++.+
T Consensus 127 v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 127 MFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 9987654 332110 01369999999999999999865
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.6e-11 Score=120.34 Aligned_cols=120 Identities=12% Similarity=0.079 Sum_probs=92.9
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|||||||+|.++..++++ +.++++ +|+ +.+++.+.+...+.++.+|+.. +++ .||+|++..+++||.+..
T Consensus 196 ~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~- 268 (358)
T 1zg3_A 196 SLVDVGGGTGGVTKLIHEIFPHLKCTV--FDQ-PQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQ- 268 (358)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTSEEEE--EEC-HHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHH-
T ss_pred EEEEECCCcCHHHHHHHHHCCCCeEEE--ecc-HHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHHH-
Confidence 8999999999999999987 456666 566 5676665543348889999877 664 499999999997776652
Q ss_pred HHHHHHHHHhccCC---CcEEEEEecccCCC--------------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 398 LDFILFDWDRILRP---GGLLWIDRFFCNKK--------------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 398 l~~~L~el~RvLKP---GG~LiI~~~~~~~~--------------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
...+++++.++||| ||++++.++..+.. ..++|.+++++.||+.++...
T Consensus 269 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 45899999999999 99999987654321 234778889999998877544
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-10 Score=104.28 Aligned_cols=138 Identities=17% Similarity=0.124 Sum_probs=87.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-C----------CEEEEEecCCCHHHHHHHHHcCCccEE-EccCCCCc------
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-N----------VTIVSTALNLGAPFNEMIALRGLIPLY-VTLNQRLP------ 374 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g----------~~V~gvdiDiS~~~l~~a~~rg~i~~~-~~d~~~Lp------ 374 (467)
+.++. +|||+|||+|.++..++++ + ..|+++|++.. + ....+.++ .+|....+
T Consensus 20 ~~~~~--~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~--~-----~~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 20 LRPGL--RVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI--F-----PLEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp CCTTC--EEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC--C-----CCTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc--c-----cCCCCeEEEeccCCCHHHHHHHH
Confidence 45555 8999999999999999987 4 67888555432 1 01236677 77766543
Q ss_pred --cCCCccceEEeccccc---cc-cchh----hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 375 --FFDNTMDLIHTTGFMD---GW-LDML----LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 375 --f~d~sFDlVis~~~L~---h~-~~~~----~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
+++++||+|++..+++ |+ .+.. ..+.++.++.++|||||.|++..+.. +....+...+... |..+.+
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~~-f~~v~~ 167 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG--SQSRRLQRRLTEE-FQNVRI 167 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS--GGGHHHHHHHHHH-EEEEEE
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC--ccHHHHHHHHHHH-hcceEE
Confidence 3456899999976542 22 1110 01478999999999999999987643 2334566666665 666665
Q ss_pred EEccC---CCCceEEEEEeec
Q 012235 445 AISPK---SKDEVYLSALLEK 462 (467)
Q Consensus 445 ~~~~k---~~devyl~avlqK 462 (467)
..... ...|.|+.+.--|
T Consensus 168 ~~~~~~~~~~~e~~~v~~g~~ 188 (196)
T 2nyu_A 168 IKPEASRKESSEVYFLATQYH 188 (196)
T ss_dssp ECCC--------EEEEEEEEC
T ss_pred ECCcccCccCceEEEEeeecC
Confidence 43221 3456677665444
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=112.42 Aligned_cols=122 Identities=19% Similarity=0.141 Sum_probs=91.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-----C----CccEEEccCCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-----G----LIPLYVTLNQRLP 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-----g----~i~~~~~d~~~Lp 374 (467)
+...+.+.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.+.++ + .+.++++|+...+
T Consensus 91 i~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 91 IVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVIS--YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHcCCCCCC--EEEEEcccccHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 44555666776 8999999999999999986 578888 77788888777543 3 4788889988888
Q ss_pred cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH-cCceee
Q 012235 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ-FRYKKH 442 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~-~Gf~~l 442 (467)
+++++||+|++... +. ..++.++.++|+|||.+++..+.. +....+.+.+.. .+|...
T Consensus 167 ~~~~~~D~v~~~~~-----~~---~~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~~~~l~~~~~f~~~ 225 (280)
T 1i9g_A 167 LPDGSVDRAVLDML-----AP---WEVLDAVSRLLVAGGVLMVYVATV--TQLSRIVEALRAKQCWTEP 225 (280)
T ss_dssp CCTTCEEEEEEESS-----CG---GGGHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHHSSBCCC
T ss_pred CCCCceeEEEECCc-----CH---HHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHhcCCcCCc
Confidence 87889999998432 22 368999999999999999977543 223345555555 677544
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=120.65 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=81.2
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEeccccccc--
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW-- 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~-- 392 (467)
+|||+|||+|.++..+++++..|++ +|+++.+++.++++ + .+.++++|+...+..+++||+|+++.++++.
T Consensus 236 ~VLDlGcG~G~~~~~la~~g~~V~g--vDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~ 313 (381)
T 3dmg_A 236 QVLDLGAGYGALTLPLARMGAEVVG--VEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGA 313 (381)
T ss_dssp EEEEETCTTSTTHHHHHHTTCEEEE--EESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCS
T ss_pred EEEEEeeeCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhccc
Confidence 8999999999999999999999999 66778888777643 3 2789999999887777899999999988431
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
........++.++.++|||||.++++..
T Consensus 314 ~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 314 VILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp SCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 1223357899999999999999999653
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=105.86 Aligned_cols=101 Identities=12% Similarity=0.019 Sum_probs=75.7
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC----ccCCCccc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL----PFFDNTMD 381 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L----pf~d~sFD 381 (467)
.++. +|||+|||+|.++..+++++ ..|++ +|+++.+++.++++ + .+.++++|+... ++.+++||
T Consensus 43 ~~~~--~vLD~GcG~G~~~~~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD 118 (187)
T 2fhp_A 43 FDGG--MALDLYSGSGGLAIEAVSRGMDKSIC--IEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFD 118 (187)
T ss_dssp CSSC--EEEETTCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred cCCC--CEEEeCCccCHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCC
Confidence 3444 89999999999999888875 58888 66778888777543 3 377888887653 22368999
Q ss_pred eEEeccccccccchhhHHHHHHHH--HhccCCCcEEEEEeccc
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDW--DRILRPGGLLWIDRFFC 422 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el--~RvLKPGG~LiI~~~~~ 422 (467)
+|+++..+ +.... ...+..+ .++|+|||.+++.....
T Consensus 119 ~i~~~~~~-~~~~~---~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 119 LVLLDPPY-AKQEI---VSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EEEECCCG-GGCCH---HHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EEEECCCC-CchhH---HHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 99998875 43333 4566666 89999999999976544
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-10 Score=106.16 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=81.2
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..+++. +..+++ +|+++.+++.+.++ +. +.++.+|+..++ ++++||+|++...-
T Consensus 68 ~vLDiG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~~-- 142 (207)
T 1jsx_A 68 RFIDVGTGPGLPGIPLSIVRPEAHFTL--LDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA-- 142 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS--
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEeccC--
Confidence 8999999999999999976 678888 77778888777643 32 778899988776 46789999986531
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
+ ...++.++.++|+|||.+++..... ..+.+.++++ ||..+.
T Consensus 143 --~---~~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~--g~~~~~ 184 (207)
T 1jsx_A 143 --S---LNDMVSWCHHLPGEQGRFYALKGQM---PEDEIALLPE--EYQVES 184 (207)
T ss_dssp --S---HHHHHHHHTTSEEEEEEEEEEESSC---CHHHHHTSCT--TEEEEE
T ss_pred --C---HHHHHHHHHHhcCCCcEEEEEeCCC---chHHHHHHhc--CCceee
Confidence 1 3589999999999999999965322 2234444433 776554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-10 Score=115.07 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=80.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C-----CccEEEccCCCCc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G-----LIPLYVTLNQRLP 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g-----~i~~~~~d~~~Lp 374 (467)
.+.+.+...++. +|||+|||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|+.. +
T Consensus 213 ~ll~~l~~~~~~--~VLDlGcG~G~~s~~la~~~p~~~V~g--vD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~ 287 (375)
T 4dcm_A 213 FFMQHLPENLEG--EIVDLGCGNGVIGLTLLDKNPQAKVVF--VDESPMAVASSRLNVETNMPEALDRCEFMINNALS-G 287 (375)
T ss_dssp HHHHTCCCSCCS--EEEEETCTTCHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-T
T ss_pred HHHHhCcccCCC--eEEEEeCcchHHHHHHHHHCCCCEEEE--EECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-c
Confidence 344445444444 8999999999999999998 578888 67778888777642 3 25568888776 5
Q ss_pred cCCCccceEEeccccccc--cchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 375 FFDNTMDLIHTTGFMDGW--LDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~--~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++++||+|+++..+++. ........++.++.++|||||.++++.
T Consensus 288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 667899999999988431 222223578999999999999999965
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=117.19 Aligned_cols=103 Identities=13% Similarity=0.137 Sum_probs=78.9
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+...++. +|||||||+|.++..+++.+. .|+++|+ ++ +++.+++ .+ .+.++.+|...++++ ++|
T Consensus 44 ~~l~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~~vD~--s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~ 117 (348)
T 2y1w_A 44 QNHTDFKDK--IVLDVGCGSGILSFFAAQAGARKIYAVEA--ST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQV 117 (348)
T ss_dssp HTGGGTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEEC--ST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCE
T ss_pred hccccCCcC--EEEEcCCCccHHHHHHHhCCCCEEEEECC--HH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-Cce
Confidence 334445555 899999999999999998865 8999555 43 5555543 23 378999999988764 689
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+|++...++|+.... ....+.++.++|||||.+++.
T Consensus 118 D~Ivs~~~~~~~~~~~-~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNER-MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTS-HHHHHHHGGGGEEEEEEEESC
T ss_pred eEEEEeCchhcCChHH-HHHHHHHHHhhcCCCeEEEEe
Confidence 9999998887776543 457788999999999999864
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=110.63 Aligned_cols=108 Identities=11% Similarity=0.174 Sum_probs=82.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhh--CCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c-
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMRE--QNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P- 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~--~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p- 374 (467)
.+..++...++. +|||||||+|..+..+++ .+..|++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 62 ~l~~~~~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 137 (232)
T 3ntv_A 62 LIKQLIRMNNVK--NILEIGTAIGYSSMQFASISDDIHVTT--IERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN 137 (232)
T ss_dssp HHHHHHHHHTCC--EEEEECCSSSHHHHHHHTTCTTCEEEE--EECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH
T ss_pred HHHHHHhhcCCC--EEEEEeCchhHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence 344455554555 899999999999999998 4678888 77778888777643 3 478999998653 4
Q ss_pred cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
..+++||+|++..... . ...++.++.++|||||.+++.+....
T Consensus 138 ~~~~~fD~V~~~~~~~----~--~~~~l~~~~~~LkpgG~lv~d~~~~~ 180 (232)
T 3ntv_A 138 VNDKVYDMIFIDAAKA----Q--SKKFFEIYTPLLKHQGLVITDNVLYH 180 (232)
T ss_dssp HTTSCEEEEEEETTSS----S--HHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred hccCCccEEEEcCcHH----H--HHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence 4478999999775432 1 35789999999999999999776553
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=107.00 Aligned_cols=101 Identities=25% Similarity=0.138 Sum_probs=77.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d 377 (467)
+.+.+.+.++. +|||+|||+|.++..+++.+ ..|++ +|+++.+++.++++ + .+.+..+|.......+
T Consensus 69 ~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 144 (215)
T 2yxe_A 69 MCELLDLKPGM--KVLEIGTGCGYHAAVTAEIVGEDGLVVS--IERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPL 144 (215)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGG
T ss_pred HHHhhCCCCCC--EEEEECCCccHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCC
Confidence 44455566665 89999999999999999874 78888 67778888877653 2 3778888874432236
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
++||+|++..+++|+. .++.++|||||.+++...
T Consensus 145 ~~fD~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 145 APYDRIYTTAAGPKIP---------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CCEEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEES
T ss_pred CCeeEEEECCchHHHH---------HHHHHHcCCCcEEEEEEC
Confidence 7899999999995443 378999999999999764
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=110.19 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=81.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCC-Cc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQR-LP 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~-Lp 374 (467)
.+..++...++. +|||||||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++++|+.. ++
T Consensus 54 ~l~~l~~~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~ 129 (248)
T 3tfw_A 54 FLALLVRLTQAK--RILEIGTLGGYSTIWMARELPADGQLLT--LEADAHHAQVARENLQLAGVDQRVTLREGPALQSLE 129 (248)
T ss_dssp HHHHHHHHHTCS--EEEEECCTTSHHHHHHHTTSCTTCEEEE--EECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHhhcCCC--EEEEecCCchHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 344444454555 8999999999999999987 678888 77778888777653 3 47888998765 34
Q ss_pred cC--CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 FF--DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 f~--d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
.. .++||+|++..... ....++.++.++|||||++++.+....
T Consensus 130 ~~~~~~~fD~V~~d~~~~------~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 130 SLGECPAFDLIFIDADKP------NNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp TCCSCCCCSEEEECSCGG------GHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred hcCCCCCeEEEEECCchH------HHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 33 34899999866431 135789999999999999999876654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=106.37 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=80.5
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||+|||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 55 ~l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 130 (225)
T 3tr6_A 55 LLALLVKLMQAK--KVIDIGTFTGYSAIAMGLALPKDGTLIT--CDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 130 (225)
T ss_dssp HHHHHHHHHTCS--EEEEECCTTSHHHHHHHTTCCTTCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHHhhCCC--EEEEeCCcchHHHHHHHHhCCCCCEEEE--EeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHH
Confidence 344455554555 8999999999999999987 678888 77778888777653 2 377888887443 2
Q ss_pred cCC-----CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 FFD-----NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 f~d-----~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
... ++||+|++.... . ....++.++.++|||||++++.+....
T Consensus 131 ~~~~~~~~~~fD~v~~~~~~----~--~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 131 ELIHAGQAWQYDLIYIDADK----A--NTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp HHHTTTCTTCEEEEEECSCG----G--GHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred HhhhccCCCCccEEEECCCH----H--HHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 212 789999976542 1 246789999999999999999877653
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=113.96 Aligned_cols=124 Identities=15% Similarity=0.043 Sum_probs=89.1
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCcc--CCCccceEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLPF--FDNTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lpf--~d~sFDlVi 384 (467)
.+|||||||+|.++..+++. ...|++ +|+++.+++.++++ ..+.++.+|+..++. .+++||+|+
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVLRHGTVEHCDL--VDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp CEEEEEECTTSHHHHHHHTCTTCCEEEE--EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CeEEEEcCCCCHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 48999999999999999987 457888 66778888777653 237888999877654 478999999
Q ss_pred eccccccccchhhH--HHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceeeEEE
Q 012235 385 TTGFMDGWLDMLLL--DFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 385 s~~~L~h~~~~~~l--~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+.... ++.+...+ ..++.++.|+|||||.+++..... .......+.+.+++.||..+.-.
T Consensus 175 ~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 175 IDTTD-PAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp EECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred ECCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence 98766 33222112 478999999999999999965332 11233477888888999776543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.5e-10 Score=108.77 Aligned_cols=124 Identities=7% Similarity=0.011 Sum_probs=84.4
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCC-CHHHHHHHHHcC----------------CccEEEccCCCC--
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNL-GAPFNEMIALRG----------------LIPLYVTLNQRL-- 373 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDi-S~~~l~~a~~rg----------------~i~~~~~d~~~L-- 373 (467)
.++. +|||+|||+|.++..+++.+. .|++ +|+ ++.+++.++++- .+.+...+....
T Consensus 78 ~~~~--~vLDlG~G~G~~~~~~a~~~~~~v~~--~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (281)
T 3bzb_A 78 IAGK--TVCELGAGAGLVSIVAFLAGADQVVA--TDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPD 153 (281)
T ss_dssp TTTC--EEEETTCTTSHHHHHHHHTTCSEEEE--EECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTH
T ss_pred cCCC--eEEEecccccHHHHHHHHcCCCEEEE--EeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccH
Confidence 3454 899999999999999998876 7888 667 677777665431 244554332221
Q ss_pred cc----CCCccceEEeccccccccchhhHHHHHHHHHhccC---C--CcEEEEEecccC-C--CCHHHHHHHHHHcC-ce
Q 012235 374 PF----FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILR---P--GGLLWIDRFFCN-K--KDLDDYMYMFLQFR-YK 440 (467)
Q Consensus 374 pf----~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLK---P--GG~LiI~~~~~~-~--~~~~~~~~~i~~~G-f~ 440 (467)
.+ .+++||+|++..+++|... ...++..+.++|+ | ||.+++..-... . .....+.+.+++.| |+
T Consensus 154 ~~~~~~~~~~fD~Ii~~dvl~~~~~---~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~ 230 (281)
T 3bzb_A 154 SLQRCTGLQRFQVVLLADLLSFHQA---HDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALI 230 (281)
T ss_dssp HHHHHHSCSSBSEEEEESCCSCGGG---HHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEE
T ss_pred HHHhhccCCCCCEEEEeCcccChHH---HHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEE
Confidence 11 3678999999999865444 3689999999999 9 998776422211 1 12236777888899 86
Q ss_pred eeEE
Q 012235 441 KHKW 444 (467)
Q Consensus 441 ~l~W 444 (467)
....
T Consensus 231 v~~~ 234 (281)
T 3bzb_A 231 AEPW 234 (281)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5433
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=115.85 Aligned_cols=101 Identities=22% Similarity=0.157 Sum_probs=79.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC---EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNV---TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~---~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
.+.+.+.+.++. +|||||||+|.++..+++.+. .|++ +|+++.+++.++++ + .+.+..+|....+..
T Consensus 66 ~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 66 LFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVS--VEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHhcCCCCcC--EEEEecCCchHHHHHHHHhcCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 344556666776 999999999999999998754 4888 77778888877654 3 378889998876556
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++||+|++..+++|+. .++.++|||||.+++..
T Consensus 142 ~~~fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp GCCEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEB
T ss_pred CCCeEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEE
Confidence 78999999999996544 46788999999999964
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.10 E-value=5.4e-10 Score=109.42 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=90.0
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--C-CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ--N-VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPF 375 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g-~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf 375 (467)
..+..++...++. +|||+|||+|..+..+++. + ..|++ +|+++.+++.+.++ + .+.++++|+..++.
T Consensus 73 ~l~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a--vD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~ 148 (274)
T 3ajd_A 73 MIPPIVLNPREDD--FILDMCAAPGGKTTHLAQLMKNKGTIVA--VEISKTRTKALKSNINRMGVLNTIIINADMRKYKD 148 (274)
T ss_dssp GHHHHHHCCCTTC--EEEETTCTTCHHHHHHHHHTTTCSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHH
T ss_pred HHHHHHhCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEE--ECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcch
Confidence 3445667777776 8999999999999999974 4 68888 66778777776543 3 37788888877764
Q ss_pred ----CCCccceEEecccccc---------ccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHHHH
Q 012235 376 ----FDNTMDLIHTTGFMDG---------WLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYMFL 435 (467)
Q Consensus 376 ----~d~sFDlVis~~~L~h---------~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~i~ 435 (467)
.+++||+|++...... |... .....++.++.++|||||.+++++......+ .+.+...++
T Consensus 149 ~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~ 228 (274)
T 3ajd_A 149 YLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQ 228 (274)
T ss_dssp HHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHH
T ss_pred hhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHH
Confidence 2678999998732211 1000 1135789999999999999999887654443 334555554
Q ss_pred H
Q 012235 436 Q 436 (467)
Q Consensus 436 ~ 436 (467)
+
T Consensus 229 ~ 229 (274)
T 3ajd_A 229 K 229 (274)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-10 Score=114.02 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=81.2
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~ 378 (467)
.+.+.+...++. +|||+|||+|.++..+++.+ ..|++ +|+++.+++.++++ +. +.++.+|....+ ++
T Consensus 187 ~ll~~l~~~~~~--~VLDlGcG~G~~~~~la~~~~~~~v~~--vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~ 260 (343)
T 2pjd_A 187 LLLSTLTPHTKG--KVLDVGCGAGVLSVAFARHSPKIRLTL--CDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KG 260 (343)
T ss_dssp HHHHHSCTTCCS--BCCBTTCTTSHHHHHHHHHCTTCBCEE--EESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CS
T ss_pred HHHHhcCcCCCC--eEEEecCccCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cC
Confidence 344444433444 79999999999999999885 47888 77778888777653 32 557777776543 78
Q ss_pred ccceEEeccccccc--cchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 379 TMDLIHTTGFMDGW--LDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 379 sFDlVis~~~L~h~--~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
+||+|+++.++++. ........++.++.|+|||||.+++....
T Consensus 261 ~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 261 RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 99999999988321 12233578999999999999999997643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=108.90 Aligned_cols=96 Identities=8% Similarity=0.041 Sum_probs=75.2
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC-CccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR-LPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~-Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..++.++. .|++ +|+++.+++.++++ + .+.++++|+.. ++..+++||+|+++..+ +
T Consensus 57 ~vLDlgcG~G~~~~~l~~~~~~~V~~--vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~-~ 133 (202)
T 2fpo_A 57 QCLDCFAGSGALGLEALSRYAAGATL--IEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF-R 133 (202)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS-S
T ss_pred eEEEeCCCcCHHHHHHHhcCCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC-C
Confidence 899999999999999887764 7888 78889998887653 3 47888888766 46667899999998775 4
Q ss_pred ccchhhHHHHHHHHHh--ccCCCcEEEEEecc
Q 012235 392 WLDMLLLDFILFDWDR--ILRPGGLLWIDRFF 421 (467)
Q Consensus 392 ~~~~~~l~~~L~el~R--vLKPGG~LiI~~~~ 421 (467)
... ...++.++.+ +|+|||.+++....
T Consensus 134 ~~~---~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 RGL---LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp TTT---HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCc---HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 332 3567777765 69999999987644
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=110.72 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=91.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFF 376 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~ 376 (467)
+...+.+.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.+.++ + .+.++.+|+... ++
T Consensus 104 i~~~~~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 178 (277)
T 1o54_A 104 IAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFA--YEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FD 178 (277)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEE--ECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CS
T ss_pred HHHHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-cc
Confidence 44455666666 8999999999999999987 467887 77888888877654 3 367888887765 56
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
+++||+|+++.. +. ..++.++.++|+|||.+++..... +....+.+.++..||..+.
T Consensus 179 ~~~~D~V~~~~~-----~~---~~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~~~~l~~~gf~~~~ 235 (277)
T 1o54_A 179 EKDVDALFLDVP-----DP---WNYIDKCWEALKGGGRFATVCPTT--NQVQETLKKLQELPFIRIE 235 (277)
T ss_dssp CCSEEEEEECCS-----CG---GGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHSSEEEEE
T ss_pred CCccCEEEECCc-----CH---HHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceeE
Confidence 678999998532 22 368999999999999999977532 2334677778888997553
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.4e-11 Score=112.95 Aligned_cols=122 Identities=15% Similarity=0.063 Sum_probs=84.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC------CCEEEEEecCCCHHHHHHHHHc-CCccEEEccCCCC---cc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ------NVTIVSTALNLGAPFNEMIALR-GLIPLYVTLNQRL---PF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------g~~V~gvdiDiS~~~l~~a~~r-g~i~~~~~d~~~L---pf 375 (467)
.+..++...++. +|||||||+|..+..|++. +.+|++ +|+++.+++.++.. ..+.++++|+..+ +.
T Consensus 72 ~l~~~l~~~~~~--~VLDiG~GtG~~t~~la~~~~~~~~~~~V~g--vD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~ 147 (236)
T 2bm8_A 72 VYHDMLWELRPR--TIVELGVYNGGSLAWFRDLTKIMGIDCQVIG--IDRDLSRCQIPASDMENITLHQGDCSDLTTFEH 147 (236)
T ss_dssp HHHHHHHHHCCS--EEEEECCTTSHHHHHHHHHHHHTTCCCEEEE--EESCCTTCCCCGGGCTTEEEEECCSSCSGGGGG
T ss_pred HHHHHHHhcCCC--EEEEEeCCCCHHHHHHHHhhhhcCCCCEEEE--EeCChHHHHHHhccCCceEEEECcchhHHHHHh
Confidence 344555544444 8999999999999999886 678888 55556665554432 3488999998874 54
Q ss_pred CC-CccceEEeccccccccchhhHHHHHHHHHh-ccCCCcEEEEEecc--cCCCCHHHHHHHHHHc
Q 012235 376 FD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDR-ILRPGGLLWIDRFF--CNKKDLDDYMYMFLQF 437 (467)
Q Consensus 376 ~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~R-vLKPGG~LiI~~~~--~~~~~~~~~~~~i~~~ 437 (467)
.+ .+||+|++... |. ....++.++.| +|||||+|++.++. ........+.++++..
T Consensus 148 ~~~~~fD~I~~d~~--~~----~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~ 207 (236)
T 2bm8_A 148 LREMAHPLIFIDNA--HA----NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAF 207 (236)
T ss_dssp GSSSCSSEEEEESS--CS----SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTT
T ss_pred hccCCCCEEEECCc--hH----hHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhC
Confidence 44 47999998765 32 24679999998 99999999996531 1122233566666665
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=108.74 Aligned_cols=108 Identities=21% Similarity=0.249 Sum_probs=83.0
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-cc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-PF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-pf 375 (467)
.+..++...++. +|||+|||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|+... +.
T Consensus 45 ~l~~~~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 120 (233)
T 2gpy_A 45 SLLHLLKMAAPA--RILEIGTAIGYSAIRMAQALPEATIVS--IERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK 120 (233)
T ss_dssp HHHHHHHHHCCS--EEEEECCTTSHHHHHHHHHCTTCEEEE--ECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH
T ss_pred HHHHHHhccCCC--EEEEecCCCcHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence 444555555555 8999999999999999987 678888 77888888877654 3 377888887664 44
Q ss_pred C--CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 376 F--DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 376 ~--d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
. +++||+|++..... ....++.++.++|||||.+++.+....
T Consensus 121 ~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 121 LELYPLFDVLFIDAAKG------QYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp HTTSCCEEEEEEEGGGS------CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred cccCCCccEEEECCCHH------HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 3 57899999987752 236799999999999999999865443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.09 E-value=9.4e-11 Score=104.33 Aligned_cols=97 Identities=11% Similarity=0.058 Sum_probs=74.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCC-cc-C--CCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRL-PF-F--DNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~L-pf-~--d~sFDlVis~~~L~ 390 (467)
+|||+|||+|.++..+++++..+++ +|+++.+++.++++ + .+.++++|+... +. . +++||+|+++.++
T Consensus 44 ~vLD~GcG~G~~~~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~- 120 (171)
T 1ws6_A 44 RFLDPFAGSGAVGLEAASEGWEAVL--VEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY- 120 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTCEEEE--ECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT-
T ss_pred eEEEeCCCcCHHHHHHHHCCCeEEE--EeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC-
Confidence 8999999999999999999888777 77888888877653 3 477888887663 22 1 3489999999876
Q ss_pred cccchhhHHHHHHHHH--hccCCCcEEEEEecccC
Q 012235 391 GWLDMLLLDFILFDWD--RILRPGGLLWIDRFFCN 423 (467)
Q Consensus 391 h~~~~~~l~~~L~el~--RvLKPGG~LiI~~~~~~ 423 (467)
+ ... +..+..+. ++|||||.+++......
T Consensus 121 ~-~~~---~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 121 A-MDL---AALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp T-SCT---THHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred c-hhH---HHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 3 222 35666666 99999999999776543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.4e-11 Score=115.89 Aligned_cols=100 Identities=12% Similarity=-0.009 Sum_probs=71.1
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------C-CccEE--EccCCCCccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------G-LIPLY--VTLNQRLPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g-~i~~~--~~d~~~Lpf~d~sFDl 382 (467)
+.++. +|||+|||+|.++..++++ ..|+++|++. |...+.++ + .+.++ ++|+..++ +++||+
T Consensus 72 ~~~g~--~VLDlGcGtG~~s~~la~~-~~V~gvD~s~---m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~ 143 (265)
T 2oxt_A 72 VELTG--RVVDLGCGRGGWSYYAASR-PHVMDVRAYT---LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDV 143 (265)
T ss_dssp CCCCE--EEEEESCTTSHHHHHHHTS-TTEEEEEEEC---CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSE
T ss_pred CCCCC--EEEEeCcCCCHHHHHHHHc-CcEEEEECch---hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcE
Confidence 45555 8999999999999999988 7899966653 32111111 1 36677 78888876 789999
Q ss_pred EEeccccccccc----hhhHHHHHHHHHhccCCCc--EEEEEecc
Q 012235 383 IHTTGFMDGWLD----MLLLDFILFDWDRILRPGG--LLWIDRFF 421 (467)
Q Consensus 383 Vis~~~L~h~~~----~~~l~~~L~el~RvLKPGG--~LiI~~~~ 421 (467)
|+|..+ .+... ......++.++.++||||| .|++..+.
T Consensus 144 V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 144 IMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 999876 22211 1101137899999999999 99997765
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-10 Score=104.15 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=79.9
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||||||+|..+..+++. +.++++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 49 ~l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 124 (223)
T 3duw_A 49 FLQLLVQIQGAR--NILEIGTLGGYSTIWLARGLSSGGRVVT--LEASEKHADIARSNIERANLNDRVEVRTGLALDSLQ 124 (223)
T ss_dssp HHHHHHHHHTCS--EEEEECCTTSHHHHHHHTTCCSSCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHHhhCCC--EEEEecCCccHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 344444555555 8999999999999999988 678888 66778887777543 3 378888887543 2
Q ss_pred -cC---CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 -FF---DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 -f~---d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+. .++||+|++..... ....++.++.++|||||.+++.+....
T Consensus 125 ~~~~~~~~~fD~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 125 QIENEKYEPFDFIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp HHHHTTCCCCSEEEECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred HHHhcCCCCcCEEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 11 26799999876542 135789999999999999999876654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.3e-10 Score=106.63 Aligned_cols=99 Identities=10% Similarity=-0.043 Sum_probs=74.4
Q ss_pred ceEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHc---C----C-------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALR---G----L------------------------- 362 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~r---g----~------------------------- 362 (467)
.+|||+|||+|.++..+++. +..|++ +|+++.+++.++++ . .
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~~~~~v~g--vDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIA--SDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGGEEEEEE--EESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHhccCCCeEEE--EECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 48999999999999999876 456777 77788888777632 1 1
Q ss_pred ---cc-------------EEEccCCCCcc-----CCCccceEEeccccccccc------hhhHHHHHHHHHhccCCCcEE
Q 012235 363 ---IP-------------LYVTLNQRLPF-----FDNTMDLIHTTGFMDGWLD------MLLLDFILFDWDRILRPGGLL 415 (467)
Q Consensus 363 ---i~-------------~~~~d~~~Lpf-----~d~sFDlVis~~~L~h~~~------~~~l~~~L~el~RvLKPGG~L 415 (467)
+. +.++|+..... ..++||+|+++..+.+... ......++.++.++|||||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 45 88888776431 3458999999876643332 234568999999999999999
Q ss_pred EEEe
Q 012235 416 WIDR 419 (467)
Q Consensus 416 iI~~ 419 (467)
++..
T Consensus 211 ~~~~ 214 (250)
T 1o9g_A 211 AVTD 214 (250)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9843
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.8e-10 Score=105.20 Aligned_cols=120 Identities=11% Similarity=0.074 Sum_probs=86.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~s 379 (467)
+...+.+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.++++ + .+.+..+|.......+++
T Consensus 83 ~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 83 IALKLNLNKEK--RVLEFGTGSGALLAVLSEVAGEVWT--FEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--ECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHhcCCCCCC--EEEEeCCCccHHHHHHHHhCCEEEE--EecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 44445566666 8999999999999999988888888 77788888877653 2 367888887775435678
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
||+|+++.. +. ..++.++.++|||||.+++..+.. +....+.+.++.. |..
T Consensus 159 ~D~v~~~~~-----~~---~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~-f~~ 209 (248)
T 2yvl_A 159 FHAAFVDVR-----EP---WHYLEKVHKSLMEGAPVGFLLPTA--NQVIKLLESIENY-FGN 209 (248)
T ss_dssp BSEEEECSS-----CG---GGGHHHHHHHBCTTCEEEEEESSH--HHHHHHHHHSTTT-EEE
T ss_pred ccEEEECCc-----CH---HHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHhh-CCc
Confidence 999998432 22 368999999999999999977533 2223444444444 543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=115.18 Aligned_cols=100 Identities=9% Similarity=-0.005 Sum_probs=71.2
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--------CccEE--EccCCCCccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--------LIPLY--VTLNQRLPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--------~i~~~--~~d~~~Lpf~d~sFDl 382 (467)
+.++. +|||+|||+|.++..++++ ..|+|+|++. |...+.++. .+.++ ++|+..+| +++||+
T Consensus 80 ~~~g~--~VLDlGcGtG~~s~~la~~-~~V~gVD~s~---m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~ 151 (276)
T 2wa2_A 80 VELKG--TVVDLGCGRGSWSYYAASQ-PNVREVKAYT---LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADT 151 (276)
T ss_dssp CCCCE--EEEEESCTTCHHHHHHHTS-TTEEEEEEEC---CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSE
T ss_pred CCCCC--EEEEeccCCCHHHHHHHHc-CCEEEEECch---hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCE
Confidence 44555 8999999999999999998 6899966653 322221111 36678 78888776 789999
Q ss_pred EEeccccccc----cchhhHHHHHHHHHhccCCCc--EEEEEecc
Q 012235 383 IHTTGFMDGW----LDMLLLDFILFDWDRILRPGG--LLWIDRFF 421 (467)
Q Consensus 383 Vis~~~L~h~----~~~~~l~~~L~el~RvLKPGG--~LiI~~~~ 421 (467)
|+|..+ .+. .+......++.++.|+||||| .|++..+.
T Consensus 152 Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 152 VLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 999876 222 111111137899999999999 99997765
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-10 Score=107.42 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=75.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCCCccCCC
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~Lpf~d~ 378 (467)
+.++. +|||+|||+|.++..+++. + ..|++ +|+++.+++.++++ ..+.++++|....+..++
T Consensus 75 ~~~~~--~vLDiG~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 150 (226)
T 1i1n_A 75 LHEGA--KALDVGSGSGILTACFARMVGCTGKVIG--IDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEA 150 (226)
T ss_dssp SCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGC
T ss_pred CCCCC--EEEEEcCCcCHHHHHHHHHhCCCcEEEE--EeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCC
Confidence 45555 8999999999999999986 4 57888 67778887777532 247788888876666678
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
+||+|++..++.+ ++.++.++|||||.+++....
T Consensus 151 ~fD~i~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 151 PYDAIHVGAAAPV---------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CEEEEEECSBBSS---------CCHHHHHTEEEEEEEEEEESC
T ss_pred CcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEec
Confidence 8999999988743 346789999999999997643
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-09 Score=108.87 Aligned_cols=131 Identities=18% Similarity=0.079 Sum_probs=93.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d 377 (467)
+..+....++. .|||+|||+|.++..++..+ ..++| +|+++.+++.++++ + .+.+.++|+..++.+.
T Consensus 195 l~~~~~~~~~~--~vLD~gcGsG~~~ie~a~~~~~~~~v~g--~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 195 LLRLADARPGM--RVLDPFTGSGTIALEAASTLGPTSPVYA--GDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHTTCCTTC--CEEESSCTTSHHHHHHHHHHCTTSCEEE--EESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHhCCCCCC--EEEeCCCCcCHHHHHHHHhhCCCceEEE--EECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 34445555555 89999999999999999864 78888 66778888777643 4 4789999999998878
Q ss_pred CccceEEeccccccccc-----hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc
Q 012235 378 NTMDLIHTTGFMDGWLD-----MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~-----~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
+.||+|+++........ ......++.++.++|||||.+++.+.. .+.+.+..+ .|++..+-...
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~-----~~~~~~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR-----PALLKRALP-PGFALRHARVV 339 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC-----HHHHHHHCC-TTEEEEEEEEC
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC-----HHHHHHHhh-cCcEEEEEEEE
Confidence 88999999866521111 111357899999999999999997642 223334444 77766654433
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=108.82 Aligned_cols=136 Identities=14% Similarity=0.204 Sum_probs=87.8
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CCc-cEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GLI-PLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~i-~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..++.. +.++++ +|+++.|++.++++ |.- .+...|.... .++++||+|++..++++.
T Consensus 52 ~VLDlGCG~GplAl~l~~~~p~a~~~A--~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LHlL 128 (200)
T 3fzg_A 52 SILDFGCGFNPLALYQWNENEKIIYHA--YDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLPVL 128 (200)
T ss_dssp EEEEETCTTHHHHHHHHCSSCCCEEEE--ECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHHHH
T ss_pred eEEEecCCCCHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHHhh
Confidence 8999999999999999877 567777 78889998888653 332 4555555433 467899999999999555
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEec---ccCCCCHH-HHHHHHHHcCceeeEEEEccC--CCCceEEEEEeec
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRF---FCNKKDLD-DYMYMFLQFRYKKHKWAISPK--SKDEVYLSALLEK 462 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~---~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k--~~devyl~avlqK 462 (467)
++ .+..+.++.+.|||||.|+-... ......++ .|...+++. ...-.|.+... +++-+|+...+||
T Consensus 129 -~~--~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~-~~~~~~~~~~~~~~nEl~y~~~~~~~ 200 (200)
T 3fzg_A 129 -KQ--QDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESF-TKGWIKILDSKVIGNELVYITSGFQK 200 (200)
T ss_dssp -HH--TTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHH-TTTTSCEEEEEEETTEEEEEECCC--
T ss_pred -hh--hHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHh-ccCcceeeeeeeeCceEEEEEecccC
Confidence 44 25778899999999998776441 11111222 444444443 12223444333 3444576655554
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=110.75 Aligned_cols=120 Identities=14% Similarity=0.015 Sum_probs=87.0
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCCccC----CCccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRLPFF----DNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~Lpf~----d~sFDlVis~~ 387 (467)
+|||+|||+|.++..+++.|..|++ +|+++.+++.++++ + .+.++++|+..+... +++||+|+++.
T Consensus 156 ~VLDlgcGtG~~sl~la~~ga~V~~--VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 156 KVLNLFGYTGVASLVAAAAGAEVTH--VDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp EEEEETCTTCHHHHHHHHTTCEEEE--ECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred cEEEcccccCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 8999999999999999999888888 78888888877653 3 267888887665321 57899999964
Q ss_pred cccc-------ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH----HcCcee
Q 012235 388 FMDG-------WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL----QFRYKK 441 (467)
Q Consensus 388 ~L~h-------~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~----~~Gf~~ 441 (467)
.... +.....+..++.++.++|+|||.|++..........+.+.++++ +.|++.
T Consensus 234 P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 234 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 4211 11122356889999999999999887665555445555666665 556644
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.4e-10 Score=105.40 Aligned_cols=105 Identities=15% Similarity=0.058 Sum_probs=77.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-cc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-PF 375 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-pf 375 (467)
+..++...++. +|||+|||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++++|+... +.
T Consensus 48 l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 123 (210)
T 3c3p_A 48 LYLLARIKQPQ--LVVVPGDGLGCASWWFARAISISSRVVM--IDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG 123 (210)
T ss_dssp HHHHHHHHCCS--EEEEESCGGGHHHHHHHTTSCTTCEEEE--EESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT
T ss_pred HHHHHHhhCCC--EEEEEcCCccHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc
Confidence 33333333444 8999999999999999987 568888 67778888777643 2 377888887653 54
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.++ ||+|++.... . ....++.++.++|||||.+++.+...
T Consensus 124 ~~~-fD~v~~~~~~---~---~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 124 QRD-IDILFMDCDV---F---NGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp CCS-EEEEEEETTT---S---CHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred CCC-CCEEEEcCCh---h---hhHHHHHHHHHhcCCCeEEEEECccc
Confidence 456 9999987432 1 23679999999999999999976554
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-09 Score=111.44 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=104.6
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--C-CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc-
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ--N-VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP- 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g-~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp- 374 (467)
..+..++...++. +|||+|||+|..+..+++. + ..|++ +|+++.+++.+.++ + .+.++++|+..++
T Consensus 249 ~l~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a--~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~ 324 (450)
T 2yxl_A 249 AVASIVLDPKPGE--TVVDLAAAPGGKTTHLAELMKNKGKIYA--FDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPE 324 (450)
T ss_dssp HHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEE--ECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSS
T ss_pred HHHHHhcCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEE--EcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcch
Confidence 3455667777777 8999999999999999985 3 67888 77888887776543 4 3778888888776
Q ss_pred -cCCCccceEEec------cccccccch------hh-------HHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHH
Q 012235 375 -FFDNTMDLIHTT------GFMDGWLDM------LL-------LDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYM 433 (467)
Q Consensus 375 -f~d~sFDlVis~------~~L~h~~~~------~~-------l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~ 433 (467)
+++++||+|++. .++.+.++. .. ...++.++.++|||||.+++++......+ .+.+...
T Consensus 325 ~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~ 404 (450)
T 2yxl_A 325 IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWF 404 (450)
T ss_dssp SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHH
Confidence 555889999963 222111110 00 14689999999999999999887665443 3355666
Q ss_pred HHHc-CceeeEE-------------EEccC-CCCceEEEEEeecC
Q 012235 434 FLQF-RYKKHKW-------------AISPK-SKDEVYLSALLEKP 463 (467)
Q Consensus 434 i~~~-Gf~~l~W-------------~~~~k-~~devyl~avlqKP 463 (467)
+++. +|....- ...+. ...+.|+.++++|.
T Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 449 (450)
T 2yxl_A 405 LNVHPEFKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALLEKS 449 (450)
T ss_dssp HHHCSSCEECCCCSSSEECSSTTCEEECHHHHSSCCEEEEEEECC
T ss_pred HHhCCCCEEeecccccccccCCCeEEECCCCCCCCceEEEEEEEC
Confidence 6665 5654321 11111 23356778888873
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.5e-10 Score=105.69 Aligned_cols=129 Identities=12% Similarity=0.022 Sum_probs=80.4
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC---ccC---CCccceE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL---PFF---DNTMDLI 383 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L---pf~---d~sFDlV 383 (467)
.+|||+|||+|.++..++++ +..|++ +|+++.|++.++++ + .+.++++|+... +++ +++||+|
T Consensus 67 ~~vLDlG~G~G~~~~~la~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 67 RRGIDIGTGASCIYPLLGATLNGWYFLA--TEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CEEEEeCCChhHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 38999999999999988876 678888 77788888877643 2 278889887652 344 2689999
Q ss_pred Eeccccccccch------------hhHHHHHHHHHhccCCCcEEEEEe------------------cccCCCCHHHHHHH
Q 012235 384 HTTGFMDGWLDM------------LLLDFILFDWDRILRPGGLLWIDR------------------FFCNKKDLDDYMYM 433 (467)
Q Consensus 384 is~~~L~h~~~~------------~~l~~~L~el~RvLKPGG~LiI~~------------------~~~~~~~~~~~~~~ 433 (467)
+++..+.+.... .....++.++.|+|||||.+.+.. ........+.+.++
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 224 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEE 224 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHH
Confidence 998665322200 001134455666666665443321 01112233578889
Q ss_pred HHHcCceeeEEEEccC
Q 012235 434 FLQFRYKKHKWAISPK 449 (467)
Q Consensus 434 i~~~Gf~~l~W~~~~k 449 (467)
+++.||..+.......
T Consensus 225 l~~~Gf~~v~~~~~~~ 240 (254)
T 2h00_A 225 LRIQGVPKVTYTEFCQ 240 (254)
T ss_dssp HHHTTCSEEEEEEEEE
T ss_pred HHHcCCCceEEEEEec
Confidence 9999998887654443
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.5e-10 Score=106.28 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=75.7
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCC-------EEEEEecCCCHHHHHHHHHc----C-------CccEEEccCCCC
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNV-------TIVSTALNLGAPFNEMIALR----G-------LIPLYVTLNQRL 373 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~-------~V~gvdiDiS~~~l~~a~~r----g-------~i~~~~~d~~~L 373 (467)
.+.++. +|||||||+|.++..+++... .|++ +|+++.+++.+.++ + .+.++.+|....
T Consensus 77 ~~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 152 (227)
T 2pbf_A 77 VLKPGS--RAIDVGSGSGYLTVCMAIKMNVLENKNSYVIG--LERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQV 152 (227)
T ss_dssp TSCTTC--EEEEESCTTSHHHHHHHHHTTTTTCTTCEEEE--EESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGC
T ss_pred hCCCCC--EEEEECCCCCHHHHHHHHHhcccCCCCCEEEE--EeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhc
Confidence 355665 899999999999999998743 8888 67778887777543 2 478888988776
Q ss_pred c----cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 374 P----FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 374 p----f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
. ..+++||+|++..++.+ ++.++.++|||||.+++...
T Consensus 153 ~~~~~~~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 153 NEEEKKELGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp CHHHHHHHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEEE
T ss_pred ccccCccCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEc
Confidence 5 55688999999988843 34678999999999999654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-09 Score=110.72 Aligned_cols=154 Identities=15% Similarity=0.035 Sum_probs=101.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCc--cC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLP--FF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lp--f~ 376 (467)
.+..++...++. +|||+|||+|..+..+++.+ ..|++ +|+++.+++.+.++ +. +.++++|+..++ ++
T Consensus 237 ~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a--~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~ 312 (429)
T 1sqg_A 237 GCMTWLAPQNGE--HILDLCAAPGGKTTHILEVAPEAQVVA--VDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCG 312 (429)
T ss_dssp THHHHHCCCTTC--EEEEESCTTCHHHHHHHHHCTTCEEEE--EESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHT
T ss_pred HHHHHcCCCCcC--eEEEECCCchHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcc
Confidence 455667777776 89999999999999999874 57888 55555555555432 43 678888988876 55
Q ss_pred CCccceEEecc------ccccccc------hhh-------HHHHHHHHHhccCCCcEEEEEecccCCC-CHHHHHHHHHH
Q 012235 377 DNTMDLIHTTG------FMDGWLD------MLL-------LDFILFDWDRILRPGGLLWIDRFFCNKK-DLDDYMYMFLQ 436 (467)
Q Consensus 377 d~sFDlVis~~------~L~h~~~------~~~-------l~~~L~el~RvLKPGG~LiI~~~~~~~~-~~~~~~~~i~~ 436 (467)
+++||+|++.. ++.+.++ ... ...++.++.++|||||.+++++.....+ +.+.+...+++
T Consensus 313 ~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~ 392 (429)
T 1sqg_A 313 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 392 (429)
T ss_dssp TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHh
Confidence 68999999732 2211111 000 1478999999999999999988766443 33355566665
Q ss_pred c-CceeeE--------EEEccC-CCCceEEEEEeecC
Q 012235 437 F-RYKKHK--------WAISPK-SKDEVYLSALLEKP 463 (467)
Q Consensus 437 ~-Gf~~l~--------W~~~~k-~~devyl~avlqKP 463 (467)
. +|..+. +..-+. ...+.|+.|+++|.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 429 (429)
T 1sqg_A 393 TADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK 429 (429)
T ss_dssp CTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC-
T ss_pred CCCCEEeCCCCCCCCeEEECCCCCCCCceEEEEEEEC
Confidence 4 454432 222232 23356888889884
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.1e-10 Score=105.79 Aligned_cols=101 Identities=22% Similarity=0.158 Sum_probs=76.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCC-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDN- 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~- 378 (467)
+.+.+.+.++. +|||+|||+|.++..+++.+ ..|++ +|+++.+++.++++ + .+.+..+|. ..+++++
T Consensus 83 ~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~ 157 (235)
T 1jg1_A 83 MLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYT--IERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKA 157 (235)
T ss_dssp HHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEE--EESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGC
T ss_pred HHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHhCCEEEE--EeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCC
Confidence 44555666666 89999999999999999885 78888 67778888777653 2 367888886 4455444
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
.||+|++..++.++. .++.++|||||.+++....
T Consensus 158 ~fD~Ii~~~~~~~~~---------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIP---------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CEEEEEECSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred CccEEEECCcHHHHH---------HHHHHhcCCCcEEEEEEec
Confidence 499999999885433 3678999999999996643
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=108.61 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=75.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc-----------------CCccEE
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR-----------------GLIPLY 366 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r-----------------g~i~~~ 366 (467)
+...+.+.++. +|||+|||+|.++..+++. | ..|++ +|+++.+++.+.++ ..+.++
T Consensus 97 ~l~~l~~~~g~--~VLDiG~G~G~~~~~la~~~g~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 97 ILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVIS--FEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEE--EESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCceEEE--EeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 44556677776 8999999999999999987 5 67888 67778887777542 247888
Q ss_pred EccCCCC--ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 367 VTLNQRL--PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 367 ~~d~~~L--pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
++|+..+ ++++++||+|+++..- + ..++.++.++|||||.+++...
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~~-----~---~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDMLN-----P---HVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ESCTTCCC-------EEEEEECSSS-----T---TTTHHHHGGGEEEEEEEEEEES
T ss_pred ECChHHcccccCCCCeeEEEECCCC-----H---HHHHHHHHHhcCCCcEEEEEeC
Confidence 9998876 4667789999986532 2 2478999999999999998654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-10 Score=118.99 Aligned_cols=94 Identities=19% Similarity=0.146 Sum_probs=72.7
Q ss_pred ceEEEECCC------ccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC------CCccceE
Q 012235 319 RIGLDFGVG------TGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF------DNTMDLI 383 (467)
Q Consensus 319 r~VLDIGCG------tG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~------d~sFDlV 383 (467)
.+||||||| +|..+..++++ +..|+++| +++.|. .....+.++++|+.++|+. +++||+|
T Consensus 218 ~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVD--iSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 218 VRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLD--IMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp CEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEE--SSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEE--CCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 489999999 77777777654 67899955 455552 2334589999999999887 7899999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
++..+. ++.+ ...+|.++.|+|||||+|++.++.
T Consensus 293 isdgsH-~~~d---~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 293 IDDGSH-INAH---VRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EECSCC-CHHH---HHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EECCcc-cchh---HHHHHHHHHHhcCCCeEEEEEecc
Confidence 997542 4432 468999999999999999998765
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.1e-09 Score=99.04 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHH----cCCccEEEccCCCCc---cCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIAL----RGLIPLYVTLNQRLP---FFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~----rg~i~~~~~d~~~Lp---f~d~sFDl 382 (467)
+.++. +|||+|||+|.++..+++. + ..|++ +|+++.+++.+.+ ...+.++++|+.... ..+++||+
T Consensus 71 ~~~~~--~vLDlG~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~ 146 (227)
T 1g8a_A 71 IKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFG--IEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCC--EEEEEeccCCHHHHHHHHHhCCCeEEEE--EECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceE
Confidence 44455 8999999999999999976 3 67888 6778877766543 234788899887632 22468999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|++.... ......++.++.++|||||.+++.
T Consensus 147 v~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 147 IFEDVAQ-----PTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEECCCS-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCC-----HhHHHHHHHHHHHhcCCCCEEEEE
Confidence 9987652 111235599999999999999997
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.01 E-value=9.7e-10 Score=115.24 Aligned_cols=109 Identities=11% Similarity=0.044 Sum_probs=77.5
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHH-------HH----cC----CccEEEccC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMI-------AL----RG----LIPLYVTLN 370 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a-------~~----rg----~i~~~~~d~ 370 (467)
.+.+.+.++. +|||+|||+|.++..+++. + ..|+| +|+++.+++.| ++ .+ .+.+++++.
T Consensus 235 l~~l~l~~g~--~VLDLGCGsG~la~~LA~~~g~~~V~G--VDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 235 YQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFG--CEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEE--EECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHhcCCCCCC--EEEEeCCCcCHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 3445566666 8999999999999999986 4 46888 66667665555 33 23 366777654
Q ss_pred CCC--cc--CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 371 QRL--PF--FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 371 ~~L--pf--~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
... ++ ..++||+|+++.++ +.. . +...+.++.++|||||.+++.+.+.+.
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l-~~~-d--~~~~L~el~r~LKpGG~lVi~d~f~p~ 364 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFL-FDE-D--LNKKVEKILQTAKVGCKIISLKSLRSL 364 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTT-CCH-H--HHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred cccccccccccCCCCEEEEeCcc-ccc-c--HHHHHHHHHHhCCCCeEEEEeeccCCc
Confidence 322 22 35789999998666 322 2 467899999999999999997655543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-10 Score=113.74 Aligned_cols=125 Identities=12% Similarity=-0.016 Sum_probs=79.4
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecC-C-CHHHHHHHH--Hc--CCccEEEc-cCCCCccCCCccceEEe
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALN-L-GAPFNEMIA--LR--GLIPLYVT-LNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiD-i-S~~~l~~a~--~r--g~i~~~~~-d~~~Lpf~d~sFDlVis 385 (467)
+.++. +|||+|||+|.++..++++ ..|+++|+. + +..+++.+. .. ..+.++++ |+..++ +++||+|+|
T Consensus 80 ~~~g~--~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~s 154 (305)
T 2p41_A 80 VTPEG--KVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLC 154 (305)
T ss_dssp SCCCE--EEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCCC--EEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEE
Confidence 34555 8999999999999999998 578897661 0 121111111 11 23677788 777665 578999999
Q ss_pred ccccc--cc-cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 386 TGFMD--GW-LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 386 ~~~L~--h~-~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
..++. ++ .+......++.++.++|||||.|++..+.........+...+... |..+.
T Consensus 155 d~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~-f~~v~ 214 (305)
T 2p41_A 155 DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRK-HGGAL 214 (305)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHH-HCCEE
T ss_pred CCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHH-cCCEE
Confidence 87652 22 222111257899999999999999866544333333555555544 44443
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-09 Score=109.02 Aligned_cols=143 Identities=10% Similarity=-0.001 Sum_probs=98.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d 377 (467)
+..+. ..++. +|||+|||+|.++..++..+. .++| +|+++.+++.++++ + .+.+.++|+..+++++
T Consensus 210 l~~~~-~~~~~--~vLD~gCGsG~~~i~~a~~~~~~~v~g--~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~ 284 (373)
T 3tm4_A 210 MIELA-ELDGG--SVLDPMCGSGTILIELALRRYSGEIIG--IEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV 284 (373)
T ss_dssp HHHHH-TCCSC--CEEETTCTTCHHHHHHHHTTCCSCEEE--EESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC
T ss_pred HHHhh-cCCCC--EEEEccCcCcHHHHHHHHhCCCCeEEE--EeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc
Confidence 33444 55555 899999999999999999876 7888 77778888877653 3 3789999999999888
Q ss_pred CccceEEeccccccccc-----hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCC
Q 012235 378 NTMDLIHTTGFMDGWLD-----MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKD 452 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~-----~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~d 452 (467)
++||+|+++..+..... ......++.++.|+| ||.+++... +.+.+.+.+.+.||+..+-.....+.
T Consensus 285 ~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-----~~~~~~~~~~~~G~~~~~~~~~~nG~- 356 (373)
T 3tm4_A 285 DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-----EKKAIEEAIAENGFEIIHHRVIGHGG- 356 (373)
T ss_dssp SCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-----CHHHHHHHHHHTTEEEEEEEEEEETT-
T ss_pred CCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-----CHHHHHHHHHHcCCEEEEEEEEEcCC-
Confidence 99999999876522110 111357889999999 444444332 34467778889998876544333221
Q ss_pred ceEEEEEeecCC
Q 012235 453 EVYLSALLEKPP 464 (467)
Q Consensus 453 evyl~avlqKP~ 464 (467)
.-..++|+|.
T Consensus 357 --l~~~~~~~~~ 366 (373)
T 3tm4_A 357 --LMVHLYVVKL 366 (373)
T ss_dssp --EEEEEEEEEE
T ss_pred --EEEEEEeccC
Confidence 2244566653
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.1e-09 Score=105.91 Aligned_cols=131 Identities=17% Similarity=0.083 Sum_probs=89.6
Q ss_pred cCCCCCCceEEEECC------CccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccE-EEccCCCCccCCCccc
Q 012235 312 AIKPGETRIGLDFGV------GTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPL-YVTLNQRLPFFDNTMD 381 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC------GtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~-~~~d~~~Lpf~d~sFD 381 (467)
.+.++. +|||+|| |+|. ..+++. +..|+++|++. . + ..+.+ +++|+..+++. ++||
T Consensus 60 ~l~~g~--~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~--~-v------~~v~~~i~gD~~~~~~~-~~fD 125 (290)
T 2xyq_A 60 AVPYNM--RVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLND--F-V------SDADSTLIGDCATVHTA-NKWD 125 (290)
T ss_dssp CCCTTC--EEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSC--C-B------CSSSEEEESCGGGCCCS-SCEE
T ss_pred CCCCCC--EEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCC--C-C------CCCEEEEECccccCCcc-Cccc
Confidence 455665 8999999 4476 333332 46899966554 3 1 24789 99999888764 7899
Q ss_pred eEEecccccccc---------chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCC
Q 012235 382 LIHTTGFMDGWL---------DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKD 452 (467)
Q Consensus 382 lVis~~~L~h~~---------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~d 452 (467)
+|+++... ++. .....+.++.++.|+|||||.|++..+.... .+.+.+.+++.||..+..........
T Consensus 126 ~Vvsn~~~-~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~--~~~l~~~l~~~GF~~v~~~asr~~s~ 202 (290)
T 2xyq_A 126 LIISDMYD-PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW--NADLYKLMGHFSWWTAFVTNVNASSS 202 (290)
T ss_dssp EEEECCCC-CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC--CHHHHHHHTTEEEEEEEEEGGGTTSS
T ss_pred EEEEcCCc-cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC--HHHHHHHHHHcCCcEEEEEEcCCCch
Confidence 99997543 211 1122457899999999999999997765432 34778888888998877663444445
Q ss_pred ceEEEEE
Q 012235 453 EVYLSAL 459 (467)
Q Consensus 453 evyl~av 459 (467)
+.|+.+.
T Consensus 203 e~~lv~~ 209 (290)
T 2xyq_A 203 EAFLIGA 209 (290)
T ss_dssp CEEEEEE
T ss_pred heEEecC
Confidence 6666543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-08 Score=97.58 Aligned_cols=140 Identities=14% Similarity=0.020 Sum_probs=97.8
Q ss_pred HHHHHhcC-CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCC
Q 012235 306 LISDILAI-KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d 377 (467)
.+..+... .++. +|||||||+|.++..+++.+.....+++|+++.+++.|+++ + .+.+..+|......++
T Consensus 11 RL~~i~~~v~~g~--~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~ 88 (230)
T 3lec_A 11 RLQKVANYVPKGA--RLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA 88 (230)
T ss_dssp HHHHHHTTSCTTE--EEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG
T ss_pred HHHHHHHhCCCCC--EEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccc
Confidence 34444443 3454 89999999999999999987543333477778888777643 3 3788999977765544
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLS 457 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~ 457 (467)
+.||+|+.....- ..+..++.+..+.|+++|+|++... ...+.+.+.+...||....=..... ++.+|-.
T Consensus 89 ~~~D~IviaGmGg-----~lI~~IL~~~~~~l~~~~~lIlqp~----~~~~~lr~~L~~~Gf~i~~E~lv~e-~~~~Yei 158 (230)
T 3lec_A 89 DNIDTITICGMGG-----RLIADILNNDIDKLQHVKTLVLQPN----NREDDLRKWLAANDFEIVAEDILTE-NDKRYEI 158 (230)
T ss_dssp GCCCEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEES----SCHHHHHHHHHHTTEEEEEEEEEEC---CEEEE
T ss_pred cccCEEEEeCCch-----HHHHHHHHHHHHHhCcCCEEEEECC----CChHHHHHHHHHCCCEEEEEEEEEE-CCEEEEE
Confidence 5799988655431 1245788999999999999998663 3456889999999998876554433 2344443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.98 E-value=9.4e-10 Score=105.44 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=72.8
Q ss_pred eEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc------------C--CccEEEccCCC-Cc--cCCCcc
Q 012235 320 IGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR------------G--LIPLYVTLNQR-LP--FFDNTM 380 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r------------g--~i~~~~~d~~~-Lp--f~d~sF 380 (467)
+|||||||+|.++..+++.+ ..++| +|+++.+++.+.++ + .+.++.+|+.. ++ +.++++
T Consensus 52 ~vLDiGcG~G~~~~~la~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 52 TIADIGCGFGGLMIDLSPAFPEDLILG--MEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp EEEEETCTTSHHHHHHHHHSTTSEEEE--EESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred EEEEEcCCCCHHHHHHHHhCCCCCEEE--EEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 89999999999999999875 46888 77888888766432 3 37788999876 66 678899
Q ss_pred ceEEeccccccccchh------hHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDML------LLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~------~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|.|+..+.- .|.... ....++.++.++|+|||.|++.+
T Consensus 130 d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 130 SKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 999865433 221100 01379999999999999999954
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.7e-10 Score=121.94 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=81.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cCC--ccEEEccCCCC--ccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RGL--IPLYVTLNQRL--PFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg~--i~~~~~d~~~L--pf~d~sFDlVis~~~L~h 391 (467)
+|||||||.|.++..|+++|.+|+| +|.++.+++.|+. .+. +.+.+++++++ ++.+++||+|+|..+++|
T Consensus 69 ~vLDvGCG~G~~~~~la~~ga~V~g--iD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~eh 146 (569)
T 4azs_A 69 NVLDLGCAQGFFSLSLASKGATIVG--IDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHH 146 (569)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHH
T ss_pred eEEEECCCCcHHHHHHHhCCCEEEE--ECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhc
Confidence 7999999999999999999999999 7888988887753 342 78999999887 466889999999999999
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..++... ..+..+.+.|+++|..++..+..
T Consensus 147 v~~~~~~-~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 147 IVHLHGI-DEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHCH-HHHHHHHHHHHHHSSEEEEECCC
T ss_pred CCCHHHH-HHHHHHHHHhccccceeeEEecc
Confidence 8876433 33456778888888877766544
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=108.25 Aligned_cols=104 Identities=13% Similarity=-0.003 Sum_probs=76.8
Q ss_pred CCceEEEECCCc--cHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCCc------cCCCc
Q 012235 317 ETRIGLDFGVGT--GTFAARMREQ---NVTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 317 ~~r~VLDIGCGt--G~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~Lp------f~d~s 379 (467)
.++.+||||||+ +.....++++ +..|++ +|.|+.|++.++.+ +.+.++++|+.+++ ...++
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~--VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~ 155 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVY--VDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDT 155 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEE--EECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEE--EeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccc
Confidence 356899999997 3344444432 678888 78889999888753 13789999988763 11355
Q ss_pred cc-----eEEeccccccccch-hhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 380 MD-----LIHTTGFMDGWLDM-LLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 380 FD-----lVis~~~L~h~~~~-~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
|| .|+++.+| ||.++ .....++.++.++|+|||+|+++++...
T Consensus 156 ~D~~~p~av~~~avL-H~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 156 LDLTRPVALTVIAIV-HFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp CCTTSCCEEEEESCG-GGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cCcCCcchHHhhhhH-hcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 66 58889999 55544 3356899999999999999999887654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.1e-10 Score=116.80 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=73.6
Q ss_pred eEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||||||+|.++..+++.+ ..|++ +|+++ +++.+++ .+ .+.++.+|+..++++ ++||+|+++..++|
T Consensus 161 ~VLDiGcGtG~la~~la~~~~~~V~g--vD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~ 236 (480)
T 3b3j_A 161 IVLDVGCGSGILSFFAAQAGARKIYA--VEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM 236 (480)
T ss_dssp EEEEESCSTTHHHHHHHHTTCSEEEE--EECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHH
T ss_pred EEEEecCcccHHHHHHHHcCCCEEEE--EEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHh
Confidence 89999999999999999885 48999 45555 6665543 23 478999999887764 68999999888766
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+.... ....+.++.++|||||.+++
T Consensus 237 ~~~e~-~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 237 LFNER-MLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HTCHH-HHHHHHHGGGGEEEEEEEES
T ss_pred cCcHH-HHHHHHHHHHhcCCCCEEEE
Confidence 66543 45677789999999999985
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-08 Score=98.11 Aligned_cols=131 Identities=14% Similarity=-0.025 Sum_probs=93.8
Q ss_pred HHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCC
Q 012235 306 LISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d 377 (467)
.+..+.. +.++. +|||||||+|.++..+++.+.....+++|+++.+++.|.++ + .+.+..+|......++
T Consensus 11 RL~~i~~~v~~g~--~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~ 88 (244)
T 3gnl_A 11 RLEKVASYITKNE--RIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKK 88 (244)
T ss_dssp HHHHHHTTCCSSE--EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG
T ss_pred HHHHHHHhCCCCC--EEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcc
Confidence 3444444 33454 89999999999999999987543333477778888777653 3 3788899877655444
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
..||+|+.....- ..+..++.+..+.|+++|+|++... ...+.+.+.+...||..+.=...
T Consensus 89 ~~~D~IviagmGg-----~lI~~IL~~~~~~L~~~~~lIlq~~----~~~~~lr~~L~~~Gf~i~~E~lv 149 (244)
T 3gnl_A 89 DAIDTIVIAGMGG-----TLIRTILEEGAAKLAGVTKLILQPN----IAAWQLREWSEQNNWLITSEAIL 149 (244)
T ss_dssp GCCCEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEES----SCHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccEEEEeCCch-----HHHHHHHHHHHHHhCCCCEEEEEcC----CChHHHHHHHHHCCCEEEEEEEE
Confidence 4699988754431 1245789999999999999999653 34568889999999987654443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.3e-10 Score=105.87 Aligned_cols=95 Identities=12% Similarity=0.109 Sum_probs=74.0
Q ss_pred eEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCC-c-cCCCccceEEec
Q 012235 320 IGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRL-P-FFDNTMDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~L-p-f~d~sFDlVis~ 386 (467)
+|||||||+|..+..|++. +..|++ +|+++.+++.++++ + .+.++++|+..+ + +.+++||+|++.
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTC--IDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEE--ECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 8999999999999999874 578888 77888888777542 2 377888886554 2 336899999987
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.... ....++.++.++|||||.+++.+..+
T Consensus 137 ~~~~------~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSPM------DLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCTT------THHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcHH------HHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 6542 13568999999999999999976654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-10 Score=109.87 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=76.9
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHH----HHHHHcC---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFN----EMIALRG---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l----~~a~~rg---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||||||+|..+..+++. +..|+++|++ +.++ +.+...+ .+.++++|+... +
T Consensus 51 ~l~~l~~~~~~~--~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~--~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 126 (242)
T 3r3h_A 51 FMQMLIRLTRAK--KVLELGTFTGYSALAMSLALPDDGQVITCDIN--EGWTKHAHPYWREAKQEHKIKLRLGPALDTLH 126 (242)
T ss_dssp HHHHHHHHHTCS--EEEEEESCCSHHHHHHHHTSCTTCEEEEEECC--CSSCCCSHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHhhcCcC--EEEEeeCCcCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 344444444444 8999999999999999984 6789996554 4333 3333333 478999987654 2
Q ss_pred cC-----CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 FF-----DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 f~-----d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
.. +++||+|++.... .....++.++.++|||||.+++.+..+.
T Consensus 127 ~~~~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 127 SLLNEGGEHQFDFIFIDADK------TNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp HHHHHHCSSCEEEEEEESCG------GGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred HHhhccCCCCEeEEEEcCCh------HHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 22 5899999987653 1235789999999999999999877653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.6e-09 Score=111.64 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=94.2
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCc-
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLP- 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lp- 374 (467)
..+..++...++. +|||+|||+|..+..+++. ...|++ +|+++.+++.+.++ +. +.++++|+..++
T Consensus 95 ~l~~~~L~~~~g~--~VLDlcaGpGgkt~~lA~~~~~~g~V~A--vDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~ 170 (456)
T 3m4x_A 95 MIVGTAAAAKPGE--KVLDLCAAPGGKSTQLAAQMKGKGLLVT--NEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP 170 (456)
T ss_dssp HHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEE--ECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH
T ss_pred HHHHHHcCCCCCC--EEEEECCCcCHHHHHHHHHcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh
Confidence 4556677777777 9999999999999999876 357888 77778777766542 43 667778877765
Q ss_pred cCCCccceEEeccc------ccc-------ccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHHH
Q 012235 375 FFDNTMDLIHTTGF------MDG-------WLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYMF 434 (467)
Q Consensus 375 f~d~sFDlVis~~~------L~h-------~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~i 434 (467)
..+++||+|++... +.+ |... .....++.++.++|||||.|++++.....++ .+.+..++
T Consensus 171 ~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l 250 (456)
T 3m4x_A 171 HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLV 250 (456)
T ss_dssp HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHH
Confidence 34689999998532 111 1110 0113789999999999999999887665444 43666777
Q ss_pred HHcCceee
Q 012235 435 LQFRYKKH 442 (467)
Q Consensus 435 ~~~Gf~~l 442 (467)
++.+|+.+
T Consensus 251 ~~~~~~l~ 258 (456)
T 3m4x_A 251 ENYPVTIE 258 (456)
T ss_dssp HHSSEEEE
T ss_pred HhCCCEEE
Confidence 77776443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.3e-09 Score=96.98 Aligned_cols=107 Identities=11% Similarity=-0.034 Sum_probs=78.0
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|||+|||+|.++..+++.+. .|++ +|+++.+++.++++- .+.++++|+..++ ++||+|+++..++++... .
T Consensus 54 ~vlD~gcG~G~~~~~l~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~-~ 127 (200)
T 1ne2_A 54 SVIDAGTGNGILACGSYLLGAESVTA--FDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKH-S 127 (200)
T ss_dssp EEEEETCTTCHHHHHHHHTTBSEEEE--EESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC--------
T ss_pred EEEEEeCCccHHHHHHHHcCCCEEEE--EECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCc-h
Confidence 899999999999999998865 5888 777889999888764 4889999988875 789999999998555432 2
Q ss_pred HHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR 438 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G 438 (467)
...++.++.++| |+.+++... ...+.+.+.+...|
T Consensus 128 ~~~~l~~~~~~~--g~~~~~~~~----~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 128 DRAFIDKAFETS--MWIYSIGNA----KARDFLRREFSARG 162 (200)
T ss_dssp CHHHHHHHHHHE--EEEEEEEEG----GGHHHHHHHHHHHE
T ss_pred hHHHHHHHHHhc--CcEEEEEcC----chHHHHHHHHHHCC
Confidence 247899999998 554443322 23445666677766
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=101.75 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=73.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-C-------CEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCCC
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-N-------VTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQRL 373 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g-------~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~L 373 (467)
+.++. +|||+|||+|.++..+++. + ..|++ +|+++.+++.++++ ..+.++.+|...
T Consensus 82 ~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~- 156 (227)
T 1r18_A 82 LKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVG--IEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK- 156 (227)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEE--EESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-
T ss_pred CCCCC--EEEEECCCccHHHHHHHHhcccccCCccCEEEE--EEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-
Confidence 55555 8999999999999999885 4 47888 67778887776542 347788888776
Q ss_pred ccCC-CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 374 PFFD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 374 pf~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
++++ ++||+|++..++.++ ..++.++|||||.+++...
T Consensus 157 ~~~~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 157 GYPPNAPYNAIHVGAAAPDT---------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp CCGGGCSEEEEEECSCBSSC---------CHHHHHTEEEEEEEEEEES
T ss_pred CCCcCCCccEEEECCchHHH---------HHHHHHHhcCCCEEEEEEe
Confidence 4444 789999999988433 3678999999999999654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=105.67 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=78.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||+|||+|.++..+++.+. .|++ +|+++.+++.++++ + .+.++.+|+..++. +++||+|+
T Consensus 117 ~~~~~--~VLDlgcG~G~~s~~la~~~~~~~V~~--vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi 191 (272)
T 3a27_A 117 SNENE--VVVDMFAGIGYFTIPLAKYSKPKLVYA--IEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVI 191 (272)
T ss_dssp CCTTC--EEEETTCTTTTTHHHHHHHTCCSEEEE--EECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEE
T ss_pred cCCCC--EEEEecCcCCHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEE
Confidence 55555 899999999999999998843 8888 77788888777642 3 36788999888744 67899999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+.... . ...++.++.++|+|||.+++..+....
T Consensus 192 ~d~p~----~---~~~~l~~~~~~LkpgG~l~~s~~~~~~ 224 (272)
T 3a27_A 192 MGYVH----K---THKFLDKTFEFLKDRGVIHYHETVAEK 224 (272)
T ss_dssp ECCCS----S---GGGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred ECCcc----c---HHHHHHHHHHHcCCCCEEEEEEcCccc
Confidence 98764 1 246899999999999999987765533
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.7e-09 Score=110.94 Aligned_cols=133 Identities=14% Similarity=0.186 Sum_probs=92.9
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCc-c
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLP-F 375 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lp-f 375 (467)
..+..++...++. +|||+|||+|..+..+++. ...|++ +|+++.+++.+.++ +. +.++++|+..++ +
T Consensus 91 ~l~a~~L~~~~g~--~VLDlgaGpG~kt~~LA~~~~~~g~V~A--vDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~ 166 (464)
T 3m6w_A 91 QAVGVLLDPKPGE--RVLDLAAAPGGKTTHLAARMGGKGLLLA--NEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEA 166 (464)
T ss_dssp HHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEE--ECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHH
T ss_pred HHHHHhcCcCCCC--EEEEEcCCcCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhh
Confidence 4455677777777 9999999999999999976 257877 77888888777543 33 677788877776 3
Q ss_pred CCCccceEEeccc------cc-------cccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHHHH
Q 012235 376 FDNTMDLIHTTGF------MD-------GWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYMFL 435 (467)
Q Consensus 376 ~d~sFDlVis~~~------L~-------h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~i~ 435 (467)
.+++||+|++... +. +|... .....++.++.++|||||.|++++.....++ .+.+..+++
T Consensus 167 ~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~ 246 (464)
T 3m6w_A 167 FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLK 246 (464)
T ss_dssp HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHH
Confidence 5789999996321 11 11110 0125789999999999999999887665443 335556666
Q ss_pred Hc-Ccee
Q 012235 436 QF-RYKK 441 (467)
Q Consensus 436 ~~-Gf~~ 441 (467)
+. +|+.
T Consensus 247 ~~~~~~l 253 (464)
T 3m6w_A 247 AHPEFRL 253 (464)
T ss_dssp HCTTEEE
T ss_pred HCCCcEE
Confidence 65 4543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=105.82 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=78.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||||||+|..+..+++. +..+++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 70 ll~~l~~~~~~~--~VLeiG~G~G~~~~~la~~~~~~~~v~~--iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 145 (247)
T 1sui_A 70 FLSMLLKLINAK--NTMEIGVYTGYSLLATALAIPEDGKILA--MDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD 145 (247)
T ss_dssp HHHHHHHHTTCC--EEEEECCGGGHHHHHHHHHSCTTCEEEE--EESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHhhCcC--EEEEeCCCcCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHH
Confidence 344444544444 8999999999999999886 678888 66667777766542 3 367888887553 3
Q ss_pred c------CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 375 F------FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 375 f------~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
. .+++||+|++..... ....++.++.++|||||.+++.+..+
T Consensus 146 ~l~~~~~~~~~fD~V~~d~~~~------~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 146 EMIKDEKNHGSYDFIFVDADKD------NYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp HHHHSGGGTTCBSEEEECSCST------THHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred HHHhccCCCCCEEEEEEcCchH------HHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 2 267899999875431 24678999999999999999976544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=104.00 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=79.0
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||||||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++.+|.... +
T Consensus 51 ~l~~l~~~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 126 (239)
T 2hnk_A 51 FLNILTKISGAK--RIIEIGTFTGYSSLCFASALPEDGKILC--CDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQ 126 (239)
T ss_dssp HHHHHHHHHTCS--EEEEECCTTCHHHHHHHHHSCTTCEEEE--EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHhhCcC--EEEEEeCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHH
Confidence 344555555555 8999999999999999987 578888 66778887777653 3 267888876442 2
Q ss_pred --------------cCC--CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 375 --------------FFD--NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 375 --------------f~d--~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
|++ ++||+|++..... ....++.++.++|||||.+++.+...
T Consensus 127 ~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 127 VLIDSKSAPSWASDFAFGPSSIDLFFLDADKE------NYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp HHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG------GHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred HHHhhcccccccccccCCCCCcCEEEEeCCHH------HHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 222 7899999886542 13578999999999999999987544
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-08 Score=95.09 Aligned_cols=139 Identities=14% Similarity=0.083 Sum_probs=94.4
Q ss_pred HHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCC-CCccCC
Q 012235 307 ISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQ-RLPFFD 377 (467)
Q Consensus 307 I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~-~Lpf~d 377 (467)
+..+.. +.++. +|||||||+|.++..+++.+.....+++|+++.+++.+.++ + .+.+..+|.. .++. .
T Consensus 6 L~~l~~~v~~g~--~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~ 82 (225)
T 3kr9_A 6 LELVASFVSQGA--ILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-T 82 (225)
T ss_dssp HHHHHTTSCTTE--EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-G
T ss_pred HHHHHHhCCCCC--EEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-C
Confidence 334444 33454 89999999999999999987543333477778887777543 3 3778888864 3432 2
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLS 457 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~ 457 (467)
..||+|+....- ...+..++.+..+.|+|+|+|++... .....+.+.+...||..+.=..... ++.+|-.
T Consensus 83 ~~~D~IviaG~G-----g~~i~~Il~~~~~~L~~~~~lVlq~~----~~~~~vr~~L~~~Gf~i~~e~lv~e-~~~~Yei 152 (225)
T 3kr9_A 83 DQVSVITIAGMG-----GRLIARILEEGLGKLANVERLILQPN----NREDDLRIWLQDHGFQIVAESILEE-AGKFYEI 152 (225)
T ss_dssp GCCCEEEEEEEC-----HHHHHHHHHHTGGGCTTCCEEEEEES----SCHHHHHHHHHHTTEEEEEEEEEEE-TTEEEEE
T ss_pred cCCCEEEEcCCC-----hHHHHHHHHHHHHHhCCCCEEEEECC----CCHHHHHHHHHHCCCEEEEEEEEEE-CCEEEEE
Confidence 269998875543 11145789999999999999998553 3556888899999998776544332 2344443
Q ss_pred E
Q 012235 458 A 458 (467)
Q Consensus 458 a 458 (467)
.
T Consensus 153 i 153 (225)
T 3kr9_A 153 L 153 (225)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-09 Score=107.04 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=75.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~s 379 (467)
+.+.+.+.++. +|||||||+|.++..+++++..|++ +|+++.+++.+.++ ..+.++++|+..++++ +
T Consensus 20 i~~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~ 93 (285)
T 1zq9_A 20 IIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAKKVVA--CELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--F 93 (285)
T ss_dssp HHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSSEEEE--EESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--C
T ss_pred HHHhcCCCCCC--EEEEEcCcccHHHHHHHhhCCEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--h
Confidence 34445555555 8999999999999999999989999 66778888877654 2377899999887764 7
Q ss_pred cceEEeccccccccchhhHHHHH--------------HHH--HhccCCCcEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFIL--------------FDW--DRILRPGGLLW 416 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L--------------~el--~RvLKPGG~Li 416 (467)
||+|+++... +|..+. +..++ .|+ .++|+|||.++
T Consensus 94 fD~vv~nlpy-~~~~~~-~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 94 FDTCVANLPY-QISSPF-VFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CSEEEEECCG-GGHHHH-HHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hcEEEEecCc-ccchHH-HHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 9999998776 666542 12233 233 36999999863
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.2e-09 Score=105.54 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=84.9
Q ss_pred eEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC-Ccc-CCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR-LPF-FDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~-Lpf-~d~sFDlVis~~~L 389 (467)
+|||+| |+|.++..++..+. .|++ +|+++.+++.++++ + .+.++++|+.. +|. .+++||+|+++..+
T Consensus 175 ~VLDlG-G~G~~~~~la~~~~~~~v~~--vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 175 DIFVLG-DDDLTSIALMLSGLPKRIAV--LDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp EEEEES-CTTCHHHHHHHHTCCSEEEE--ECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred EEEEEC-CCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 899999 99999999988764 7777 78888888887654 4 47899999888 764 46789999999776
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEE-EEEecccCCCCH---HHHHHHHH-HcCcee
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLL-WIDRFFCNKKDL---DDYMYMFL-QFRYKK 441 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~L-iI~~~~~~~~~~---~~~~~~i~-~~Gf~~ 441 (467)
. ... ...++.++.++|||||.+ +++.. ...... ..+.+.+. +.|+..
T Consensus 252 ~-~~~---~~~~l~~~~~~LkpgG~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~ 303 (373)
T 2qm3_A 252 T-LEA---IRAFVGRGIATLKGPRCAGYFGIT-RRESSLDKWREIQKLLLNEFNVVI 303 (373)
T ss_dssp S-HHH---HHHHHHHHHHTBCSTTCEEEEEEC-TTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred c-hHH---HHHHHHHHHHHcccCCeEEEEEEe-cCcCCHHHHHHHHHHHHHhcCcch
Confidence 3 222 368999999999999954 44433 222333 45566676 777754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-09 Score=102.01 Aligned_cols=106 Identities=21% Similarity=0.146 Sum_probs=77.9
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCC----C
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQR----L 373 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~----L 373 (467)
..++...++. +|||||||+|..+..+++. +..+++ +|+++.+++.++++ + .+.++.+++.. +
T Consensus 65 ~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l 140 (232)
T 3cbg_A 65 GLLISLTGAK--QVLEIGVFRGYSALAMALQLPPDGQIIA--CDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQL 140 (232)
T ss_dssp HHHHHHHTCC--EEEEECCTTSHHHHHHHTTSCTTCEEEE--EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHhcCCC--EEEEecCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence 3344444444 8999999999999999986 567888 67778887777543 3 37788888543 3
Q ss_pred ccCC--CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 374 PFFD--NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 374 pf~d--~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+..+ ++||+|++.... .....++.++.++|||||.+++.+..+.
T Consensus 141 ~~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 141 TQGKPLPEFDLIFIDADK------RNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp HTSSSCCCEEEEEECSCG------GGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred HhcCCCCCcCEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 3333 789999987653 1246789999999999999999876553
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-09 Score=101.74 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=77.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||+|||+|..+..+++. +..+++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 60 ~l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 135 (229)
T 2avd_A 60 LLANLARLIQAK--KALDLGTFTGYSALALALALPADGRVVT--CEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLD 135 (229)
T ss_dssp HHHHHHHHTTCC--EEEEECCTTSHHHHHHHTTSCTTCEEEE--EESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC--EEEEEcCCccHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHH
Confidence 344444555555 8999999999999999986 568888 66667777766543 3 477888886543 1
Q ss_pred -cCC----CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 375 -FFD----NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 375 -f~d----~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+.+ ++||+|++.... .....++.++.++|+|||.+++.+...
T Consensus 136 ~~~~~~~~~~~D~v~~d~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 136 ELLAAGEAGTFDVAVVDADK------ENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp HHHHTTCTTCEEEEEECSCS------TTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred HHHhcCCCCCccEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 211 789999997653 123578999999999999999977654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-08 Score=93.27 Aligned_cols=112 Identities=8% Similarity=0.045 Sum_probs=81.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
+|||+|||+|.++..+++.+. .+++ +|+++.+++.+.++ + .+.++++|+..++ ++||+|+++..+..+.
T Consensus 52 ~vlD~g~G~G~~~~~l~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 52 VVADLGAGTGVLSYGALLLGAKEVIC--VEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQR 126 (207)
T ss_dssp EEEEETCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSSS
T ss_pred EEEEeeCCCCHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcccc
Confidence 899999999999999999865 6888 77788888888764 2 4788899988864 5899999998874433
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
. .....++.++.++| ||.+++. . ......+...+.++..||..
T Consensus 127 ~-~~~~~~l~~~~~~l--~~~~~~~-~-~~~~~~~~~~~~l~~~g~~~ 169 (207)
T 1wy7_A 127 K-HADRPFLLKAFEIS--DVVYSIH-L-AKPEVRRFIEKFSWEHGFVV 169 (207)
T ss_dssp T-TTTHHHHHHHHHHC--SEEEEEE-E-CCHHHHHHHHHHHHHTTEEE
T ss_pred C-CchHHHHHHHHHhc--CcEEEEE-e-CCcCCHHHHHHHHHHCCCeE
Confidence 2 22357889999998 5544432 1 12223345667788888754
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=9.2e-09 Score=103.00 Aligned_cols=120 Identities=12% Similarity=0.014 Sum_probs=84.9
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCC-CccCCCccceEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQR-LPFFDNTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~-Lpf~d~sFDlVi 384 (467)
++|||||||+|.++..++++ +.++++ +|+++.+++.++++ ..+.++.+|+.. ++..+++||+|+
T Consensus 79 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHPTVEKAVM--VDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTSTTCCEEEE--EESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CeEEEEcCCcCHHHHHHHhcCCCCEEEE--EECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 48999999999999999987 457888 66777887777542 237788898766 344578999999
Q ss_pred eccccccc---cchhh--HHHHHHHHHhccCCCcEEEEEeccc---CCCCHHHHHHHHHHcCceee
Q 012235 385 TTGFMDGW---LDMLL--LDFILFDWDRILRPGGLLWIDRFFC---NKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 385 s~~~L~h~---~~~~~--l~~~L~el~RvLKPGG~LiI~~~~~---~~~~~~~~~~~i~~~Gf~~l 442 (467)
+.... ++ .+... ...++.++.++|||||.+++..... ..+....+.+.++.. |..+
T Consensus 157 ~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v 220 (314)
T 1uir_A 157 IDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYV 220 (314)
T ss_dssp EECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEE
T ss_pred ECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCce
Confidence 98765 54 22111 2578999999999999999864322 122233566666666 5444
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-08 Score=106.35 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=90.8
Q ss_pred HHHHHhcCC--CCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc
Q 012235 306 LISDILAIK--PGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP 374 (467)
Q Consensus 306 ~I~~lL~l~--~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp 374 (467)
.+..++... ++. +|||+|||+|..+..+++. +..|++ +|+++.+++.+.++ + .+.++++|+..++
T Consensus 106 l~~~~L~~~~~~g~--~VLDl~aGpG~kt~~lA~~~~~~g~V~a--vDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~ 181 (479)
T 2frx_A 106 LPVAALFADGNAPQ--RVMDVAAAPGSKTTQISARMNNEGAILA--NEFSASRVKVLHANISRCGISNVALTHFDGRVFG 181 (479)
T ss_dssp HHHHHHTTTTCCCS--EEEESSCTTSHHHHHHHHHTTTCSEEEE--ECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHH
T ss_pred HHHHHhCcccCCCC--EEEEeCCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhh
Confidence 344566666 666 8999999999999999986 357888 77888888777543 3 3678888988876
Q ss_pred c-CCCccceEEecc------ccc-------cccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHH
Q 012235 375 F-FDNTMDLIHTTG------FMD-------GWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYM 433 (467)
Q Consensus 375 f-~d~sFDlVis~~------~L~-------h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~ 433 (467)
. .+++||.|++.. ++. +|... .....++.++.++|||||+|++++.....++ .+.+..+
T Consensus 182 ~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~ 261 (479)
T 2frx_A 182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWL 261 (479)
T ss_dssp HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHH
T ss_pred hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHH
Confidence 4 568999999831 121 12111 0124689999999999999999887664443 3355556
Q ss_pred HHHcC
Q 012235 434 FLQFR 438 (467)
Q Consensus 434 i~~~G 438 (467)
+++.+
T Consensus 262 l~~~~ 266 (479)
T 2frx_A 262 KETYP 266 (479)
T ss_dssp HHHST
T ss_pred HHHCC
Confidence 66653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-09 Score=105.72 Aligned_cols=121 Identities=12% Similarity=0.039 Sum_probs=81.4
Q ss_pred ceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCC-CccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQR-LPFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~-Lpf~d~sFDlVis 385 (467)
++|||||||+|.++..++++. .++++ +|+++.+++.++++ ..+.++.+|+.. ++..+++||+|++
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 97 RKVLIIGGGDGGVLREVVKHPSVESVVQ--CEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEE--EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CEEEEECCCchHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 489999999999999999874 57888 66778888877642 237788888765 3445789999999
Q ss_pred ccccccccchh--hHHHHHHHHHhccCCCcEEEEEecc--cCCCCHHHHHHHHHHcCceeeE
Q 012235 386 TGFMDGWLDML--LLDFILFDWDRILRPGGLLWIDRFF--CNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 386 ~~~L~h~~~~~--~l~~~L~el~RvLKPGG~LiI~~~~--~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
.... ++.... ....++.++.++|||||.+++.... ...+....+.+.+++. |..+.
T Consensus 175 d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~ 234 (304)
T 2o07_A 175 DSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVA 234 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHh-CCCce
Confidence 7654 332211 1246899999999999999986532 2211122455555555 54443
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=6e-09 Score=107.36 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=72.1
Q ss_pred CCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHH----HHcC---CccEEEccCCCCccCCCccceEEec
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMI----ALRG---LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a----~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
++. +|||||||+|.++...++.|. .|++++.+. +++.| +.++ .|.++.++++.+.++ +.||+|+|.
T Consensus 83 ~~k--~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~---~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE 156 (376)
T 4hc4_A 83 RGK--TVLDVGAGTGILSIFCAQAGARRVYAVEASA---IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSE 156 (376)
T ss_dssp TTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECST---THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CCC--EEEEeCCCccHHHHHHHHhCCCEEEEEeChH---HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEee
Confidence 454 899999999999998888875 699966542 33333 3344 388999999998875 689999995
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
..-........+..++....|.|||||.++-
T Consensus 157 ~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 157 WMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccccccccchhhhHHHHHHhhCCCCceECC
Confidence 4432233333467889999999999999864
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=103.21 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=73.6
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-c-cCCCccceEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-P-FFDNTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-p-f~d~sFDlVi 384 (467)
++|||||||+|.++..+++. +.+|++ +|+++.+++.++++ ..+.++++|+..+ + ..+++||+|+
T Consensus 122 ~~VLdIG~G~G~~a~~la~~~~~~~V~~--VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 122 KKVLVIGGGDGGVLREVARHASIEQIDM--CEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CEEEEETCSSSHHHHHHTTCTTCCEEEE--EESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CEEEEECCCccHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 48999999999999999987 467888 67778888877643 2478889987654 2 3467899999
Q ss_pred eccccc-cccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 385 TTGFMD-GWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 385 s~~~L~-h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+..... +.........++.++.++|+|||.|++.
T Consensus 200 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 200 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 975421 1111111258999999999999999996
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=103.07 Aligned_cols=116 Identities=11% Similarity=0.062 Sum_probs=86.3
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEec
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
.++. +|||+|||+|.++.. ++.+..|++ +|+++.+++.++++ + .+.++++|+..+. ++||+|+++
T Consensus 194 ~~~~--~VLDlg~G~G~~~l~-a~~~~~V~~--vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~d 265 (336)
T 2yx1_A 194 SLND--VVVDMFAGVGPFSIA-CKNAKKIYA--IDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMN 265 (336)
T ss_dssp CTTC--EEEETTCTTSHHHHH-TTTSSEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred CCCC--EEEEccCccCHHHHh-ccCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEEC
Confidence 4555 899999999999999 886778888 77778887777543 3 3788999988765 889999997
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc-CceeeEEEEc
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF-RYKKHKWAIS 447 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~-Gf~~l~W~~~ 447 (467)
.... . ..++.++.++|+|||.+++.++... .+...+.+... |+....+...
T Consensus 266 pP~~--~-----~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~l~~~~~~~i~~~~~v 317 (336)
T 2yx1_A 266 LPKF--A-----HKFIDKALDIVEEGGVIHYYTIGKD---FDKAIKLFEKKCDCEVLEKRIV 317 (336)
T ss_dssp CTTT--G-----GGGHHHHHHHEEEEEEEEEEEEESS---SHHHHHHHHHHSEEEEEEEEEE
T ss_pred CcHh--H-----HHHHHHHHHHcCCCCEEEEEEeecC---chHHHHHHHHhcCCcEEEEEEE
Confidence 4331 1 2578999999999999999777655 33556666665 6665544433
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.3e-09 Score=104.22 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=83.5
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-ccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-PFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-pf~d~sFDlVis 385 (467)
++|||||||+|.++..+++. +..|++ +|+++.+++.++++ ..+.++++|+... +..+++||+|++
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSVENIDI--CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTCCEEEE--EESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 38999999999999999987 467888 67778888888653 1367888887653 334678999998
Q ss_pred ccccccccchhhH--HHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceee
Q 012235 386 TGFMDGWLDMLLL--DFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 386 ~~~L~h~~~~~~l--~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l 442 (467)
+..- ++.....+ ..++.++.++|||||.+++..... ..+....+.+.+++. |..+
T Consensus 196 d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v 254 (321)
T 2pt6_A 196 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKV 254 (321)
T ss_dssp ECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred CCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCe
Confidence 7642 33221111 578999999999999999965322 112233555566655 5443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-08 Score=100.18 Aligned_cols=121 Identities=13% Similarity=0.077 Sum_probs=84.1
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-ccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-PFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-pf~d~sFDlVis 385 (467)
++|||||||+|.++..+++. +..+++ +|+++.+++.+++. ..+.++++|+... +..+++||+|++
T Consensus 80 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 80 KNVLVVGGGDGGIIRELCKYKSVENIDI--CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEE--EESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CeEEEEeCCcCHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 48999999999999999987 357888 66778888887653 2367888887653 333688999999
Q ss_pred ccccccccchhhH--HHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceeeE
Q 012235 386 TGFMDGWLDMLLL--DFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 386 ~~~L~h~~~~~~l--~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
.... ++.....+ ..++.++.++|+|||.+++..... ..+....+.+.+++. |..+.
T Consensus 158 d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~ 217 (283)
T 2i7c_A 158 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVE 217 (283)
T ss_dssp ECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEE
T ss_pred cCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH-CCceE
Confidence 6544 33322222 589999999999999999864321 112223455555555 55443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.9e-09 Score=105.37 Aligned_cols=120 Identities=12% Similarity=0.003 Sum_probs=80.0
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCC-CccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQR-LPFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~-Lpf~d~sFDlVis 385 (467)
++|||||||+|.++..+++. +..|++ +|+++.+++.++++ ..+.++.+|+.. ++..+++||+|++
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~~~~~v~~--vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHESVEKVTM--CEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCTTCCEEEE--ECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 48999999999999999987 467888 77888888888753 136788888765 3445688999998
Q ss_pred ccccccccchhhH--HHHHHHHHhccCCCcEEEEEecc--cCCCCHHHHHHHHHHcCceee
Q 012235 386 TGFMDGWLDMLLL--DFILFDWDRILRPGGLLWIDRFF--CNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 386 ~~~L~h~~~~~~l--~~~L~el~RvLKPGG~LiI~~~~--~~~~~~~~~~~~i~~~Gf~~l 442 (467)
...- ++.+...+ ..++.++.++|+|||.+++..-. ...+....+.+.++.. |..+
T Consensus 188 d~~~-~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v 246 (314)
T 2b2c_A 188 DSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAV 246 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEE
T ss_pred cCCC-CCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH-CCcc
Confidence 7643 43332222 57899999999999999996521 1111222455566665 5443
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.9e-09 Score=103.81 Aligned_cols=119 Identities=15% Similarity=0.100 Sum_probs=84.1
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCC--ccCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRL--PFFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~L--pf~d~sFDlVis~~~L 389 (467)
+|||||||+|.++..++++ +..+++ +|+++.+++.+++. ..+.++++|+..+ .+.+++||+|++....
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~--VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTV--VELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEE--EESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEE--EECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 8999999999999999983 677877 77778899988764 2377889987665 2446899999996543
Q ss_pred ccccchhh--HHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHHHHHcCceee
Q 012235 390 DGWLDMLL--LDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYMFLQFRYKKH 442 (467)
Q Consensus 390 ~h~~~~~~--l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~i~~~Gf~~l 442 (467)
++..... ...++.++.++|||||.|++......... ...+.+.+++. |..+
T Consensus 170 -~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v 223 (317)
T 3gjy_A 170 -GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-FEHV 223 (317)
T ss_dssp -TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEE
T ss_pred -ccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH-CCce
Confidence 2211111 15799999999999999988664332211 22455566655 5444
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-08 Score=99.41 Aligned_cols=120 Identities=9% Similarity=-0.008 Sum_probs=83.8
Q ss_pred ceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCC-CccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQR-LPFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~-Lpf~d~sFDlVis 385 (467)
++|||||||+|.++..++++ + ..|++ +|+++.+++.+++. ..+.++.+|+.. ++..+++||+|++
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 77 EHVLVVGGGDGGVIREILKHPSVKKATL--VDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp CEEEEESCTTCHHHHHHTTCTTCSEEEE--EESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CEEEEECCchHHHHHHHHhCCCCceEEE--EECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 48999999999999999987 4 57888 66678888877652 237788998765 3444689999999
Q ss_pred ccccccccchhh--HHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceee
Q 012235 386 TGFMDGWLDMLL--LDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 386 ~~~L~h~~~~~~--l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l 442 (467)
.... ++..... ...++.++.++|+|||.+++..... ..+....+.+.+++. |..+
T Consensus 155 d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v 213 (275)
T 1iy9_A 155 DSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPIT 213 (275)
T ss_dssp SCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCe
Confidence 7654 3322100 1478999999999999999864321 112223555666666 5543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-08 Score=99.64 Aligned_cols=120 Identities=9% Similarity=-0.019 Sum_probs=80.8
Q ss_pred ceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc----------------CCccEEEccCCCC-ccCCCcc
Q 012235 319 RIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR----------------GLIPLYVTLNQRL-PFFDNTM 380 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r----------------g~i~~~~~d~~~L-pf~d~sF 380 (467)
++|||||||+|.++..+++.+ ..+++ +|+++.+++.+++. ..+.++.+|+..+ +. +++|
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~v~~--vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDVDEVIM--VEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCCSEEEE--EESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CeEEEEcCCcCHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 389999999999999999884 47888 66778888777643 1367888886543 33 6789
Q ss_pred ceEEeccccccccchhhH--HHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceeeE
Q 012235 381 DLIHTTGFMDGWLDMLLL--DFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l--~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
|+|++.... ++.....+ ..++.++.++|+|||.+++..... ..+....+.+.++.. |..+.
T Consensus 154 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~ 218 (281)
T 1mjf_A 154 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVY 218 (281)
T ss_dssp EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEE
T ss_pred eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCceE
Confidence 999997654 33322111 578999999999999999864321 111223455555555 54443
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-08 Score=99.09 Aligned_cols=120 Identities=9% Similarity=-0.039 Sum_probs=80.6
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCC-CccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQR-LPFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~-Lpf~d~sFDlVis 385 (467)
.+|||||||+|.++..+++. ..+|++ +|+++.+++.++++ ..+.++++|+.. ++..+++||+|++
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVEKAIL--CEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCSEEEE--EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCCEEEE--EECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 48999999999999999987 367888 66778888777543 237788888665 3445688999998
Q ss_pred ccccccccc-hh--hHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceee
Q 012235 386 TGFMDGWLD-ML--LLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 386 ~~~L~h~~~-~~--~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l 442 (467)
...- ++.. .. ....++.++.++|||||.+++..... ..+....+.+.+++. |..+
T Consensus 170 d~~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v 229 (296)
T 1inl_A 170 DSTD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPIT 229 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEE
T ss_pred cCCC-cccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCce
Confidence 6542 3111 10 01578999999999999999964321 122233555566665 5443
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=100.60 Aligned_cols=143 Identities=14% Similarity=0.035 Sum_probs=90.9
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHH---HcC-CccEEEccCCCCccCCCccceEE
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQ-NV-TIVSTALNLGAPFNEMIA---LRG-LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~---~rg-~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
..++++. +|||+|||+|.|+..++++ ++ .+.++ |++..+..... ..+ .+..+..+++...+.++.||+|+
T Consensus 70 ~~l~~~~--~VLDLGaAPGGWSQvAa~~~~~~~v~g~--dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVl 145 (277)
T 3evf_A 70 GYVKLEG--RVIDLGCGRGGWCYYAAAQKEVSGVKGF--TLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLL 145 (277)
T ss_dssp TSSCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEE--CCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEE
T ss_pred CCCCCCC--EEEEecCCCCHHHHHHHHhcCCCcceeE--EEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEE
Confidence 3455665 8999999999999988876 43 35553 33321100000 001 13334555555567788999999
Q ss_pred eccccc---cccchhhHHHHHHHHHhccCCC-cEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc--cCCCCceEEEE
Q 012235 385 TTGFMD---GWLDMLLLDFILFDWDRILRPG-GLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS--PKSKDEVYLSA 458 (467)
Q Consensus 385 s~~~L~---h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~--~k~~devyl~a 458 (467)
|..+.. ++.+....-.++..+.++|+|| |.|++..|-.-..+...+.+.+++. |..+.+... .....|+|+.+
T Consensus 146 sD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~-F~~V~~~KPaSR~~S~E~Y~V~ 224 (277)
T 3evf_A 146 CDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRR-FGGTVIRNPLSRNSTHEMYYVS 224 (277)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH-HCCEEECCTTSCTTCCCEEEES
T ss_pred ecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHh-cCCEEEEeCCCCCCCCceEEEE
Confidence 988663 2444422224578889999999 9999966654355555777778777 777766544 12455788865
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.7e-09 Score=98.94 Aligned_cols=107 Identities=14% Similarity=0.067 Sum_probs=78.2
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||||||+|..+..+++. +..+++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 61 ~l~~l~~~~~~~--~VLeiG~G~G~~~~~la~~~~~~~~v~~--iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 136 (237)
T 3c3y_A 61 LMSFVLKLVNAK--KTIEVGVFTGYSLLLTALSIPDDGKITA--IDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALD 136 (237)
T ss_dssp HHHHHHHHTTCC--EEEEECCTTSHHHHHHHHHSCTTCEEEE--EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHhhCCC--EEEEeCCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 344444444444 8999999999999999876 678888 66778877777542 3 267888886543 3
Q ss_pred -c-----CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 375 -F-----FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 375 -f-----~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+ .+++||+|++.... . ....++.++.++|||||.+++++..+
T Consensus 137 ~l~~~~~~~~~fD~I~~d~~~----~--~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 137 NLLQGQESEGSYDFGFVDADK----P--NYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp HHHHSTTCTTCEEEEEECSCG----G--GHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred HHHhccCCCCCcCEEEECCch----H--HHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 2 25789999986532 1 24678999999999999999976543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-08 Score=99.47 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=71.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.+.++. +|||+|||+|.++..+++++..|++ +|+++.+++.++++ + .+.++.+|+..+++ .+|
T Consensus 34 i~~~~~~~~~~--~VLDiG~G~G~lt~~La~~~~~v~~--vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~--~~~ 107 (299)
T 2h1r_A 34 IIYAAKIKSSD--IVLEIGCGTGNLTVKLLPLAKKVIT--IDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF--PKF 107 (299)
T ss_dssp HHHHHCCCTTC--EEEEECCTTSTTHHHHTTTSSEEEE--ECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC--CCC
T ss_pred HHHhcCCCCcC--EEEEEcCcCcHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc--ccC
Confidence 44455666665 8999999999999999999889999 77778888877653 2 47788899888775 489
Q ss_pred ceEEeccccccccchhhHHHHH---------------HHHHhccCCCcE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFIL---------------FDWDRILRPGGL 414 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L---------------~el~RvLKPGG~ 414 (467)
|+|+++... ++..+. +..++ +.+.|+++++|.
T Consensus 108 D~Vv~n~py-~~~~~~-~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~ 154 (299)
T 2h1r_A 108 DVCTANIPY-KISSPL-IFKLISHRPLFKCAVLMFQKEFAERMLANVGD 154 (299)
T ss_dssp SEEEEECCG-GGHHHH-HHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred CEEEEcCCc-ccccHH-HHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence 999998776 666542 23333 346788888773
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.2e-08 Score=101.87 Aligned_cols=126 Identities=13% Similarity=0.011 Sum_probs=84.0
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCC-cc---CCCcc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRL-PF---FDNTM 380 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~L-pf---~d~sF 380 (467)
.++. +|||+|||+|.++..+++.|. .|++ +|+++.+++.++++ + .+.++++|+..+ +. ..++|
T Consensus 211 ~~~~--~VLDl~cGtG~~sl~la~~ga~~V~~--vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 211 AAGK--TVLNLFSYTAAFSVAAAMGGAMATTS--VDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp TBTC--EEEEETCTTTHHHHHHHHTTBSEEEE--EESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCC--eEEEEeeccCHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCc
Confidence 4454 899999999999999998775 7888 66677777766542 3 467889987653 21 24589
Q ss_pred ceEEeccccc-----ccc-chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHH----HHHHHcCceeeEE
Q 012235 381 DLIHTTGFMD-----GWL-DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYM----YMFLQFRYKKHKW 444 (467)
Q Consensus 381 DlVis~~~L~-----h~~-~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~----~~i~~~Gf~~l~W 444 (467)
|+|++..... +.. ....+..++.++.++|+|||.++++.....- ..+.+. +.....|...+..
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~-~~~~~~~~i~~~~~~~g~~~~~~ 359 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM-TVSQFKKQIEKGFGKQKHTYLDL 359 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-CHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC-CHHHHHHHHHHHHHHcCCcEEEe
Confidence 9999865431 111 1122456788889999999999987654432 233333 3444556564433
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-08 Score=98.25 Aligned_cols=96 Identities=10% Similarity=0.085 Sum_probs=71.2
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCcc---ceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTM---DLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sF---DlVis~~~ 388 (467)
+|||+|||+|.++..+++. +.+|++ +|+++.+++.++++ + .+.++++|.... + .++| |+|+++..
T Consensus 126 ~vLDlG~GsG~~~~~la~~~~~~v~~--vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~-~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 126 TVADIGTGSGAIGVSVAKFSDAIVFA--TDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-F-KEKFASIEMILSNPP 201 (284)
T ss_dssp EEEEESCTTSHHHHHHHHHSSCEEEE--EESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-G-GGGTTTCCEEEECCC
T ss_pred EEEEEeCchhHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-c-ccccCCCCEEEEcCC
Confidence 8999999999999999988 778888 77888888877653 3 278889987762 3 2589 99999843
Q ss_pred ccc----------ccchhh------HHHHHHHHH-hccCCCcEEEEEe
Q 012235 389 MDG----------WLDMLL------LDFILFDWD-RILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h----------~~~~~~------l~~~L~el~-RvLKPGG~LiI~~ 419 (467)
... +.+... -..++.++. +.|+|||.+++..
T Consensus 202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 211 111100 016899999 9999999999843
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=97.81 Aligned_cols=139 Identities=18% Similarity=0.248 Sum_probs=90.9
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC----CccCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR----LPFFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~----Lpf~d~s 379 (467)
.+...++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++++|+.. +++.+++
T Consensus 281 ~l~~~~~~--~VLDlgcG~G~~~~~la~~~~~V~g--vD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~ 356 (433)
T 1uwv_A 281 WLDVQPED--RVLDLFCGMGNFTLPLATQAASVVG--VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 (433)
T ss_dssp HHTCCTTC--EEEEESCTTTTTHHHHHTTSSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTC
T ss_pred hhcCCCCC--EEEECCCCCCHHHHHHHhhCCEEEE--EeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCC
Confidence 34444555 8999999999999999999889999 77788888877643 3 37899999876 4566789
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccC--CCCceEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPK--SKDEVYLS 457 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k--~~devyl~ 457 (467)
||+|+++...... ..++..+.+ ++|++.++++ ++......-...+...||.........- .-..+=..
T Consensus 357 fD~Vv~dPPr~g~------~~~~~~l~~-~~p~~ivyvs---c~p~tlard~~~l~~~Gy~~~~~~~~d~Fp~t~HvE~v 426 (433)
T 1uwv_A 357 FDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYVS---CNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESM 426 (433)
T ss_dssp CSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEEE---SCHHHHHHHHHHHHHTTCEEEEEEEECCSTTSSCCEEE
T ss_pred CCEEEECCCCccH------HHHHHHHHh-cCCCeEEEEE---CChHHHHhhHHHHHHCCcEEEEEEEeccCCCCCeEEEE
Confidence 9999997654211 234444443 7899988873 2222233223445566887765443322 22334445
Q ss_pred EEeec
Q 012235 458 ALLEK 462 (467)
Q Consensus 458 avlqK 462 (467)
++++|
T Consensus 427 ~ll~r 431 (433)
T 1uwv_A 427 VLFSR 431 (433)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 56655
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.6e-08 Score=101.26 Aligned_cols=106 Identities=16% Similarity=0.095 Sum_probs=76.4
Q ss_pred CCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCc-cCCCccceEEeccc
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLP-FFDNTMDLIHTTGF 388 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lp-f~d~sFDlVis~~~ 388 (467)
++. +|||+|||+|.++..+++.|..|++ +|+++.+++.+.++ +. ..+.++|+..+. ...+.||+|+++..
T Consensus 214 ~g~--~VLDlg~GtG~~sl~~a~~ga~V~a--vDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 214 PGE--RVLDVYSYVGGFALRAARKGAYALA--VDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp TTC--EEEEESCTTTHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred CCC--eEEEcccchhHHHHHHHHcCCeEEE--EECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 355 8999999999999999999888777 78888888877653 33 346678866542 22344999998754
Q ss_pred ccccc------chhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 389 MDGWL------DMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 389 L~h~~------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
..... .......++..+.++|||||.+++.+.....
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~ 331 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL 331 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence 31110 0122457889999999999999987765543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.8e-08 Score=94.92 Aligned_cols=76 Identities=8% Similarity=0.097 Sum_probs=59.1
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCC-CccceEEec
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFD-NTMDLIHTT 386 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d-~sFDlVis~ 386 (467)
.+.++. +|||+|||+|.++..+++++..|++ +|+++.+++.++++ +.+.++++|+..+++++ ..| .|+++
T Consensus 27 ~~~~~~--~VLDiG~G~G~lt~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~n 101 (244)
T 1qam_A 27 RLNEHD--NIFEIGSGKGHFTLELVQRCNFVTA--IEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFGN 101 (244)
T ss_dssp CCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--ECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEEE
T ss_pred CCCCCC--EEEEEeCCchHHHHHHHHcCCeEEE--EECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEEe
Confidence 344454 8999999999999999999988998 77788898888765 34789999999988764 445 56666
Q ss_pred ccccccc
Q 012235 387 GFMDGWL 393 (467)
Q Consensus 387 ~~L~h~~ 393 (467)
... ++.
T Consensus 102 lPy-~~~ 107 (244)
T 1qam_A 102 IPY-NIS 107 (244)
T ss_dssp CCG-GGH
T ss_pred CCc-ccC
Confidence 554 443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=93.78 Aligned_cols=118 Identities=13% Similarity=0.047 Sum_probs=82.8
Q ss_pred ceEEEECCCccHHHHHHhhCC-------CEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceEEec
Q 012235 319 RIGLDFGVGTGTFAARMREQN-------VTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g-------~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
.+|||+|||+|.++..+++.. ..++| +|+++.+++.++.+ +. +.++++|.... ...+.||+|+++
T Consensus 132 ~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~G--iDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~N 208 (344)
T 2f8l_A 132 VSILDPACGTANLLTTVINQLELKGDVDVHASG--VDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD 208 (344)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEE--EESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CEEEeCCCCccHHHHHHHHHHHHhcCCCceEEE--EECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEEC
Confidence 389999999999999888763 56777 66777777766542 43 67888887653 346789999999
Q ss_pred cccccccchhh---------------HHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCc
Q 012235 387 GFMDGWLDMLL---------------LDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 387 ~~L~h~~~~~~---------------l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf 439 (467)
..+.++...+. ...++..+.+.|+|||++++..+.. .......+.+.+.+.|+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH 278 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe
Confidence 88744432210 1257999999999999999876433 22334466666666554
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-08 Score=101.53 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=77.3
Q ss_pred CCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc----CCCccce
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF----FDNTMDL 382 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf----~d~sFDl 382 (467)
++. +|||+|||+|.++..+++.|. .|++ +|+++.+++.+.++ + .+.++++|+..+.. .+++||+
T Consensus 217 ~~~--~VLDl~~G~G~~~~~la~~g~~~v~~--vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 292 (396)
T 2as0_A 217 PGD--RVLDVFTYTGGFAIHAAIAGADEVIG--IDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI 292 (396)
T ss_dssp TTC--EEEETTCTTTHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCC--eEEEecCCCCHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCE
Confidence 454 899999999999999999864 7888 67778887776542 3 36788888766532 2578999
Q ss_pred EEeccccccccc------hhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 383 IHTTGFMDGWLD------MLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 383 Vis~~~L~h~~~------~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
|++......... ......++.++.++|+|||.+++.+....
T Consensus 293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 999654311110 12346789999999999999998776543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.7e-08 Score=96.17 Aligned_cols=117 Identities=14% Similarity=0.196 Sum_probs=85.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
.++|. +|||+|||+|.++..++.+| ..|++ +|+++.+++.+.+ ++ .+.++.+|+..++. .+.||.|+
T Consensus 123 ~~~g~--~VlD~~aG~G~~~i~~a~~g~~~V~a--vD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi 197 (278)
T 3k6r_A 123 AKPDE--LVVDMFAGIGHLSLPIAVYGKAKVIA--IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL 197 (278)
T ss_dssp CCTTC--EEEETTCTTTTTTHHHHHHTCCEEEE--ECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred cCCCC--EEEEecCcCcHHHHHHHHhcCCeEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEE
Confidence 45676 99999999999999999886 57888 6777777776654 23 37788899888764 57899999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC----CCHHHHHHHHHHcCcee
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----KDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----~~~~~~~~~i~~~Gf~~ 441 (467)
++.... . ..++..+.++|||||.+.+..+.... +..+.+.+..+..|++.
T Consensus 198 ~~~p~~--~-----~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 198 MGYVVR--T-----HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp ECCCSS--G-----GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred ECCCCc--H-----HHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence 875431 1 25778888999999998775554322 22345666777788753
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=90.66 Aligned_cols=88 Identities=11% Similarity=-0.075 Sum_probs=69.0
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCccCCCccceEEeccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
++|||||||+|.++..+++.+.+|++ +|+++.+++.+++. ..+.++.+|+..+. ++||+|++...
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~v~~--veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~~ 148 (262)
T 2cmg_A 74 KEVLIVDGFDLELAHQLFKYDTHIDF--VQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQE 148 (262)
T ss_dssp CEEEEESSCCHHHHHHHTTSSCEEEE--ECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESSC
T ss_pred CEEEEEeCCcCHHHHHHHhCCCEEEE--EECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECCC
Confidence 48999999999999999887656777 77778887766532 23678888877654 78999998732
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
++ ..++.++.++|||||.+++..
T Consensus 149 -----dp---~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 149 -----PD---IHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CC---HHHHHHHHTTEEEEEEEEEEE
T ss_pred -----Ch---HHHHHHHHHhcCCCcEEEEEc
Confidence 23 248999999999999999864
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=9.6e-08 Score=95.27 Aligned_cols=84 Identities=6% Similarity=0.094 Sum_probs=67.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFDl 382 (467)
|.+.+.+.+++ +|||||||+|.++..|++++..|++ +|+++.+++.++++ +.+.++++|+..+++++.+||.
T Consensus 42 Iv~~l~~~~~~--~VLEIG~G~G~lT~~La~~~~~V~a--VEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~ 117 (295)
T 3gru_A 42 AVESANLTKDD--VVLEIGLGKGILTEELAKNAKKVYV--IEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNK 117 (295)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--EESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSE
T ss_pred HHHhcCCCCcC--EEEEECCCchHHHHHHHhcCCEEEE--EECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccE
Confidence 44455666666 8999999999999999999999999 55667777776553 4588999999999988889999
Q ss_pred EEeccccccccch
Q 012235 383 IHTTGFMDGWLDM 395 (467)
Q Consensus 383 Vis~~~L~h~~~~ 395 (467)
|+++... ++..+
T Consensus 118 Iv~NlPy-~is~p 129 (295)
T 3gru_A 118 VVANLPY-QISSP 129 (295)
T ss_dssp EEEECCG-GGHHH
T ss_pred EEEeCcc-cccHH
Confidence 9999776 55544
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.1e-08 Score=100.61 Aligned_cols=102 Identities=16% Similarity=0.041 Sum_probs=76.0
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCcc----CCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPF----FDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf----~d~sFDlVis~~~L 389 (467)
+|||+|||+|.++..+++.+..|++ +|+++.+++.+.++ +. +.++++|+..+.. .+++||+|++....
T Consensus 212 ~VLDlg~G~G~~~~~la~~~~~v~~--vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 212 RALDVFSYAGGFALHLALGFREVVA--VDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289 (382)
T ss_dssp EEEEETCTTTHHHHHHHHHEEEEEE--EESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred eEEEeeeccCHHHHHHHHhCCEEEE--EECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence 8999999999999999988667777 77788888777643 32 6788898766532 25789999986543
Q ss_pred cccc------chhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 390 DGWL------DMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 390 ~h~~------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
.... .......++.++.++|+|||.+++.+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 290 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1111 012346789999999999999999876543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-09 Score=103.82 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=74.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCC-Ccc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFD-NTM 380 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d-~sF 380 (467)
.+.+.+.+.++. +|||+|||+|.++..+++++..|++ +|+++.+++.+.++ ..+.++++|+..+++++ ++|
T Consensus 20 ~i~~~~~~~~~~--~VLDiG~G~G~~~~~l~~~~~~v~~--id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 20 QIIKQLNLKETD--TVYEIGTGKGHLTTKLAKISKQVTS--IELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHCCCCSSE--EEEECSCCCSSCSHHHHHHSSEEEE--SSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHhcCCCCCC--EEEEEeCCCCHHHHHHHHhCCeEEE--EECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 344555665565 8999999999999999999988998 66767676665543 23778899999988764 689
Q ss_pred ceEEeccccccccchhhHH----------HHH----HHHHhccCCCcEEEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLD----------FIL----FDWDRILRPGGLLWID 418 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~----------~~L----~el~RvLKPGG~LiI~ 418 (467)
.|+++... +..... +. ..+ +.+.|+|+|||.+.+.
T Consensus 96 -~vv~n~Py-~~~~~~-~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 96 -KIVGNIPY-HLSTQI-IKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp -EEEEECCS-SSCHHH-HHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred -EEEEeCCc-cccHHH-HHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 77776443 221110 11 233 6689999999987663
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.6e-08 Score=100.00 Aligned_cols=122 Identities=12% Similarity=-0.115 Sum_probs=83.6
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCCcc----CCCcc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRLPF----FDNTM 380 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~Lpf----~d~sF 380 (467)
.++. +|||+|||+|.++..+++.| ..|++ +|+++.+++.+.++ + .+.++++|+..+.. .+++|
T Consensus 219 ~~~~--~VLDl~cG~G~~sl~la~~g~~~V~~--vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 219 VENK--RVLNCFSYTGGFAVSALMGGCSQVVS--VDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp CTTC--EEEEESCTTCSHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCC--eEEEeeccCCHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCC
Confidence 4454 89999999999999999986 47888 77778887777542 3 35688888766532 15689
Q ss_pred ceEEeccccccc------cchhhHHHHHHHHHhccCCCcEEEEEecccCCC--CHH-HHHHHHHHcCc
Q 012235 381 DLIHTTGFMDGW------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--DLD-DYMYMFLQFRY 439 (467)
Q Consensus 381 DlVis~~~L~h~------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--~~~-~~~~~i~~~Gf 439 (467)
|+|++....... ........++.++.++|+|||.+++++....-. ... .+.+.+...|+
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~ 362 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 999997543111 001235688999999999999999976544322 112 33335556663
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.6e-08 Score=107.04 Aligned_cols=121 Identities=15% Similarity=0.062 Sum_probs=86.1
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHHc----C----CccEEEccCCC-CccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIALR----G----LIPLYVTLNQR-LPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~-Lpf~d~sFDl 382 (467)
..++. +|||+|||+|.++..++..|.. |++ +|+|+.+++.+.++ + .+.++++|+.. ++...++||+
T Consensus 537 ~~~g~--~VLDlg~GtG~~sl~aa~~ga~~V~a--VD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~ 612 (703)
T 3v97_A 537 MSKGK--DFLNLFSYTGSATVHAGLGGARSTTT--VDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDL 612 (703)
T ss_dssp HCTTC--EEEEESCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEE
T ss_pred hcCCC--cEEEeeechhHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccE
Confidence 34555 8999999999999999988764 888 77888888887653 2 36788998776 4455689999
Q ss_pred EEeccccc--------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 383 IHTTGFMD--------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 383 Vis~~~L~--------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
|++..... .+........++.++.++|+|||.|+++.-...-.. -.+.+.+.|++
T Consensus 613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~---~~~~l~~~g~~ 675 (703)
T 3v97_A 613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRM---DLDGLAKLGLK 675 (703)
T ss_dssp EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCC---CHHHHHHTTEE
T ss_pred EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc---CHHHHHHcCCc
Confidence 99965321 111123356789999999999999998764422111 13456677765
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=97.46 Aligned_cols=125 Identities=15% Similarity=0.062 Sum_probs=83.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceE
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
+.+.+...++. +|||+|||+|.++..++++ +..++|+|+| +.+++.+ ..+.++++|....+. ++.||+|
T Consensus 31 ~~~~~~~~~~~--~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~--~~~~~~a---~~~~~~~~D~~~~~~-~~~fD~I 102 (421)
T 2ih2_A 31 MVSLAEAPRGG--RVLEPACAHGPFLRAFREAHGTAYRFVGVEID--PKALDLP---PWAEGILADFLLWEP-GEAFDLI 102 (421)
T ss_dssp HHHHCCCCTTC--EEEEETCTTCHHHHHHHHHHCSCSEEEEEESC--TTTCCCC---TTEEEEESCGGGCCC-SSCEEEE
T ss_pred HHHhhccCCCC--EEEECCCCChHHHHHHHHHhCCCCeEEEEECC--HHHHHhC---CCCcEEeCChhhcCc-cCCCCEE
Confidence 33444433343 8999999999999999974 5789996655 4444333 347788998877653 5789999
Q ss_pred Eeccccccccc---------hh-----------------hHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHH
Q 012235 384 HTTGFMDGWLD---------ML-----------------LLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFL 435 (467)
Q Consensus 384 is~~~L~h~~~---------~~-----------------~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~ 435 (467)
+++-....... .. ....++..+.++|+|||.+++..+.. .....+.+.+.+.
T Consensus 103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~ 182 (421)
T 2ih2_A 103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLA 182 (421)
T ss_dssp EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHH
T ss_pred EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHH
Confidence 99754421111 11 11256889999999999999876543 2223346777777
Q ss_pred HcCc
Q 012235 436 QFRY 439 (467)
Q Consensus 436 ~~Gf 439 (467)
+.|+
T Consensus 183 ~~~~ 186 (421)
T 2ih2_A 183 REGK 186 (421)
T ss_dssp HHSE
T ss_pred hcCC
Confidence 7666
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.5e-07 Score=88.17 Aligned_cols=132 Identities=12% Similarity=-0.014 Sum_probs=85.3
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceE
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlV 383 (467)
.++...+ ..+|||||||+|.++..+. .+..+++ .|+++.+++.+... +. ..+.+.|....+. +++||+|
T Consensus 99 ~i~~~~~--p~~VLDlGCG~gpLal~~~-~~~~y~a--~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~-~~~~Dvv 172 (253)
T 3frh_A 99 FIFSAET--PRRVLDIACGLNPLALYER-GIASVWG--CDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP-AEAGDLA 172 (253)
T ss_dssp HHTSSCC--CSEEEEETCTTTHHHHHHT-TCSEEEE--EESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC-CCBCSEE
T ss_pred HHhcCCC--CCeEEEecCCccHHHHHhc-cCCeEEE--EeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC-CCCcchH
Confidence 4455522 3489999999999999888 6678888 66667888777643 32 5677888777665 4589999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe---cccCCCCHH-HHHHHHHHcCceeeEEEEccC
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR---FFCNKKDLD-DYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~---~~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k 449 (467)
++.-+++|..+.. .....++.+.|+++|.++-.. .......++ .|.+.+++. ...-.|.+...
T Consensus 173 Lllk~lh~LE~q~--~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~-~~~~~~~~~~~ 239 (253)
T 3frh_A 173 LIFKLLPLLEREQ--AGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGG-LPAEFEIEDKK 239 (253)
T ss_dssp EEESCHHHHHHHS--TTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHH-SCTTEEEEEEE
T ss_pred HHHHHHHHhhhhc--hhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHH-hhccchhhhhe
Confidence 9998885544332 234448888999998766543 111222222 566666654 34445655544
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=98.82 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=72.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFD 381 (467)
+..++.+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ +. +.++.+|+..+.. .+||
T Consensus 282 ~~~~~~~~~~~--~VLDlgcG~G~~sl~la~~~~~V~g--vD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD 355 (425)
T 2jjq_A 282 VRKVSELVEGE--KILDMYSGVGTFGIYLAKRGFNVKG--FDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFD 355 (425)
T ss_dssp HHHHHHHCCSS--EEEEETCTTTHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCS
T ss_pred HHHhhccCCCC--EEEEeeccchHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCC
Confidence 33333344454 8999999999999999999889999 77788888877543 33 7888999888753 2899
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+|+++....... +.++..+ +.|+|||.++++
T Consensus 356 ~Vv~dPPr~g~~-----~~~~~~l-~~l~p~givyvs 386 (425)
T 2jjq_A 356 TVIVDPPRAGLH-----PRLVKRL-NREKPGVIVYVS 386 (425)
T ss_dssp EEEECCCTTCSC-----HHHHHHH-HHHCCSEEEEEE
T ss_pred EEEEcCCccchH-----HHHHHHH-HhcCCCcEEEEE
Confidence 999976542111 2345555 459999999884
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-07 Score=92.94 Aligned_cols=142 Identities=15% Similarity=0.054 Sum_probs=87.4
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHH---cC-CccEEEccCCCCccCCCccceEEe
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NV-TIVSTALNLGAPFNEMIAL---RG-LIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~---rg-~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.++++. +|||+|||+|.|+..++++ ++ .|.++ |++..+...+.. .+ .+.....++....+.++.+|+|+|
T Consensus 87 ~Lk~~~--~VLDLGaAPGGWsQvAa~~~gv~sV~Gv--dvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLS 162 (282)
T 3gcz_A 87 YVKPTG--IVVDLGCGRGGWSYYAASLKNVKKVMAF--TLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLC 162 (282)
T ss_dssp SCCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEE--CCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEE
T ss_pred CCCCCC--EEEEeCCCCCHHHHHHHHhcCCCeeeeE--EeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEe
Confidence 456665 8999999999999988865 43 36664 443321111100 01 122233333333456789999999
Q ss_pred ccccc---cccchhhHHHHHHHHHhccCCC--cEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc--cCCCCceEEEE
Q 012235 386 TGFMD---GWLDMLLLDFILFDWDRILRPG--GLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS--PKSKDEVYLSA 458 (467)
Q Consensus 386 ~~~L~---h~~~~~~l~~~L~el~RvLKPG--G~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~--~k~~devyl~a 458 (467)
..+.. ++.+....-.++.-+.++|+|| |.|++-.|-.-..+...+.+.+++. |..+.+... .....|+|+.+
T Consensus 163 DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~-F~~V~~~KPaSR~~S~E~Y~V~ 241 (282)
T 3gcz_A 163 DIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLK-HGGGLVRVPLSRNSTHEMYWVS 241 (282)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHH-HCCEEECCTTSCTTCCCEEEET
T ss_pred cCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHh-cCCEEEEcCCCcccCcceeEEE
Confidence 88873 1223322223566678999999 9999977654345555777777777 777766544 12455788865
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.43 E-value=6.9e-07 Score=87.12 Aligned_cols=78 Identities=9% Similarity=0.166 Sum_probs=62.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCC----C
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFD----N 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d----~ 378 (467)
|.+.+.+.++. +|||||||+|.++..|++++..|++ +|+++.+++.+.++ +.+.++++|+..+++++ +
T Consensus 21 iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~a--vEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 96 (255)
T 3tqs_A 21 IVSAIHPQKTD--TLVEIGPGRGALTDYLLTECDNLAL--VEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDK 96 (255)
T ss_dssp HHHHHCCCTTC--EEEEECCTTTTTHHHHTTTSSEEEE--EECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSS
T ss_pred HHHhcCCCCcC--EEEEEcccccHHHHHHHHhCCEEEE--EECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCC
Confidence 44556666666 8999999999999999999989999 66778888888764 35889999999987643 5
Q ss_pred ccceEEecccc
Q 012235 379 TMDLIHTTGFM 389 (467)
Q Consensus 379 sFDlVis~~~L 389 (467)
.|| |+++...
T Consensus 97 ~~~-vv~NlPY 106 (255)
T 3tqs_A 97 PLR-VVGNLPY 106 (255)
T ss_dssp CEE-EEEECCH
T ss_pred CeE-EEecCCc
Confidence 688 7777665
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.8e-07 Score=87.09 Aligned_cols=97 Identities=9% Similarity=-0.033 Sum_probs=70.9
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceEEeccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
..+|||||||+|.++..++.. ..++++ +|+++.+++.+..+ |. ..+.+.|...-+ +.+.||+|++.-+++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a--~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIA--SDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLP 209 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEE--EESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEE--EeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHH
Confidence 348999999999999998876 457777 66668888777643 33 456666654433 578899999999995
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|..+.. ....+ ++.+.|+|+|.++-..
T Consensus 210 ~Le~q~-kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 210 CLETQQ-RGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp HHHHHS-TTHHH-HHHHHSSCSEEEEEEE
T ss_pred Hhhhhh-hHHHH-HHHHHhCCCCEEEecc
Confidence 554442 23444 9999999999876643
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=85.72 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=64.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc---CCccEEEccCCCCccCCC-ccce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR---GLIPLYVTLNQRLPFFDN-TMDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r---g~i~~~~~d~~~Lpf~d~-sFDl 382 (467)
|.+.+.+.++ +|||||||+|.++..|++++..|++ +|+++.+++.+.++ ..+.++++|+..+++++. .+|.
T Consensus 39 Iv~~~~~~~~---~VLEIG~G~G~lt~~L~~~~~~V~a--vEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 39 IVEAARPFTG---PVFEVGPGLGALTRALLEAGAEVTA--IEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp HHHHHCCCCS---CEEEECCTTSHHHHHHHHTTCCEEE--EESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEE
T ss_pred HHHhcCCCCC---eEEEEeCchHHHHHHHHHcCCEEEE--EECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccE
Confidence 3444555544 7999999999999999999989999 56667888888765 348899999998887653 7899
Q ss_pred EEeccccccccch
Q 012235 383 IHTTGFMDGWLDM 395 (467)
Q Consensus 383 Vis~~~L~h~~~~ 395 (467)
|+++... +...+
T Consensus 114 iv~NlPy-~iss~ 125 (271)
T 3fut_A 114 LVANLPY-HIATP 125 (271)
T ss_dssp EEEEECS-SCCHH
T ss_pred EEecCcc-cccHH
Confidence 9999876 55444
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=90.12 Aligned_cols=109 Identities=11% Similarity=0.064 Sum_probs=76.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC----------------------------------------CEEEEEe
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN----------------------------------------VTIVSTA 346 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g----------------------------------------~~V~gvd 346 (467)
+..+....++. .|||.+||+|+++..++..+ ..|+|
T Consensus 193 ll~l~~~~~~~--~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G-- 268 (393)
T 3k0b_A 193 LVLLTSWHPDR--PFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG-- 268 (393)
T ss_dssp HHHHSCCCTTS--CEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE--
T ss_pred HHHHhCCCCCC--eEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE--
Confidence 33444555555 89999999999988777542 34777
Q ss_pred cCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc-cccchhhHHHHHHHHHhccCC--CcEEE
Q 012235 347 LNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD-GWLDMLLLDFILFDWDRILRP--GGLLW 416 (467)
Q Consensus 347 iDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~-h~~~~~~l~~~L~el~RvLKP--GG~Li 416 (467)
+|+++.|++.++.+ + .+.+.++|+..++.+ .+||+|+++.... ...+...+..+..++.++||+ ||.++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 67778888877643 3 378999999988764 5899999996542 223333455667777777776 99888
Q ss_pred EEec
Q 012235 417 IDRF 420 (467)
Q Consensus 417 I~~~ 420 (467)
+.+.
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8653
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.32 E-value=9.7e-07 Score=92.26 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=77.2
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---------------CCEEEEEecCCCHHHHHHHHH----cC----C
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---------------NVTIVSTALNLGAPFNEMIAL----RG----L 362 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---------------g~~V~gvdiDiS~~~l~~a~~----rg----~ 362 (467)
.+.+++...++. +|||.|||+|.++..+++. +..++| +|+++.+.+.++. .+ .
T Consensus 162 ~mv~~l~~~~~~--~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G--~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 162 AMVDCINPQMGE--TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHG--VDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHCCCTTC--CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEE--EESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHhCCCCCC--EEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEE--EeCCHHHHHHHHHHHHHhCCCcCC
Confidence 344555555554 8999999999999888763 356888 5556666666643 23 3
Q ss_pred ccEEEccCCCCccCCCccceEEeccccccccchh--------------hHHHHHHHHHhccCCCcEEEEEec
Q 012235 363 IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML--------------LLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 363 i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~--------------~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+.+.++|....+.. ..||+|+++..+.+..... ....++..+.++|||||++++..+
T Consensus 238 ~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 238 SPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 57889998776653 4899999997764322110 013689999999999999988764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-06 Score=87.36 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=78.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC----------------------------------------CEEEEEe
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN----------------------------------------VTIVSTA 346 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g----------------------------------------~~V~gvd 346 (467)
+..+....++. .+||.+||+|+++...+..+ ..++|
T Consensus 186 ll~l~~~~~~~--~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G-- 261 (384)
T 3ldg_A 186 IILLSNWFPDK--PFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG-- 261 (384)
T ss_dssp HHHHTTCCTTS--CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE--
T ss_pred HHHHhCCCCCC--eEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE--
Confidence 33444555555 89999999999988777542 34788
Q ss_pred cCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc-cccchhhHHHHHHHHHhccCC--CcEEE
Q 012235 347 LNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD-GWLDMLLLDFILFDWDRILRP--GGLLW 416 (467)
Q Consensus 347 iDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~-h~~~~~~l~~~L~el~RvLKP--GG~Li 416 (467)
+|+++.|++.++++ + .+.+.++|+..++.+ .+||+|+++-... ...+...+..+..++.++||+ ||.++
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 66778888877643 3 378999999988764 5899999996652 233344466777778888877 99988
Q ss_pred EEec
Q 012235 417 IDRF 420 (467)
Q Consensus 417 I~~~ 420 (467)
+.+.
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8664
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=9.3e-07 Score=90.19 Aligned_cols=90 Identities=7% Similarity=0.039 Sum_probs=66.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc--cCC--------------
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP--FFD-------------- 377 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp--f~d-------------- 377 (467)
+|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++.+|+..+. +..
T Consensus 216 ~vLDl~cG~G~~~l~la~~~~~V~g--vd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 216 DLLELYCGNGNFSLALARNFDRVLA--TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp EEEEESCTTSHHHHHHGGGSSEEEE--ECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred EEEEccCCCCHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 7999999999999999988788998 77888888777542 3 3778888876542 221
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
.+||+|+....-. .+..++.+.|+++|.+++.+.
T Consensus 294 ~~fD~Vv~dPPr~---------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 294 YQCETIFVDPPRS---------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCEEEEEECCCTT---------CCCHHHHHHHTTSSEEEEEES
T ss_pred CCCCEEEECcCcc---------ccHHHHHHHHhCCCEEEEEEC
Confidence 3799999765431 234456677789998888654
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-06 Score=88.87 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=77.0
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCC----------------------------------------CEEEEEecCC
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQN----------------------------------------VTIVSTALNL 349 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g----------------------------------------~~V~gvdiDi 349 (467)
+....++. .|||.|||+|+++..++..+ ..|+| +|+
T Consensus 190 ~~~~~~~~--~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G--vDi 265 (385)
T 3ldu_A 190 LTPWKAGR--VLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG--YDI 265 (385)
T ss_dssp TSCCCTTS--CEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE--EES
T ss_pred hhCCCCCC--eEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE--EEC
Confidence 33444554 89999999999998887652 45788 667
Q ss_pred CHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc-cccchhhHHHHHHHHHhccCC--CcEEEEEe
Q 012235 350 GAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD-GWLDMLLLDFILFDWDRILRP--GGLLWIDR 419 (467)
Q Consensus 350 S~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~-h~~~~~~l~~~L~el~RvLKP--GG~LiI~~ 419 (467)
++.+++.++.+ + .+.+.++|+.+++. +.+||+|+++.... .+.+...+..+..++.++||+ ||.+++.+
T Consensus 266 d~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 266 DEESIDIARENAEIAGVDEYIEFNVGDATQFKS-EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp CHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 78888777643 4 37889999988876 45899999987762 233334456777788888877 88888865
Q ss_pred c
Q 012235 420 F 420 (467)
Q Consensus 420 ~ 420 (467)
.
T Consensus 345 ~ 345 (385)
T 3ldu_A 345 S 345 (385)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.25 E-value=8.1e-06 Score=81.69 Aligned_cols=128 Identities=14% Similarity=-0.026 Sum_probs=84.0
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPF 375 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf 375 (467)
..+..++...++. +|||+|||+|..+..+++. ...|++ +|+++.+++.+.++ + .+.++++|+..++.
T Consensus 92 ~l~~~~l~~~~g~--~VLDlcaG~G~kt~~la~~~~~~g~V~a--~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~ 167 (309)
T 2b9e_A 92 CLPAMLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFA--FDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP 167 (309)
T ss_dssp GHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred HHHHHHhCCCCCC--EEEEeCCChhHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCc
Confidence 3455667777887 9999999999999999875 367888 66677777766543 4 37788888877754
Q ss_pred CC---CccceEEecc------cccc-----c----cc-h-h----hHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHH
Q 012235 376 FD---NTMDLIHTTG------FMDG-----W----LD-M-L----LLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDY 430 (467)
Q Consensus 376 ~d---~sFDlVis~~------~L~h-----~----~~-~-~----~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~ 430 (467)
.. ++||.|++.. ++.. | .. + . ....++..+.++|+ ||.++.++.....++ .+.+
T Consensus 168 ~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v 246 (309)
T 2b9e_A 168 SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVV 246 (309)
T ss_dssp TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHH
T ss_pred cccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHH
Confidence 32 5799999731 1211 1 10 0 0 01346777888887 999998876654433 3355
Q ss_pred HHHHHHc
Q 012235 431 MYMFLQF 437 (467)
Q Consensus 431 ~~~i~~~ 437 (467)
...+++.
T Consensus 247 ~~~l~~~ 253 (309)
T 2b9e_A 247 RDALQQN 253 (309)
T ss_dssp HHHHTTS
T ss_pred HHHHHhC
Confidence 5566554
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=4.8e-06 Score=82.74 Aligned_cols=141 Identities=13% Similarity=0.085 Sum_probs=84.6
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-CC-EEEEEecCCCHHHHHHH---HHcC-CccEEEccCCCCccCCCccceEEec
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-NV-TIVSTALNLGAPFNEMI---ALRG-LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a---~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
+.++. +|||+||++|.|+..++++ ++ .|.++++ +..+.... ...+ .+........-..+.++.+|+|+|.
T Consensus 79 ~~~g~--~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl--g~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD 154 (300)
T 3eld_A 79 LRITG--RVLDLGCGRGGWSYYAAAQKEVMSVKGYTL--GIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCD 154 (300)
T ss_dssp CCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEECC--CCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCCC--EEEEcCCCCCHHHHHHHHhcCCceeeeEEe--ccccccccccccccCCceEEeecCceeeecCCCCcCEEeec
Confidence 34444 8999999999999999986 43 4666444 32110000 0001 1112222222233456789999998
Q ss_pred cccc---cccchhhHHHHHHHHHhccCCC-cEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc--cCCCCceEEEE
Q 012235 387 GFMD---GWLDMLLLDFILFDWDRILRPG-GLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS--PKSKDEVYLSA 458 (467)
Q Consensus 387 ~~L~---h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~--~k~~devyl~a 458 (467)
.+.. +..+......++.-+.++|+|| |.|++-.|-.-..+...+...+++. |..+..... .....|+|+.+
T Consensus 155 ~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~-F~~V~~~KPaSR~~S~E~Y~V~ 231 (300)
T 3eld_A 155 IGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLR-FGGGIVRVPFSRNSTHEMYYIS 231 (300)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHH-HCCEEECCTTSCTTCCCEEEES
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHh-CCcEEEEeCCCCCCChHHeeec
Confidence 8774 1122211123466678999999 9999976654455555777777777 777766544 22456788864
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.8e-05 Score=79.75 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=88.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+++|. +|||+||++|.++..++++|..|+++| .+ +|...+...+.+.++.+|+..+....+.||+|+|..+..
T Consensus 209 l~~G~--~vlDLGAaPGGWT~~l~~rg~~V~aVD--~~-~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~-- 281 (375)
T 4auk_A 209 LANGM--WAVDLGACPGGWTYQLVKRNMWVYSVD--NG-PMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK-- 281 (375)
T ss_dssp SCTTC--EEEEETCTTCHHHHHHHHTTCEEEEEC--SS-CCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC--
T ss_pred CCCCC--EEEEeCcCCCHHHHHHHHCCCEEEEEE--hh-hcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC--
Confidence 45676 999999999999999999999999955 33 344445555678899999888887778999999998872
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCCCC-------HHHHHHHHHHcCcee-eEEEEccCCCCceEEEEEeecCC
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKD-------LDDYMYMFLQFRYKK-HKWAISPKSKDEVYLSALLEKPP 464 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-------~~~~~~~i~~~Gf~~-l~W~~~~k~~devyl~avlqKP~ 464 (467)
+......+..+..-+..++.++..-+.- +.. .+.+.+.+...|+.. ++......+++|+ +..++||.
T Consensus 282 --p~~~~~l~~~wl~~~~~~~aI~~lKL~m-k~~~~~l~~~~~~i~~~l~~~g~~~~l~akhL~hdReEi--TV~~rk~~ 356 (375)
T 4auk_A 282 --PAKVAALMAQWLVNGWCRETIFNLKLPM-KKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEV--TVHVRRIW 356 (375)
T ss_dssp --HHHHHHHHHHHHHTTSCSEEEEEEECCS-SSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCSSEE--EEEEEECC
T ss_pred --hHHhHHHHHHHHhccccceEEEEEEecc-cchHHHHHHHHHHHHHHHHhcCcchhheehhhccCCcEE--EEEEEech
Confidence 2112234444444444445544333322 111 123444556666643 2222222245555 44678874
Q ss_pred C
Q 012235 465 R 465 (467)
Q Consensus 465 ~ 465 (467)
.
T Consensus 357 a 357 (375)
T 4auk_A 357 A 357 (375)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.7e-06 Score=79.71 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=60.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc--CCccEEEccCCCCccCCCc-cce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR--GLIPLYVTLNQRLPFFDNT-MDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r--g~i~~~~~d~~~Lpf~d~s-FDl 382 (467)
|.+.+.+.++. +|||||||+|.++..+++++ ..|++ +|+++.+++.+.++ ..+.++++|+..+++++.. ...
T Consensus 23 iv~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~~~v~a--vEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~ 98 (249)
T 3ftd_A 23 IAEELNIEEGN--TVVEVGGGTGNLTKVLLQHPLKKLYV--IELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELK 98 (249)
T ss_dssp HHHHTTCCTTC--EEEEEESCHHHHHHHHTTSCCSEEEE--ECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEE
T ss_pred HHHhcCCCCcC--EEEEEcCchHHHHHHHHHcCCCeEEE--EECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcE
Confidence 34445555565 89999999999999999995 88988 77788899888766 2368999999998876421 225
Q ss_pred EEecccccccc
Q 012235 383 IHTTGFMDGWL 393 (467)
Q Consensus 383 Vis~~~L~h~~ 393 (467)
|+++... +..
T Consensus 99 vv~NlPy-~i~ 108 (249)
T 3ftd_A 99 VVGNLPY-NVA 108 (249)
T ss_dssp EEEECCT-TTH
T ss_pred EEEECch-hcc
Confidence 6666554 443
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.7e-06 Score=83.07 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=61.0
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCE----EEEEecCCCHHHHHHHHHc--CCccEEEccCCCCccCCC--
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVT----IVSTALNLGAPFNEMIALR--GLIPLYVTLNQRLPFFDN-- 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~----V~gvdiDiS~~~l~~a~~r--g~i~~~~~d~~~Lpf~d~-- 378 (467)
|.+.+.+.++. +|||||||+|.++..|++++.. |++ +|+++.+++.+.++ ..+.++++|+..+++++-
T Consensus 34 iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~~~~~V~a--vDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 34 IVAAIRPERGE--RMVEIGPGLGALTGPVIARLATPGSPLHA--VELDRDLIGRLEQRFGELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp HHHHHCCCTTC--EEEEECCTTSTTHHHHHHHHCBTTBCEEE--EECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSC
T ss_pred HHHhcCCCCcC--EEEEEccccHHHHHHHHHhCCCcCCeEEE--EECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcc
Confidence 44555666666 8999999999999999998776 888 66778898888765 458899999998886532
Q ss_pred ----ccceEEecccc
Q 012235 379 ----TMDLIHTTGFM 389 (467)
Q Consensus 379 ----sFDlVis~~~L 389 (467)
..+.|+++...
T Consensus 110 ~~~~~~~~vv~NlPY 124 (279)
T 3uzu_A 110 PGDEPSLRIIGNLPY 124 (279)
T ss_dssp SSSSCCEEEEEECCH
T ss_pred cccCCceEEEEccCc
Confidence 23467777655
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.4e-06 Score=82.22 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=59.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCH-------HHHHHHHHc-------CCccEEEccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGA-------PFNEMIALR-------GLIPLYVTLNQR 372 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~-------~~l~~a~~r-------g~i~~~~~d~~~ 372 (467)
+...+...++. +|||+|||+|.++..+++.+..|++ +|+++ .+++.+.++ +.+.++++|+..
T Consensus 75 l~~a~~~~~~~--~VLDlgcG~G~~a~~lA~~g~~V~~--vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~ 150 (258)
T 2r6z_A 75 IAKAVNHTAHP--TVWDATAGLGRDSFVLASLGLTVTA--FEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAE 150 (258)
T ss_dssp HHHHTTGGGCC--CEEETTCTTCHHHHHHHHTTCCEEE--EECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHH
T ss_pred HHHHhCcCCcC--eEEEeeCccCHHHHHHHHhCCEEEE--EECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHH
Confidence 34444444444 8999999999999999999989998 66777 777766542 237899999876
Q ss_pred C-c-cCC--CccceEEeccccc
Q 012235 373 L-P-FFD--NTMDLIHTTGFMD 390 (467)
Q Consensus 373 L-p-f~d--~sFDlVis~~~L~ 390 (467)
+ + +++ ++||+|+++..+.
T Consensus 151 ~l~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 151 QMPALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHHHCCCSEEEECCCC-
T ss_pred HHHhhhccCCCccEEEECCCCC
Confidence 4 3 444 7899999987653
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.5e-05 Score=80.55 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=65.2
Q ss_pred ceEEEECCCccHHHHHHhhC-----------------CCEEEEEecCCC-----------HHHHHHHHH-cCC---ccEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ-----------------NVTIVSTALNLG-----------APFNEMIAL-RGL---IPLY 366 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-----------------g~~V~gvdiDiS-----------~~~l~~a~~-rg~---i~~~ 366 (467)
-+|+|+||++|..+..+... ...+..+--|+. +.+.+.+.+ .+. .-++
T Consensus 54 ~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~ 133 (384)
T 2efj_A 54 FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLI 133 (384)
T ss_dssp EEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEE
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEE
Confidence 37999999999888776543 122333224443 222222222 221 2344
Q ss_pred Ecc---CCCCccCCCccceEEeccccccccchh--h-----------------------------------HHHHHHHHH
Q 012235 367 VTL---NQRLPFFDNTMDLIHTTGFMDGWLDML--L-----------------------------------LDFILFDWD 406 (467)
Q Consensus 367 ~~d---~~~Lpf~d~sFDlVis~~~L~h~~~~~--~-----------------------------------l~~~L~el~ 406 (467)
.+. ...-.|++++||+|+|+.+| ||.... . +..+|.-..
T Consensus 134 ~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 134 GAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 33446889999999999999 996431 1 112256668
Q ss_pred hccCCCcEEEEEecccCC
Q 012235 407 RILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 407 RvLKPGG~LiI~~~~~~~ 424 (467)
+.|+|||.+++.......
T Consensus 213 ~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 213 EELISRGRMLLTFICKED 230 (384)
T ss_dssp HHEEEEEEEEEEEECCCT
T ss_pred HHhccCCeEEEEEecCCC
Confidence 999999999998765433
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=7.8e-06 Score=79.78 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=79.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-CC-EEEEE--ecCCCHHHHHHHHH-cC--CccEEEc-cCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-NV-TIVST--ALNLGAPFNEMIAL-RG--LIPLYVT-LNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g~-~V~gv--diDiS~~~l~~a~~-rg--~i~~~~~-d~~~Lpf~d~sFDlVi 384 (467)
++++. +|||+||+.|.++...+++ ++ .|.|. ++|. +....... .| .+.+.++ |+..++ +..+|+|+
T Consensus 71 ikpg~--~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVL 144 (269)
T 2px2_A 71 VQPIG--KVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--HEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLL 144 (269)
T ss_dssp CCCCE--EEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--SCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEE
T ss_pred CCCCC--EEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--ccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEE
Confidence 56676 9999999999999999987 33 33443 2331 00000000 12 1234446 776643 56899999
Q ss_pred ecccccc---ccchhhHHHHHHHHHhccCCCc-EEEEEecccCCCCHHHHHHHHHHcCceeeEEE--EccCCCCceEEEE
Q 012235 385 TTGFMDG---WLDMLLLDFILFDWDRILRPGG-LLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA--ISPKSKDEVYLSA 458 (467)
Q Consensus 385 s~~~L~h---~~~~~~l~~~L~el~RvLKPGG-~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~--~~~k~~devyl~a 458 (467)
|..+... ..+....-.++.-+.++|+||| .|++-.|....++..++.+.+++. |..++-. ...+...|+|+.+
T Consensus 145 SDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~-F~~vkvk~paSR~~S~E~YlVa 223 (269)
T 2px2_A 145 CDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRR-FGGGLVRVPLSRNSNHEMYWVS 223 (269)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH-HCCEEECCTTSCTTCCCEEEET
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHH-cCCEEEECCCCCCCCccEEEEe
Confidence 9876631 1111111125666669999999 988877663223333555566655 6666521 1112456788864
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.5e-05 Score=78.82 Aligned_cols=105 Identities=16% Similarity=0.039 Sum_probs=67.7
Q ss_pred ceEEEECCCccHHHHHHhhC----------------CCEEEEEecCCCHHHHHHHHHc-C------CccEEEc---cCCC
Q 012235 319 RIGLDFGVGTGTFAARMREQ----------------NVTIVSTALNLGAPFNEMIALR-G------LIPLYVT---LNQR 372 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~----------------g~~V~gvdiDiS~~~l~~a~~r-g------~i~~~~~---d~~~ 372 (467)
-+|+|+||++|..+..+.+. ...+..+--|+..+.-..+.+. . ..-++.+ ....
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~ 132 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence 36899999999776655433 1233333355544444433322 1 1123333 4444
Q ss_pred CccCCCccceEEeccccccccch-------------------------------hhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 373 LPFFDNTMDLIHTTGFMDGWLDM-------------------------------LLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 373 Lpf~d~sFDlVis~~~L~h~~~~-------------------------------~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
-.|+++++|+|+|+.++ ||... .++..+|....+.|+|||.+++....
T Consensus 133 rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~g 211 (359)
T 1m6e_X 133 RLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp CCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred ccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 56889999999999999 99643 12334588889999999999997765
Q ss_pred cCC
Q 012235 422 CNK 424 (467)
Q Consensus 422 ~~~ 424 (467)
...
T Consensus 212 r~~ 214 (359)
T 1m6e_X 212 RRS 214 (359)
T ss_dssp CSS
T ss_pred CCC
Confidence 533
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.8e-05 Score=81.46 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=41.6
Q ss_pred CCCCccCCCccceEEeccccccccch------------------------------------hhHHHHHHHHHhccCCCc
Q 012235 370 NQRLPFFDNTMDLIHTTGFMDGWLDM------------------------------------LLLDFILFDWDRILRPGG 413 (467)
Q Consensus 370 ~~~Lpf~d~sFDlVis~~~L~h~~~~------------------------------------~~l~~~L~el~RvLKPGG 413 (467)
...-.|++++||+|+|+.+| ||... .++..+|+..+|.|+|||
T Consensus 141 Fy~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG 219 (374)
T 3b5i_A 141 FYRRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGG 219 (374)
T ss_dssp TTSCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred hhcccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33345789999999999999 99751 134567889999999999
Q ss_pred EEEEEecccC
Q 012235 414 LLWIDRFFCN 423 (467)
Q Consensus 414 ~LiI~~~~~~ 423 (467)
.+++......
T Consensus 220 ~mvl~~~gr~ 229 (374)
T 3b5i_A 220 AMFLVCLGRT 229 (374)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEecCC
Confidence 9999876553
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=78.40 Aligned_cols=103 Identities=10% Similarity=-0.049 Sum_probs=66.3
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHH-------HHHHHHc--------CCccEEEcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPF-------NEMIALR--------GLIPLYVTL 369 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~-------l~~a~~r--------g~i~~~~~d 369 (467)
..+.+.+.+.++...+|||+|||+|..+..++.+|..|++ +|.++.+ ++.+..+ ..+.++++|
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~--vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRM--LERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEE--EECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 3455666666661128999999999999999999889999 5555643 3332211 237788998
Q ss_pred CCC-CccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCc
Q 012235 370 NQR-LPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGG 413 (467)
Q Consensus 370 ~~~-Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG 413 (467)
... ++....+||+|++...+ +.... ..++.+..++|++.|
T Consensus 154 ~~~~L~~~~~~fDvV~lDP~y-~~~~~---saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYLDPMF-PHKQK---SALVKKEMRVFQSLV 194 (258)
T ss_dssp HHHHSTTCSSCCSEEEECCCC-CCCCC--------HHHHHHHHHS
T ss_pred HHHHHHhCcccCCEEEEcCCC-CCccc---chHHHHHHHHHHHhh
Confidence 765 34333479999998777 33332 245666777777755
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=9.6e-06 Score=80.99 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=61.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCcc--CC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPF--FD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf--~d 377 (467)
+.+.+.+.++. +|||+|||+|.++..++++ +..|++ +|.++.|++.+.++ ..+.++++|+..++. ..
T Consensus 18 ~l~~L~~~~g~--~vLD~g~G~G~~s~~la~~~~~~~Vig--vD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 18 VIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIG--IDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 44566676766 8999999999999999987 478888 77788999888754 347899999888752 21
Q ss_pred ---CccceEEecccc
Q 012235 378 ---NTMDLIHTTGFM 389 (467)
Q Consensus 378 ---~sFDlVis~~~L 389 (467)
++||.|++....
T Consensus 94 ~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 94 LGIEKVDGILMDLGV 108 (301)
T ss_dssp TTCSCEEEEEEECSC
T ss_pred cCCCCCCEEEEcCcc
Confidence 589999986543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.4e-05 Score=84.05 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=76.0
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC----C----------------CEEEEEecCCCHHHHHHHHHc----C
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ----N----------------VTIVSTALNLGAPFNEMIALR----G 361 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----g----------------~~V~gvdiDiS~~~l~~a~~r----g 361 (467)
.+.+++...++. +|||.|||+|.+...+++. + ..++| +|+++.+.+.++.+ +
T Consensus 160 ~mv~~l~p~~~~--~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~G--iEid~~~~~lA~~nl~l~g 235 (541)
T 2ar0_A 160 TIIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIG--LELVPGTRRLALMNCLLHD 235 (541)
T ss_dssp HHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEE--EESCHHHHHHHHHHHHTTT
T ss_pred HHHHHhccCCCC--eEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEE--EcCCHHHHHHHHHHHHHhC
Confidence 344555555554 8999999999998777653 1 36888 55566666665432 3
Q ss_pred C-------ccEEEccCCCCc-cCCCccceEEeccccccccc-----------hhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 362 L-------IPLYVTLNQRLP-FFDNTMDLIHTTGFMDGWLD-----------MLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 362 ~-------i~~~~~d~~~Lp-f~d~sFDlVis~~~L~h~~~-----------~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
. +.+.++|....+ ...+.||+|+++..+..... ...-..++..+.+.|||||++.+..+.
T Consensus 236 i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 236 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 1 568888876544 44578999999876632211 111136889999999999999887653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=9.2e-06 Score=83.53 Aligned_cols=91 Identities=18% Similarity=0.058 Sum_probs=66.7
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----c---------------CC--ccEEEccCCCCcc-
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----R---------------GL--IPLYVTLNQRLPF- 375 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----r---------------g~--i~~~~~d~~~Lpf- 375 (467)
+|||+|||+|.++..++++ +..|++ +|+++.+++.+++ . +. +.++++|+..+..
T Consensus 50 ~VLDl~aGtG~~~l~~a~~~~~~~V~a--vDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 50 IVLDALSATGIRGIRFALETPAEEVWL--NDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp EEEESSCTTSHHHHHHHHHSSCSEEEE--EESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred EEEECCCchhHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 8999999999999999987 357888 6666777666643 3 32 6678888765532
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+.||+|+..- . ... ..++..+.+.|||||.++++.
T Consensus 128 ~~~~fD~I~lDP-~---~~~---~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP-F---GSP---MEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC-S---SCC---HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC-C---CCH---HHHHHHHHHhcCCCCEEEEEe
Confidence 246799999653 2 111 368899999999999888753
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.7e-05 Score=77.14 Aligned_cols=77 Identities=9% Similarity=0.103 Sum_probs=58.1
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCE--EEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCC---
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVT--IVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFD--- 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~--V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d--- 377 (467)
+.+.+.+.++. +|||||||+|.++. +. ++.. |++ +|+++.|++.++++- .+.++++|+..+++++
T Consensus 13 iv~~~~~~~~~--~VLEIG~G~G~lt~-l~-~~~~~~v~a--vEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 13 IVSAINPQKGQ--AMVEIGPGLAALTE-PV-GERLDQLTV--IELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHCCCTTC--CEEEECCTTTTTHH-HH-HTTCSCEEE--ECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHhcCCCCcC--EEEEECCCCcHHHH-hh-hCCCCeEEE--EECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 44455666666 89999999999999 65 4566 888 778899999887652 4789999998887643
Q ss_pred --CccceEEecccc
Q 012235 378 --NTMDLIHTTGFM 389 (467)
Q Consensus 378 --~sFDlVis~~~L 389 (467)
+..|.|+++...
T Consensus 87 ~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 87 KMGQPLRVFGNLPY 100 (252)
T ss_dssp HHTSCEEEEEECCT
T ss_pred ccCCceEEEECCCC
Confidence 234688888765
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.7e-05 Score=85.07 Aligned_cols=109 Identities=15% Similarity=-0.018 Sum_probs=71.1
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--------------------------------------------CEE
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--------------------------------------------VTI 342 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--------------------------------------------~~V 342 (467)
+..+....++. .+||.+||+|+++..++..+ ..+
T Consensus 182 ll~~~~~~~~~--~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i 259 (703)
T 3v97_A 182 IVMRSGWQPGT--PLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHF 259 (703)
T ss_dssp HHHHTTCCTTS--CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred HHHhhCCCCCC--eEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccE
Confidence 33444455554 89999999999987766431 467
Q ss_pred EEEecCCCHHHHHHHHHc----CC---ccEEEccCCCCc--cCCCccceEEeccccc-cccchhhHHHHHH---HHHhcc
Q 012235 343 VSTALNLGAPFNEMIALR----GL---IPLYVTLNQRLP--FFDNTMDLIHTTGFMD-GWLDMLLLDFILF---DWDRIL 409 (467)
Q Consensus 343 ~gvdiDiS~~~l~~a~~r----g~---i~~~~~d~~~Lp--f~d~sFDlVis~~~L~-h~~~~~~l~~~L~---el~RvL 409 (467)
+| .|+++.+++.++.+ |. +.+.++|+..+. ..+++||+|+++-..- .+.+...+..+.. ++.+.+
T Consensus 260 ~G--~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 260 YG--SDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp EE--EESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred EE--EECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 88 66667787776543 43 688999988874 3344899999996542 2222223344444 444555
Q ss_pred CCCcEEEEEe
Q 012235 410 RPGGLLWIDR 419 (467)
Q Consensus 410 KPGG~LiI~~ 419 (467)
.|||.+++.+
T Consensus 338 ~~g~~~~ilt 347 (703)
T 3v97_A 338 FGGWNLSLFS 347 (703)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCeEEEEe
Confidence 6899998865
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.8e-05 Score=80.41 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=67.1
Q ss_pred eEEEECCCccHHHHHHhhC--C-CEEEEEecCCCHHHHHHHHH----cCC----ccEEEccCCCCc--cCCCccceEEec
Q 012235 320 IGLDFGVGTGTFAARMREQ--N-VTIVSTALNLGAPFNEMIAL----RGL----IPLYVTLNQRLP--FFDNTMDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g-~~V~gvdiDiS~~~l~~a~~----rg~----i~~~~~d~~~Lp--f~d~sFDlVis~ 386 (467)
+|||++||+|.++..++.+ | ..|++ +|+++.+++.+.+ .+. +.++.+|+..+- ...+.||+|+..
T Consensus 55 ~VLDlfaGtG~~sl~aa~~~~ga~~V~a--vDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 55 KVADPLSASGIRAIRFLLETSCVEKAYA--NDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp EEEESSCTTSHHHHHHHHHCSCEEEEEE--ECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred EEEECCCcccHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 8999999999999999985 4 46777 7777877776654 232 567778865432 224689999987
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
- . ... ..++..+.+.|+|||.++++.
T Consensus 133 P-~---g~~---~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P-F---GTP---VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C-S---SCC---HHHHHHHHHHEEEEEEEEEEE
T ss_pred C-C---cCH---HHHHHHHHHHhCCCCEEEEEe
Confidence 6 2 111 358889999999999888754
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=6.2e-05 Score=82.26 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=62.8
Q ss_pred ceEEEECCCccHH---HHHHhhC-CC--EEEEEecCCCHHH---HHHHHHcC---CccEEEccCCCCccCCCccceEEec
Q 012235 319 RIGLDFGVGTGTF---AARMREQ-NV--TIVSTALNLGAPF---NEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~---a~~La~~-g~--~V~gvdiDiS~~~---l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
.+|||+|||+|.+ +...+++ +. +|++ ++.++.+ ++..+.++ .|++++++++++..+ +.+|+|+|-
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyA--VEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYA--VEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEE--EESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEE--EECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 4799999999977 4444444 34 4566 5555422 22223334 389999999998764 789999995
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLL 415 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~L 415 (467)
..= .+...+.+...+....|.|||||.+
T Consensus 436 wMG-~fLl~E~mlevL~Ardr~LKPgGim 463 (637)
T 4gqb_A 436 LLG-SFADNELSPECLDGAQHFLKDDGVS 463 (637)
T ss_dssp CCB-TTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred cCc-ccccccCCHHHHHHHHHhcCCCcEE
Confidence 433 2222333457888899999999986
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.75 E-value=4.3e-05 Score=84.04 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=65.2
Q ss_pred ceEEEECCCccHHHHH---Hhh-CC-----------CEEEEEecCCCHHHHHHH---HHcC---CccEEEccCCCCccC-
Q 012235 319 RIGLDFGVGTGTFAAR---MRE-QN-----------VTIVSTALNLGAPFNEMI---ALRG---LIPLYVTLNQRLPFF- 376 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~---La~-~g-----------~~V~gvdiDiS~~~l~~a---~~rg---~i~~~~~d~~~Lpf~- 376 (467)
.+|||+|||+|.++.. .++ .+ ..|++ ++.++.+...+ ..++ .|.++.++++++..+
T Consensus 411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA--VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI--VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE--EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHH
T ss_pred cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE--EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccc
Confidence 4799999999988532 221 12 36777 55555433222 2233 489999999998774
Q ss_pred ----CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 377 ----DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 377 ----d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
.+..|+|+|-..- .+...+.....|..+.|.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElmG-sfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLG-SFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCB-TTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccc-cccchhccHHHHHHHHHhCCCCcEEE
Confidence 6889999996653 34444445678888899999999863
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=8.8e-05 Score=72.31 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=72.4
Q ss_pred ceEEEECCCccHHHHHHhhC-------C-------CEEEEEecCC-CHHHHHHH-----------HH-------------
Q 012235 319 RIGLDFGVGTGTFAARMREQ-------N-------VTIVSTALNL-GAPFNEMI-----------AL------------- 359 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-------g-------~~V~gvdiDi-S~~~l~~a-----------~~------------- 359 (467)
.+|||||+|+|..+..+++. + ..+++++.+. +.+.++.+ ..
T Consensus 62 ~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~ 141 (257)
T 2qy6_A 62 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 141 (257)
T ss_dssp EEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEE
T ss_pred CEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchh
Confidence 48999999999877665432 1 4678877663 33333322 11
Q ss_pred -----cC--CccEEEccCCC-CccCCC----ccceEEecc-ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCC
Q 012235 360 -----RG--LIPLYVTLNQR-LPFFDN----TMDLIHTTG-FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKD 426 (467)
Q Consensus 360 -----rg--~i~~~~~d~~~-Lpf~d~----sFDlVis~~-~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~ 426 (467)
.+ .+.++.+|+.. ++..+. .||+|+... +...-++- -...++.++.|+|||||+|+. |...
T Consensus 142 r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~l-w~~~~l~~l~~~L~pGG~l~t--ysaa--- 215 (257)
T 2qy6_A 142 RLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDM-WTQNLFNAMARLARPGGTLAT--FTSA--- 215 (257)
T ss_dssp EEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGG-CCHHHHHHHHHHEEEEEEEEE--SCCB---
T ss_pred heeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhh-cCHHHHHHHHHHcCCCcEEEE--EeCC---
Confidence 11 14577788655 443332 799999853 22111110 014699999999999999874 3322
Q ss_pred HHHHHHHHHHcCceee
Q 012235 427 LDDYMYMFLQFRYKKH 442 (467)
Q Consensus 427 ~~~~~~~i~~~Gf~~l 442 (467)
..+...+...||...
T Consensus 216 -~~vrr~L~~aGF~v~ 230 (257)
T 2qy6_A 216 -GFVRRGLQEAGFTMQ 230 (257)
T ss_dssp -HHHHHHHHHHTEEEE
T ss_pred -HHHHHHHHHCCCEEE
Confidence 257778888899854
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.65 E-value=4.2e-05 Score=79.56 Aligned_cols=67 Identities=9% Similarity=-0.049 Sum_probs=53.8
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc------CC--ccEEEccCCCC-cc-CCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR------GL--IPLYVTLNQRL-PF-FDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r------g~--i~~~~~d~~~L-pf-~d~sFDlVis~~~ 388 (467)
+|||+|||+|..+..+++.+..|++ +|+++.+++.++.+ +. +.++++|+..+ +. .+++||+|++.-.
T Consensus 96 ~VLDLgcG~G~~al~LA~~g~~V~~--VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPP 172 (410)
T 3ll7_A 96 KVVDLTGGLGIDFIALMSKASQGIY--IERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPA 172 (410)
T ss_dssp EEEESSCSSSHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCE
T ss_pred EEEEeCCCchHHHHHHHhcCCEEEE--EECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCC
Confidence 8999999999999999999999999 67778888777543 43 78999998764 32 3468999998643
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00046 Score=70.52 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=84.7
Q ss_pred hHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHH----cC--------CccEEEc
Q 012235 303 VDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIAL----RG--------LIPLYVT 368 (467)
Q Consensus 303 ~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~----rg--------~i~~~~~ 368 (467)
.......+++.++|+ +|||+.+|.|+=+..|++.+. .+++ .|+++.-++.+.+ .+ .+.+...
T Consensus 136 aS~l~~~~L~~~pg~--~VLD~CAaPGGKT~~la~~~~~~~l~A--~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~ 211 (359)
T 4fzv_A 136 ASLLPVLALGLQPGD--IVLDLCAAPGGKTLALLQTGCCRNLAA--NDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSW 211 (359)
T ss_dssp GGHHHHHHHCCCTTE--EEEESSCTTCHHHHHHHHTTCEEEEEE--ECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECC
T ss_pred HHHHHHHHhCCCCCC--EEEEecCCccHHHHHHHHhcCCCcEEE--EcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeC
Confidence 334556678888888 999999999999999998855 4555 6777655544432 11 2456666
Q ss_pred cCCCCc-cCCCccceEEec----c---ccc--------cccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCC
Q 012235 369 LNQRLP-FFDNTMDLIHTT----G---FMD--------GWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKD 426 (467)
Q Consensus 369 d~~~Lp-f~d~sFDlVis~----~---~L~--------h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~ 426 (467)
|...++ ...+.||.|+.. . ... .+... ..-..+|....+.|||||+++.++.....++
T Consensus 212 D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~E 291 (359)
T 4fzv_A 212 DGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQ 291 (359)
T ss_dssp CGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTT
T ss_pred chhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhh
Confidence 776664 456789999952 2 110 11110 0113678889999999999999987776554
Q ss_pred HH-HHHHHHH
Q 012235 427 LD-DYMYMFL 435 (467)
Q Consensus 427 ~~-~~~~~i~ 435 (467)
.+ .+...++
T Consensus 292 NE~vV~~~L~ 301 (359)
T 4fzv_A 292 NEYVVQGAIE 301 (359)
T ss_dssp THHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 44 4444443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00062 Score=67.76 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=78.8
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCCC-ccCCCccceE
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQRL-PFFDNTMDLI 383 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~L-pf~d~sFDlV 383 (467)
.++||=||.|.|..++.+.+. ...|+.++ +.+..++.+++- ..+.++.+|+..+ .-..++||+|
T Consensus 84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VE--ID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHKNVESITMVE--IDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCTTCCEEEEEE--SCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCeEEEECCCchHHHHHHHHcCCcceEEEEc--CCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 458999999999999999987 34677744 446666655431 2377889987665 3456789999
Q ss_pred Eecccc-----ccccchhhHHHHHHHHHhccCCCcEEEEE--ecccCCCCHHHHHHHHHHcCceee
Q 012235 384 HTTGFM-----DGWLDMLLLDFILFDWDRILRPGGLLWID--RFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 384 is~~~L-----~h~~~~~~l~~~L~el~RvLKPGG~LiI~--~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
+....= .+... ..+++.+.++|+|||.++.. .++...+......+.+++. |..+
T Consensus 162 i~D~~dp~~~~~~L~t----~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~-F~~v 222 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFT----SAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY-FSDV 222 (294)
T ss_dssp EESCCCCCCTTCCSSC----CHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHH-CSEE
T ss_pred EEeCCCcCCCchhhcC----HHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhh-CCce
Confidence 975421 11122 36899999999999999884 3333333333445555555 4433
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00047 Score=65.01 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=61.7
Q ss_pred ceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHH----HcC-----CccEEEccCCC---------------C
Q 012235 319 RIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIA----LRG-----LIPLYVTLNQR---------------L 373 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~----~rg-----~i~~~~~d~~~---------------L 373 (467)
++|||+||| +-+..+++. +.+|++++ .++...+.++ +.+ .+.++.+++.. +
T Consensus 32 ~~VLEiGtG--ySTl~lA~~~~g~VvtvE--~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAELPGKHVTSVE--SDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp SEEEEESCS--HHHHHHHTSTTCEEEEEE--SCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CEEEEECch--HHHHHHHHcCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 389999985 677777776 67888844 4555555543 334 27788888543 2
Q ss_pred c--------c-CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 374 P--------F-FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 374 p--------f-~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+ . ..++||+|+...-.. ...+..+.+.|+|||.+++++.
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHHHHHHCSSCEEEEETTG
T ss_pred HHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHHHHHhcCCCeEEEEeCC
Confidence 2 1 137899999887541 2456667799999999988764
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00015 Score=77.85 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=78.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-----------------CCEEEEEecCCCHHHHHHHHH----cCC---
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-----------------NVTIVSTALNLGAPFNEMIAL----RGL--- 362 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----------------g~~V~gvdiDiS~~~l~~a~~----rg~--- 362 (467)
+.+++...++ +|||.+||+|.+...+++. ...++| +|+.+.+.+.++. .+.
T Consensus 237 mv~ll~p~~~---~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G--~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 237 IVEMLEPYKG---RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYG--QESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHCCCSE---EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEE--CCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHhcCCC---eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEE--EeCCHHHHHHHHHHHHHhCCCcc
Confidence 4444444332 8999999999988776432 345666 7777777776653 232
Q ss_pred ccEEEccCCCCc-cCCCccceEEecccccc--ccch-----------------------h-hHHHHHHHHHhccCCCcEE
Q 012235 363 IPLYVTLNQRLP-FFDNTMDLIHTTGFMDG--WLDM-----------------------L-LLDFILFDWDRILRPGGLL 415 (467)
Q Consensus 363 i~~~~~d~~~Lp-f~d~sFDlVis~~~L~h--~~~~-----------------------~-~l~~~L~el~RvLKPGG~L 415 (467)
+.+.++|....+ +.+..||+|+++-.+.. |... . .--.++..+.+.|+|||++
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 391 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM 391 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence 233667755444 45678999999876632 2110 0 0015788999999999999
Q ss_pred EEEeccc---CC-CCHHHHHHHHHHc
Q 012235 416 WIDRFFC---NK-KDLDDYMYMFLQF 437 (467)
Q Consensus 416 iI~~~~~---~~-~~~~~~~~~i~~~ 437 (467)
.+..+.. .. .....+.+.+-+-
T Consensus 392 aiVlP~g~L~~~~~~~~~iRk~Lle~ 417 (544)
T 3khk_A 392 ALLLANGSMSSNTNNEGEIRKTLVEQ 417 (544)
T ss_dssp EEEEETHHHHCCGGGHHHHHHHHHHT
T ss_pred EEEecchhhhcCcchHHHHHHHHHhC
Confidence 8876432 12 1233566655544
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00017 Score=71.74 Aligned_cols=122 Identities=12% Similarity=0.004 Sum_probs=72.7
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhC-CCE-EEEEecCCCH---HHHHHHHHcCCccEEEc-cCCCCccCCCccceEE
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQ-NVT-IVSTALNLGA---PFNEMIALRGLIPLYVT-LNQRLPFFDNTMDLIH 384 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~-V~gvdiDiS~---~~l~~a~~rg~i~~~~~-d~~~Lpf~d~sFDlVi 384 (467)
..++++. +|||+||++|.|+...+.. |+. |+++|+-... +++-+-..-.++.+..+ |+..++. ..+|+|+
T Consensus 90 ~~l~~~~--~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~iv 165 (321)
T 3lkz_A 90 RFLEPVG--KVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLL 165 (321)
T ss_dssp TSCCCCE--EEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEE
T ss_pred cCCCCCC--EEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEE
Confidence 4466676 9999999999999977766 654 7785553221 00000000012566666 6666654 6699999
Q ss_pred eccccc---cccchhhHHHHHHHHHhccCCC-cEEEEEecccCCCCHHHHHHHHHH
Q 012235 385 TTGFMD---GWLDMLLLDFILFDWDRILRPG-GLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 385 s~~~L~---h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
|.-.=. .+.+......+|.-+.+.|++| |.|++-.+.....+..++.+.+++
T Consensus 166 cDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~ 221 (321)
T 3lkz_A 166 CDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQR 221 (321)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred EECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHH
Confidence 976521 1122211123667778999999 999886655544444344444443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00029 Score=68.04 Aligned_cols=120 Identities=12% Similarity=-0.033 Sum_probs=72.5
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCE-EEEEecCCCHH---HHHHHHHcCCccEEEc-cCCCCccCCCccceEEe
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVT-IVSTALNLGAP---FNEMIALRGLIPLYVT-LNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~-V~gvdiDiS~~---~l~~a~~rg~i~~~~~-d~~~Lpf~d~sFDlVis 385 (467)
.++++. +|||+||++|.|+...+.. |+. |+++|+-.... ++-+..--+.+.|..+ |...++- ..+|.|+|
T Consensus 75 ~l~~g~--~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~Dtllc 150 (267)
T 3p8z_A 75 MVIPEG--RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKCDTLLC 150 (267)
T ss_dssp SSCCCE--EEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCCSEEEE
T ss_pred CCCCCC--EEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--ccccEEEE
Confidence 566776 9999999999999977766 544 77755432211 1100001123778887 7666653 67999999
Q ss_pred cccccccc---chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH
Q 012235 386 TGFMDGWL---DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 386 ~~~L~h~~---~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
...-..-. +......+|+-+.+.|++ |.|++-.+.....+..++.+.+++
T Consensus 151 DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~ 203 (267)
T 3p8z_A 151 DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQR 203 (267)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHH
T ss_pred ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHH
Confidence 77653222 221112366777899999 788885554444333344444443
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00039 Score=74.70 Aligned_cols=116 Identities=13% Similarity=0.049 Sum_probs=74.8
Q ss_pred eEEEECCCccHHHHHHhhC-----CCEEEEEecCCCHHHHHHHHH----cCC----ccEEEccCCCC--c-cCCCccceE
Q 012235 320 IGLDFGVGTGTFAARMREQ-----NVTIVSTALNLGAPFNEMIAL----RGL----IPLYVTLNQRL--P-FFDNTMDLI 383 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-----g~~V~gvdiDiS~~~l~~a~~----rg~----i~~~~~d~~~L--p-f~d~sFDlV 383 (467)
+|||.+||+|.+...+++. ...++|+ |+.+.+...++. .+. +.+.++|.... | .....||+|
T Consensus 224 ~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~--Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~I 301 (542)
T 3lkd_A 224 TLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ--ELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGV 301 (542)
T ss_dssp EEEETTCTTSTTGGGHHHHCSCTTTCEEEEE--ESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEE
T ss_pred EEeecccchhHHHHHHHHHHHhccCceEEEE--ECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEE
Confidence 8999999999988777665 5678884 455555555543 332 45788887655 4 456789999
Q ss_pred Eeccccc-cccch------------------h-hHHHHHHHHHhccC-CCcEEEEEeccc--CCCC-HHHHHHHHHHc
Q 012235 384 HTTGFMD-GWLDM------------------L-LLDFILFDWDRILR-PGGLLWIDRFFC--NKKD-LDDYMYMFLQF 437 (467)
Q Consensus 384 is~~~L~-h~~~~------------------~-~l~~~L~el~RvLK-PGG~LiI~~~~~--~~~~-~~~~~~~i~~~ 437 (467)
+++-.+. .|... . .--.++..+.+.|+ |||++.+..+.. .+.. ...+++.+-+-
T Consensus 302 vaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~ 379 (542)
T 3lkd_A 302 LMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEE 379 (542)
T ss_dssp EECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHT
T ss_pred EecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhC
Confidence 9985542 12100 0 00147899999999 999998876543 1222 23555655443
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00076 Score=60.66 Aligned_cols=84 Identities=14% Similarity=0.020 Sum_probs=58.2
Q ss_pred eEEEECCCcc-HHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCC-CccceEEeccccccccchh
Q 012235 320 IGLDFGVGTG-TFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFD-NTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 320 ~VLDIGCGtG-~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d-~sFDlVis~~~L~h~~~~~ 396 (467)
+|||||||.| ..|..|++ .|.+|+++|++..+ +.++.+|+.+..... ..||+|.+.....-
T Consensus 38 rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~A-----------v~~v~dDiF~P~~~~Y~~~DLIYsirPP~E----- 101 (153)
T 2k4m_A 38 RVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSH-----------GGIVRDDITSPRMEIYRGAALIYSIRPPAE----- 101 (153)
T ss_dssp EEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSS-----------TTEECCCSSSCCHHHHTTEEEEEEESCCTT-----
T ss_pred cEEEEccCCChHHHHHHHHhCCCeEEEEECCccc-----------cceEEccCCCCcccccCCcCEEEEcCCCHH-----
Confidence 8999999999 69999997 89999997665432 338888887632211 48999998776521
Q ss_pred hHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+...+.++.+- -|.-++|..+..
T Consensus 102 -l~~~i~~lA~~--v~adliI~pL~~ 124 (153)
T 2k4m_A 102 -IHSSLMRVADA--VGARLIIKPLTG 124 (153)
T ss_dssp -THHHHHHHHHH--HTCEEEEECBTT
T ss_pred -HHHHHHHHHHH--cCCCEEEEcCCC
Confidence 23455555554 356677755543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0022 Score=63.85 Aligned_cols=135 Identities=13% Similarity=0.030 Sum_probs=81.7
Q ss_pred CCCCCceEEEECC------CccHHH-HHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEec
Q 012235 314 KPGETRIGLDFGV------GTGTFA-ARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 314 ~~g~~r~VLDIGC------GtG~~a-~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
..+. +|||+|+ -.|.+. +.+...|..++++|+..-.. ..-.++++|+..+.. .+.||+|+|.
T Consensus 108 p~gm--rVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s--------da~~~IqGD~~~~~~-~~k~DLVISD 176 (344)
T 3r24_A 108 PYNM--RVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS--------DADSTLIGDCATVHT-ANKWDLIISD 176 (344)
T ss_dssp CTTC--EEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC--------SSSEEEESCGGGEEE-SSCEEEEEEC
T ss_pred cCCC--EEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc--------CCCeEEEcccccccc-CCCCCEEEec
Confidence 3455 8999997 567643 23333356788876653110 111358888766443 5889999997
Q ss_pred ccccc--ccc------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE--EccCCCCceEE
Q 012235 387 GFMDG--WLD------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA--ISPKSKDEVYL 456 (467)
Q Consensus 387 ~~L~h--~~~------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~--~~~k~~devyl 456 (467)
.+..- ..+ ..-.+.++.-+.++|+|||.|++-.|-... . +.+.++.+ .|+.++-. ...+...|+|+
T Consensus 177 MAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg-~-~~L~~lrk--~F~~VK~fK~ASRa~SsEvYL 252 (344)
T 3r24_A 177 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW-N-ADLYKLMG--HFSWWTAFVTNVNASSSEAFL 252 (344)
T ss_dssp CCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-C-HHHHHHHT--TEEEEEEEEEGGGTTSSCEEE
T ss_pred CCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC-H-HHHHHHHh--hCCeEEEECCCCCCCCeeEEE
Confidence 65521 011 112356677778899999999998776655 2 34545444 36655443 22336678999
Q ss_pred EEEeecC
Q 012235 457 SALLEKP 463 (467)
Q Consensus 457 ~avlqKP 463 (467)
.++=-|.
T Consensus 253 VG~gfKg 259 (344)
T 3r24_A 253 IGANYLG 259 (344)
T ss_dssp EEEEECS
T ss_pred EeeeccC
Confidence 8765543
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00099 Score=74.43 Aligned_cols=100 Identities=13% Similarity=-0.005 Sum_probs=65.1
Q ss_pred eEEEECCCccHHHHHHhhCC-----CEEEEEecCCCHHHHHHH--HH--------cCC--ccEEEccCCCC-ccCCCccc
Q 012235 320 IGLDFGVGTGTFAARMREQN-----VTIVSTALNLGAPFNEMI--AL--------RGL--IPLYVTLNQRL-PFFDNTMD 381 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g-----~~V~gvdiDiS~~~l~~a--~~--------rg~--i~~~~~d~~~L-pf~d~sFD 381 (467)
+|||.|||+|.++..++++. ..++| .|+++.+++.+ +. .+. ..+...+.... +...+.||
T Consensus 324 rVLDPaCGSG~FLIaaA~~l~ei~~~~IyG--vEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 324 VISDPAAGSGNLLATVSAGFNNVMPRQIWA--NDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp EEEETTCTTSHHHHHHHHTSTTCCGGGEEE--ECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred EEEECCCCccHHHHHHHHHhcccCCCeEEE--EECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 89999999999999988763 36788 55556666655 21 111 12333344332 23457899
Q ss_pred eEEecccccc-ccch-------------------------hhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 382 LIHTTGFMDG-WLDM-------------------------LLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 382 lVis~~~L~h-~~~~-------------------------~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
+|+++-.... +... .....++..+.+.|+|||++.+..+.
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 9999877622 1111 01234678899999999999887654
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0031 Score=62.33 Aligned_cols=115 Identities=15% Similarity=0.051 Sum_probs=73.8
Q ss_pred eEEEECCCccHHHHHHhhC-------CCEEEEEecCCC---------------------------HH-HHHHHHHc----
Q 012235 320 IGLDFGVGTGTFAARMREQ-------NVTIVSTALNLG---------------------------AP-FNEMIALR---- 360 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-------g~~V~gvdiDiS---------------------------~~-~l~~a~~r---- 360 (467)
.||++|+..|..+..|++. +.+++++|.... .+ +.+...+.
T Consensus 109 ~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~~ 188 (282)
T 2wk1_A 109 DLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLLD 188 (282)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCCS
T ss_pred cEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCCCc
Confidence 7999999999888777542 557888764311 00 11222222
Q ss_pred CCccEEEccCCC-Cc-cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC
Q 012235 361 GLIPLYVTLNQR-LP-FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR 438 (467)
Q Consensus 361 g~i~~~~~d~~~-Lp-f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G 438 (467)
..+.++.+++.+ +| +++++||+|+...-.. .. ....+..+...|+|||+++++++.........+.+..+..|
T Consensus 189 ~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~---~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~~~~ 263 (282)
T 2wk1_A 189 EQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ES---TWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRAKFD 263 (282)
T ss_dssp TTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HH---HHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHHHTT
T ss_pred CceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--cc---HHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 347899998543 44 3357899999876431 11 24689999999999999999887431222225556666655
Q ss_pred c
Q 012235 439 Y 439 (467)
Q Consensus 439 f 439 (467)
.
T Consensus 264 i 264 (282)
T 2wk1_A 264 I 264 (282)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0032 Score=62.30 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=58.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc--CCccEEEccCCCCcc-----CCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR--GLIPLYVTLNQRLPF-----FDN 378 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r--g~i~~~~~d~~~Lpf-----~d~ 378 (467)
.+.+.+.+.+++ ++||.+||.|..+..+++++..|+| +|.++.+++.+.+- +.+.+++++...++. ..+
T Consensus 13 e~le~L~~~~gg--~~VD~T~G~GGHS~~il~~~g~Vig--iD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~ 88 (285)
T 1wg8_A 13 EALDLLAVRPGG--VYVDATLGGAGHARGILERGGRVIG--LDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVE 88 (285)
T ss_dssp HHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCS
T ss_pred HHHHhhCCCCCC--EEEEeCCCCcHHHHHHHHCCCEEEE--EeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCC
Confidence 344566777777 8999999999999999998778999 66667777776551 247888998877641 225
Q ss_pred ccceEEec
Q 012235 379 TMDLIHTT 386 (467)
Q Consensus 379 sFDlVis~ 386 (467)
++|.|++.
T Consensus 89 ~vDgIL~D 96 (285)
T 1wg8_A 89 RVDGILAD 96 (285)
T ss_dssp CEEEEEEE
T ss_pred CcCEEEeC
Confidence 79999964
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0062 Score=62.60 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=76.6
Q ss_pred CceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc--------------CCccEEEccCCCCc----cCCC
Q 012235 318 TRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR--------------GLIPLYVTLNQRLP----FFDN 378 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r--------------g~i~~~~~d~~~Lp----f~d~ 378 (467)
.++||=||.|.|..++.+.+.. ..|+. +++.+..++.+++- ..+.++.+|+..+- -..+
T Consensus 206 pkrVLIIGgGdG~~~revlkh~~~~V~~--VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 206 GKDVLILGGGDGGILCEIVKLKPKMVTM--VEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCCSEEEE--EESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCeEEEECCCcHHHHHHHHhcCCceeEE--EccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999998864 45666 55667777777652 12456777765431 2356
Q ss_pred ccceEEecccc-------ccccchhhHHHHHHHHHhccCCCcEEEEEec-ccCCCCHHHHHHHHHHcCceee
Q 012235 379 TMDLIHTTGFM-------DGWLDMLLLDFILFDWDRILRPGGLLWIDRF-FCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 379 sFDlVis~~~L-------~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~-~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
.||+|+....- .+.....-.+.+++.+.++|+|||.++...- ....+....+.+.+++. |..+
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v-F~~v 354 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL-YCPV 354 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS-SSCE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh-CCcc
Confidence 89999976321 0111111124678899999999999887421 11122233566666666 5444
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.05 Score=58.11 Aligned_cols=111 Identities=21% Similarity=0.198 Sum_probs=68.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---------------CCEEEEEecCCCHHHHHHHHH----cCC--cc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---------------NVTIVSTALNLGAPFNEMIAL----RGL--IP 364 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---------------g~~V~gvdiDiS~~~l~~a~~----rg~--i~ 364 (467)
.+.+++...++. +|+|-+||+|.|.....++ ...++|.++| +.+...+.- .+. ..
T Consensus 208 lmv~l~~p~~~~--~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~--~~~~~la~mNl~lhg~~~~~ 283 (530)
T 3ufb_A 208 FMVEVMDPQLGE--SVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAK--SLPYLLVQMNLLLHGLEYPR 283 (530)
T ss_dssp HHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCS--HHHHHHHHHHHHHHTCSCCE
T ss_pred HHHHhhccCCCC--EEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhcc--HHHHHHHHHHHHhcCCcccc
Confidence 445566666665 8999999999998766542 2457885544 444444432 332 45
Q ss_pred EEEccCCCCcc----CCCccceEEecccccccc-------------chhhHHHHHHHHHhccC-------CCcEEEEEec
Q 012235 365 LYVTLNQRLPF----FDNTMDLIHTTGFMDGWL-------------DMLLLDFILFDWDRILR-------PGGLLWIDRF 420 (467)
Q Consensus 365 ~~~~d~~~Lpf----~d~sFDlVis~~~L~h~~-------------~~~~l~~~L~el~RvLK-------PGG~LiI~~~ 420 (467)
+..+|....|. ....||+|+++-.+..-. ....--.++..+.+.|| |||++.+..+
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 66777665543 235799999997763110 00111245667777776 7999988765
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.015 Score=57.08 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=36.1
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR 360 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r 360 (467)
.+++ +|||++||+|+.+..+++.|..++| +|+++.+++.+.++
T Consensus 234 ~~~~--~vlD~f~GsGt~~~~a~~~g~~~~g--~e~~~~~~~~a~~r 276 (297)
T 2zig_A 234 FVGD--VVLDPFAGTGTTLIAAARWGRRALG--VELVPRYAQLAKER 276 (297)
T ss_dssp CTTC--EEEETTCTTTHHHHHHHHTTCEEEE--EESCHHHHHHHHHH
T ss_pred CCCC--EEEECCCCCCHHHHHHHHcCCeEEE--EeCCHHHHHHHHHH
Confidence 4565 8999999999999999999999999 66777887777654
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.15 Score=51.23 Aligned_cols=104 Identities=6% Similarity=0.016 Sum_probs=67.9
Q ss_pred CceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHH---HHHHHc-----------------------CCccEEEccCC
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFN---EMIALR-----------------------GLIPLYVTLNQ 371 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l---~~a~~r-----------------------g~i~~~~~d~~ 371 (467)
.+.|+.+|||..+.+.+|...+..+.-+++|...-+. +.+.+. ....++.+|+.
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~ 177 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN 177 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence 3589999999999999998753344455577633211 111221 22456666766
Q ss_pred CCcc---------CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 372 RLPF---------FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 372 ~Lpf---------~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+... ..+...++++-.++ ++.+.+....++..+.+.. |+|.+++.+...+
T Consensus 178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL-~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 178 DITETTRLLDVCTKREIPTIVISECLL-CYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp CHHHHHHHHHTTCCTTSCEEEEEESCG-GGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred CcHHHHHHHHhcCCCCCCEEEEEcchh-hCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 5321 23456778888888 7777777788888888877 7888876665554
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.054 Score=54.34 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=65.7
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccce
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDl 382 (467)
..+.+++ +||-+|+|. |..+..+++. |. .|++ ++.++..++.+++.|...++.....++ ...++.+|+
T Consensus 186 ~~~~~g~--~VlV~GaG~vG~~a~qlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 186 LKVTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIA--VDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp TCCCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEE--EESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--ECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 4566776 899999886 7788888775 77 6888 555677777777777433333222111 112237999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+-...- ...+.+..+.|+|||.+++...
T Consensus 262 vid~~g~---------~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 262 ALESTGS---------PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp EEECSCC---------HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEECCCC---------HHHHHHHHHHHhcCCEEEEeCC
Confidence 9866543 2578889999999999987543
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.15 Score=51.32 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=81.3
Q ss_pred eEEEECCCccHHHHHHhhCCC--E-EEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCcc---CCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV--T-IVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLPF---FDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~-V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lpf---~d~sFDlVis~~~L~h~ 392 (467)
+|+|+-||.|.++..+.+.|. . |.+ +|+.+.+++....+.. ..++.+|+..+.. +...+|+|+....=..+
T Consensus 4 ~v~dLFaG~Gg~~~g~~~~G~~~~~v~~--~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 4 RVLELYSGVGGMHHALRESCIPAQVVAA--IDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEE--ECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred eEEEeCcCccHHHHHHHHCCCCceEEEE--EeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 789999999999999998883 3 455 6777888887776643 5677888877642 12268999987541111
Q ss_pred c--------chhhHHHHHH---HHHhccC--CCcEEEEEecc--cCCCCHHHHHHHHHHcCceeeEEEEcc-C------C
Q 012235 393 L--------DMLLLDFILF---DWDRILR--PGGLLWIDRFF--CNKKDLDDYMYMFLQFRYKKHKWAISP-K------S 450 (467)
Q Consensus 393 ~--------~~~~l~~~L~---el~RvLK--PGG~LiI~~~~--~~~~~~~~~~~~i~~~Gf~~l~W~~~~-k------~ 450 (467)
. ++ ....++. ++.+.++ |.-. ++-.-. ......+.+.+.++.+||.. .|.+.. . .
T Consensus 82 S~ag~~~g~~d-~r~~l~~~~~~~i~~~~~~P~~~-~~ENV~~l~~~~~~~~i~~~l~~~GY~v-~~~vl~a~~~GvPQ~ 158 (343)
T 1g55_A 82 TRIGRQGDMTD-SRTNSFLHILDILPRLQKLPKYI-LLENVKGFEVSSTRDLLIQTIENCGFQY-QEFLLSPTSLGIPNS 158 (343)
T ss_dssp ---------------CHHHHHHHHGGGCSSCCSEE-EEEEETTGGGSHHHHHHHHHHHHTTEEE-EEEEECGGGGTCSCC
T ss_pred hhcCCcCCccC-ccchHHHHHHHHHHHhcCCCCEE-EEeCCccccCHHHHHHHHHHHHHCCCee-EEEEEEHHHCCCCCc
Confidence 1 11 0112344 4444555 6643 332111 12233457888889999965 454332 2 4
Q ss_pred CCceEEEEEe
Q 012235 451 KDEVYLSALL 460 (467)
Q Consensus 451 ~devyl~avl 460 (467)
+..+|+.+..
T Consensus 159 R~R~~iv~~~ 168 (343)
T 1g55_A 159 RLRYFLIAKL 168 (343)
T ss_dssp CCEEEEEEEE
T ss_pred ccEEEEEEEe
Confidence 5667777754
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.37 Score=48.07 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=53.7
Q ss_pred ccEEEccCCC-Cc-cCCCccceEEecc-cc----ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH
Q 012235 363 IPLYVTLNQR-LP-FFDNTMDLIHTTG-FM----DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL 435 (467)
Q Consensus 363 i~~~~~d~~~-Lp-f~d~sFDlVis~~-~L----~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~ 435 (467)
+.+..+|+.. ++ +.+..||+|+... +. +.|. +.++..++++++|||+|+ +|.... .+...+.
T Consensus 168 L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs-----~e~f~~l~~~~~pgg~la--TYtaag----~VRR~L~ 236 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWT-----LDFLSLIKERIDEKGYWV--SYSSSL----SVRKSLL 236 (308)
T ss_dssp EEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGS-----HHHHHHHHTTEEEEEEEE--ESCCCH----HHHHHHH
T ss_pred EEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCC-----HHHHHHHHHHhCCCcEEE--EEeCcH----HHHHHHH
Confidence 3466677543 33 3345799999753 22 1232 469999999999999865 455543 6788899
Q ss_pred HcCceeeEEEEccCCCCceEEEEEeecC
Q 012235 436 QFRYKKHKWAISPKSKDEVYLSALLEKP 463 (467)
Q Consensus 436 ~~Gf~~l~W~~~~k~~devyl~avlqKP 463 (467)
..||..-+-. +.-++.+ -+.+.+..|
T Consensus 237 ~aGF~V~k~~-G~g~KRe-ml~A~~~~~ 262 (308)
T 3vyw_A 237 TLGFKVGSSR-EIGRKRK-GTVASLKAP 262 (308)
T ss_dssp HTTCEEEEEE-CC---CE-EEEEESSSC
T ss_pred HCCCEEEecC-CCCCCCc-eeEEecCCC
Confidence 9999865432 2222333 344455444
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.086 Score=52.39 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=63.5
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
..+.+++ +||-+|+|. |.++..+++. |.+|+++ +.++..++.+.+.|.-.++ .+...+ ...+|+|+-...
T Consensus 172 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~~--~~~~~~~~~~~~lGa~~v~-~~~~~~---~~~~D~vid~~g 243 (348)
T 3two_A 172 SKVTKGT--KVGVAGFGGLGSMAVKYAVAMGAEVSVF--ARNEHKKQDALSMGVKHFY-TDPKQC---KEELDFIISTIP 243 (348)
T ss_dssp TTCCTTC--EEEEESCSHHHHHHHHHHHHTTCEEEEE--CSSSTTHHHHHHTTCSEEE-SSGGGC---CSCEEEEEECCC
T ss_pred cCCCCCC--EEEEECCcHHHHHHHHHHHHCCCeEEEE--eCCHHHHHHHHhcCCCeec-CCHHHH---hcCCCEEEECCC
Confidence 4667777 899999875 7777777765 8898884 5555666777777753333 332222 237999986544
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
- ...+....+.|+|||.+++...
T Consensus 244 ~---------~~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 244 T---------HYDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp S---------CCCHHHHHTTEEEEEEEEECCC
T ss_pred c---------HHHHHHHHHHHhcCCEEEEECC
Confidence 3 1257788899999999988543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.73 Score=46.89 Aligned_cols=138 Identities=12% Similarity=-0.035 Sum_probs=82.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCcc--------CCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPF--------FDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf--------~d~sFDlVis~~~L~ 390 (467)
+++|+-||.|.++..+.+.|..++. .+|+.+.+.+....+- ...++.+|+..+.. ....+|+|+....=.
T Consensus 4 ~vidLFsG~GGlslG~~~aG~~~v~-avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ 82 (376)
T 3g7u_A 4 NVIDLFSGVGGLSLGAARAGFDVKM-AVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ 82 (376)
T ss_dssp EEEEETCTTSHHHHHHHHHTCEEEE-EECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCC
T ss_pred eEEEEccCcCHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCC
Confidence 6899999999999999999987652 3677777777766653 35677788776642 246799999764311
Q ss_pred cc--------cch-hhHHHHHHHHHhccCCCcEEEEEecccCC-C---CHHHHHHHHHHcCceeeEEEEccC-------C
Q 012235 391 GW--------LDM-LLLDFILFDWDRILRPGGLLWIDRFFCNK-K---DLDDYMYMFLQFRYKKHKWAISPK-------S 450 (467)
Q Consensus 391 h~--------~~~-~~l~~~L~el~RvLKPGG~LiI~~~~~~~-~---~~~~~~~~i~~~Gf~~l~W~~~~k-------~ 450 (467)
.+ .+. ..+-..+.++.+.++|.-.++=....... . ..+.+. .++.+||....|.+..- .
T Consensus 83 ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v~~~~vl~a~dyGvPQ~ 161 (376)
T 3g7u_A 83 GFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDILDPIKVKASDYGAPTI 161 (376)
T ss_dssp TTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEECCCEEEEGGGGTCSBC
T ss_pred CcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCccCcEEEEEHhhCCCCCC
Confidence 11 111 11112233455566886443322211111 1 133555 78889998745554332 4
Q ss_pred CCceEEEEE
Q 012235 451 KDEVYLSAL 459 (467)
Q Consensus 451 ~devyl~av 459 (467)
+..+|+.+.
T Consensus 162 R~R~~iig~ 170 (376)
T 3g7u_A 162 RTRYFFIGV 170 (376)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 555677664
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.18 Score=50.81 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=67.5
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCC--------ccCC
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL--------PFFD 377 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L--------pf~d 377 (467)
....+.+++ +||=+|+|. |.++..+++. |. .|++ ++.++...+.+++.|...++.....++ ...+
T Consensus 176 ~~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~ 251 (370)
T 4ej6_A 176 DLSGIKAGS--TVAILGGGVIGLLTVQLARLAGATTVIL--STRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVP 251 (370)
T ss_dssp HHHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSST
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccC
Confidence 455677887 889899875 6777777765 87 7887 566777777777777533332221111 0223
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+.+|+|+-...- ...+.+..+.|++||.+++...
T Consensus 252 gg~Dvvid~~G~---------~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 252 GGVDVVIECAGV---------AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp TCEEEEEECSCC---------HHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCEEEECCCC---------HHHHHHHHHHhccCCEEEEEec
Confidence 479999975543 2578889999999999988543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.11 Score=46.96 Aligned_cols=95 Identities=20% Similarity=0.115 Sum_probs=57.8
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sFD 381 (467)
..+.+++ +||.+|+ |.|..+..++. .|.+|++++ .+++..+.+.+.+....+....... . ...+.+|
T Consensus 34 ~~~~~g~--~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~--~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 34 GRLSPGE--RVLIHSATGGVGMAAVSIAKMIGARIYTTA--GSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp SCCCTTC--EEEETTTTSHHHHHHHHHHHHHTCEEEEEE--SSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred hCCCCCC--EEEEeeCCChHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence 3456666 8999995 44655555554 488988854 4566666665545322221111111 0 1124699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+.+..+.|+|||.+++..
T Consensus 110 ~vi~~~g~----------~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 110 VVLNSLAG----------EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEEECCCT----------HHHHHHHHTEEEEEEEEECS
T ss_pred EEEECCch----------HHHHHHHHHhccCCEEEEEc
Confidence 99976432 36788899999999988754
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.2 Score=49.96 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=65.1
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEcc---CCCC----c-cCC
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTL---NQRL----P-FFD 377 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d---~~~L----p-f~d 377 (467)
....+.+++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|.-.++... ..++ . ...
T Consensus 165 ~~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~ 240 (356)
T 1pl8_A 165 RRGGVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVV--TDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLG 240 (356)
T ss_dssp HHHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--EESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhC
Confidence 445677777 899999875 7777777764 87 8888 45566667777776643333222 0111 0 011
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.+|+|+-.-.- ...+.+..++|+|||.+++..
T Consensus 241 ~g~D~vid~~g~---------~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 241 CKPEVTIECTGA---------EASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp SCCSEEEECSCC---------HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCEEEECCCC---------hHHHHHHHHHhcCCCEEEEEe
Confidence 569999866543 246788899999999998754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.16 Score=50.56 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=66.4
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCc
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~s 379 (467)
+...+.+++ +||=+|+|. |.++..+++. |. .|++ ++.++..++.+.+.|...++.....++. .....
T Consensus 160 ~~~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g 235 (352)
T 3fpc_A 160 ELANIKLGD--TVCVIGIGPVGLMSVAGANHLGAGRIFA--VGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKG 235 (352)
T ss_dssp HHTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSSEEE--ECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCC
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCC
Confidence 455677777 889999875 7778888776 77 7888 5666777778877775333332222211 12346
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+-...- ...+.+..+.|+|||.+++..
T Consensus 236 ~D~v~d~~g~---------~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 236 VDKVVIAGGD---------VHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp EEEEEECSSC---------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCEEEECCCC---------hHHHHHHHHHHhcCCEEEEec
Confidence 9999865443 246888999999999998753
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.29 Score=48.63 Aligned_cols=98 Identities=14% Similarity=0.034 Sum_probs=64.8
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccC-CCCc------cC---
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-QRLP------FF--- 376 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~~Lp------f~--- 376 (467)
....+.+++ +||-+|+|. |.++..+++. |..|++ ++.++..++.+.+.|.-.++.... .++. ..
T Consensus 162 ~~~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~ 237 (352)
T 1e3j_A 162 RRAGVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVVC--TARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI 237 (352)
T ss_dssp HHHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEE--EESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEE--EcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhcccc
Confidence 445677777 899999874 6777777764 888877 556677777777766432332221 1211 11
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+.+|+|+-...- ...+.+..+.|+|||.+++..
T Consensus 238 g~g~D~vid~~g~---------~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 238 GDLPNVTIDCSGN---------EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SSCCSEEEECSCC---------HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCCC---------HHHHHHHHHHHhcCCEEEEEe
Confidence 2469999876543 246788899999999988754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.18 Score=49.82 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=65.7
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc----cCCCccce
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP----FFDNTMDL 382 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp----f~d~sFDl 382 (467)
....+.+++ +||-+|+|. |..+..+++. |.+|++ ++.++..++.+.+.|...++.....++. -..+.+|+
T Consensus 160 ~~~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~ 235 (340)
T 3s2e_A 160 KVTDTRPGQ--WVVISGIGGLGHVAVQYARAMGLRVAA--VDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHG 235 (340)
T ss_dssp HTTTCCTTS--EEEEECCSTTHHHHHHHHHHTTCEEEE--EESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred HHcCCCCCC--EEEEECCCHHHHHHHHHHHHCCCeEEE--EeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCE
Confidence 334566776 888899875 8888888875 889988 5566777787877774333332221111 01236888
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+-...- ...+....+.|+|||.+++..
T Consensus 236 vid~~g~---------~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 236 VLVTAVS---------PKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp EEESSCC---------HHHHHHHHHHEEEEEEEEECS
T ss_pred EEEeCCC---------HHHHHHHHHHhccCCEEEEeC
Confidence 8765432 357888999999999998753
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.17 Score=51.38 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=66.9
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-c------cCCC
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-P------FFDN 378 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-p------f~d~ 378 (467)
....+.+++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|. ..+.....++ . ....
T Consensus 179 ~~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~~~~~~~g~ 253 (398)
T 2dph_A 179 VSAGVKPGS--HVYIAGAGPVGRCAAAGARLLGAACVIV--GDQNPERLKLLSDAGF-ETIDLRNSAPLRDQIDQILGKP 253 (398)
T ss_dssp HHTTCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEE--EESCHHHHHHHHTTTC-EEEETTSSSCHHHHHHHHHSSS
T ss_pred HHcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHcCC-cEEcCCCcchHHHHHHHHhCCC
Confidence 345677777 899999986 8888888875 87 8888 5566777777776664 3333222221 1 1123
Q ss_pred ccceEEeccccccc--------cchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 379 TMDLIHTTGFMDGW--------LDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 379 sFDlVis~~~L~h~--------~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+|+|+-.-.-... .+. ...+.+..++|++||++++..
T Consensus 254 g~Dvvid~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 254 EVDCGVDAVGFEAHGLGDEANTETP---NGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp CEEEEEECSCTTCBCSGGGTTSBCT---THHHHHHHHHEEEEEEEECCS
T ss_pred CCCEEEECCCCcccccccccccccc---HHHHHHHHHHHhcCCEEEEec
Confidence 69999865543110 001 146888999999999987643
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.43 Score=47.70 Aligned_cols=96 Identities=13% Similarity=0.020 Sum_probs=63.4
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|...++.... .++. ..++.+
T Consensus 187 ~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 187 AKVTPGS--TCAVFGLGGVGFSAIVGCKAAGASRIIG--VGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TCCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEE--ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--ECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 4566776 899999874 6777777765 77 7888 555666677777766432332211 1111 112479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
|+|+-.-.- ...+.+..+.|++| |.+++..
T Consensus 263 Dvvid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 263 DYAVECAGR---------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp SEEEECSCC---------HHHHHHHHHTBCTTTCEEEECC
T ss_pred CEEEECCCC---------HHHHHHHHHHHhcCCCEEEEEc
Confidence 999865543 25788899999999 9988754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.25 Score=48.87 Aligned_cols=97 Identities=15% Similarity=0.048 Sum_probs=60.7
Q ss_pred HhcCCCCCCceEEEECCC--ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCcc
Q 012235 310 ILAIKPGETRIGLDFGVG--TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCG--tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sF 380 (467)
...+++++ +||-+|+| .|..+..+++. |.+|++++. ++..++.+.+.+....+.....++. .....+
T Consensus 139 ~~~~~~g~--~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 139 TLNLQRND--VLLVNACGSAIGHLFAQLSQILNFRLIAVTR--NNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp TSCCCTTC--EEEESSTTSHHHHHHHHHHHHHTCEEEEEES--SSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred hcccCCCC--EEEEeCCccHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCC
Confidence 34567777 89999987 56777777765 899998654 4445566666564323322222111 123479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+|+.+..- ....+..+.|++||.+++...
T Consensus 215 Dvvid~~g~----------~~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 215 DAAIDSIGG----------PDGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp EEEEESSCH----------HHHHHHHHTEEEEEEEEECCC
T ss_pred cEEEECCCC----------hhHHHHHHHhcCCCEEEEEee
Confidence 999876543 123344589999999988643
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.15 Score=51.62 Aligned_cols=80 Identities=14% Similarity=0.036 Sum_probs=56.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHH--cCCccEEEccCCCCc--cC--
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIAL--RGLIPLYVTLNQRLP--FF-- 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~--rg~i~~~~~d~~~Lp--f~-- 376 (467)
.+.+.+.+++++ +++|..+|.|..+..++++ ...|+| +|..+.+++.+.. ...+.+++++...+. ..
T Consensus 48 Evl~~L~i~pgg--iyVD~TlG~GGHS~~iL~~lg~~GrVig--~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~ 123 (347)
T 3tka_A 48 EAVNGLNIRPDG--IYIDGTFGRGGHSRLILSQLGEEGRLLA--IDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAER 123 (347)
T ss_dssp HHHHHTCCCTTC--EEEESCCTTSHHHHHHHTTCCTTCEEEE--EESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHhhCCCCCC--EEEEeCcCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 344566777877 8999999999999999987 347888 6666777777632 123678888877663 11
Q ss_pred --CCccceEEecccc
Q 012235 377 --DNTMDLIHTTGFM 389 (467)
Q Consensus 377 --d~sFDlVis~~~L 389 (467)
.+++|.|+....+
T Consensus 124 g~~~~vDgILfDLGV 138 (347)
T 3tka_A 124 DLIGKIDGILLDLGV 138 (347)
T ss_dssp TCTTCEEEEEEECSC
T ss_pred CCCCcccEEEECCcc
Confidence 1368999976443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.35 Score=48.52 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=64.4
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEcc--CCCCc-----cCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTL--NQRLP-----FFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d--~~~Lp-----f~d~s 379 (467)
...+.+++ +||=+|+|. |.++..+++. |. .|++ ++.++..++.+++.|...++... ...+. ..++.
T Consensus 188 ~~~~~~g~--~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg 263 (378)
T 3uko_A 188 TAKVEPGS--NVAIFGLGTVGLAVAEGAKTAGASRIIG--IDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGG 263 (378)
T ss_dssp TTCCCTTC--CEEEECCSHHHHHHHHHHHHHTCSCEEE--ECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCC
Confidence 34566776 889999874 7777777766 87 7888 55556667777766643333221 11111 12347
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEec
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDRF 420 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~ 420 (467)
+|+|+-...- ...+....+.|++| |.+++...
T Consensus 264 ~D~vid~~g~---------~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 264 VDYSFECIGN---------VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp BSEEEECSCC---------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECCCC---------HHHHHHHHHHhhccCCEEEEEcc
Confidence 9999965543 35788999999997 99887543
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=92.56 E-value=1.6 Score=43.40 Aligned_cols=136 Identities=12% Similarity=0.041 Sum_probs=79.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCccC-CCccceEEeccccccc-----
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLPFF-DNTMDLIHTTGFMDGW----- 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~----- 392 (467)
+++|+.||.|.++..+.+.|..++. .+|+.+.+.+....+.. .. .+|+..+... -..+|+|+....-..+
T Consensus 13 ~~~dLFaG~Gg~~~g~~~aG~~~v~-~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag~ 89 (327)
T 2c7p_A 13 RFIDLFAGLGGFRLALESCGAECVY-SNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSISGK 89 (327)
T ss_dssp EEEEETCTTTHHHHHHHHTTCEEEE-EECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCTTSC
T ss_pred cEEEECCCcCHHHHHHHHCCCeEEE-EEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcchhcc
Confidence 7999999999999999999987653 36777777776665421 22 5676655321 1358999976322111
Q ss_pred ----cchh-hHHHHHHHHHhccCCCcEEEEE-ecccC----CCCHHHHHHHHHHcCceeeEEEEccC-------CCCceE
Q 012235 393 ----LDML-LLDFILFDWDRILRPGGLLWID-RFFCN----KKDLDDYMYMFLQFRYKKHKWAISPK-------SKDEVY 455 (467)
Q Consensus 393 ----~~~~-~l~~~L~el~RvLKPGG~LiI~-~~~~~----~~~~~~~~~~i~~~Gf~~l~W~~~~k-------~~devy 455 (467)
.+.. .+-..+.++.+.++|.- +++- ..... ....+.+.+.++.+||.. .|.+..- .+..+|
T Consensus 90 ~~g~~d~r~~L~~~~~r~i~~~~P~~-~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v-~~~vl~a~~~GvPQ~R~R~~ 167 (327)
T 2c7p_A 90 QKGFEDSRGTLFFDIARIVREKKPKV-VFMENVKNFASHDNGNTLEVVKNTMNELDYSF-HAKVLNALDYGIPQKRERIY 167 (327)
T ss_dssp CCGGGSTTSCHHHHHHHHHHHHCCSE-EEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCC-EEEEEEGGGGTCSBCCEEEE
T ss_pred cCCCcchhhHHHHHHHHHHHhccCcE-EEEeCcHHHHhccccHHHHHHHHHHHhCCCEE-EEEEEEHHHcCCCccceEEE
Confidence 1211 12223344555568863 3442 22211 113447788889999964 4543322 455677
Q ss_pred EEEEe
Q 012235 456 LSALL 460 (467)
Q Consensus 456 l~avl 460 (467)
+.+..
T Consensus 168 iv~~~ 172 (327)
T 2c7p_A 168 MICFR 172 (327)
T ss_dssp EEEEB
T ss_pred EEEEe
Confidence 77754
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.54 E-value=0.46 Score=47.51 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=62.6
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+|. |..+..+++. |. .|++ ++.++..++.+++.|...++.... ..+. ..++.+
T Consensus 187 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 187 AKVTQGS--TCAVFGLGGVGLSVIMGCKAAGAARIIG--VDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp TCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 4566776 899999875 6777777764 77 7888 555666677777666432332211 1111 112479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
|+|+-.-.- ...+.+..+.|++| |.+++..
T Consensus 263 D~vid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 263 DFSFEVIGR---------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp SEEEECSCC---------HHHHHHHHHHBCTTTCEEEECS
T ss_pred cEEEECCCC---------HHHHHHHHHHhhcCCcEEEEec
Confidence 999866543 25688889999999 9988753
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.52 E-value=0.43 Score=47.77 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=62.7
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+|. |..+..+++. |. .|++ ++.++..++.+++.|...++.... ..+. ...+.+
T Consensus 188 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 188 AKVEPGS--TCAVFGLGAVGLAAVMGCHSAGAKRIIA--VDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp TCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 4566676 899999864 6777777764 77 7888 556666777777666432322111 1111 112479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
|+|+-.-.- ...+....+.|++| |.+++..
T Consensus 264 D~vid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 264 DFSLECVGN---------VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp SEEEECSCC---------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCC---------HHHHHHHHHHhhcCCcEEEEEc
Confidence 999865543 25688899999999 9988753
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.48 Score=47.33 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=62.9
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|...++.... ..+. ..++.+
T Consensus 186 ~~~~~g~--~VlV~GaG~vG~~avqla~~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 186 AKLEPGS--VCAVFGLGGVGLAVIMGCKVAGASRIIG--VDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp TCCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEE--ECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 4566776 899999864 6777777765 87 7888 555666677777666433332211 1111 112479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
|+|+-...- ...+.+..+.|+++ |.+++..
T Consensus 262 D~vid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 262 DYSFECIGN---------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp SEEEECSCC---------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCc---------HHHHHHHHHhhccCCcEEEEEe
Confidence 999866543 25688899999999 9988754
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.23 Score=49.74 Aligned_cols=97 Identities=12% Similarity=-0.003 Sum_probs=63.7
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
...+++++ +||-+|+|. |..+..+++. |..|++ ++.++..++.+.+.|...++..+..++. .....+|
T Consensus 184 ~~~~~~g~--~VlV~G~G~vG~~a~qla~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D 259 (363)
T 3uog_A 184 KGHLRAGD--RVVVQGTGGVALFGLQIAKATGAEVIV--TSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGAD 259 (363)
T ss_dssp TTCCCTTC--EEEEESSBHHHHHHHHHHHHTTCEEEE--EESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEE--EecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCce
Confidence 34566777 899999775 6677777665 889888 4556667777777775333332212211 1234799
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+-...- ..+....+.|+|||.+++...
T Consensus 260 ~vid~~g~----------~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 260 HILEIAGG----------AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp EEEEETTS----------SCHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCCh----------HHHHHHHHHhhcCCEEEEEec
Confidence 99865542 246778889999999988643
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=92.06 E-value=2.1 Score=42.76 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=81.2
Q ss_pred eEEEECCCccHHHHHHhhCCC--EEE--EEecCCCHHHHHHHHHcCCccEEEccCCCCcc---CCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV--TIV--STALNLGAPFNEMIALRGLIPLYVTLNQRLPF---FDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~V~--gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf---~d~sFDlVis~~~L~h~ 392 (467)
+++|+-||.|.++..+.+.|. +++ + +|+.+.+.+....+..-.++.+|+..+.. +...+|+++....=..+
T Consensus 12 ~vidLFaG~GG~~~G~~~aG~~~~~v~~a--~e~d~~a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 12 NVIEFFSGIGGLRSSYERSSININATFIP--FDINEIANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp EEEEETCTTTHHHHHHHHSSCCCCEEEEE--ECCCHHHHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCTTC
T ss_pred EEEEECCChhHHHHHHHHcCCCceEEEEE--EECCHHHHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCccCc
Confidence 799999999999999998884 444 5 66667777666554322355677776642 22368999976431122
Q ss_pred -----------cchhhHHHHHHHHHh-cc-----CCCcEEEEEeccc--CCCCHHHHHHHHHHcCceeeEEEEccC----
Q 012235 393 -----------LDMLLLDFILFDWDR-IL-----RPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKHKWAISPK---- 449 (467)
Q Consensus 393 -----------~~~~~l~~~L~el~R-vL-----KPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l~W~~~~k---- 449 (467)
.+. ...++.++.| ++ +|. ++++-.-.. .....+.+.+.++.+||.. .|.+..-
T Consensus 90 s~S~ag~~~~~~d~--r~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~~~~~~~i~~~l~~~GY~v-~~~vl~a~~yG 165 (327)
T 3qv2_A 90 NNSIMSKHKDINDP--RAKSVLHLYRDILPYLINKPK-HIFIENVPLFKESLVFKEIYNILIKNQYYI-KDIICSPIDIG 165 (327)
T ss_dssp SHHHHTTTCTTTCG--GGHHHHHHHHTTGGGCSSCCS-EEEEEECGGGGGSHHHHHHHHHHHHTTCEE-EEEEECGGGGT
T ss_pred ccccCCCCCCCccc--cchhHHHHHHHHHHHhccCCC-EEEEEchhhhcChHHHHHHHHHHHhCCCEE-EEEEEeHHHcC
Confidence 122 1246666666 54 454 334422211 1223457888899999965 4544332
Q ss_pred ---CCCceEEEEE
Q 012235 450 ---SKDEVYLSAL 459 (467)
Q Consensus 450 ---~~devyl~av 459 (467)
.+..+|+.+.
T Consensus 166 vPQ~R~R~fivg~ 178 (327)
T 3qv2_A 166 IPNSRTRYYVMAR 178 (327)
T ss_dssp CSBCCCEEEEEEE
T ss_pred CCccceEEEEEEE
Confidence 4566777765
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.37 Score=47.36 Aligned_cols=97 Identities=16% Similarity=0.041 Sum_probs=62.3
Q ss_pred HHhcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHH-HHcCCccEEEccCCCCc-----cCCCc
Q 012235 309 DILAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMI-ALRGLIPLYVTLNQRLP-----FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a-~~rg~i~~~~~d~~~Lp-----f~d~s 379 (467)
+...+.+++ +||-+|+ |.|..+..+++. |.+|+++ +.++..++.+ .+.+....+.....++. ...+.
T Consensus 143 ~~~~~~~g~--~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 218 (336)
T 4b7c_A 143 DVGQPKNGE--TVVISGAAGAVGSVAGQIARLKGCRVVGI--AGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKG 218 (336)
T ss_dssp HTTCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTC
T ss_pred HhcCCCCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCC
Confidence 445677777 8999998 456677666654 8899884 5556666666 44453222222111111 11356
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+.+..- ..+....+.|++||.+++..
T Consensus 219 ~d~vi~~~g~----------~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 219 IDVFFDNVGG----------EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp EEEEEESSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred ceEEEECCCc----------chHHHHHHHHhhCCEEEEEe
Confidence 9999875543 36788889999999998754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.97 E-value=0.24 Score=49.86 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=60.9
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-CccCCCccceEEecc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-LPFFDNTMDLIHTTG 387 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-Lpf~d~sFDlVis~~ 387 (467)
..+++++ +||-+|+|. |.++..+++. |..|+++ +.++..++.+.+.|...++.....+ ..-..+.+|+|+-..
T Consensus 190 ~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~ 265 (369)
T 1uuf_A 190 WQAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVVAF--TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV 265 (369)
T ss_dssp TTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEE--ESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECC
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECC
Confidence 3567777 899999874 7777777764 8888884 4556666777766643333221111 000015799998654
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.- ...+.+..+.|+|||.+++.
T Consensus 266 g~---------~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 266 AA---------PHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp SS---------CCCHHHHHTTEEEEEEEEEC
T ss_pred CC---------HHHHHHHHHHhccCCEEEEe
Confidence 43 12466788999999998874
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=91.89 E-value=0.25 Score=50.10 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=40.4
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH---cCCccEEEccCCCCc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL---RGLIPLYVTLNQRLP 374 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~---rg~i~~~~~d~~~Lp 374 (467)
.|||||.|.|.++..|+++ +..|+++++| ..++....+ .+.+.++.+|+..+.
T Consensus 61 ~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D--~~l~~~L~~~~~~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 61 KVLDLYPGVGIQSAIFYNKYCPRQYSLLEKR--SSLYKFLNAKFEGSPLQILKRDPYDWS 118 (353)
T ss_dssp EEEEESCTTCHHHHHHHHHHCCSEEEEECCC--HHHHHHHHHHTTTSSCEEECSCTTCHH
T ss_pred EEEEECCCCCHHHHHHHhhCCCCEEEEEecC--HHHHHHHHHhccCCCEEEEECCccchh
Confidence 8999999999999999986 5689985554 556555554 245788999986553
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=3.3 Score=40.39 Aligned_cols=138 Identities=11% Similarity=0.051 Sum_probs=83.0
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC-CCccceEEeccc-----cc---
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF-DNTMDLIHTTGF-----MD--- 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~-d~sFDlVis~~~-----L~--- 390 (467)
+|||+=||.|.++..+.+.|.+++. .+|+.+.+.+..+.+....++.+|+..+... -..+|+++.... ..
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~-a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~~ 80 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIIC-ANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSL 80 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEE-EEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTEE
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEE-EEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCCc
Confidence 6899999999999999988988763 3555566666666655556778887776422 245899986431 11
Q ss_pred -cccchh-hHHHHHHHHHhccCCCcEEEEEe---cccCC--CCHHHHHHHHHHcCceeeEEEEcc-C------CCCceEE
Q 012235 391 -GWLDML-LLDFILFDWDRILRPGGLLWIDR---FFCNK--KDLDDYMYMFLQFRYKKHKWAISP-K------SKDEVYL 456 (467)
Q Consensus 391 -h~~~~~-~l~~~L~el~RvLKPGG~LiI~~---~~~~~--~~~~~~~~~i~~~Gf~~l~W~~~~-k------~~devyl 456 (467)
...+.. .+-..+.++.+.+||.- |++-. +...+ ...+.+.+.++.+||.. .|.+.. . .+..+|+
T Consensus 81 ~g~~d~R~~L~~~~~r~i~~~~Pk~-~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v-~~~vlna~~yGvPQ~R~Rvfi 158 (331)
T 3ubt_Y 81 RGIDDPRGKLFYEYIRILKQKKPIF-FLAENVKGMMAQRHNKAVQEFIQEFDNAGYDV-HIILLNANDYGVAQDRKRVFY 158 (331)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHCCSE-EEEEECCGGGGCTTSHHHHHHHHHHHHHTEEE-EEEEEEGGGTTCSBCCEEEEE
T ss_pred cCCCCchhHHHHHHHHHHhccCCeE-EEeeeecccccccccchhhhhhhhhccCCcEE-EEEecccccCCCCcccceEEE
Confidence 111221 12222334555678963 34422 12222 23447788889999965 454333 2 4556777
Q ss_pred EEEe
Q 012235 457 SALL 460 (467)
Q Consensus 457 ~avl 460 (467)
.++.
T Consensus 159 vg~r 162 (331)
T 3ubt_Y 159 IGFR 162 (331)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7653
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.05 Score=68.00 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=38.6
Q ss_pred eEEEECCCccHHHHHHhhC-C------CEEEEEecCCCHHHHHHHHHcC-CccEEEc--cCCC-CccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-N------VTIVSTALNLGAPFNEMIALRG-LIPLYVT--LNQR-LPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g------~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~--d~~~-Lpf~d~sFDlVis~~~ 388 (467)
+||+||.|+|..+..+.+. + ...+.+ |++....+.++++- ...+... |... .++..++||+|++..+
T Consensus 1243 ~ilEigagtg~~t~~il~~l~~~~~~~~~yt~t--d~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1243 KVVEVLAGDGQLYSRIPALLNTQPVMDLDYTAT--DRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEE--CSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred eEEEECCCccHHHHHHHHhhcccCcccceEEEe--cCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 7999999999765544322 1 133333 44443332222210 0122221 2222 1345678999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+ |-..+ +...+.++.++|||||++++..
T Consensus 1321 l-~~t~~--~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1321 L-ATLGD--PAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp -----------------------CCEEEEEE
T ss_pred c-ccccc--HHHHHHHHHHhcCCCcEEEEEe
Confidence 9 65544 4678999999999999998865
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.81 E-value=0.21 Score=47.92 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=35.1
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR 360 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r 360 (467)
.+++ .|||..||+|+.+....+.|..++| +|+++.+.+.+.+|
T Consensus 211 ~~~~--~vlD~f~GsGtt~~~a~~~gr~~ig--~e~~~~~~~~~~~r 253 (260)
T 1g60_A 211 NPND--LVLDCFMGSGTTAIVAKKLGRNFIG--CDMNAEYVNQANFV 253 (260)
T ss_dssp CTTC--EEEESSCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHH
T ss_pred CCCC--EEEECCCCCCHHHHHHHHcCCeEEE--EeCCHHHHHHHHHH
Confidence 4566 8999999999999999999999999 55666777666554
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=91.80 E-value=0.56 Score=46.93 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=62.5
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|...++.... .++. ..++.+
T Consensus 191 ~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 191 AKVTPGS--TCAVFGLGCVGLSAIIGCKIAGASRIIA--IDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp SCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 3566676 899999874 6777777765 77 7888 555666677777666432322111 1111 112479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
|+|+-.-.- ...+.+..+.|++| |.+++..
T Consensus 267 Dvvid~~G~---------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 267 DYSLDCAGT---------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp SEEEESSCC---------HHHHHHHHHTBCTTTCEEEECC
T ss_pred cEEEECCCC---------HHHHHHHHHHhhcCCCEEEEEC
Confidence 999865543 25788899999999 9988743
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.38 Score=47.16 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=58.9
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccC-CCCc-----cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-QRLP-----FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~~Lp-----f~d~sFD 381 (467)
..+.+++ +||-.|+ |.|..+..++. .|.+|+++ +.++..++.+.+.+....+.... ..+. ...+.+|
T Consensus 141 ~~~~~g~--~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~--~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 141 CGVKGGE--TVLVSAAAGAVGSVVGQIAKLKGCKVVGA--AGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp SCCCSSC--EEEEESTTBHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred hCCCCCC--EEEEecCCCcHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCe
Confidence 3456666 8999998 45666655554 58899884 44566666665545321221111 1110 1124799
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+.+..+.|++||.+++..
T Consensus 217 ~vi~~~g~----------~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 217 CYFDNVGG----------EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEESSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCh----------HHHHHHHHHHhcCCEEEEEe
Confidence 99876653 24778889999999988754
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.4 Score=47.01 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=62.3
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+++++ +||-+|+ |.|..+..+++. |.+|+++ +.++..++.+.+.|....+.....++. .....+|
T Consensus 136 ~~~~~g~--~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 136 YQVKPGE--IILFHAAAGGVGSLACQWAKALGAKLIGT--VSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp SCCCTTC--EEEESSTTSHHHHHHHHHHHHHTCEEEEE--ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred cCCCCCC--EEEEEcCCcHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 3466676 8999983 457777777765 8899884 456666777776664333322222111 1234799
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+.+..- ..+....+.|++||.+++...
T Consensus 212 vvid~~g~----------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 212 VVYDGVGQ----------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp EEEESSCG----------GGHHHHHTTEEEEEEEEECCC
T ss_pred EEEECCCh----------HHHHHHHHHhcCCCEEEEEec
Confidence 99876543 256778899999999988543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.77 Score=45.84 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=63.6
Q ss_pred HHhcCCCCCCceEEEEC--CCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCcc
Q 012235 309 DILAIKPGETRIGLDFG--VGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIG--CGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sF 380 (467)
....+.+++ +||-+| .|.|..+..+++. |.+|+++ +.++..++.+++.|...++..+...+. ...+.+
T Consensus 157 ~~~~~~~g~--~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~--~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~ 232 (362)
T 2c0c_A 157 ELGGLSEGK--KVLVTAAAGGTGQFAMQLSKKAKCHVIGT--CSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGV 232 (362)
T ss_dssp HHTCCCTTC--EEEETTTTBTTHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred HhcCCCCCC--EEEEeCCCcHHHHHHHHHHHhCCCEEEEE--ECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCC
Confidence 344567777 899999 4567777777764 8888884 455666677766664323322211110 113469
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+|+.+..- ..+..+.+.|+++|.+++...
T Consensus 233 D~vid~~g~----------~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 233 DVVYESVGG----------AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EEEEECSCT----------HHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEECCCH----------HHHHHHHHHHhcCCEEEEEeC
Confidence 999876542 367788899999999887543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.98 E-value=0.83 Score=45.03 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=60.9
Q ss_pred cCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--cC--CCccceEEe
Q 012235 312 AIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP--FF--DNTMDLIHT 385 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp--f~--d~sFDlVis 385 (467)
.+.+++ +||-+|+| .|..+..+++. |.+|++ ++.++..++.+.+.+...++.....++. .. .+.+|+|+.
T Consensus 161 ~~~~g~--~VlV~GaG~vG~~~~~~a~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid 236 (339)
T 1rjw_A 161 GAKPGE--WVAIYGIGGLGHVAVQYAKAMGLNVVA--VDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVV 236 (339)
T ss_dssp TCCTTC--EEEEECCSTTHHHHHHHHHHTTCEEEE--ECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEE
Confidence 667776 89999986 46777776654 888888 5566777777766554222211111110 00 046899987
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
...- ...+.+..+.|++||.+++.
T Consensus 237 ~~g~---------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 237 TAVS---------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp SSCC---------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCC---------HHHHHHHHHHhhcCCEEEEe
Confidence 6543 25678889999999998874
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=0.59 Score=46.25 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=61.2
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+ +++ +||-+|+|. |..+..+++. |. +|++ ++.++..++.+.+.|...++.....++. .....+|
T Consensus 164 ~~~-~g~--~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~--~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 164 GPI-SGK--SVLITGAGPLGLLGIAVAKASGAYPVIV--SEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp SCC-TTC--CEEEECCSHHHHHHHHHHHHTTCCSEEE--ECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred cCC-CCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence 345 666 899999863 6667777654 87 8888 5556666777776664223222111111 1123699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+..... ...+.+..+.|+++|.++...
T Consensus 239 ~vid~~g~---------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 239 VFLEFSGA---------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp EEEECSCC---------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCC---------HHHHHHHHHHHhcCCEEEEEc
Confidence 99876543 256788899999999988753
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.64 Score=45.86 Aligned_cols=94 Identities=10% Similarity=0.066 Sum_probs=65.1
Q ss_pred cCCCCCCceEEEECCCc-cHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGVGT-GTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGt-G~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||-+|+|. |..+..+++. +..|++ ++.++..++.+++.|...++.... ++. .....+|+
T Consensus 168 ~~~~g~--~vlv~GaG~vG~~a~qla~~~g~~~Vi~--~~~~~~~~~~~~~lGa~~~i~~~~-~~~~~v~~~t~g~g~d~ 242 (345)
T 3jv7_A 168 LLGPGS--TAVVIGVGGLGHVGIQILRAVSAARVIA--VDLDDDRLALAREVGADAAVKSGA-GAADAIRELTGGQGATA 242 (345)
T ss_dssp GCCTTC--EEEEECCSHHHHHHHHHHHHHCCCEEEE--EESCHHHHHHHHHTTCSEEEECST-THHHHHHHHHGGGCEEE
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHcCCCEEEcCCC-cHHHHHHHHhCCCCCeE
Confidence 566777 899999875 7778888765 678888 556777788887777533333221 111 11237999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+-.-.- ...+....+.|++||.+++..
T Consensus 243 v~d~~G~---------~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 243 VFDFVGA---------QSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEESSCC---------HHHHHHHHHHEEEEEEEEECS
T ss_pred EEECCCC---------HHHHHHHHHHHhcCCEEEEEC
Confidence 9875543 357889999999999998854
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=90.69 E-value=0.27 Score=47.99 Aligned_cols=83 Identities=22% Similarity=0.143 Sum_probs=52.6
Q ss_pred ccEEEccCCC-Cc-cCCCccceEEeccccccccc-----------------hhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 363 IPLYVTLNQR-LP-FFDNTMDLIHTTGFMDGWLD-----------------MLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 363 i~~~~~d~~~-Lp-f~d~sFDlVis~~~L~h~~~-----------------~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+.++++|+.. ++ +++++||+|+++-......+ ...+..++.++.|+|||||.+++..-...
T Consensus 22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~ 101 (297)
T 2zig_A 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVA 101 (297)
T ss_dssp EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEE
T ss_pred CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 5688888665 33 45789999999866521100 01134678899999999999988542110
Q ss_pred ------C----CCH-HHHHHHHHHcCceee---EEE
Q 012235 424 ------K----KDL-DDYMYMFLQFRYKKH---KWA 445 (467)
Q Consensus 424 ------~----~~~-~~~~~~i~~~Gf~~l---~W~ 445 (467)
. -.. ..+..+++..||... -|.
T Consensus 102 ~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~iiW~ 137 (297)
T 2zig_A 102 VARRRFGRHLVFPLHADIQVRCRKLGFDNLNPIIWH 137 (297)
T ss_dssp EECC----EEEECHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cccccCCcccccccHHHHHHHHHHcCCeeeccEEEe
Confidence 0 011 256677888898544 365
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.62 E-value=1.1 Score=45.15 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=66.4
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCC-Cc------cCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-LP------FFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-Lp------f~d~s 379 (467)
...+++++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|. ..+...... +. .....
T Consensus 180 ~~~~~~g~--~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~--~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~v~~~t~g~g 254 (398)
T 1kol_A 180 TAGVGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIV--GDLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPE 254 (398)
T ss_dssp HTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--EESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSC
T ss_pred HcCCCCCC--EEEEECCcHHHHHHHHHHHHCCCCeEEE--EcCCHHHHHHHHHcCC-cEEccCCcchHHHHHHHHhCCCC
Confidence 34677777 899999875 7788888775 77 6777 5566777788877775 333322111 10 12246
Q ss_pred cceEEeccccc---------cccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMD---------GWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~---------h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+-.-.-. |..+. ...+.+..++|++||.+++..
T Consensus 255 ~Dvvid~~G~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 255 VDCAVDAVGFEARGHGHEGAKHEAP---ATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCT---THHHHHHHHHEEEEEEEEECS
T ss_pred CCEEEECCCCcccccccccccccch---HHHHHHHHHHHhcCCEEEEec
Confidence 99999654421 22222 247888999999999988754
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=0.5 Score=46.42 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=60.1
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||-+|+ |.|..+..+++. |.+|+++ +.++..++.+.+.+...++.....++. .....+|+
T Consensus 145 ~~~~g~--~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~ 220 (334)
T 3qwb_A 145 HVKKGD--YVLLFAAAGGVGLILNQLLKMKGAHTIAV--ASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDA 220 (334)
T ss_dssp CCCTTC--EEEESSTTBHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred cCCCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceE
Confidence 456676 8999994 456666666654 8899884 455666777776664333332222211 12346999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+.+..- ..+....+.|++||.+++.
T Consensus 221 vid~~g~----------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 221 SFDSVGK----------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp EEECCGG----------GGHHHHHHHEEEEEEEEEC
T ss_pred EEECCCh----------HHHHHHHHHhccCCEEEEE
Confidence 9876543 2567788899999998885
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.77 Score=45.38 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=60.9
Q ss_pred hcCCCCCCceEEEECCC--ccHHHHHHhh-C-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCC-Ccc
Q 012235 311 LAIKPGETRIGLDFGVG--TGTFAARMRE-Q-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFD-NTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG--tG~~a~~La~-~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d-~sF 380 (467)
..+.+++ +||-+|+| .|..+..+++ . |.+|+++ +.++..++.+++.+...++....... .... +.+
T Consensus 166 ~~~~~g~--~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 1jvb_A 166 ASLDPTK--TLLVVGAGGGLGTMAVQIAKAVSGATIIGV--DVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV 241 (347)
T ss_dssp TTCCTTC--EEEEETTTSHHHHHHHHHHHHHTCCEEEEE--ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred cCCCCCC--EEEEECCCccHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCc
Confidence 4566776 89999998 4455555554 4 8888884 45566666666655322222211111 1112 579
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+|+.+..- ...+.+..++|+|||.+++..
T Consensus 242 d~vi~~~g~---------~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 242 DAVIDLNNS---------EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp EEEEESCCC---------HHHHTTGGGGEEEEEEEEECC
T ss_pred eEEEECCCC---------HHHHHHHHHHHhcCCEEEEEC
Confidence 999876654 246788899999999988754
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.37 E-value=0.25 Score=48.18 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=58.6
Q ss_pred HHhcCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEec
Q 012235 309 DILAIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
....+++++ +||=+|+| .|.++..+++. |.+|++++ ++...+.+++.|.-.++ .|.+.+ .+.+|+|+-.
T Consensus 136 ~~~~~~~g~--~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~---~~~~~~~~~~lGa~~v~-~d~~~v---~~g~Dvv~d~ 206 (315)
T 3goh_A 136 EKIPLTKQR--EVLIVGFGAVNNLLTQMLNNAGYVVDLVS---ASLSQALAAKRGVRHLY-REPSQV---TQKYFAIFDA 206 (315)
T ss_dssp TTSCCCSCC--EEEEECCSHHHHHHHHHHHHHTCEEEEEC---SSCCHHHHHHHTEEEEE-SSGGGC---CSCEEEEECC
T ss_pred hhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEEEE---ChhhHHHHHHcCCCEEE-cCHHHh---CCCccEEEEC
Confidence 334566776 89999986 37777778765 88999865 45556667666642333 232222 5679999864
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
-.- ..+.+..+.|+|||.++..
T Consensus 207 ~g~----------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 207 VNS----------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp -----------------TTGGGEEEEEEEEEE
T ss_pred CCc----------hhHHHHHHHhcCCCEEEEE
Confidence 432 1235678999999998875
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.35 E-value=0.66 Score=45.86 Aligned_cols=95 Identities=12% Similarity=0.059 Sum_probs=59.6
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEcc-CCCCc-----cCCCccce
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTL-NQRLP-----FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d-~~~Lp-----f~d~sFDl 382 (467)
.+.+++ +||-+|+ |.|..+..++. .|..|++++.+ +...+.+.+.+....+... ...+. ..++.+|+
T Consensus 166 ~~~~g~--~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~--~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~ 241 (347)
T 2hcy_A 166 NLMAGH--WVAISGAAGGLGSLAVQYAKAMGYRVLGIDGG--EGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHG 241 (347)
T ss_dssp TCCTTC--EEEEETTTSHHHHHHHHHHHHTTCEEEEEECS--TTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEE
T ss_pred CCCCCC--EEEEECCCchHHHHHHHHHHHCCCcEEEEcCC--HHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCE
Confidence 566666 8999998 45666666665 58899885544 4445556555532222111 11111 11126899
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+.+... ...+..+.+.|++||.+++..
T Consensus 242 vi~~~g~---------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 242 VINVSVS---------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp EEECSSC---------HHHHHHHTTSEEEEEEEEECC
T ss_pred EEECCCc---------HHHHHHHHHHHhcCCEEEEEe
Confidence 9877653 257888999999999988754
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=90.01 E-value=0.52 Score=46.65 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=60.2
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+++++ +||-+|+ |.|..+..+++. |.+|++++ .++..++.+.+.+...++... .++. .....+|
T Consensus 155 ~~~~~g~--~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~--~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 155 GQLRAGE--TVLVLGAAGGIGTAAIQIAKGMGAKVIAVV--NRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp SCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEEE--SSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred cCCCCCC--EEEEECCCCHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCce
Confidence 4566676 8999997 457777777765 88998854 445556666666643333222 2221 1233699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+....+.|++||.+++..
T Consensus 230 vvid~~g~----------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 230 MVVDPIGG----------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEEESCC------------CHHHHHHTEEEEEEEEEC-
T ss_pred EEEECCch----------hHHHHHHHhhcCCCEEEEEE
Confidence 99876543 24677889999999998753
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=89.71 E-value=1.7 Score=43.03 Aligned_cols=99 Identities=10% Similarity=0.020 Sum_probs=63.3
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCC--ccEEEccC--CCCc------c
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGL--IPLYVTLN--QRLP------F 375 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~--i~~~~~d~--~~Lp------f 375 (467)
....+.+++ +||=+|+|. |.++..+++. |.. |++ .+.++..++.+++... +.+...+. .++. .
T Consensus 173 ~~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 173 QRAGVRLGD--PVLICGAGPIGLITMLCAKAAGACPLVI--TDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESF 248 (363)
T ss_dssp HHHTCCTTC--CEEEECCSHHHHHHHHHHHHTTCCSEEE--EESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHT
T ss_pred HHcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHh
Confidence 455677777 888899865 7777777765 876 887 4556666666665431 11111100 1110 1
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
....+|+|+-.-.- ...+....++|++||.+++...
T Consensus 249 ~g~g~Dvvid~~g~---------~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 249 GGIEPAVALECTGV---------ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp SSCCCSEEEECSCC---------HHHHHHHHHHSCTTCEEEECCC
T ss_pred CCCCCCEEEECCCC---------hHHHHHHHHHhcCCCEEEEEcc
Confidence 24579999976543 2578889999999999988543
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=89.65 E-value=5.3 Score=39.84 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=80.8
Q ss_pred eEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCcc---CCCccceEEecccccc--
Q 012235 320 IGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPF---FDNTMDLIHTTGFMDG-- 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf---~d~sFDlVis~~~L~h-- 391 (467)
+++|+-||.|.++..+.+.|. +++ ..+|+.+.+.+....+. ...++.+|+..+.. +...+|+++....=..
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~~~~v-~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLDGEIV-AAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCSEEEE-EEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred EEEEECcCccHHHHHHHHcCCCceEE-EEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 689999999999999988885 433 23677777777766653 35577788776642 2336899996532111
Q ss_pred -------ccchhhHHHHHHHHHhc---cC-CCcEEEEEeccc--CCCCHHHHHHHHHHcCceeeEEEEccC------CCC
Q 012235 392 -------WLDMLLLDFILFDWDRI---LR-PGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKHKWAISPK------SKD 452 (467)
Q Consensus 392 -------~~~~~~l~~~L~el~Rv---LK-PGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l~W~~~~k------~~d 452 (467)
..+.. ..++.++.|+ ++ |. ++++-.-.. .....+.+.+.++.+||..-....... .+.
T Consensus 84 ~ag~~~~~~d~r--~~L~~~~~r~i~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~ 160 (333)
T 4h0n_A 84 RNGKYLDDNDPR--TNSFLYLIGILDQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRL 160 (333)
T ss_dssp ETTEECCTTCTT--SCCHHHHHHHGGGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCC
T ss_pred hhhhccCCcCcc--cccHHHHHHHHHHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccce
Confidence 11111 1234444444 44 64 333322211 122345788889999997643333332 456
Q ss_pred ceEEEEEe
Q 012235 453 EVYLSALL 460 (467)
Q Consensus 453 evyl~avl 460 (467)
.+|+.+..
T Consensus 161 R~fiva~r 168 (333)
T 4h0n_A 161 RYYCTARR 168 (333)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 67777754
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.33 E-value=0.87 Score=45.31 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=58.9
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+++++ +||-.|+ |.|..+..+++ .|..|+++ +.++..++.+.+.+....+......+. ...+.+|
T Consensus 166 ~~~~~g~--~vlV~GasggiG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D 241 (351)
T 1yb5_A 166 ACVKAGE--SVLVHGASGGVGLAACQIARAYGLKILGT--AGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 241 (351)
T ss_dssp SCCCTTC--EEEEETCSSHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred hCCCCcC--EEEEECCCChHHHHHHHHHHHCCCEEEEE--eCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcE
Confidence 3566666 8999997 45666666655 48888884 455666666665553222222111110 1123699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+.+..++|++||.+++..
T Consensus 242 ~vi~~~G~----------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 242 IIIEMLAN----------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEEESCHH----------HHHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCh----------HHHHHHHHhccCCCEEEEEe
Confidence 99876543 25677889999999988743
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.12 E-value=1.6 Score=44.23 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=59.4
Q ss_pred cCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||=+|+|. |.++..+++. |. .|++ ++.++..++.+++.|...++.....++. .....+|+
T Consensus 210 ~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~ 285 (404)
T 3ip1_A 210 GIRPGD--NVVILGGGPIGLAAVAILKHAGASKVIL--SEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKL 285 (404)
T ss_dssp CCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSE
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCE
Confidence 355666 888899864 6777777765 87 7888 6667777788877774333322222211 12346999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+-.-.-. ......++.-+.+++++||.+++..
T Consensus 286 vid~~g~~----~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 286 FLEATGVP----QLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp EEECSSCH----HHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred EEECCCCc----HHHHHHHHHHHHhccCCCcEEEEeC
Confidence 99654431 0001223333335559999998854
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.11 E-value=0.8 Score=45.17 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=59.5
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||-+|+ |.|..+..+++ .|.+|+++ +.++..++.+.+.+...++......+. ...+.+|+
T Consensus 163 ~~~~g~--~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~--~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~ 238 (343)
T 2eih_A 163 GVRPGD--DVLVMAAGSGVSVAAIQIAKLFGARVIAT--AGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADK 238 (343)
T ss_dssp CCCTTC--EEEECSTTSTTHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEE
T ss_pred CCCCCC--EEEEECCCchHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceE
Confidence 455666 8999998 56777777765 48888884 455666666665553222221111110 11247999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+.+..- ..+..+.+.|+++|.+++..
T Consensus 239 vi~~~g~----------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 239 VVDHTGA----------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp EEESSCS----------SSHHHHHHHEEEEEEEEESS
T ss_pred EEECCCH----------HHHHHHHHhhccCCEEEEEe
Confidence 9876542 24677788999999988743
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.01 E-value=0.72 Score=46.36 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=62.6
Q ss_pred hc-CCCCCCceEEEECCC-ccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEcc---CCCC----c--cCC
Q 012235 311 LA-IKPGETRIGLDFGVG-TGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVTL---NQRL----P--FFD 377 (467)
Q Consensus 311 L~-l~~g~~r~VLDIGCG-tG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d---~~~L----p--f~d 377 (467)
.. +.+++ +||-+|+| .|..+..+++. | .+|++ ++.++..++.+++.|.-.++... ..++ . ...
T Consensus 190 ~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g 265 (380)
T 1vj0_A 190 YPESFAGK--TVVIQGAGPLGLFGVVIARSLGAENVIV--IAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHG 265 (380)
T ss_dssp CSSCCBTC--EEEEECCSHHHHHHHHHHHHTTBSEEEE--EESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTT
T ss_pred cCCCCCCC--EEEEECcCHHHHHHHHHHHHcCCceEEE--EcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCC
Confidence 45 66676 89999966 36777777765 7 58988 55566777777776643333222 1111 0 112
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
..+|+|+-...- ...+.+..+.|++||.+++...
T Consensus 266 ~g~Dvvid~~g~---------~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 266 RGADFILEATGD---------SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp SCEEEEEECSSC---------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CCCcEEEECCCC---------HHHHHHHHHHHhcCCEEEEEec
Confidence 369999866543 1367888899999999887543
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=1.2 Score=44.19 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=60.9
Q ss_pred HhcCCCC------CCceEEEECCCc-cHHH-HHHh-hC-CCE-EEEEecCCC-HHHHHHHHHcCCccEEEccCCCCc---
Q 012235 310 ILAIKPG------ETRIGLDFGVGT-GTFA-ARMR-EQ-NVT-IVSTALNLG-APFNEMIALRGLIPLYVTLNQRLP--- 374 (467)
Q Consensus 310 lL~l~~g------~~r~VLDIGCGt-G~~a-~~La-~~-g~~-V~gvdiDiS-~~~l~~a~~rg~i~~~~~d~~~Lp--- 374 (467)
...+.++ + +||-+|+|. |.++ ..++ +. |.. |++++.+.. ...++.+.+.|. ..+.....++.
T Consensus 161 ~~~~~~g~~~~~~~--~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa-~~v~~~~~~~~~i~ 237 (357)
T 2b5w_A 161 HAYASRSAFDWDPS--SAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDA-TYVDSRQTPVEDVP 237 (357)
T ss_dssp HHHHTTTTSCCCCC--EEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTC-EEEETTTSCGGGHH
T ss_pred hcCCCCCcccCCCC--EEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCC-cccCCCccCHHHHH
Confidence 3456666 6 899999753 6777 7777 54 876 888655432 014566666664 22221111110
Q ss_pred -cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 375 -FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 375 -f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
. .+.+|+|+-...- ...+.+..++|++||.+++...
T Consensus 238 ~~-~gg~Dvvid~~g~---------~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 238 DV-YEQMDFIYEATGF---------PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp HH-SCCEEEEEECSCC---------HHHHHHHHHHEEEEEEEEECCC
T ss_pred Hh-CCCCCEEEECCCC---------hHHHHHHHHHHhcCCEEEEEeC
Confidence 1 2378999865543 2468888999999999887543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.93 E-value=0.97 Score=44.42 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=60.0
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHH-HcCCccEEEcc-CCCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIA-LRGLIPLYVTL-NQRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~-~rg~i~~~~~d-~~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+ |.|..+..++. .|.+|+++ +.++..++.+. +.|....+... ...+. ...+.+
T Consensus 151 ~~~~~g~--~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~--~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 151 CSPKEGE--TVYVSAASGAVGQLVGQLAKMMGCYVVGS--AGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp SCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred hCCCCCC--EEEEECCCcHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCC
Confidence 4566676 8999997 46677766665 48888884 45566666665 34432222111 11111 112469
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+|+.+..- ..+....+.|++||.+++..
T Consensus 227 d~vi~~~g~----------~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 227 DIYFENVGG----------KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEEEESSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred cEEEECCCH----------HHHHHHHHHHhcCCEEEEEc
Confidence 999876543 36788899999999988753
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.89 E-value=0.89 Score=44.86 Aligned_cols=94 Identities=11% Similarity=0.132 Sum_probs=61.8
Q ss_pred cCCCCCCceEEEECCCc-cHHHHHHhh-C--CCEEEEEecCCCHHHHHHHHHcCCccEEEccC-CCC--ccC-CCccceE
Q 012235 312 AIKPGETRIGLDFGVGT-GTFAARMRE-Q--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-QRL--PFF-DNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGt-G~~a~~La~-~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~~L--pf~-d~sFDlV 383 (467)
.+ +++ +||-+|+|. |.++..+++ . |..|++ ++.++..++.+++.|...++.... .+. ... ...+|+|
T Consensus 168 ~~-~g~--~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~v 242 (344)
T 2h6e_A 168 KF-AEP--VVIVNGIGGLAVYTIQILKALMKNITIVG--ISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIA 242 (344)
T ss_dssp TC-SSC--EEEEECCSHHHHHHHHHHHHHCTTCEEEE--ECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEE
T ss_pred CC-CCC--EEEEECCCHHHHHHHHHHHHhcCCCEEEE--EeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEE
Confidence 56 776 899999864 666767665 4 788888 566677777777766422322111 110 011 2379999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+-.-.- ...+....++|+|||.+++..
T Consensus 243 id~~g~---------~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 243 IDLVGT---------EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp EESSCC---------HHHHHHHHHHEEEEEEEEECC
T ss_pred EECCCC---------hHHHHHHHHHhhcCCEEEEeC
Confidence 976554 247888899999999988753
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.34 E-value=0.92 Score=44.29 Aligned_cols=95 Identities=16% Similarity=0.020 Sum_probs=58.5
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+.+++ +||-.|+ |.|..+..++. .|.+|++++ .++..++.+.+.+....+......+. ...+.+|
T Consensus 136 ~~~~~g~--~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 136 YEIKPDE--QFLFHAAAGGVGLIACQWAKALGAKLIGTV--GTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp SCCCTTC--EEEESSTTBHHHHHHHHHHHHHTCEEEEEE--SSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred hCCCCCC--EEEEECCCCHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCce
Confidence 3456666 8999994 45666666555 488998854 45555666665553222221111110 1134699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+....+.|++||.+++..
T Consensus 212 ~vi~~~g~----------~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 212 VVYDSVGR----------DTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp EEEECSCG----------GGHHHHHHTEEEEEEEEECC
T ss_pred EEEECCch----------HHHHHHHHHhcCCCEEEEEe
Confidence 99876542 35778889999999988754
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=2.9 Score=40.95 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=61.1
Q ss_pred HhcCCCCCCceEEEECCCcc-HHHHHHhh-C-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCcc
Q 012235 310 ILAIKPGETRIGLDFGVGTG-TFAARMRE-Q-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG-~~a~~La~-~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sF 380 (467)
...+++++ +||=+|+|.+ .++..+++ . +.+|++ ++.++..++.+.+.+...++.....++. .....+
T Consensus 158 ~~~~~~g~--~VlV~GaG~~g~~a~~~a~~~~g~~Vi~--~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~ 233 (348)
T 4eez_A 158 VSGVKPGD--WQVIFGAGGLGNLAIQYAKNVFGAKVIA--VDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGV 233 (348)
T ss_dssp HHTCCTTC--EEEEECCSHHHHHHHHHHHHTSCCEEEE--EESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCE
T ss_pred ccCCCCCC--EEEEEcCCCccHHHHHHHHHhCCCEEEE--EECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCc
Confidence 44567777 8899999864 45555554 3 788988 5556666777777775333332222111 123346
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|.++....- ...+....+.|+++|.+++..
T Consensus 234 d~~~~~~~~---------~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 234 QSAIVCAVA---------RIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEEECCSC---------HHHHHHHHHTEEEEEEEEECC
T ss_pred eEEEEeccC---------cchhheeheeecCCceEEEEe
Confidence 666654333 357888999999999988753
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.83 E-value=1.9 Score=41.97 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=61.0
Q ss_pred HHhcCCCCCCceEEEEC-CC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-CccCCCccceEE
Q 012235 309 DILAIKPGETRIGLDFG-VG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-LPFFDNTMDLIH 384 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIG-CG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-Lpf~d~sFDlVi 384 (467)
....+.+++ +||=+| +| .|..+..+++. |.+|++++ +....+.+.+.|.-.++.....+ +.-.-+.+|+|+
T Consensus 146 ~~~~~~~g~--~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~---~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~ 220 (321)
T 3tqh_A 146 NQAEVKQGD--VVLIHAGAGGVGHLAIQLAKQKGTTVITTA---SKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVI 220 (321)
T ss_dssp HHTTCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEEE---CHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEE
T ss_pred HhcCCCCCC--EEEEEcCCcHHHHHHHHHHHHcCCEEEEEe---ccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEE
Confidence 455677787 889886 44 57777777765 88888854 34446667666643333322222 211125689988
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
-.-.- ..+.+..++|++||.++..
T Consensus 221 d~~g~----------~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 221 DLVGG----------DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp ESSCH----------HHHHHHGGGEEEEEEEEEC
T ss_pred ECCCc----------HHHHHHHHhccCCCEEEEe
Confidence 65443 2347889999999998874
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.72 E-value=0.6 Score=46.27 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=52.9
Q ss_pred ccEEEccCCC-Cc-cCCCccceEEeccccccc-----cc------hhhHHHHHHHHHhccCCCcEEEEEeccc--CC---
Q 012235 363 IPLYVTLNQR-LP-FFDNTMDLIHTTGFMDGW-----LD------MLLLDFILFDWDRILRPGGLLWIDRFFC--NK--- 424 (467)
Q Consensus 363 i~~~~~d~~~-Lp-f~d~sFDlVis~~~L~h~-----~~------~~~l~~~L~el~RvLKPGG~LiI~~~~~--~~--- 424 (467)
..++++|+.. +. +++++||+|++.-....- .+ ...+...+.++.|+|||||.+++..-.. ..
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~ 94 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPA 94 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEE
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcc
Confidence 4577787543 33 457899999998654211 00 0125678999999999999998854321 11
Q ss_pred ---CCHHHHHHHHHHcCceee---EEEE
Q 012235 425 ---KDLDDYMYMFLQFRYKKH---KWAI 446 (467)
Q Consensus 425 ---~~~~~~~~~i~~~Gf~~l---~W~~ 446 (467)
.....+.++++..||... -|..
T Consensus 95 ~~~~~~~~i~~~~~~~Gf~~~~~iiW~k 122 (323)
T 1boo_A 95 RSIYNFRVLIRMIDEVGFFLAEDFYWFN 122 (323)
T ss_dssp ECCHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cccchHHHHHHHHHhCCCEEEEEEEEec
Confidence 012345566788898543 4754
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.69 E-value=1.6 Score=43.53 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCCCceEEEEC-CC-ccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccceEEe
Q 012235 315 PGETRIGLDFG-VG-TGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDLIHT 385 (467)
Q Consensus 315 ~g~~r~VLDIG-CG-tG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDlVis 385 (467)
+++ +||=+| +| .|.++..+++. |.+|++ ++.++..++.+.+.|.-.++.. ...+ ....+.+|+|+-
T Consensus 171 ~g~--~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~--~~~~~~~~~~~~~lGad~vi~~-~~~~~~~v~~~~~~g~Dvvid 245 (363)
T 4dvj_A 171 AAP--AILIVGGAGGVGSIAVQIARQRTDLTVIA--TASRPETQEWVKSLGAHHVIDH-SKPLAAEVAALGLGAPAFVFS 245 (363)
T ss_dssp SEE--EEEEESTTSHHHHHHHHHHHHHCCSEEEE--ECSSHHHHHHHHHTTCSEEECT-TSCHHHHHHTTCSCCEEEEEE
T ss_pred CCC--EEEEECCCCHHHHHHHHHHHHhcCCEEEE--EeCCHHHHHHHHHcCCCEEEeC-CCCHHHHHHHhcCCCceEEEE
Confidence 454 889888 44 57888888874 788988 5566667777777664222221 1111 112457999886
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
...- ...+.+..++|++||.+++.
T Consensus 246 ~~g~---------~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 246 TTHT---------DKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp CSCH---------HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCc---------hhhHHHHHHHhcCCCEEEEE
Confidence 5443 35788899999999999875
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=87.63 E-value=2.6 Score=41.72 Aligned_cols=100 Identities=11% Similarity=0.011 Sum_probs=64.7
Q ss_pred CceEEEECCCccHHHHHHhh-CCCEEEEEecCCCHHHHHH----HHH-----cCCccEEEccCCCCc---------cCCC
Q 012235 318 TRIGLDFGVGTGTFAARMRE-QNVTIVSTALNLGAPFNEM----IAL-----RGLIPLYVTLNQRLP---------FFDN 378 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~-~g~~V~gvdiDiS~~~l~~----a~~-----rg~i~~~~~d~~~Lp---------f~d~ 378 (467)
++.|+++|||.=+.+.++.. .+..++. +|. +..++. +.+ .+...++.+|+.+ . +...
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~e--vD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYE--IDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPS 178 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEE--EEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTT
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEE--cCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCC
Confidence 45799999999999888873 3566666 553 333322 221 1224566677654 2 1112
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.-=++++-.++ ++.+++....++..+...+.||+++++.....
T Consensus 179 ~Pt~~i~Egvl-~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 179 ARTAWLAEGLL-MYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp SCEEEEECSCG-GGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCEEEEEechH-hhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 23355566666 67666677889999999999999988876543
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=87.61 E-value=1.4 Score=43.51 Aligned_cols=95 Identities=13% Similarity=0.021 Sum_probs=60.2
Q ss_pred cEE-EccCCCCccCCCccceEEecccc----cccc---ch-hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHH
Q 012235 364 PLY-VTLNQRLPFFDNTMDLIHTTGFM----DGWL---DM-LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMF 434 (467)
Q Consensus 364 ~~~-~~d~~~Lpf~d~sFDlVis~~~L----~h~~---~~-~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i 434 (467)
.+. ..|... |-..+.+|+|++..+. +|+. +. ..+.-++....++|+|||.|++-.|...+...+.++..+
T Consensus 191 t~~~~lDfg~-p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~L 269 (320)
T 2hwk_A 191 TFRARLDLGI-PGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAI 269 (320)
T ss_dssp SEECCGGGCS-CTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHH
T ss_pred eeecccccCC-ccccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHH
Confidence 344 444433 3223679999997654 2322 21 112235677889999999999988766543445788888
Q ss_pred HHcCceeeEEEEccC--CCCceEEEEEe
Q 012235 435 LQFRYKKHKWAISPK--SKDEVYLSALL 460 (467)
Q Consensus 435 ~~~Gf~~l~W~~~~k--~~devyl~avl 460 (467)
++. |+.++-...+- .+.|+|+.+.-
T Consensus 270 aR~-F~~Vr~vKP~ASR~StEvf~La~g 296 (320)
T 2hwk_A 270 ARQ-FKFSRVCKPKSSLEETEVLFVFIG 296 (320)
T ss_dssp HTT-EEEEEEECCTTCCSTTCEEEEEEE
T ss_pred HHh-cceeeeeCCCCccccceEEEEEEe
Confidence 877 88876543322 46788887754
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=87.46 E-value=1.4 Score=43.29 Aligned_cols=115 Identities=12% Similarity=-0.001 Sum_probs=77.5
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCC-Cc---cCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQR-LP---FFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~-Lp---f~d~sFDlVis~~~L~h 391 (467)
.+||+=+|+|.++..+.+.+..++. +|..+...+.++++ ..+.++..|... +. -+...||+|+..-...
T Consensus 94 ~~LDlfaGSGaLgiEaLS~~d~~vf--vE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe- 170 (283)
T 2oo3_A 94 STLSYYPGSPYFAINQLRSQDRLYL--CELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYE- 170 (283)
T ss_dssp SSCCEEECHHHHHHHHSCTTSEEEE--ECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCC-
T ss_pred CceeEeCCcHHHHHHHcCCCCeEEE--EeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCC-
Confidence 5799999999999999998877887 66666666666543 236777777433 22 2234699999988773
Q ss_pred ccchhhHHHHHHHHHh--ccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 392 WLDMLLLDFILFDWDR--ILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 392 ~~~~~~l~~~L~el~R--vLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
..+ ..+.++..+.+ .+.|+|.+++=-+.-.+...+.+.+.+++.|.
T Consensus 171 ~k~--~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~ 218 (283)
T 2oo3_A 171 RKE--EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS 218 (283)
T ss_dssp STT--HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred CCc--HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence 211 23455655554 45699998885454455455567777776666
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=87.23 E-value=1.3 Score=45.65 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=61.5
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------------
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------------- 374 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------------- 374 (467)
.+++++ +||=+|+ |.|.++..+++. |..+++++ .++..++.+++.|...++.....++.
T Consensus 225 ~~~~g~--~VlV~GasG~vG~~avqlak~~Ga~vi~~~--~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~ 300 (456)
T 3krt_A 225 GMKQGD--NVLIWGASGGLGSYATQFALAGGANPICVV--SSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWK 300 (456)
T ss_dssp CCCTTC--EEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHH
T ss_pred CCCCCC--EEEEECCCCHHHHHHHHHHHHcCCeEEEEE--CCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHH
Confidence 456676 8999987 457777777765 88888854 46777777777675333332221110
Q ss_pred ---------cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 375 ---------FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 375 ---------f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.....+|+|+-.-.- ..+....++|++||.+++.
T Consensus 301 ~~~~~i~~~t~g~g~Dvvid~~G~----------~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 301 RFGKRIRELTGGEDIDIVFEHPGR----------ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHTSCCEEEEEECSCH----------HHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHhCCCCCcEEEEcCCc----------hhHHHHHHHhhCCcEEEEE
Confidence 112479998865432 4677888999999999874
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=87.14 E-value=0.68 Score=46.06 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=59.0
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCC-CCc--cCCCccceEEe
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ-RLP--FFDNTMDLIHT 385 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~-~Lp--f~d~sFDlVis 385 (467)
..+.+++ +||-+|+|. |.++..+++. |..|++++. ++..++.+++.|...++..... ++. .. +.+|+|+-
T Consensus 175 ~~~~~g~--~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~--~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~-~~~D~vid 249 (360)
T 1piw_A 175 NGCGPGK--KVGIVGLGGIGSMGTLISKAMGAETYVISR--SSRKREDAMKMGADHYIATLEEGDWGEKYF-DTFDLIVV 249 (360)
T ss_dssp TTCSTTC--EEEEECCSHHHHHHHHHHHHHTCEEEEEES--SSTTHHHHHHHTCSEEEEGGGTSCHHHHSC-SCEEEEEE
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEEcC--CHHHHHHHHHcCCCEEEcCcCchHHHHHhh-cCCCEEEE
Confidence 4667777 899999863 6777777765 888888554 4445566666664333322211 110 11 47999986
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
...-. .. ..+.+..++|++||.++..
T Consensus 250 ~~g~~---~~----~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 250 CASSL---TD----IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CCSCS---TT----CCTTTGGGGEEEEEEEEEC
T ss_pred CCCCC---cH----HHHHHHHHHhcCCCEEEEe
Confidence 54320 00 2355667899999998764
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=86.81 E-value=0.49 Score=45.79 Aligned_cols=91 Identities=16% Similarity=0.028 Sum_probs=56.7
Q ss_pred CCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccC-CCCccCCCccceEEeccc
Q 012235 313 IKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-QRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 313 l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~~Lpf~d~sFDlVis~~~ 388 (467)
+++++ +||-+|+ |.|..+..+++. |.+|++++. ++..++.+.+.|...++.... .++.-.-+.+|+|+. ..
T Consensus 123 ~~~g~--~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g 197 (302)
T 1iz0_A 123 ARPGE--KVLVQAAAGALGTAAVQVARAMGLRVLAAAS--RPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VR 197 (302)
T ss_dssp CCTTC--EEEESSTTBHHHHHHHHHHHHTTCEEEEEES--SGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CS
T ss_pred CCCCC--EEEEECCCcHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CC
Confidence 66676 8999997 456777777654 889988554 455556666555322222111 111100156899987 33
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
- ..+....+.|+++|.++..
T Consensus 198 ~----------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 198 G----------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp C----------TTHHHHHTTEEEEEEEEEC
T ss_pred H----------HHHHHHHHhhccCCEEEEE
Confidence 2 2467888999999998874
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.72 E-value=1 Score=44.64 Aligned_cols=95 Identities=17% Similarity=0.004 Sum_probs=60.4
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccce
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDl 382 (467)
..+++++ +||-+|+ |.|..+..+++. |.+|++ .+.++..++.+.+.+....+.....++. ...+.+|+
T Consensus 163 ~~~~~g~--~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 163 AGLTEGE--SVLIHGGTSGIGTTAIQLARAFGAEVYA--TAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp TCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEE--EESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred cCCCCCC--EEEEEcCCCHHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceE
Confidence 4466676 8998853 356666666654 899888 4555666777776664333322222111 11357999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+.+..- ..+....+.|++||.+++..
T Consensus 239 vid~~g~----------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 239 ILDMIGA----------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEESCCG----------GGHHHHHHTEEEEEEEEECC
T ss_pred EEECCCH----------HHHHHHHHHhccCCEEEEEE
Confidence 9876553 24677788999999988753
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.70 E-value=4.8 Score=39.30 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=63.9
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEE-EEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCc
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTI-VSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V-~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~s 379 (467)
......+++ +||=.|+|. |.++..+++. |..+ ++ ++.++..++.+++.|....+.......+ ...+.
T Consensus 154 ~~~~~~~g~--~VlV~GaG~vG~~aiq~ak~~G~~~vi~--~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g 229 (346)
T 4a2c_A 154 HLAQGCENK--NVIIIGAGTIGLLAIQCAVALGAKSVTA--IDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRF 229 (346)
T ss_dssp HHTTCCTTS--EEEEECCSHHHHHHHHHHHHTTCSEEEE--EESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCS
T ss_pred HHhccCCCC--EEEEECCCCcchHHHHHHHHcCCcEEEE--EechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCC
Confidence 444566776 889899875 4566666655 6554 55 5667777888888775444443322211 12345
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+|+-...- ...+....++|++||.+++...
T Consensus 230 ~d~v~d~~G~---------~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 230 NQLILETAGV---------PQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp SEEEEECSCS---------HHHHHHHHHHCCTTCEEEECCC
T ss_pred cccccccccc---------cchhhhhhheecCCeEEEEEec
Confidence 7887765443 3578888999999999988543
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=86.35 E-value=1.5 Score=42.82 Aligned_cols=95 Identities=18% Similarity=0.081 Sum_probs=58.4
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+.+++ +||-.|+ |.|..+..++. .|..|++++ .++..++.+.+.+....+......+. .....+|
T Consensus 141 ~~~~~g~--~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~--~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 141 HKVKPGD--YVLIHAAAGGMGHIMVPWARHLGATVIGTV--STEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp SCCCTTC--EEEETTTTSTTHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred hCCCCCC--EEEEECCccHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCe
Confidence 3456666 8999995 56766666654 488988854 45555666655553222221111110 1124699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+....+.|++||.++...
T Consensus 217 ~vi~~~g~----------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 217 VVYDSIGK----------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp EEEECSCT----------TTHHHHHHTEEEEEEEEECC
T ss_pred EEEECCcH----------HHHHHHHHhhccCCEEEEEe
Confidence 99876542 24677889999999988754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=1.3 Score=43.86 Aligned_cols=96 Identities=14% Similarity=-0.018 Sum_probs=58.4
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+.+++ +||-.|+ |.|..+..++. .|..|+++ +.++..++.+.+.+....+......+. ...+.+|
T Consensus 158 ~~~~~g~--~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d 233 (354)
T 2j8z_A 158 GNVQAGD--YVLIHAGLSGVGTAAIQLTRMAGAIPLVT--AGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVN 233 (354)
T ss_dssp SCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred cCCCCCC--EEEEECCccHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCce
Confidence 3456666 8999984 45666655554 48898884 455666666655553222221111110 1124699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+.+..- ..+.+..++|++||.+++...
T Consensus 234 ~vi~~~G~----------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 234 LILDCIGG----------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp EEEESSCG----------GGHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCCc----------hHHHHHHHhccCCCEEEEEec
Confidence 99876653 146677899999999887543
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=85.86 E-value=3.1 Score=41.52 Aligned_cols=92 Identities=14% Similarity=0.021 Sum_probs=60.6
Q ss_pred CCCCCceEEEECCC--ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccceEEe
Q 012235 314 KPGETRIGLDFGVG--TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDLIHT 385 (467)
Q Consensus 314 ~~g~~r~VLDIGCG--tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDlVis 385 (467)
.+++ +||=+|++ .|..+..+++. |..|+++. ++..++.+++.|...++.....++. ..++.+|+|+-
T Consensus 163 ~~g~--~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d 237 (371)
T 3gqv_A 163 SKPV--YVLVYGGSTATATVTMQMLRLSGYIPIATC---SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALD 237 (371)
T ss_dssp SSCC--EEEEESTTSHHHHHHHHHHHHTTCEEEEEE---CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEE
T ss_pred CCCc--EEEEECCCcHHHHHHHHHHHHCCCEEEEEe---CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEE
Confidence 5565 89999983 67888888865 88888853 4566777777774334433222211 12345999986
Q ss_pred ccccccccchhhHHHHHHHHHhcc-CCCcEEEEEe
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRIL-RPGGLLWIDR 419 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvL-KPGG~LiI~~ 419 (467)
.-.- ...+....+.| ++||.++...
T Consensus 238 ~~g~---------~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 238 CITN---------VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp SSCS---------HHHHHHHHHHSCTTCEEEEESS
T ss_pred CCCc---------hHHHHHHHHHhhcCCCEEEEEe
Confidence 5543 25677888888 6999988743
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=85.57 E-value=2.1 Score=42.29 Aligned_cols=97 Identities=9% Similarity=-0.034 Sum_probs=59.0
Q ss_pred HHhcCCCC--CCceEEEECC--CccHHHHHHhh-CCC-EEEEEecCCCHHHHHHHHH-cCCccEEEccCCCCc-----cC
Q 012235 309 DILAIKPG--ETRIGLDFGV--GTGTFAARMRE-QNV-TIVSTALNLGAPFNEMIAL-RGLIPLYVTLNQRLP-----FF 376 (467)
Q Consensus 309 ~lL~l~~g--~~r~VLDIGC--GtG~~a~~La~-~g~-~V~gvdiDiS~~~l~~a~~-rg~i~~~~~d~~~Lp-----f~ 376 (467)
+...+.++ + +||-.|+ |.|..+..++. .|. .|+++ +.++..++.+.+ .+....+......+. ..
T Consensus 152 ~~~~~~~g~~~--~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~--~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~ 227 (357)
T 2zb4_A 152 EKGHITAGSNK--TMVVSGAAGACGSVAGQIGHFLGCSRVVGI--CGTHEKCILLTSELGFDAAINYKKDNVAEQLRESC 227 (357)
T ss_dssp HHSCCCTTSCC--EEEESSTTBHHHHHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHC
T ss_pred HhcCCCCCCcc--EEEEECCCcHHHHHHHHHHHHCCCCeEEEE--eCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhc
Confidence 34456677 6 8999997 44555555554 488 89884 445555666655 443222221111110 11
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+.+|+|+.+..- ..+....++|++||.+++..
T Consensus 228 ~~~~d~vi~~~G~----------~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 228 PAGVDVYFDNVGG----------NISDTVISQMNENSHIILCG 260 (357)
T ss_dssp TTCEEEEEESCCH----------HHHHHHHHTEEEEEEEEECC
T ss_pred CCCCCEEEECCCH----------HHHHHHHHHhccCcEEEEEC
Confidence 2268998876552 46788889999999988753
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=85.25 E-value=3.2 Score=35.30 Aligned_cols=107 Identities=11% Similarity=0.040 Sum_probs=65.3
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc----CCCccceEEecccccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF----FDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf----~d~sFDlVis~~~L~h~~ 393 (467)
+|+=+|+|. | .++..|.+.|..|+. +|.++...+.+.+.+ +.++.+|..+... .-...|+|+....-
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~~v~v--id~~~~~~~~~~~~g-~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~---- 81 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDIPLVV--IETSRTRVDELRERG-VRAVLGNAANEEIMQLAHLECAKWLILTIPN---- 81 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEE--EESCHHHHHHHHHTT-CEEEESCTTSHHHHHHTTGGGCSEEEECCSC----
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEE--EECCHHHHHHHHHcC-CCEEECCCCCHHHHHhcCcccCCEEEEECCC----
Confidence 688899875 4 445566667999999 455566677776655 5678887654321 12468888865432
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
+. ....+....|.+.|+..++.-. ......+.++++|...
T Consensus 82 -~~-~n~~~~~~a~~~~~~~~iiar~------~~~~~~~~l~~~G~d~ 121 (140)
T 3fwz_A 82 -GY-EAGEIVASARAKNPDIEIIARA------HYDDEVAYITERGANQ 121 (140)
T ss_dssp -HH-HHHHHHHHHHHHCSSSEEEEEE------SSHHHHHHHHHTTCSE
T ss_pred -hH-HHHHHHHHHHHHCCCCeEEEEE------CCHHHHHHHHHCCCCE
Confidence 11 1123445667778888765522 1124556777777654
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=84.97 E-value=0.93 Score=44.68 Aligned_cols=93 Identities=17% Similarity=0.093 Sum_probs=56.9
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEc-cCCCCc-----cCCCcc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVT-LNQRLP-----FFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~-d~~~Lp-----f~d~sF 380 (467)
...+ +++ +||-+|+|. |..+..+++. |. +|++ ++.++..++.+.+. ...+.. ...++. ...+.+
T Consensus 160 ~~~~-~g~--~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~--~~~~~~~~~~~~~l--a~~v~~~~~~~~~~~~~~~~~~g~ 232 (343)
T 2dq4_A 160 GSGV-SGK--SVLITGAGPIGLMAAMVVRASGAGPILV--SDPNPYRLAFARPY--ADRLVNPLEEDLLEVVRRVTGSGV 232 (343)
T ss_dssp TTCC-TTS--CEEEECCSHHHHHHHHHHHHTTCCSEEE--ECSCHHHHGGGTTT--CSEEECTTTSCHHHHHHHHHSSCE
T ss_pred hCCC-CCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHh--HHhccCcCccCHHHHHHHhcCCCC
Confidence 3456 666 899999853 6677777764 88 8888 44555544444332 222211 111110 013469
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+|+-...- ...+.+..+.|+++|.+++.
T Consensus 233 D~vid~~g~---------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 233 EVLLEFSGN---------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp EEEEECSCC---------HHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCCC---------HHHHHHHHHHHhcCCEEEEE
Confidence 999866543 25678889999999998875
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=84.80 E-value=2.4 Score=43.40 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=60.8
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC--------------
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-------------- 373 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-------------- 373 (467)
..+.+++ +||=+|+ |.|..+..+++. |..++.++ .++..++.+++.|...++.....++
T Consensus 216 ~~~~~g~--~VlV~GasG~iG~~a~qla~~~Ga~vi~~~--~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~ 291 (447)
T 4a0s_A 216 AQMKQGD--IVLIWGASGGLGSYAIQFVKNGGGIPVAVV--SSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVET 291 (447)
T ss_dssp TCCCTTC--EEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred cCCCCCC--EEEEECCCCHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHhcCCCEEEecccccccccccccccccchh
Confidence 3456666 8999986 346677777665 88888854 5667777777666433332211111
Q ss_pred ---------ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 374 ---------PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 374 ---------pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
....+.+|+|+-+..- ..+....+.|++||.+++..
T Consensus 292 ~~~~~~~v~~~~g~g~Dvvid~~G~----------~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 292 GRKLAKLVVEKAGREPDIVFEHTGR----------VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECSCH----------HHHHHHHHHSCTTCEEEESC
T ss_pred hhHHHHHHHHHhCCCceEEEECCCc----------hHHHHHHHHHhcCCEEEEEe
Confidence 0013468999875543 35677888999999988753
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=84.21 E-value=1.6 Score=43.14 Aligned_cols=91 Identities=16% Similarity=0.043 Sum_probs=60.0
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+.+++ +||-+|+ |.|..+..+++. |..|+++ .++..++.+++.|... +. ...++. .....+|
T Consensus 146 ~~~~~g~--~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~---~~~~~~~~~~~lGa~~-i~-~~~~~~~~~~~~~~~~g~D 218 (343)
T 3gaz_A 146 AQVQDGQ--TVLIQGGGGGVGHVAIQIALARGARVFAT---ARGSDLEYVRDLGATP-ID-ASREPEDYAAEHTAGQGFD 218 (343)
T ss_dssp TCCCTTC--EEEEETTTSHHHHHHHHHHHHTTCEEEEE---ECHHHHHHHHHHTSEE-EE-TTSCHHHHHHHHHTTSCEE
T ss_pred cCCCCCC--EEEEecCCCHHHHHHHHHHHHCCCEEEEE---eCHHHHHHHHHcCCCE-ec-cCCCHHHHHHHHhcCCCce
Confidence 4566676 8999994 357777777765 8898885 4556677777666422 32 222211 1234799
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+|+-+..- ..+....+.|+++|.+++.
T Consensus 219 ~vid~~g~----------~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 219 LVYDTLGG----------PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp EEEESSCT----------HHHHHHHHHEEEEEEEEES
T ss_pred EEEECCCc----------HHHHHHHHHHhcCCeEEEE
Confidence 99865442 3677888999999998874
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=83.82 E-value=2.4 Score=41.79 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=57.6
Q ss_pred CCCCceEEEEC-CC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccceEEec
Q 012235 315 PGETRIGLDFG-VG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDLIHTT 386 (467)
Q Consensus 315 ~g~~r~VLDIG-CG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDlVis~ 386 (467)
+++ +||=+| +| .|..+..+++. |.+|++ ++.++..++.+.+.|.-.++... ..+. ...+.+|+|+-.
T Consensus 150 ~g~--~VlV~gg~G~vG~~a~qla~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~vi~~~-~~~~~~~~~~~~~g~Dvv~d~ 224 (346)
T 3fbg_A 150 EGK--TLLIINGAGGVGSIATQIAKAYGLRVIT--TASRNETIEWTKKMGADIVLNHK-ESLLNQFKTQGIELVDYVFCT 224 (346)
T ss_dssp TTC--EEEEESTTSHHHHHHHHHHHHTTCEEEE--ECCSHHHHHHHHHHTCSEEECTT-SCHHHHHHHHTCCCEEEEEES
T ss_pred CCC--EEEEEcCCCHHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHhcCCcEEEECC-ccHHHHHHHhCCCCccEEEEC
Confidence 566 888884 43 46777777664 889988 55566777777776642222211 1110 123469999875
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
..- ...+....++|++||.++.
T Consensus 225 ~g~---------~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 225 FNT---------DMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp SCH---------HHHHHHHHHHEEEEEEEEE
T ss_pred CCc---------hHHHHHHHHHhccCCEEEE
Confidence 443 3567888999999999865
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=83.48 E-value=3.9 Score=44.40 Aligned_cols=72 Identities=24% Similarity=0.339 Sum_probs=46.4
Q ss_pred ccEEEccCCC-Ccc----CCCccceEEecccc-----ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHH
Q 012235 363 IPLYVTLNQR-LPF----FDNTMDLIHTTGFM-----DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMY 432 (467)
Q Consensus 363 i~~~~~d~~~-Lpf----~d~sFDlVis~~~L-----~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~ 432 (467)
+.++.+|+.. ++- .++.+|.++....- +.|. ..++..+.++++|||.+.- +.+. ..+.+
T Consensus 150 l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~-----~~~~~~l~~~~~~g~~~~t--~~~~----~~vr~ 218 (689)
T 3pvc_A 150 LDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWN-----EQLFNAMARMTRPGGTFST--FTAA----GFVRR 218 (689)
T ss_dssp EEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCS-----HHHHHHHHHHEEEEEEEEE--SCCC----HHHHH
T ss_pred EEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhh-----HHHHHHHHHHhCCCCEEEe--ccCc----HHHHH
Confidence 3455666432 221 14689999874321 1232 4689999999999998554 4333 36778
Q ss_pred HHHHcCceeeEEE
Q 012235 433 MFLQFRYKKHKWA 445 (467)
Q Consensus 433 ~i~~~Gf~~l~W~ 445 (467)
.+.+.||..-++.
T Consensus 219 ~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 219 GLQQAGFNVTKVK 231 (689)
T ss_dssp HHHHTTCEEEEEE
T ss_pred HHHhCCeEEEecc
Confidence 8899999766554
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=83.06 E-value=6.9 Score=42.24 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=39.6
Q ss_pred CCccceEEeccccccccchhh-HHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLL-LDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~-l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
...||+++....- .-.+++. -..++..+.++++|||.+.. +... ..+.+.+.+.||..-+.
T Consensus 177 ~~~~d~~~~D~f~-p~~np~~w~~~~~~~l~~~~~~g~~~~t--~~~~----~~vr~~L~~aGf~v~~~ 238 (676)
T 3ps9_A 177 NQKVDAWFLDGFA-PAKNPDMWTQNLFNAMARLARPGGTLAT--FTSA----GFVRRGLQDAGFTMQKR 238 (676)
T ss_dssp TTCEEEEEECCSC-GGGCGGGSCHHHHHHHHHHEEEEEEEEE--SCCC----HHHHHHHHHHTCEEEEE
T ss_pred CCcccEEEECCCC-CcCChhhhhHHHHHHHHHHhCCCCEEEe--ccCc----HHHHHHHHhCCeEEEec
Confidence 4679999974321 1111110 14689999999999998654 3333 36778888999976554
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=82.98 E-value=2.3 Score=41.22 Aligned_cols=88 Identities=11% Similarity=-0.033 Sum_probs=57.6
Q ss_pred eEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC--CccCCCccceEEeccccccccc
Q 012235 320 IGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR--LPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~--Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.||=+|+ |.|..+..+++. |.+|++++ .++...+.+.+.|.-.++...... .....+.+|+|+-.-.-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~--~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~----- 221 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVS--GRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGD----- 221 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEE--SCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCH-----
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCc-----
Confidence 3888886 467888888765 88999854 456667777776643333221111 11234578988764332
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+.+..+.|+|+|.+++..
T Consensus 222 -----~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 222 -----KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp -----HHHHHHHHTEEEEEEEEECC
T ss_pred -----HHHHHHHHHHhcCCEEEEEe
Confidence 37888999999999998754
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=82.70 E-value=20 Score=34.43 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=63.7
Q ss_pred eEEEECCCccHHHHHHhh---------CCCEEEEEe-----cCCCH--------------------HHHHHHH---H---
Q 012235 320 IGLDFGVGTGTFAARMRE---------QNVTIVSTA-----LNLGA--------------------PFNEMIA---L--- 359 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~---------~g~~V~gvd-----iDiS~--------------------~~l~~a~---~--- 359 (467)
.|+++|+-.|..+..++. ..-+++++| ++.++ ..++.+. +
T Consensus 72 ~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~ 151 (257)
T 3tos_A 72 VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSD 151 (257)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTS
T ss_pred eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhhh
Confidence 699999999987766543 135788876 33211 1122211 1
Q ss_pred -----cCCccEEEccCCC-Cc-----cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 360 -----RGLIPLYVTLNQR-LP-----FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 360 -----rg~i~~~~~d~~~-Lp-----f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
...+.++.+++.+ +| .+..+||+|+...-. +.+ ....+..+...|+|||+++++++..
T Consensus 152 ~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~---t~~~le~~~p~l~~GGvIv~DD~~~ 220 (257)
T 3tos_A 152 FFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEP---TKAVLEAIRPYLTKGSIVAFDELDN 220 (257)
T ss_dssp TTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHH---HHHHHHHHGGGEEEEEEEEESSTTC
T ss_pred hcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cch---HHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 1337788888543 33 234579999987743 222 2467889999999999999999754
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=82.29 E-value=2 Score=42.67 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=55.0
Q ss_pred CCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCC-HHHHHHHHHcCCccEEEccCCCCccC------CCccceEEec
Q 012235 316 GETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLG-APFNEMIALRGLIPLYVTLNQRLPFF------DNTMDLIHTT 386 (467)
Q Consensus 316 g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS-~~~l~~a~~rg~i~~~~~d~~~Lpf~------d~sFDlVis~ 386 (467)
++ +||-+|+|. |..+..+++. |..|++++.+.. ....+.+.+.|. ..+ + .. .+. .+.+|+|+.+
T Consensus 181 g~--~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga-~~v--~-~~-~~~~~~~~~~~~~d~vid~ 253 (366)
T 2cdc_A 181 CR--KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKT-NYY--N-SS-NGYDKLKDSVGKFDVIIDA 253 (366)
T ss_dssp TC--EEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTC-EEE--E-CT-TCSHHHHHHHCCEEEEEEC
T ss_pred CC--EEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCC-cee--c-hH-HHHHHHHHhCCCCCEEEEC
Confidence 66 899999842 4555555544 889988654430 044566665553 222 2 22 211 1469999876
Q ss_pred cccccccchhhHHHHH-HHHHhccCCCcEEEEEec
Q 012235 387 GFMDGWLDMLLLDFIL-FDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L-~el~RvLKPGG~LiI~~~ 420 (467)
... ...+ .+..+.|++||.+++...
T Consensus 254 ~g~---------~~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 254 TGA---------DVNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp CCC---------CTHHHHHHGGGEEEEEEEEECSC
T ss_pred CCC---------hHHHHHHHHHHHhcCCEEEEEec
Confidence 554 1255 888999999999887543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 467 | ||||
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 1e-05 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-04 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 0.002 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.003 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 22/159 (13%), Positives = 39/159 (24%), Gaps = 9/159 (5%)
Query: 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPL 365
L+ + R+ LD G G G A + +
Sbjct: 7 LMIKTAECRAEH-RV-LDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE 64
Query: 366 YVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL-LDFILFDWDRILRPGG-LLWIDRFFCN 423
V Q D + + + R+L+ G L +D +
Sbjct: 65 NVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE 124
Query: 424 KKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEK 462
LD+++ + R H S A+
Sbjct: 125 DPVLDEFVNHLNRLRDPSHVRESSLSE-----WQAMFSA 158
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 26/156 (16%), Positives = 43/156 (27%), Gaps = 9/156 (5%)
Query: 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGA-PFNEMIALRGLIPLYV 367
I A+K E + LD G G A +V+ L
Sbjct: 9 QIAALKGNE-EV-LDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVE 66
Query: 368 TLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDL 427
+ T + H + + R+L+ GG L + + D
Sbjct: 67 YVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDA 126
Query: 428 DDYMYMFL-QFRYKKHKWAISPKSKDEVYLSALLEK 462
D Y ++ + R H A +LE+
Sbjct: 127 FDVFYNYVEKERDYSHHRAWKKSD-----WLKMLEE 157
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.6 bits (86), Expect = 0.002
Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 19/131 (14%)
Query: 304 DFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPF--NEMIALRG 361
+L+ +L R+ LD GTG + + E+ ++ S + + R
Sbjct: 46 AWLL-GLLRQHGCH-RV-LDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRR 102
Query: 362 LIPLYV----------TLNQRLPFFDNTMDLIHTTG----FMDGWLDMLLLDFILFDWDR 407
P + TL++ +P D +I D D L +
Sbjct: 103 KEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 162
Query: 408 ILRPGGLLWID 418
++RPGGLL ID
Sbjct: 163 MVRPGGLLVID 173
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.2 bits (85), Expect = 0.003
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 10/120 (8%)
Query: 303 VDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQ-----NVTIVSTALNLGAPFNEMI 357
V FL++ + I I +D+G G G + T + + L A E+
Sbjct: 15 VSFLVNTVWKITKP-VHI-VDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELF 72
Query: 358 ALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417
L ++ + ++ D+ F+ + +L ++ GG +
Sbjct: 73 RLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTT---PETMLQKMIHSVKKGGKIIC 129
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 467 | |||
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.81 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.79 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.76 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.72 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.7 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.68 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.68 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.67 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.66 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.64 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.6 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.6 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.59 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.58 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.57 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.57 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.56 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.53 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.51 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.5 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.49 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.49 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.49 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.48 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.45 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.38 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.37 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.37 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.37 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.34 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.34 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.32 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.27 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.24 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.21 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.21 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.2 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.2 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.19 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.17 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.13 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.13 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.11 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.11 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.09 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.06 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.04 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.02 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.99 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.97 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.86 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.84 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.84 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.78 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.71 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.65 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.65 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.61 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.56 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.56 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.52 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.52 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.46 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.44 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.42 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.38 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.3 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.28 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.25 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.12 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.08 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.04 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.98 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.98 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.93 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.9 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.9 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.87 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.86 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.86 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.83 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.75 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.69 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.61 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.36 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.32 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.3 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.29 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.28 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.26 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.2 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.18 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.17 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.09 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.8 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.77 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.74 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.43 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.3 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.17 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.09 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.82 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.62 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.21 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.8 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.79 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.79 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.54 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.13 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.12 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.04 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.47 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 93.42 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.36 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.01 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.86 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.63 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.23 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 91.91 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 91.66 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 91.21 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 91.03 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 90.21 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.55 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 89.34 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.19 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 89.03 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 88.11 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 87.88 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.75 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 87.42 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 87.39 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 85.84 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 85.36 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 84.3 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 84.21 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 84.21 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 84.06 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 81.63 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 80.8 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 80.19 |
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1e-20 Score=183.56 Aligned_cols=171 Identities=19% Similarity=0.246 Sum_probs=125.5
Q ss_pred CCCCcHH-HHHHHHHcCCCCCCCCCccccCCCCCCCCccCCccCCCCCCCCcccccccccccccccccCCCCCCCCccCC
Q 012235 206 YCKDDWN-LAQKLMVNGCDPLPRRRCLTRASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTG 284 (467)
Q Consensus 206 ~Cp~d~~-l~~~l~~~~C~plprr~C~~~ap~gY~~plp~P~s~~~~p~d~~~~W~~y~c~~~~cl~s~~~~~~~~~C~~ 284 (467)
.||.|.. |........|+. +|+|+.+++||++++|-+.+....|.+..
T Consensus 3 ~CP~C~~~L~~~~~~l~C~~---~h~fd~~~~Gy~~ll~~~~~~~~~~~~~~---------------------------- 51 (268)
T d1p91a_ 3 SCPLCHQPLSREKNSYICPQ---RHQFDMAKEGYVNLLPVQHKRSRDPGDSA---------------------------- 51 (268)
T ss_dssp BCTTTCCBCEEETTEEECTT---CCEEEBCTTSCEECSCSSSSCSCCCSSSH----------------------------
T ss_pred cCCCCChhhhcCCCeEECCC---CCccccccCceEecccccccccCCCCCCH----------------------------
Confidence 4999976 444444467987 89999999999999876655433222211
Q ss_pred chhhhcccccccccCCcChH---HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH
Q 012235 285 CFEMDKEKPKWVANRSVPVD---FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL 359 (467)
Q Consensus 285 cfdm~~e~~~W~~~~~~~~d---~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~ 359 (467)
++..+++.|+. .+.+.. ..+..+....+....+|||||||+|.++..|++. +.+++| +|+|+.|++.+++
T Consensus 52 --~~~~ar~~~l~-~g~~~~l~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~g--iD~s~~~~~~a~~ 126 (268)
T d1p91a_ 52 --EMMQARRAFLD-AGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFG--LDVSKVAIKAAAK 126 (268)
T ss_dssp --HHHHHHHHHHT-TTTTHHHHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEE--EESCHHHHHHHHH
T ss_pred --HHHHHHHHHHH-cCchHHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEE--ecchHhhhhhhhc
Confidence 35556677766 343221 1222222222333348999999999999999988 456667 8889999999987
Q ss_pred cC-CccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 360 RG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 360 rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+. .+.+.++|+.++|+++++||+|++.+++.| +.|+.|+|||||.|++.++..
T Consensus 127 ~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~----------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 127 RYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK----------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp HCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC----------HHHHHHHEEEEEEEEEEEECT
T ss_pred ccccccceeeehhhccCCCCCEEEEeecCCHHH----------HHHHHHHhCCCcEEEEEeeCC
Confidence 75 488999999999999999999999988743 568999999999999987643
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.79 E-value=7.1e-19 Score=164.04 Aligned_cols=130 Identities=17% Similarity=0.238 Sum_probs=107.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+++++++ +|||||||+|.++..+++++.+|+| +|+|+.|++.|+++ + .+.+++++++.+|+++++|
T Consensus 7 ll~~~~l~~~~--rVLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 7 LMQIAALKGNE--EVLDVATGGGHVANAFAPFVKKVVA--FDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHhcCCCCcC--EEEEecccCcHHHHHHHHhCCEEEE--EECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 34567788887 9999999999999999999999988 77889998887543 2 3789999999999999999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------------------CHHHHHHHHHHcC
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------------------DLDDYMYMFLQFR 438 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------------------~~~~~~~~i~~~G 438 (467)
|+|+|..+++|+.+. ..++.++.|+|||||++++.++..+.. ..+++.+++++.|
T Consensus 83 D~v~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 159 (231)
T d1vl5a_ 83 HIVTCRIAAHHFPNP---ASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAG 159 (231)
T ss_dssp EEEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHT
T ss_pred ccccccccccccCCH---HHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCC
Confidence 999999999766665 689999999999999999987655332 1246778888999
Q ss_pred ceeeE
Q 012235 439 YKKHK 443 (467)
Q Consensus 439 f~~l~ 443 (467)
|..++
T Consensus 160 f~~~~ 164 (231)
T d1vl5a_ 160 FELEE 164 (231)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 97654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.76 E-value=3.7e-18 Score=160.73 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=96.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~s 379 (467)
++.+.++++++. +|||||||+|.++..|++++.+|+| +|+|+.|++.|+++ + .+.++++|++.+|+++++
T Consensus 7 ~l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~~v~g--vD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 7 LMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIG--VDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEE--EESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCCeEEE--EeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence 355678899998 9999999999999999999999988 88889998877543 3 378999999999999999
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
||+|+|..+++|+.+. ..+++++.|+|||||++++.++..+.
T Consensus 83 fD~v~~~~~l~~~~d~---~~~l~~~~r~LkpgG~~~~~~~~~~~ 124 (234)
T d1xxla_ 83 FDIITCRYAAHHFSDV---RKAVREVARVLKQDGRFLLVDHYAPE 124 (234)
T ss_dssp EEEEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred cceeeeeceeecccCH---HHHHHHHHHeeCCCcEEEEEEcCCCC
Confidence 9999999999666554 68999999999999999998765543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.72 E-value=2.5e-17 Score=159.48 Aligned_cols=128 Identities=21% Similarity=0.209 Sum_probs=106.8
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceE
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
.+.++. +|||||||+|.++..|+++ +..|+| +|+++.+++.++++ + .+.++++|+.++|+++++||+|
T Consensus 64 ~l~~~~--~vLDiGcG~G~~~~~la~~~~~~v~g--vD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V 139 (282)
T d2o57a1 64 VLQRQA--KGLDLGAGYGGAARFLVRKFGVSIDC--LNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI 139 (282)
T ss_dssp CCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCC--EEEEeCCCCcHHHhhhhccCCcEEEE--Eeccchhhhhhhcccccccccccccccccccccccccccccchh
Confidence 466676 9999999999999999987 888988 77888888877653 2 4789999999999999999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------------CHHHHHHHHHHcCceeeEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------------------DLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------------------~~~~~~~~i~~~Gf~~l~W 444 (467)
++..+++|+.+. ..++.++.|+|||||.|++.++..... ....+.+++++.||..+.+
T Consensus 140 ~~~~~l~h~~d~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~ 216 (282)
T d2o57a1 140 WSQDAFLHSPDK---LKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT 216 (282)
T ss_dssp EEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred hccchhhhccCH---HHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEE
Confidence 999999888766 589999999999999999987654321 2457788899999988776
Q ss_pred EE
Q 012235 445 AI 446 (467)
Q Consensus 445 ~~ 446 (467)
.-
T Consensus 217 ~d 218 (282)
T d2o57a1 217 FS 218 (282)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=6.4e-17 Score=153.27 Aligned_cols=134 Identities=17% Similarity=0.237 Sum_probs=109.0
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d 377 (467)
.+.+.+.+.+++ +|||||||+|.++..++++ +..|+| +|+|+.|++.++++ + .++++++|+..+ +++
T Consensus 24 ~l~~~~~l~pg~--~VLDiGCG~G~~~~~la~~~~~~v~G--vD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~ 98 (245)
T d1nkva_ 24 TLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTG--IDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VAN 98 (245)
T ss_dssp HHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCS
T ss_pred HHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHhcCCEEEE--EecccchhhHHHHHHHHhhccccchhhhhHHhhc-ccc
Confidence 466778888888 9999999999999999876 788888 78889998877654 3 378999999988 468
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------------CHHHHHHHHHHcC
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------------------DLDDYMYMFLQFR 438 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------------------~~~~~~~~i~~~G 438 (467)
++||+|+|..+++|+.+. ..++.++.|+|||||++++.++..... ....+...+++.|
T Consensus 99 ~~fD~v~~~~~~~~~~d~---~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG 175 (245)
T d1nkva_ 99 EKCDVAACVGATWIAGGF---AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLG 175 (245)
T ss_dssp SCEEEEEEESCGGGTSSS---HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTT
T ss_pred CceeEEEEEehhhccCCH---HHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcC
Confidence 999999999999877766 689999999999999999986543221 2346888899999
Q ss_pred ceeeEEEEc
Q 012235 439 YKKHKWAIS 447 (467)
Q Consensus 439 f~~l~W~~~ 447 (467)
|..+.....
T Consensus 176 ~~~v~~~~~ 184 (245)
T d1nkva_ 176 YDVVEMVLA 184 (245)
T ss_dssp BCCCEEEEC
T ss_pred CEEEEEEeC
Confidence 987765443
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=6.8e-17 Score=148.68 Aligned_cols=123 Identities=21% Similarity=0.295 Sum_probs=101.9
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccccc
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
.+.+++ +|||||||+|.++..+++ ++| +|+|+.+++.+++++ +.+++++++++|+++++||+|++..+++|
T Consensus 33 ~~~~~~--~vLDiGcG~G~~~~~~~~----~~g--iD~s~~~~~~a~~~~-~~~~~~d~~~l~~~~~~fD~I~~~~~l~h 103 (208)
T d1vlma_ 33 CLLPEG--RGVEIGVGTGRFAVPLKI----KIG--VEPSERMAEIARKRG-VFVLKGTAENLPLKDESFDFALMVTTICF 103 (208)
T ss_dssp HHCCSS--CEEEETCTTSTTHHHHTC----CEE--EESCHHHHHHHHHTT-CEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred hhCCCC--eEEEECCCCcccccccce----EEE--EeCChhhcccccccc-ccccccccccccccccccccccccccccc
Confidence 344554 799999999999998864 456 788999999998875 78999999999999999999999999987
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCC---------------------CCHHHHHHHHHHcCceeeEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK---------------------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~---------------------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+.+. ..++.++.|+|+|||.+++.++.... -..+++.+++++.||+.++...
T Consensus 104 ~~d~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 104 VDDP---ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp SSCH---HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccc---ccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 7655 68999999999999999998754321 0245889999999998887543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=8e-17 Score=150.33 Aligned_cols=96 Identities=22% Similarity=0.316 Sum_probs=85.9
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecc-ccccccchhhH
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTG-FMDGWLDMLLL 398 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~-~L~h~~~~~~l 398 (467)
+|||+|||+|.++..|++.|..|+| +|+|+.|++.+++++...++.++++++|+++++||+|+|.. +++|+.+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~~v~g--iD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~--- 119 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGFEVVL--VDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK--- 119 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTCEEEE--EESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH---
T ss_pred EEEEECCCCchhcccccccceEEEE--eecccccccccccccccccccccccccccccccccceeeecchhhhhhhH---
Confidence 8999999999999999999999999 78889999999998877788999999999999999999865 66555554
Q ss_pred HHHHHHHHhccCCCcEEEEEec
Q 012235 399 DFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 399 ~~~L~el~RvLKPGG~LiI~~~ 420 (467)
..+++++.|+|||||.++++.+
T Consensus 120 ~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 120 DKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHhhcCcCcEEEEEEC
Confidence 6799999999999999999764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=1.1e-16 Score=147.41 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=87.9
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEecc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+.++. +|||||||+|.++..+++.+..|+| +|+|+.|++.++++ + .+.++.+|+..+|+++++||+|+|..
T Consensus 35 l~~~~--~ILDiGcG~G~~~~~la~~~~~v~g--iD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~ 110 (226)
T d1ve3a1 35 MKKRG--KVLDLACGVGGFSFLLEDYGFEVVG--VDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID 110 (226)
T ss_dssp CCSCC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred cCCCC--EEEEECCCcchhhhhHhhhhccccc--ccccccchhhhhhhhccccccccccccccccccccCcCceEEEEec
Confidence 34555 8999999999999999999999999 77889999888653 2 36788899999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+++|+.+ ..+..+++++.|+|||||.+++..+
T Consensus 111 ~l~~~~~-~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 111 SIVHFEP-LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CGGGCCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhCCh-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 9966543 3467899999999999999988654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.8e-16 Score=144.15 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=105.0
Q ss_pred ceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC------CccEEEccCCCCccCCCccceEEecccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG------LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg------~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
.+|||||||+|.++..++++ +.+|++ +|+|+.|++.|+++. .+.++++|++.+++++++||+|++..+++|
T Consensus 62 ~~vLDiGcG~G~~~~~l~~~~~~~v~~--vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h 139 (222)
T d2ex4a1 62 SCALDCGAGIGRITKRLLLPLFREVDM--VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 139 (222)
T ss_dssp SEEEEETCTTTHHHHHTTTTTCSEEEE--EESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CEEEEeccCCCHhhHHHHHhcCCEEEE--eecCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 48999999999999998766 557888 789999999987652 257899999999999999999999999977
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------CHHHHHHHHHHcCceeeEEEEc
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------DLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
+.++ .+..++.++.++|||||.+++.+...... ..+.+.+++++.||+.+.....
T Consensus 140 ~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q 206 (222)
T d2ex4a1 140 LTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 206 (222)
T ss_dssp SCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred chhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence 6654 35689999999999999999987655432 3458899999999998876643
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.64 E-value=1.3e-15 Score=142.72 Aligned_cols=132 Identities=17% Similarity=0.070 Sum_probs=105.8
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCccCCCccce
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+.+..+.....+. +|||||||+|.++..++++|.+|+| +|+|+.+++.++++. .+.+++++.+.+++ +++||+
T Consensus 10 ~~~~~~~~~~~~~--~VLDiGcG~G~~~~~l~~~g~~v~g--iD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~ 84 (225)
T d2p7ia1 10 FMVRAFTPFFRPG--NLLELGSFKGDFTSRLQEHFNDITC--VEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDN 84 (225)
T ss_dssp HHHHHHGGGCCSS--CEEEESCTTSHHHHHHTTTCSCEEE--EESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEE
T ss_pred HHHHHhhhhCCCC--cEEEEeCCCcHHHHHHHHcCCeEEE--EeCcHHHhhhhhccccccccccccccccccc-cccccc
Confidence 3445555655555 7999999999999999999999998 778899999998763 37889999888876 689999
Q ss_pred EEeccccccccchhhHHHHHHHHH-hccCCCcEEEEEecccCC------------------------------CCHHHHH
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWD-RILRPGGLLWIDRFFCNK------------------------------KDLDDYM 431 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~-RvLKPGG~LiI~~~~~~~------------------------------~~~~~~~ 431 (467)
|++..+++|+.++ ..++.++. |+|||||.+++..+.... -..+.+.
T Consensus 85 I~~~~vleh~~d~---~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~ 161 (225)
T d2p7ia1 85 IVLTHVLEHIDDP---VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE 161 (225)
T ss_dssp EEEESCGGGCSSH---HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHH
T ss_pred ccccceeEecCCH---HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHH
Confidence 9999999887766 57899997 899999999997642110 1245788
Q ss_pred HHHHHcCceeeEE
Q 012235 432 YMFLQFRYKKHKW 444 (467)
Q Consensus 432 ~~i~~~Gf~~l~W 444 (467)
+++++.||+.+.-
T Consensus 162 ~~l~~~Gf~i~~~ 174 (225)
T d2p7ia1 162 RDASRAGLQVTYR 174 (225)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHHCCCEEEEE
Confidence 8999999987653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.60 E-value=7.8e-15 Score=134.49 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=83.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
+|||||||+|..+..|+++|.+|++ +|+|+.|++.++++ + .+.+...|...+++ +++||+|++..+++|+.
T Consensus 33 rvLDiGcG~G~~~~~la~~g~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~ 109 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGYDVTA--WDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLE 109 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSC
T ss_pred cEEEECCCCCHHHHHHHHHhhhhcc--ccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecCC
Confidence 7999999999999999999999998 78888888876532 3 26778889888876 78999999999996654
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+ .....++.++.++|+|||++++..+..
T Consensus 110 ~-~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 110 A-QTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp T-THHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred H-HHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 4 346789999999999999999976543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.60 E-value=7.1e-15 Score=137.21 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=81.1
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHc----C-C--ccEEEccCCCCccCCCccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALR----G-L--IPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~r----g-~--i~~~~~d~~~Lpf~d~sFD 381 (467)
++++. +|||+|||+|..+..|++. +.+|+| +|+|+.|++.|+++ + . +.+..++...+ +.+.+|
T Consensus 37 ~~~~~--~vLDlGCGtG~~~~~l~~~~~~~~~~v~g--iD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~--~~~~~d 110 (225)
T d1im8a_ 37 VTADS--NVYDLGCSRGAATLSARRNINQPNVKIIG--IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV--EIKNAS 110 (225)
T ss_dssp CCTTC--EEEEESCTTCHHHHHHHHTCCCSSCEEEE--ECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC--CCCSEE
T ss_pred cCCCC--EEEEeccchhhHHHHHHHhhcCCCCceEE--eCCCHHHHHHHHHHhHhhcccchhhhccchhhcc--ccccce
Confidence 45565 8999999999999999863 778888 89999999999764 2 2 33445555544 457899
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+|+++.++ |+.+.++...++++++|+|||||.|++.++..
T Consensus 111 ~i~~~~~l-~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 111 MVILNFTL-QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp EEEEESCG-GGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred eeEEeeec-cccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence 99999999 55555456799999999999999999987554
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.59 E-value=6.3e-15 Score=141.35 Aligned_cols=126 Identities=17% Similarity=0.088 Sum_probs=103.5
Q ss_pred CceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
..+|||+|||+|.++..|+.+ ...|++ +|+++.|++.|+++. .+.+++++++.+++++++||+|++..+++|+
T Consensus 94 ~~~vLD~GcG~G~~t~~ll~~~~~~v~~--vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl 171 (254)
T d1xtpa_ 94 TSRALDCGAGIGRITKNLLTKLYATTDL--LEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL 171 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHHCSEEEE--EESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred CCeEEEecccCChhhHHHHhhcCceEEE--EcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecccccc
Confidence 348999999999999998866 557888 788999999997652 3678999999999999999999999999777
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------CHHHHHHHHHHcCceeeEEEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
.++ .+..++.++.++|||||++++.+.....+ ..+.+.+++++.||+.++-..
T Consensus 172 ~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 172 TDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp CHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred chh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 655 35689999999999999999976544322 245899999999998887654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=5.4e-15 Score=138.99 Aligned_cols=99 Identities=21% Similarity=0.231 Sum_probs=83.3
Q ss_pred CceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
.++|||||||+|.++..|++.|..|+| +|+|+.|++.|+++ + .+.++++|+++++++ ++||+|+|.+...++
T Consensus 42 ~~~iLDiGcGtG~~~~~l~~~~~~v~g--vD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 42 VRRVLDLACGTGIPTLELAERGYEVVG--LDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCEEEEeCCCCCccchhhcccceEEEE--Eeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 348999999999999999999999998 78889999988754 3 388999999999986 689999997543345
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+......+|.+++++|||||+++++.
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 555556899999999999999998854
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.57 E-value=3.7e-15 Score=133.61 Aligned_cols=107 Identities=12% Similarity=-0.029 Sum_probs=87.8
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC------------------CccEEEccCCC
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG------------------LIPLYVTLNQR 372 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg------------------~i~~~~~d~~~ 372 (467)
+.+.++. +|||+|||+|..+..|+++|.+|+| +|+|+.|++.++++. .+.++.++...
T Consensus 16 l~~~~~~--rvLd~GCG~G~~a~~la~~G~~V~g--vD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (201)
T d1pjza_ 16 LNVVPGA--RVLVPLCGKSQDMSWLSGQGYHVVG--AELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 91 (201)
T ss_dssp HCCCTTC--EEEETTTCCSHHHHHHHHHCCEEEE--EEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred cCCCCCC--EEEEecCcCCHHHHHHHHcCCceEe--ecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence 5667776 9999999999999999999999999 888999999998641 14577778777
Q ss_pred Ccc-CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 373 LPF-FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 373 Lpf-~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
++. ...+||+|++..++.| ..+......++++.++|||||.+++..+..
T Consensus 92 l~~~~~~~~D~i~~~~~l~~-l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 92 LTARDIGHCAAFYDRAAMIA-LPADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp STHHHHHSEEEEEEESCGGG-SCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred cccccccceeEEEEEeeeEe-cchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 763 4578999999999954 444446789999999999999998876554
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=1.4e-14 Score=142.11 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=102.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH----cCCccEEEccCCCCccCCCccc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL----RGLIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~----rg~i~~~~~d~~~Lpf~d~sFD 381 (467)
+.+.+++++|. +|||||||.|.++..++++ |..|+| +++|+..++.+.+ .++...+.....+.++.+++||
T Consensus 53 ~~~~l~l~~G~--~VLDiGCG~G~~~~~~a~~~g~~v~g--it~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD 128 (291)
T d1kpia_ 53 ALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIG--LTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVD 128 (291)
T ss_dssp HHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCS
T ss_pred HHHhcCCCCCC--EEEEecCcchHHHHHHHHhcCcceee--ccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccc
Confidence 44556788888 9999999999999999866 999998 6777776665543 3543222222333456689999
Q ss_pred eEEeccccccccch------hhHHHHHHHHHhccCCCcEEEEEecccCC-------------------------------
Q 012235 382 LIHTTGFMDGWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNK------------------------------- 424 (467)
Q Consensus 382 lVis~~~L~h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------------------------- 424 (467)
.|+|..+++|+.+. ..++.+++++.|+|||||.+++.++....
T Consensus 129 ~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~ 208 (291)
T d1kpia_ 129 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGR 208 (291)
T ss_dssp EEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCC
T ss_pred eEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCC
Confidence 99999999999763 33578999999999999999997654321
Q ss_pred -CCHHHHHHHHHHcCceeeEEEEc
Q 012235 425 -KDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 425 -~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
.....+...++..||+...|...
T Consensus 209 lps~~~~~~~~e~~gl~v~~~~~~ 232 (291)
T d1kpia_ 209 LPRISQVDYYSSNAGWKVERYHRI 232 (291)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred CCCHHHHHhhhcccccccceeeec
Confidence 13456777888899998888654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.56 E-value=5.4e-15 Score=139.56 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=84.3
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEec-cccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTT-GFMDGW 392 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~-~~L~h~ 392 (467)
++|||+|||+|.++..|+++|.+|+| +|.|+.|++.|+++ + .+.++++|+..+++ +++||+|+|. .++.|+
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~~v~G--vD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~ 115 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFKNTWA--VDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNYI 115 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSSEEEE--ECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGGC
T ss_pred CeEEEEeCcCCHHHHHHHHhCCccEe--eccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeeecc
Confidence 48999999999999999999999998 88999999988654 3 38899999998886 5789999986 567677
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.+...+..+++++.++|||||.|+++
T Consensus 116 ~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 116 IDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 77777889999999999999999874
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.53 E-value=5.9e-14 Score=133.84 Aligned_cols=134 Identities=17% Similarity=0.104 Sum_probs=95.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~s 379 (467)
+...+.+... ++|||||||+|.++..++++...+.++.+|++ ++++.+.+ .+ .+.++.+|.... .+.+
T Consensus 72 ~~~~~d~~~~--~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~~~~--~~~~ 146 (253)
T d1tw3a2 72 PAAAYDWTNV--RHVLDVGGGKGGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVEGDFFEP--LPRK 146 (253)
T ss_dssp HHHHSCCTTC--SEEEEETCTTSHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEECCTTSC--CSSC
T ss_pred HHhhcCCccC--CEEEEeCCCCCHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHHhhcccchhhccccchhh--cccc
Confidence 3344455443 49999999999999999988433333336653 45554443 33 378888887542 2467
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-----------------------CHHHHHHHHHH
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-----------------------DLDDYMYMFLQ 436 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-----------------------~~~~~~~~i~~ 436 (467)
||+|++..+++||.+.+ ...+|+++.|+|||||.++|.+.....+ ..++|.+++++
T Consensus 147 ~D~v~~~~vlh~~~d~~-~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~ 225 (253)
T d1tw3a2 147 ADAIILSFVLLNWPDHD-AVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAAS 225 (253)
T ss_dssp EEEEEEESCGGGSCHHH-HHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred hhheeeccccccCCchh-hHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHH
Confidence 99999999997776553 4688999999999999999987644321 23578889999
Q ss_pred cCceeeEEEE
Q 012235 437 FRYKKHKWAI 446 (467)
Q Consensus 437 ~Gf~~l~W~~ 446 (467)
.||+..+...
T Consensus 226 AGf~~~~v~~ 235 (253)
T d1tw3a2 226 AGLVVEEVRQ 235 (253)
T ss_dssp TTEEEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9998776543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.4e-14 Score=133.30 Aligned_cols=133 Identities=11% Similarity=-0.037 Sum_probs=103.0
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-----------------------C
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-----------------------L 362 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-----------------------~ 362 (467)
++.+++.+.++. +|||+|||+|..+..|+++|.+|+| +|+|+.+++.++++. .
T Consensus 36 ~~~~~l~~~~~~--rvLd~GCG~G~~a~~LA~~G~~V~g--vD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (229)
T d2bzga1 36 HLDTFLKGKSGL--RVFFPLCGKAVEMKWFADRGHSVVG--VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN 111 (229)
T ss_dssp HHHHHHTTCCSC--EEEETTCTTCTHHHHHHHTTCEEEE--ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred HHHHhcCCCCCC--EEEEeCCCCcHHHHHHHhCCCcEEE--EeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence 455667777766 8999999999999999999999999 899999999886542 2
Q ss_pred ccEEEccCCCCc-cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------CHHHHHH
Q 012235 363 IPLYVTLNQRLP-FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------DLDDYMY 432 (467)
Q Consensus 363 i~~~~~d~~~Lp-f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------~~~~~~~ 432 (467)
+.++++|...++ ...+.||+|+...+++|+.+. ..+.++.++.++|||||++++..+..... ..+++.+
T Consensus 112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~-~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~ 190 (229)
T d2bzga1 112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPG-DRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIER 190 (229)
T ss_dssp EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGG-GHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHH
T ss_pred EEEEEcchhhccccccCceeEEEEEEEEEeccch-hhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHH
Confidence 567888877775 567899999999999666544 46889999999999999988877654321 2346777
Q ss_pred HHHHcCceeeEE
Q 012235 433 MFLQFRYKKHKW 444 (467)
Q Consensus 433 ~i~~~Gf~~l~W 444 (467)
++.. +|....+
T Consensus 191 lf~~-~~~i~~l 201 (229)
T d2bzga1 191 LFGK-ICNIRCL 201 (229)
T ss_dssp HHTT-TEEEEEE
T ss_pred HhcC-CCEEEEE
Confidence 7765 3544333
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.6e-14 Score=133.72 Aligned_cols=127 Identities=14% Similarity=0.033 Sum_probs=94.8
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc---CCcc------------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR---GLIP------------------------------ 364 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r---g~i~------------------------------ 364 (467)
.+|||||||+|.++..++..+. .|+| +|+|+.|++.++++ ....
T Consensus 53 ~~vLDlGcG~G~~~~~~~~~~~~~v~g--iD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (257)
T d2a14a1 53 DTLIDIGSGPTIYQVLAACDSFQDITL--SDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 130 (257)
T ss_dssp EEEEESSCTTCCGGGTTGGGTEEEEEE--EESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CEEEEECCCCCHhHHHHhccccCcEEE--ecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence 4899999999999888877754 5888 88899999888643 1000
Q ss_pred ---EEE----ccCCCCccCCCccceEEeccccccccch-hhHHHHHHHHHhccCCCcEEEEEecccCC------------
Q 012235 365 ---LYV----TLNQRLPFFDNTMDLIHTTGFMDGWLDM-LLLDFILFDWDRILRPGGLLWIDRFFCNK------------ 424 (467)
Q Consensus 365 ---~~~----~d~~~Lpf~d~sFDlVis~~~L~h~~~~-~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------ 424 (467)
... .+....++.+++||+|++.++++|.... +.+..+++++.|+|||||+|++.++....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~ 210 (257)
T d2a14a1 131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV 210 (257)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred hhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccccc
Confidence 111 1222346778999999999999777532 34678999999999999999998765432
Q ss_pred -CCHHHHHHHHHHcCceeeEEEEc
Q 012235 425 -KDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 425 -~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
-+.+.+.++++..||..+.....
T Consensus 211 ~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 211 ALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEe
Confidence 24668999999999998777544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.49 E-value=3.2e-14 Score=135.24 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=84.2
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc-CCCccceE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF-FDNTMDLI 383 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf-~d~sFDlV 383 (467)
..++. +|||||||+|..+..+++.+. .|+| +|+|+.|++.|.++ + .+.+.++|+...++ .+++||+|
T Consensus 22 ~~~~~--~VLDlGCG~G~~~~~~~~~~~~~v~G--iD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 22 TKRGD--SVLDLGCGKGGDLLKYERAGIGEYYG--VDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CCTTC--EEEEETCTTTTTHHHHHHHTCSEEEE--EESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCcC--EEEEecccCcHHHHHHHHcCCCeEEE--ecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEE
Confidence 34555 899999999999999998875 6888 88889999988754 2 26788999877765 46789999
Q ss_pred Eecccccccc-chhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWL-DMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~-~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|.++++|+. +.+.+..++.++.|+|||||+|+++.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 9999997654 34556789999999999999999864
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=1.1e-13 Score=134.77 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=98.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----CC---ccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----GL---IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g~---i~~~~~d~~~Lpf~d~ 378 (467)
+.+.+.+++|+ +|||||||+|.++..++++ |..|+| +++|+.+++.++++ +. +.+...|...+ ++
T Consensus 44 ~~~~l~l~~g~--~VLDiGCG~G~~a~~~a~~~g~~v~g--i~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~ 116 (280)
T d2fk8a1 44 NLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDVNVIG--LTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AE 116 (280)
T ss_dssp HHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CC
T ss_pred HHHHcCCCCCC--EEEEecCCchHHHHHHHHhCceeEEE--ecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---cc
Confidence 33445678887 9999999999999999877 999999 77788887777543 33 44445554443 57
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC--------------------------------CC
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK--------------------------------KD 426 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------------------------------~~ 426 (467)
+||.|++..+++|+... .++.+++++.|+|||||.+++.+..... ..
T Consensus 117 ~fD~i~si~~~eh~~~~-~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS 195 (280)
T d2fk8a1 117 PVDRIVSIEAFEHFGHE-NYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 195 (280)
T ss_dssp CCSEEEEESCGGGTCGG-GHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred chhhhhHhhHHHHhhhh-hHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccc
Confidence 99999999999888754 3578999999999999999996532211 13
Q ss_pred HHHHHHHHHHcCceeeEEEE
Q 012235 427 LDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 427 ~~~~~~~i~~~Gf~~l~W~~ 446 (467)
...+.+.+++.||+...+..
T Consensus 196 ~~~l~~~~e~aGf~v~~~~~ 215 (280)
T d2fk8a1 196 TEMMVEHGEKAGFTVPEPLS 215 (280)
T ss_dssp HHHHHHHHHHTTCBCCCCEE
T ss_pred hHhhhhhHHhhccccceeee
Confidence 34677778888887776543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=1.5e-13 Score=134.27 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=102.1
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH----cCC---ccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL----RGL---IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~----rg~---i~~~~~d~~~Lpf~d~ 378 (467)
+.+.+++++|. +|||||||.|.++.++++. |++|+| +++|+..++.+.+ .+. +.+..+|...+ ++
T Consensus 54 ~~~~l~l~~G~--~VLDiGCG~G~~a~~~a~~~g~~v~g--it~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~---~~ 126 (285)
T d1kpga_ 54 ALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDVNVVG--LTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF---DE 126 (285)
T ss_dssp HHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---CC
T ss_pred HHHHcCCCCCC--EEEEecCcchHHHHHHHhcCCcceEE--EeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc---cc
Confidence 34456788887 9999999999999998876 999999 7777777666644 333 66777777665 47
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC--------------------------------CC
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK--------------------------------KD 426 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------------------------------~~ 426 (467)
+||.|++..+++|+.... .+.+++++.|+|||||.+++.++.... ..
T Consensus 127 ~fD~i~si~~~eh~~~~~-~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPs 205 (285)
T d1kpga_ 127 PVDRIVSIGAFEHFGHER-YDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 205 (285)
T ss_dssp CCSEEEEESCGGGTCTTT-HHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred cccceeeehhhhhcCchh-HHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCC
Confidence 899999999999986542 468999999999999999987664211 12
Q ss_pred HHHHHHHHHHcCceeeEEEEc
Q 012235 427 LDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 427 ~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
...+..++++.||+...|...
T Consensus 206 l~~~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 206 IPMVQECASANGFTVTRVQSL 226 (285)
T ss_dssp HHHHHHHHHTTTCEEEEEEEC
T ss_pred hhhHHHHHHHhchhhcccccc
Confidence 346667888899988877543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.48 E-value=5.6e-14 Score=136.26 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=82.5
Q ss_pred ceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
.+|||+|||+|.++..+++. +..|+| +|+++.+++.++++ + .+.+.++|+..++++ ++||+|++..+++
T Consensus 29 ~~ILDiGcG~G~~~~~la~~~~~~~~v~g--iD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l~ 105 (281)
T d2gh1a1 29 VHIVDYGCGYGYLGLVLMPLLPEGSKYTG--IDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLL 105 (281)
T ss_dssp CEEEEETCTTTHHHHHHTTTSCTTCEEEE--EECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCGG
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCCEEEE--EecchhHhhhhhccccccccccccccccccccccc-CCceEEEEehhhh
Confidence 38999999999999999875 578888 78889999888754 2 267889999999874 5799999999997
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|+.++ ..+++++.|+|||||.+++.++.
T Consensus 106 ~~~d~---~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 106 HMTTP---ETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp GCSSH---HHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCH---HHHHHHHHHHcCcCcEEEEEECC
Confidence 77666 58999999999999999987753
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=3.7e-13 Score=129.49 Aligned_cols=132 Identities=13% Similarity=0.184 Sum_probs=98.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cCC-ccEEEccCCCCccCCCccceEEecc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RGL-IPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg~-i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
.+++. +|||+|||+|.++..+++.|.+|+| +|+++.|++.+++ ++. +.+++++... .++.++||+|+++.
T Consensus 118 ~~~g~--~VLDiGcGsG~l~i~aa~~g~~V~g--vDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani 192 (254)
T d2nxca1 118 LRPGD--KVLDLGTGSGVLAIAAEKLGGKALG--VDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANL 192 (254)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEEC
T ss_pred cCccC--EEEEcccchhHHHHHHHhcCCEEEE--EECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhcc
Confidence 45666 8999999999999999999999988 6677788877764 333 5677777654 35578999999986
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeec
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEK 462 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqK 462 (467)
... . +..++.++.|+|||||+++++.+... +.+.+.+.+++.||+.+.-.. .++ |...+++|
T Consensus 193 ~~~-~-----l~~l~~~~~~~LkpGG~lilSgil~~--~~~~v~~~~~~~Gf~~~~~~~----~~~-Wv~l~~~r 254 (254)
T d2nxca1 193 YAE-L-----HAALAPRYREALVPGGRALLTGILKD--RAPLVREAMAGAGFRPLEEAA----EGE-WVLLAYGR 254 (254)
T ss_dssp CHH-H-----HHHHHHHHHHHEEEEEEEEEEEEEGG--GHHHHHHHHHHTTCEEEEEEE----ETT-EEEEEEEC
T ss_pred ccc-c-----HHHHHHHHHHhcCCCcEEEEEecchh--hHHHHHHHHHHCCCEEEEEEE----ECC-EEEEEEeC
Confidence 552 1 35788999999999999999876543 345788889999998765332 233 55556665
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.38 E-value=2.3e-12 Score=123.36 Aligned_cols=124 Identities=21% Similarity=0.115 Sum_probs=90.8
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHH----HcC---CccEEEccCCCCccCCCccceEEeccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIA----LRG---LIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~----~rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
.++|||||||+|.++..++++ +.++++ +|+ +.+++.++ +.+ .+.++.+|... +. +..||+|++..+
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~--~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~-p~~~D~v~~~~v 156 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTL--VEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL-PVTADVVLLSFV 156 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-SCCEEEEEEESC
T ss_pred CCEEEEECCCCCHHHHHHHHhhcCcEEEE--ecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cc-cccchhhhcccc
Confidence 448999999999999999998 456666 555 44555443 223 36677777654 33 456999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------------CHHHHHHHHHHcCceeeEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------------DLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------------~~~~~~~~i~~~Gf~~l~W 444 (467)
++||.+.. ...+|+++.++|||||.++|.++....+ ..++|.+++++.||+.++-
T Consensus 157 Lh~~~d~~-~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~ 235 (256)
T d1qzza2 157 LLNWSDED-ALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 235 (256)
T ss_dssp GGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred ccccCcHH-HHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEE
Confidence 97776553 4688999999999999999987643221 2357889999999988765
Q ss_pred EEc
Q 012235 445 AIS 447 (467)
Q Consensus 445 ~~~ 447 (467)
...
T Consensus 236 ~~~ 238 (256)
T d1qzza2 236 RTS 238 (256)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.37 E-value=7.7e-13 Score=120.43 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=97.4
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCC
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d 377 (467)
..+...+.+.+++ +|||+|||+|.++..+++.+.+|++ +|+++.+++.++++ + .+.++++|+...++..
T Consensus 23 ~~il~~l~~~~g~--~VLDiGcGsG~~s~~lA~~~~~V~a--vD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~ 98 (186)
T d1l3ia_ 23 CLIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVRRVYA--IDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (186)
T ss_dssp HHHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSSEEEE--EESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHhcCCCCCC--EEEEEECCeEcccccccccceEEEE--ecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc
Confidence 3455667788887 9999999999999999999889988 67788888877653 3 4788999988888888
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
..||.|++.....+ .+.++.++.+.|||||++++..... +......+.++..|+
T Consensus 99 ~~~D~v~~~~~~~~------~~~~~~~~~~~LkpgG~lvi~~~~~--e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 99 PDIDIAVVGGSGGE------LQEILRIIKDKLKPGGRIIVTAILL--ETKFEAMECLRDLGF 152 (186)
T ss_dssp CCEEEEEESCCTTC------HHHHHHHHHHTEEEEEEEEEEECBH--HHHHHHHHHHHHTTC
T ss_pred CCcCEEEEeCcccc------chHHHHHHHHHhCcCCEEEEEeecc--ccHHHHHHHHHHcCC
Confidence 99999999876632 2478999999999999998865432 223356677787776
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.37 E-value=1.3e-12 Score=119.43 Aligned_cols=107 Identities=13% Similarity=0.179 Sum_probs=83.2
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCCccCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~Lpf~d 377 (467)
.+.+.+...++. +|||+|||+|.++..+++.+..|++ +|+++.+++.+.++ + .+.+..+|... ++++
T Consensus 43 lLi~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~v~~--iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~ 117 (194)
T d1dusa_ 43 ILVENVVVDKDD--DILDLGCGYGVIGIALADEVKSTTM--ADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD 117 (194)
T ss_dssp HHHHHCCCCTTC--EEEEETCTTSHHHHHHGGGSSEEEE--EESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT
T ss_pred HHHHhCCcCCCC--eEEEEeecCChhHHHHHhhccccce--eeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhcc
Confidence 344555666665 9999999999999999999999998 56677777777542 2 26777888766 5678
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
++||+|+++.++++..+. .+.++.++.++|||||.+++..
T Consensus 118 ~~fD~Ii~~~p~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 118 RKYNKIITNPPIRAGKEV--LHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp SCEEEEEECCCSTTCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEEEcccEEecchh--hhhHHHHHHHhcCcCcEEEEEE
Confidence 999999999887433322 4688999999999999998854
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.37 E-value=3.5e-12 Score=120.75 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=110.4
Q ss_pred ccccccccCCcChHHHHHH---HhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----C
Q 012235 291 EKPKWVANRSVPVDFLISD---ILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----G 361 (467)
Q Consensus 291 e~~~W~~~~~~~~d~~I~~---lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g 361 (467)
+-+.|.- ........|.. .+.+++|. +|||+|||+|+++..+++.+ ..|+| +|+|+.|++.+..+ +
T Consensus 48 e~r~w~p-~rsklaA~i~~gl~~l~ikpG~--~VLDlGcGsG~~~~~la~~~~~g~V~a--VDiS~~~i~~a~~~a~~~~ 122 (230)
T d1g8sa_ 48 EYRIWNP-NKSKLAAAIIKGLKVMPIKRDS--KILYLGASAGTTPSHVADIADKGIVYA--IEYAPRIMRELLDACAERE 122 (230)
T ss_dssp EEEECCT-TTCHHHHHHHTTCCCCCCCTTC--EEEEESCCSSHHHHHHHHHTTTSEEEE--EESCHHHHHHHHHHTTTCT
T ss_pred eeeeECC-CccHHHHHHHhhHHhCCCCCCC--EEEEeCEEcCHHHHHHHHhCCCCEEEE--EeCcHHHHHHHHHHHhhhc
Confidence 4556755 33223333333 23467787 99999999999999999873 46777 88899998887653 4
Q ss_pred CccEEEccCCCC-ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---C----HHHHHHH
Q 012235 362 LIPLYVTLNQRL-PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---D----LDDYMYM 433 (467)
Q Consensus 362 ~i~~~~~d~~~L-pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---~----~~~~~~~ 433 (467)
++..+..+.... ++.+..+|++++...+.|+.+ .+.++.++.+.|||||.++++......+ . .++..+.
T Consensus 123 ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~---~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~ 199 (230)
T d1g8sa_ 123 NIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQ---AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEI 199 (230)
T ss_dssp TEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTH---HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHH
T ss_pred ccceEEEeeccCcccccccceeEEeeccccchHH---HHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHH
Confidence 455666665554 356677888777766644433 3688999999999999999976554322 1 2356678
Q ss_pred HHHcCceeeEEEEc-cCCCCceEEEEEee
Q 012235 434 FLQFRYKKHKWAIS-PKSKDEVYLSALLE 461 (467)
Q Consensus 434 i~~~Gf~~l~W~~~-~k~~devyl~avlq 461 (467)
++..||+.+.-... +..++...+.+++.
T Consensus 200 L~~aGF~ive~idL~py~~~H~~vvg~y~ 228 (230)
T d1g8sa_ 200 LEAGGFKIVDEVDIEPFEKDHVMFVGIWE 228 (230)
T ss_dssp HHHHTEEEEEEEECTTTSTTEEEEEEEEC
T ss_pred HHHcCCEEEEEecCCCCcCCeEEEEEEec
Confidence 88899988765433 33555555555553
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=1.1e-12 Score=127.08 Aligned_cols=109 Identities=19% Similarity=0.176 Sum_probs=80.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC------ccEEEccCCCCc--
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL------IPLYVTLNQRLP-- 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~------i~~~~~d~~~Lp-- 374 (467)
+..++...++. +|||+|||+|.++..|+++|..|+| +|+|+.|++.|+++ +. ..+...+...++
T Consensus 48 l~~~l~~~~~~--~vLD~GcG~G~~~~~la~~g~~v~g--vD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T d1xvaa_ 48 LLGLLRQHGCH--RVLDVACGTGVDSIMLVEEGFSVTS--VDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD 123 (292)
T ss_dssp HHHHHHHTTCC--EEEESSCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred HHHHhhhcCCC--EEEEecCCCcHHHHHHHHcCCeeee--ccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc
Confidence 44556555554 8999999999999999999999998 88999999888653 21 123333332221
Q ss_pred -cCCCccceEEecc-ccccccch----hhHHHHHHHHHhccCCCcEEEEEe
Q 012235 375 -FFDNTMDLIHTTG-FMDGWLDM----LLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 375 -f~d~sFDlVis~~-~L~h~~~~----~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
...++||+|+|.. ++.|+.+. ..+..+|+++.|+|||||.|++..
T Consensus 124 ~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 1357899999865 67676542 346789999999999999999964
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.1e-12 Score=123.93 Aligned_cols=120 Identities=15% Similarity=0.035 Sum_probs=85.6
Q ss_pred eEEEECCCccHHHHHHhhC------CCEEEEEecCCCHHHHHHHHHc--C--C---cc--EEEccCC------CCccCCC
Q 012235 320 IGLDFGVGTGTFAARMREQ------NVTIVSTALNLGAPFNEMIALR--G--L---IP--LYVTLNQ------RLPFFDN 378 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~------g~~V~gvdiDiS~~~l~~a~~r--g--~---i~--~~~~d~~------~Lpf~d~ 378 (467)
+|||||||+|.++..+++. +..+..+++|+|+.|++.+.++ . . +. +...+.+ ..+.+++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 6999999999998877653 4444445589999999988764 1 1 22 2333322 2246689
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC---------------------CCHHHHHHHHHHc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK---------------------KDLDDYMYMFLQF 437 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~---------------------~~~~~~~~~i~~~ 437 (467)
+||+|++..+++|+.+. ..++.++.++|+|||.+++..+.... -..+.+.+.+++.
T Consensus 123 ~fD~I~~~~~l~~~~d~---~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 199 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVKDI---PATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 199 (280)
T ss_dssp CEEEEEEESCGGGCSCH---HHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHH
T ss_pred ceeEEEEccceecCCCH---HHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHC
Confidence 99999999999666554 68999999999999999887643221 0234677788888
Q ss_pred Cceee
Q 012235 438 RYKKH 442 (467)
Q Consensus 438 Gf~~l 442 (467)
||.-.
T Consensus 200 G~~~~ 204 (280)
T d1jqea_ 200 GLKYE 204 (280)
T ss_dssp TCCEE
T ss_pred CCceE
Confidence 88543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=7.3e-12 Score=119.96 Aligned_cols=127 Identities=12% Similarity=0.038 Sum_probs=91.7
Q ss_pred ceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc--C---Cc-----------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR--G---LI----------------------------- 363 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r--g---~i----------------------------- 363 (467)
.+|||+|||+|.++...+.. ...|++ +|+|+.|++.+++. . ..
T Consensus 56 ~~vLDiGcG~g~~~~~~~~~~~~~v~~--~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 56 RTLIDIGSGPTVYQLLSACSHFEDITM--TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp SEEEEETCTTCCGGGTTGGGGCSEEEE--ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred cEEEEeccCCCHHHHHHhcccCCeEEE--EeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 48999999999887655544 567888 88999999888642 0 01
Q ss_pred --cEEEccCC------CCccCCCccceEEeccccccccc-hhhHHHHHHHHHhccCCCcEEEEEecccC-----------
Q 012235 364 --PLYVTLNQ------RLPFFDNTMDLIHTTGFMDGWLD-MLLLDFILFDWDRILRPGGLLWIDRFFCN----------- 423 (467)
Q Consensus 364 --~~~~~d~~------~Lpf~d~sFDlVis~~~L~h~~~-~~~l~~~L~el~RvLKPGG~LiI~~~~~~----------- 423 (467)
.....|.. ..+..+++||+|++.++++|... .+.+..+++++.++|||||+|++.+....
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~ 213 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 213 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccc
Confidence 11222322 22355678999999999976653 34578899999999999999999755332
Q ss_pred --CCCHHHHHHHHHHcCceeeEEEEc
Q 012235 424 --KKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 424 --~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
.-..+.+.+.++..||+.+.....
T Consensus 214 ~~~~t~e~v~~~l~~aGf~v~~~~~~ 239 (263)
T d2g72a1 214 VVPVSEEEVREALVRSGYKVRDLRTY 239 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 125668999999999987765543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.27 E-value=4e-11 Score=111.64 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=89.0
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----cCCccEEEccCCCCccCCCccceEE
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----RGLIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----rg~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.+++++ +|||+|||+|+.+..+++. ...|+| +|+++.|++.+.+ ++++.++.+++...+.+...+|.|.
T Consensus 52 l~lkpg~--~VLDlGcG~G~~~~~la~~v~~g~V~g--vDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 52 LKLRGDE--RVLYLGAASGTTVSHLADIVDEGIIYA--VEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCCSSC--EEEEETCTTSHHHHHHHHHTTTSEEEE--ECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCCCCC--EEEEeCCcCCHHHHHHHHhccCCeEEE--EeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEE
Confidence 4677888 9999999999999999986 347887 8899998887643 4668888899888776666665554
Q ss_pred ecc-ccccccchhhHHHHHHHHHhccCCCcEEEEEeccc---CCCCHH-HHHHHHH--HcCceeeEEE
Q 012235 385 TTG-FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC---NKKDLD-DYMYMFL--QFRYKKHKWA 445 (467)
Q Consensus 385 s~~-~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~---~~~~~~-~~~~~i~--~~Gf~~l~W~ 445 (467)
..+ .+.|+.+ ...++.++.|+|||||++++..... ...+.. .+.+..+ ..||+.+.-.
T Consensus 128 ~v~~~~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E~i 192 (209)
T d1nt2a_ 128 LIYQDIAQKNQ---IEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHG 192 (209)
T ss_dssp EEEECCCSTTH---HHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEecccChhh---HHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 332 2333333 3689999999999999999976432 122222 2322222 2478777644
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=9.2e-12 Score=116.14 Aligned_cols=100 Identities=22% Similarity=0.177 Sum_probs=79.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
.+.+.+++++++ +|||||||+|+++..|++. ...|++ +|+++.+++.++++ + .+.++++|....++.
T Consensus 66 ~~l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~--id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~ 141 (213)
T d1dl5a1 66 LFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVS--VEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (213)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEEE--eecchhhHHHhhhhHhhhcccccccccCchHHcccc
Confidence 355677899988 9999999999999999875 346777 67778888877653 2 366778888887777
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+++||+|++..++.+.+ .++.+.|||||.+++.
T Consensus 142 ~~~fD~I~~~~~~~~~p---------~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 142 FSPYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVP 174 (213)
T ss_dssp GCCEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEE
T ss_pred ccchhhhhhhccHHHhH---------HHHHHhcCCCcEEEEE
Confidence 88999999999985443 2456889999999883
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.21 E-value=1.5e-11 Score=114.38 Aligned_cols=97 Identities=15% Similarity=0.247 Sum_probs=78.1
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCc--cCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLP--FFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lp--f~d~sFDlVis~~~L 389 (467)
.|||||||+|.++..+|+. +..++| +|++..++..+.+ .+ ++.++.+|+..+. ++++++|.|+..+..
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~~~iG--iD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDINYIG--IELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred eEEEEEecCcHHHHHHHHhCCCCcEEE--eecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 7999999999999999988 466777 8888888877643 34 3788899988776 789999999998887
Q ss_pred ccccchhh------HHHHHHHHHhccCCCcEEEEEe
Q 012235 390 DGWLDMLL------LDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 390 ~h~~~~~~------l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|..... ...++.++.|+|||||.|++.+
T Consensus 110 -P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 -PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred -ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5544311 1379999999999999999965
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.21 E-value=1.4e-11 Score=118.96 Aligned_cols=122 Identities=19% Similarity=0.141 Sum_probs=94.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc---------CCccEEEccCCCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR---------GLIPLYVTLNQRL 373 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r---------g~i~~~~~d~~~L 373 (467)
+|...+++.+|. +|||+|||+|.++..|++. | -.|++ +|+++++++.|+++ ..+.+.++|....
T Consensus 87 ~Ii~~l~i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~V~~--~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 87 QIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVIS--YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHhCCCCCC--EEEecCcCCcHHHHHHHHhhCCCcEEEE--ecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 577888999998 9999999999999999986 3 46777 77888888888652 2367888999888
Q ss_pred ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH-HcCcee
Q 012235 374 PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL-QFRYKK 441 (467)
Q Consensus 374 pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~-~~Gf~~ 441 (467)
++++++||.|+. +..++ ..++.++.|+|||||.+++..+.. ++.....+.++ ..||..
T Consensus 163 ~~~~~~fDaV~l-----dlp~P---~~~l~~~~~~LkpGG~lv~~~P~i--~Qv~~~~~~l~~~~~f~~ 221 (264)
T d1i9ga_ 163 ELPDGSVDRAVL-----DMLAP---WEVLDAVSRLLVAGGVLMVYVATV--TQLSRIVEALRAKQCWTE 221 (264)
T ss_dssp CCCTTCEEEEEE-----ESSCG---GGGHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHHSSBCC
T ss_pred cccCCCcceEEE-----ecCCH---HHHHHHHHhccCCCCEEEEEeCcc--ChHHHHHHHHHHcCCeec
Confidence 899999999985 44555 368999999999999998855433 33445555554 556754
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=4.7e-12 Score=118.79 Aligned_cols=95 Identities=18% Similarity=0.097 Sum_probs=72.3
Q ss_pred eEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHcC-----CccEEEccCCC--CccCCCccceEEe-----c
Q 012235 320 IGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALRG-----LIPLYVTLNQR--LPFFDNTMDLIHT-----T 386 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~d~~~--Lpf~d~sFDlVis-----~ 386 (467)
+|||||||+|..+..+++.+ ..+++ +|+++.+++.++++. .+.++..++.. .++++++||.|+. .
T Consensus 56 ~VLdIGcG~G~~a~~~a~~~~~~v~~--id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~ 133 (229)
T d1zx0a1 56 RVLEVGFGMAIAASKVQEAPIDEHWI--IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS 133 (229)
T ss_dssp EEEEECCTTSHHHHHHHTSCEEEEEE--EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred eEEEeeccchHHHHHHHHcCCCeEEE--eCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccccc
Confidence 89999999999999999875 56777 788899999887652 14555555443 3567888998874 4
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+.|+.+. ..++.++.|+|||||.|++.+
T Consensus 134 ~~~~~~~~~---~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 134 EETWHTHQF---NFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp GGGTTTHHH---HHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccCH---HHHHHHHHHHcCCCcEEEEEe
Confidence 455455444 689999999999999998754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.20 E-value=1.6e-11 Score=117.61 Aligned_cols=122 Identities=12% Similarity=0.051 Sum_probs=90.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf 375 (467)
+|...+++++|+ +|||+|||+|.++..|++. +..|++ +|.++.+++.|.++ +.+.+.++|.... +
T Consensus 76 ~Ii~~l~i~pG~--rVLEiG~GsG~lt~~la~~v~~~g~V~~--vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~ 150 (250)
T d1yb2a1 76 YIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTV--VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-I 150 (250)
T ss_dssp -----CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEE--ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-C
T ss_pred HHHHHcCCCCcC--EEEEeeeeCcHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-c
Confidence 466677899998 9999999999999999975 357888 77888888888753 2377888887765 5
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
++++||.|+... .++ ..++.++.++|||||.+++..+.. ++.+...+.+++.||..+
T Consensus 151 ~~~~fD~V~ld~-----p~p---~~~l~~~~~~LKpGG~lv~~~P~i--~Qv~~~~~~l~~~gf~~i 207 (250)
T d1yb2a1 151 SDQMYDAVIADI-----PDP---WNHVQKIASMMKPGSVATFYLPNF--DQSEKTVLSLSASGMHHL 207 (250)
T ss_dssp CSCCEEEEEECC-----SCG---GGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHHHSGGGTEEEE
T ss_pred ccceeeeeeecC-----Cch---HHHHHHHHHhcCCCceEEEEeCCc--ChHHHHHHHHHHCCCcee
Confidence 578999998642 333 368999999999999998855432 334466677777888654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=2.2e-11 Score=120.21 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=77.7
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHH-HHHHHHHcC---CccEEEccCCCCccCCCccceEEec
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAP-FNEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~-~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
...++. +|||||||+|.++..+++.|. .|+++|.+.... +.+.+++.+ .+.+++++...+++++++||+|++.
T Consensus 35 ~~~~~~--~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se 112 (328)
T d1g6q1_ 35 DLFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISE 112 (328)
T ss_dssp HHHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred ccCCcC--EEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEE
Confidence 333555 899999999999999999975 788855542111 122223333 3778999999999999999999998
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
....+......++.++.++.|+|||||.++
T Consensus 113 ~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 113 WMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 777555555556788999999999999975
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4.5e-11 Score=116.84 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=79.0
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHH---HHHcC---CccEEEccCCCCccCCCccceE
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEM---IALRG---LIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~---a~~rg---~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
....++. +|||||||+|.++..+++.|. .|++ +|.++.+... +.+.+ .+.+++++..++++++++||+|
T Consensus 31 ~~~~~~~--~VLDiGcG~G~lsl~aa~~Ga~~V~a--id~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~I 106 (311)
T d2fyta1 31 PHIFKDK--VVLDVGCGTGILSMFAAKAGAKKVLG--VDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI 106 (311)
T ss_dssp GGGTTTC--EEEEETCTTSHHHHHHHHTTCSEEEE--EESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred cccCCcC--EEEEECCCCCHHHHHHHHcCCCEEEE--EeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEE
Confidence 3444555 899999999999999999985 7888 5555555432 23333 3788999999999989999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
++....++......++.++....++|||||.++-
T Consensus 107 vse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 107 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 9987775555544467788888999999999863
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=3.3e-11 Score=113.32 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=78.1
Q ss_pred HHHHHh--cCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-----------CCccEEEcc
Q 012235 306 LISDIL--AIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-----------GLIPLYVTL 369 (467)
Q Consensus 306 ~I~~lL--~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d 369 (467)
.+.++| .+++++ +|||||||+|+.+..|++. ...|++ +|.++++++.+.++ +.+.+..+|
T Consensus 65 ~~le~L~~~l~~g~--~VLdiG~GsGy~ta~la~l~~~~g~V~~--ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD 140 (224)
T d1i1na_ 65 YALELLFDQLHEGA--KALDVGSGSGILTACFARMVGCTGKVIG--IDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 140 (224)
T ss_dssp HHHHHTTTTSCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhCCCceEEE--EcCCHHHHHHHHHhccccCcccccccceEEEEee
Confidence 445555 567887 9999999999999888875 457888 67778887776432 236678899
Q ss_pred CCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 370 NQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 370 ~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+...+..+++||.|++..++.+.+ .++.+.|||||.+++.
T Consensus 141 ~~~~~~~~~~fD~I~~~~~~~~ip---------~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 141 GRMGYAEEAPYDAIHVGAAAPVVP---------QALIDQLKPGGRLILP 180 (224)
T ss_dssp GGGCCGGGCCEEEEEECSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred cccccchhhhhhhhhhhcchhhcC---------HHHHhhcCCCcEEEEE
Confidence 888888889999999999985432 3467899999999984
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=9.4e-11 Score=115.04 Aligned_cols=100 Identities=15% Similarity=0.250 Sum_probs=77.3
Q ss_pred CCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHH-HHHHHHcC---CccEEEccCCCCccCCCccceEEecccc
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPF-NEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~-l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
++. +|||||||+|.++..+++.| ..|+++|.+..... .+.+...+ .+.++.++..+++++.++||+|++....
T Consensus 33 ~~~--~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 33 KDK--VVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp TTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CcC--EEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 455 89999999999999999997 46888665432221 22233333 3789999999999999999999998777
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
++......++.++..+.|+|||||.++
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 555555557889999999999999986
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.11 E-value=1.1e-10 Score=108.41 Aligned_cols=97 Identities=21% Similarity=0.289 Sum_probs=76.8
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCc--cCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLP--FFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lp--f~d~sFDlVis~~~L 389 (467)
.|||||||+|.++..+|+. ...++| +|++..++..+.+ .+ ++.++.+|+..+. ++++++|.|++.+.-
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~~~iG--id~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDINYIG--IDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred eEEEEeccCCHHHHHHHHHCCCCceEE--EeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 7999999999999999988 566777 7777777766643 33 3788999988876 778999999988866
Q ss_pred ccccchhh------HHHHHHHHHhccCCCcEEEEEe
Q 012235 390 DGWLDMLL------LDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 390 ~h~~~~~~------l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.|..... ...++..+.|+|||||.|.+.+
T Consensus 112 -Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 -PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred -cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5554311 1478999999999999998854
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.11 E-value=4.4e-11 Score=112.77 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=79.2
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFD 381 (467)
.+.+.+++++++ +|||||||+|++++.|++.+.+|++ +|.++.+.+.+.++ .++.++++|...-....++||
T Consensus 61 ~ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~~V~a--iE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 61 FMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVS--VEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--EESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhhhcccc--eEEEecCCCCHHHHHHHHHhccccc--ccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 356778899988 9999999999999999999889999 66677777777653 347888888766444568899
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.|++..++.+.+ ..+.+.|||||++++-
T Consensus 137 ~Iiv~~a~~~ip---------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLL---------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEESSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred HHHhhcchhhhh---------HHHHHhcCCCCEEEEE
Confidence 999998885433 2456789999999883
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=6.6e-11 Score=117.14 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=80.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHc---------------CCccEEEcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALR---------------GLIPLYVTL 369 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~r---------------g~i~~~~~d 369 (467)
+.+.+.+++++ +|||+|||+|.++..++.. +. .++| +|+++.+++.+.+. +.+.++++|
T Consensus 143 ~~~~~~l~~~~--~vlD~GcG~G~~~~~~a~~~~~~~~~G--id~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 143 MIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYG--VEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHSCCCTTC--EEEEETCTTSHHHHHHHHHCCCSEEEE--EECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHcCCCCCC--EEEEcCCCCCHHHHHHHHHhCCCeEEE--EeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 44556677777 9999999999999988865 43 6888 77778777666421 247899999
Q ss_pred CCCCccCCCcc--ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 370 NQRLPFFDNTM--DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 370 ~~~Lpf~d~sF--DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+..+++.+..+ |+|+++. +.|+.+ +...+.++.|+|||||.+++...+.
T Consensus 219 ~~~~~~~~~~~~advi~~~~-~~f~~~---~~~~l~e~~r~LKpGg~iv~~~~~~ 269 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNN-FAFGPE---VDHQLKERFANMKEGGRIVSSKPFA 269 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECC-TTTCHH---HHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred ccccccccccCcceEEEEcc-eecchH---HHHHHHHHHHhCCCCcEEEEecccC
Confidence 99999877766 4566544 435443 3689999999999999998865444
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.06 E-value=2.6e-10 Score=109.97 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=91.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----CC---ccEEEccCCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----GL---IPLYVTLNQRLPF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g~---i~~~~~d~~~Lpf 375 (467)
+|...+++.++. +|||+|||+|.++..|++. +..|++ +|.++.+++.|.++ +. +.+...|... .+
T Consensus 94 ~Ii~~l~i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~V~~--vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~ 168 (266)
T d1o54a_ 94 FIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFA--YEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GF 168 (266)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEE--ECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CC
T ss_pred HHHHhhCCCCCC--EEEECCCCCCHHHHHHHHHhCCCcEEEE--EeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cc
Confidence 577888999998 9999999999999999875 457888 88888888887653 32 4455555432 35
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
....||.|+. +..++ ..++.++.++|||||.+++..+.. ++.+...+.++..||..+.
T Consensus 169 ~~~~~D~V~~-----d~p~p---~~~l~~~~~~LKpGG~lv~~~P~~--~Qv~~~~~~l~~~gF~~i~ 226 (266)
T d1o54a_ 169 DEKDVDALFL-----DVPDP---WNYIDKCWEALKGGGRFATVCPTT--NQVQETLKKLQELPFIRIE 226 (266)
T ss_dssp SCCSEEEEEE-----CCSCG---GGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHSSEEEEE
T ss_pred cccceeeeEe-----cCCCH---HHHHHHHHhhcCCCCEEEEEeCcc--cHHHHHHHHHHHCCceeEE
Confidence 5678998864 44555 478999999999999999865432 3345677788888986443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.04 E-value=1.4e-09 Score=102.40 Aligned_cols=146 Identities=15% Similarity=0.122 Sum_probs=95.6
Q ss_pred cccccccccCCcChHHHHHHH---hcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc---
Q 012235 290 KEKPKWVANRSVPVDFLISDI---LAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR--- 360 (467)
Q Consensus 290 ~e~~~W~~~~~~~~d~~I~~l---L~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r--- 360 (467)
.+-+.|.- ........|..- +.+++|+ +|||+|||+|+++..|++. +..|++ +|+++.+++.+.++
T Consensus 46 ~e~R~w~p-~rSKlaa~i~~~l~~l~i~pG~--~VLDlGaGsG~~t~~la~~VG~~G~V~a--VD~s~~~l~~a~~~a~~ 120 (227)
T d1g8aa_ 46 EEYRIWNP-NRSKLGAAIMNGLKNFPIKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFG--IEFSPRVLRELVPIVEE 120 (227)
T ss_dssp EEEEECCT-TTCHHHHHHHTTCCCCCCCTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHSS
T ss_pred eeEEEECC-CccHHHHHHHccccccccCCCC--EEEEeccCCCHHHHHHHHHhCCCCEEEE--EeCcHHHHHHHHHHHHh
Confidence 35667754 333333344332 3577888 9999999999999999987 356787 78888888877543
Q ss_pred -CCccEEEccCCC---CccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC---CCHHHH---
Q 012235 361 -GLIPLYVTLNQR---LPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK---KDLDDY--- 430 (467)
Q Consensus 361 -g~i~~~~~d~~~---Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~---~~~~~~--- 430 (467)
+.+..+..+... ++.....+|+|++... |..+ ...++.++.+.|||||.++++...... ...+..
T Consensus 121 ~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~--~~~~---~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~ 195 (227)
T d1g8aa_ 121 RRNIVPILGDATKPEEYRALVPKVDVIFEDVA--QPTQ---AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFRE 195 (227)
T ss_dssp CTTEEEEECCTTCGGGGTTTCCCEEEEEECCC--STTH---HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHH
T ss_pred cCCceEEEEECCCcccccccccceEEEEEEcc--ccch---HHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHH
Confidence 445566666543 3344567898887543 2222 357999999999999999997654322 122222
Q ss_pred HHHHHHcCceeeEEE
Q 012235 431 MYMFLQFRYKKHKWA 445 (467)
Q Consensus 431 ~~~i~~~Gf~~l~W~ 445 (467)
.+.+...||+.+.-.
T Consensus 196 v~~l~~~gf~iie~i 210 (227)
T d1g8aa_ 196 VERELSEYFEVIERL 210 (227)
T ss_dssp HHHHHHTTSEEEEEE
T ss_pred HHHHHHcCCEEEEEE
Confidence 223344588877543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.02 E-value=2.2e-10 Score=109.04 Aligned_cols=124 Identities=16% Similarity=0.085 Sum_probs=91.8
Q ss_pred CCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 317 ETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 317 ~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
..++|||||||+|.++..++++...+.++..|+ +..++.+.....+.++.+|..+ +.+ ..|+++...++++|.+++
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~de~ 156 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSDEK 156 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCHHH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEecCCccc-ccc--cceEEEEehhhhhCCHHH
Confidence 356999999999999999999854444444665 2333333333458888888754 333 359999999998887654
Q ss_pred hHHHHHHHHHhccCCCcEEEEEecccCCC--------------------------CHHHHHHHHHHcCceeeEEE
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFCNKK--------------------------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
...+|+++.+.|+|||.++|.+...+.+ ..++|.+++++.||+.++-.
T Consensus 157 -~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~ 230 (244)
T d1fp1d2 157 -CIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA 230 (244)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred -HHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEE
Confidence 5689999999999999999988654321 13488899999999988754
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=5.6e-10 Score=110.50 Aligned_cols=123 Identities=13% Similarity=0.172 Sum_probs=86.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-----------------CCccE
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-----------------GLIPL 365 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-----------------g~i~~ 365 (467)
+|...+++.+|+ +|||+|||+|.++..|++. +..|++ +|+++.+++.|+++ .++.+
T Consensus 89 ~Il~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V~t--~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~ 164 (324)
T d2b25a1 89 MILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVIS--FEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 164 (324)
T ss_dssp HHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEE--EESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHhCCCCCC--EEEEecccccHHHHHHHHHhCCCcEEEE--ecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence 577889999998 9999999999999999986 347888 67778888777542 23678
Q ss_pred EEccCCCCc--cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH--cCcee
Q 012235 366 YVTLNQRLP--FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ--FRYKK 441 (467)
Q Consensus 366 ~~~d~~~Lp--f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~--~Gf~~ 441 (467)
.++|..... +.+.+||.|+.. ++++ ..++.++.++|||||.|++..+.. ++.....+.++. .||..
T Consensus 165 ~~~di~~~~~~~~~~~fD~V~LD-----~p~P---~~~l~~~~~~LKpGG~lv~~~P~i--~Qv~~~~~~l~~~~~~f~~ 234 (324)
T d2b25a1 165 IHKDISGATEDIKSLTFDAVALD-----MLNP---HVTLPVFYPHLKHGGVCAVYVVNI--TQVIELLDGIRTCELALSC 234 (324)
T ss_dssp EESCTTCCC-------EEEEEEC-----SSST---TTTHHHHGGGEEEEEEEEEEESSH--HHHHHHHHHHHHHTCCEEE
T ss_pred EecchhhcccccCCCCcceEeec-----CcCH---HHHHHHHHHhccCCCEEEEEeCCH--HHHHHHHHHHHHcCCCcee
Confidence 888876653 456789999863 2333 258999999999999998855433 234455555653 35644
Q ss_pred e
Q 012235 442 H 442 (467)
Q Consensus 442 l 442 (467)
+
T Consensus 235 i 235 (324)
T d2b25a1 235 E 235 (324)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=2.9e-09 Score=102.96 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=94.2
Q ss_pred hHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc
Q 012235 303 VDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP 374 (467)
Q Consensus 303 ~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp 374 (467)
.+..++..+........+|||+|||+|..+..++.. ...|++ +|+|+.+++.|+++ + .+.++++|... +
T Consensus 94 TE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~a--vDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~ 170 (274)
T d2b3ta1 94 TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIA--VDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-A 170 (274)
T ss_dssp HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEE--ECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-G
T ss_pred hhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeee--ccchhHHHhHHHHHHHHhCcccceeeeccccc-c
Confidence 344444444422222337999999999999999876 456666 88889888887653 2 37788888655 4
Q ss_pred cCCCccceEEeccccccc------------cc----------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHH
Q 012235 375 FFDNTMDLIHTTGFMDGW------------LD----------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMY 432 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~------------~~----------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~ 432 (467)
+++++||+|+|+-....- .+ ...++.++.++.+.|+|||.+++.. ..+..+.+.+
T Consensus 171 ~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi---g~~q~~~v~~ 247 (274)
T d2b3ta1 171 LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH---GWQQGEAVRQ 247 (274)
T ss_dssp GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC---CSSCHHHHHH
T ss_pred cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE---CchHHHHHHH
Confidence 557799999998544211 00 1224578899999999999998843 2234457888
Q ss_pred HHHHcCceeeEE
Q 012235 433 MFLQFRYKKHKW 444 (467)
Q Consensus 433 ~i~~~Gf~~l~W 444 (467)
++++.||..+.-
T Consensus 248 ~l~~~gf~~i~~ 259 (274)
T d2b3ta1 248 AFILAGYHDVET 259 (274)
T ss_dssp HHHHTTCTTCCE
T ss_pred HHHHCCCCeEEE
Confidence 899999976643
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.86 E-value=2.8e-09 Score=99.52 Aligned_cols=100 Identities=21% Similarity=0.186 Sum_probs=76.9
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCCccCC
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~Lpf~d 377 (467)
..+.+.+++++++ +|||||||+|+.++.|++. |..|++ ++..+.+.+.+.+ .+ ++.++++|...-....
T Consensus 68 a~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V~~--ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~ 143 (215)
T d1jg1a_ 68 AIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYT--IERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 143 (215)
T ss_dssp HHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEE--EESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHhhccCccc--eEEEecCCCChhHHHHHHhhCceeEE--EeccHHHHHHHHHHHHHcCCceeEEEECccccCCccc
Confidence 3466778899988 9999999999999999976 767888 4555666665543 23 3778899987766668
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+.||.|++..++.+.+. .+...|||||++++
T Consensus 144 ~pfD~Iiv~~a~~~ip~---------~l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 144 APYDVIIVTAGAPKIPE---------PLIEQLKIGGKLII 174 (215)
T ss_dssp CCEEEEEECSBBSSCCH---------HHHHTEEEEEEEEE
T ss_pred CcceeEEeecccccCCH---------HHHHhcCCCCEEEE
Confidence 89999999998854332 24567999999987
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.84 E-value=3.5e-09 Score=100.46 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=90.6
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
.++|||||||+|.++..++++ +.+++. .|. +..++.+.....+.++.+|... +. ..+|+++...++++|.++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v--~Dl-p~vi~~~~~~~rv~~~~gD~f~-~~--p~aD~~~l~~vLHdw~d~ 154 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIV--FDR-PQVVENLSGSNNLTYVGGDMFT-SI--PNADAVLLKYILHNWTDK 154 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCBTTEEEEECCTTT-CC--CCCSEEEEESCGGGSCHH
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEE--ecC-HHHHHhCcccCceEEEecCccc-CC--CCCcEEEEEeecccCChH
Confidence 458999999999999999988 455555 554 3444444445568899999765 33 257999999999888776
Q ss_pred hhHHHHHHHHHhccCCC---cEEEEEecccCCC-------------------------CHHHHHHHHHHcCceeeEE
Q 012235 396 LLLDFILFDWDRILRPG---GLLWIDRFFCNKK-------------------------DLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPG---G~LiI~~~~~~~~-------------------------~~~~~~~~i~~~Gf~~l~W 444 (467)
. ...+|+++.+.|+|| |.++|.+...+.. ..++|.+++++.||+.++-
T Consensus 155 ~-~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i 230 (244)
T d1fp2a2 155 D-CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKI 230 (244)
T ss_dssp H-HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred H-HHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEE
Confidence 4 468999999999999 7788876543221 2358999999999988764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.84 E-value=2.1e-09 Score=100.88 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=75.5
Q ss_pred HHHHHh--cCCCCCCceEEEECCCccHHHHHHhhC----C----CEEEEEecCCCHHHHHHHHHc-----------CCcc
Q 012235 306 LISDIL--AIKPGETRIGLDFGVGTGTFAARMREQ----N----VTIVSTALNLGAPFNEMIALR-----------GLIP 364 (467)
Q Consensus 306 ~I~~lL--~l~~g~~r~VLDIGCGtG~~a~~La~~----g----~~V~gvdiDiS~~~l~~a~~r-----------g~i~ 364 (467)
.+.+.| .+++++ +|||||||+|++++.|++. | .+|++ +|..+++.+.+.++ .++.
T Consensus 69 ~~l~~L~~~l~~g~--~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~--iE~~~~l~~~a~~~l~~~~~~~~~~~nv~ 144 (223)
T d1r18a_ 69 FALEYLRDHLKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVG--IEHQAELVRRSKANLNTDDRSMLDSGQLL 144 (223)
T ss_dssp HHHHHTTTTCCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEE--EESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhhhccCCcccEEEE--EecCHHHHHHHHHhhhhcchhhcCccEEE
Confidence 345555 577887 9999999999999888765 3 37888 56667776666432 3477
Q ss_pred EEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 365 LYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 365 ~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+.++|......+.+.||.|++..++.+.+ ..+.+.|||||++++.
T Consensus 145 ~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p---------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 145 IVEGDGRKGYPPNAPYNAIHVGAAAPDTP---------TELINQLASGGRLIVP 189 (223)
T ss_dssp EEESCGGGCCGGGCSEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred EEecccccccccccceeeEEEEeechhch---------HHHHHhcCCCcEEEEE
Confidence 88999887766778999999999984333 2467899999999873
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=5.1e-09 Score=106.39 Aligned_cols=108 Identities=12% Similarity=0.066 Sum_probs=73.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcC---------------CccE-EEc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRG---------------LIPL-YVT 368 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg---------------~i~~-~~~ 368 (467)
+.+.+.+++++ ++||||||+|..+..++.. +. .++| +|+++.+++.|.++. .+.+ ..+
T Consensus 208 Il~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~G--IDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 208 VYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFG--CEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEE--EECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEEE--EeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 44556788888 9999999999999999877 54 7888 788888887775421 1122 223
Q ss_pred cCCCCccCC---CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 369 LNQRLPFFD---NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 369 d~~~Lpf~d---~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+....++.+ ...|+|+++... |..+ +...+.++.|+|||||.++..+.+.
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~-f~~~---l~~~L~ei~r~LKPGGrIVs~~~~~ 336 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFL-FDED---LNKKVEKILQTAKVGCKIISLKSLR 336 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTT-CCHH---HHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred chhhccccccccccceEEEEeccc-CchH---HHHHHHHHHHhcCCCcEEEEecccC
Confidence 333322222 346777765433 3332 4789999999999999998865444
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.71 E-value=8.2e-09 Score=97.53 Aligned_cols=121 Identities=12% Similarity=0.042 Sum_probs=87.6
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
.++|||||||+|.++..++++ +.+++. .|+.. .++.+.....+.++.+|... +.+. .|.++...++++|.+.
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v--~Dlp~-vi~~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~ 155 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGIN--FDLPH-VIEDAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDE 155 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEE--EECTT-TTTTCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEE--cccHH-hhhhcccCCceEEecccccc-cCCC--cceEEEEEEeecCCHH
Confidence 568999999999999999998 556666 44432 23333334457788888654 3333 4777888899777655
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CHHHHHHHHHHcCceeeEEE
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
. ...+|+++.+.|+|||.++|.+...... ..++|.+++++.||+.++-.
T Consensus 156 ~-~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~ 231 (243)
T d1kyza2 156 H-CLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH 231 (243)
T ss_dssp H-HHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEE
T ss_pred H-HHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEE
Confidence 4 5789999999999999999976543211 13478899999999888754
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.65 E-value=3.7e-08 Score=94.19 Aligned_cols=117 Identities=14% Similarity=0.196 Sum_probs=85.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
++++. +|||+|||+|.++..++++| ..|++ +|+++.+++.+.+ .+ .+.++++|+..++. .+.||.|+
T Consensus 105 ~~~g~--~VlD~~aG~G~~~l~~a~~~~~~V~a--vd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii 179 (260)
T d2frna1 105 AKPDE--LVVDMFAGIGHLSLPIAVYGKAKVIA--IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL 179 (260)
T ss_dssp CCTTC--EEEETTCTTTTTHHHHHHHTCCEEEE--ECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred cCCcc--EEEECcceEcHHHHHHHHhCCcEEEE--ecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEE
Confidence 45676 99999999999999999886 58888 7777777776653 23 37888999888764 57899999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC----CCHHHHHHHHHHcCcee
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----KDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----~~~~~~~~~i~~~Gf~~ 441 (467)
++.... . ..++.++.++|+|||.+.+..+.... +..+.+.+.....|++.
T Consensus 180 ~~~p~~--~-----~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v 233 (260)
T d2frna1 180 MGYVVR--T-----HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 233 (260)
T ss_dssp ECCCSS--G-----GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred ECCCCc--h-----HHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCce
Confidence 865431 1 35778889999999998765443322 22345666777778854
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.65 E-value=2.4e-08 Score=98.03 Aligned_cols=118 Identities=16% Similarity=0.049 Sum_probs=81.7
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCC----CccCCCccc
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQR----LPFFDNTMD 381 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~----Lpf~d~sFD 381 (467)
....+. +|||++||+|.++..++..+..|++ +|+++.+++.++++ +. +.++++|+.+ ++...++||
T Consensus 142 ~~~~g~--rVLDl~~gtG~~s~~~a~g~~~V~~--vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 142 ERFRGE--RALDVFSYAGGFALHLALGFREVVA--VDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp GGCCEE--EEEEETCTTTHHHHHHHHHEEEEEE--EESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred HHhCCC--eeeccCCCCcHHHHHHHhcCCcEEe--ecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCC
Confidence 333454 8999999999999999877778888 77888888877643 33 6788888654 344567999
Q ss_pred eEEecccccc------ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHH
Q 012235 382 LIHTTGFMDG------WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMF 434 (467)
Q Consensus 382 lVis~~~L~h------~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i 434 (467)
+|++...-.. .........++..+.++|||||.|++.+.... -+.+.+.+++
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~-~~~~~f~~~v 275 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH-MTEPLFYAMV 275 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT-SCHHHHHHHH
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-cCHHHHHHHH
Confidence 9998653211 11122235688899999999999988765332 2333444444
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.61 E-value=5.6e-08 Score=95.50 Aligned_cols=120 Identities=17% Similarity=0.142 Sum_probs=83.2
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cCC---ccEEEccCCC----CccCCCcc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RGL---IPLYVTLNQR----LPFFDNTM 380 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg~---i~~~~~d~~~----Lpf~d~sF 380 (467)
++++. +|||+|||+|.++..++..|. +|++ +|+++.+++.+.+ .|. +.++++|+.+ ++....+|
T Consensus 143 ~~~g~--~VLDl~~g~G~~si~~a~~ga~~V~~--vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 143 VQPGD--RVLDVFTYTGGFAIHAAIAGADEVIG--IDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CCTTC--EEEETTCTTTHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCC--eeecccCcccchhhhhhhcCCcEEEe--ecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCC
Confidence 34566 899999999999999998875 6888 7788888877754 333 5678888654 33456899
Q ss_pred ceEEeccccccccc------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc
Q 012235 381 DLIHTTGFMDGWLD------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF 437 (467)
Q Consensus 381 DlVis~~~L~h~~~------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~ 437 (467)
|+|++...-..-.. ......++..+.++|+|||.|++++.... -+.+.+.+++.+.
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~-~~~~~f~~~v~~a 280 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH-VDLQMFKDMIIAA 280 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT-SCHHHHHHHHHHH
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc-CCHHHHHHHHHHH
Confidence 99998654311110 11235678889999999999998764432 2344666655443
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.56 E-value=8.8e-08 Score=87.61 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=90.3
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCc----
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLP---- 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lp---- 374 (467)
.+.+++...+++ ++||++||+|.++..++++ +..|++ +|..+.|++.+.++ ..+.+++++...+.
T Consensus 14 evi~~l~~~~~~--~~lD~t~G~Gghs~~il~~~~~~~vi~--~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 14 EVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIG--IDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp HHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHhhCCCCCC--EEEEecCCCcHHHHHHHhcCCCCeEEE--eechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence 345667777777 9999999999999999987 567877 67778899888764 23778888776653
Q ss_pred -cCCCccceEEeccccccc------cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH
Q 012235 375 -FFDNTMDLIHTTGFMDGW------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 375 -f~d~sFDlVis~~~L~h~------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
+..++||.|+....++.+ ..-......+..+.++|+|||.+++.+|...++ ..+.+.+..
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Ed--r~vk~~f~~ 156 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLED--RIVKETFRN 156 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHH--HHHHHHHHH
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHH--HHHHHHHhh
Confidence 345789999987655321 112224678999999999999999988765432 234444444
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.56 E-value=1.7e-07 Score=85.27 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=64.3
Q ss_pred ceEEEECCCccH----HHHHHhhC----C--CEEEEEecCCCHHHHHHHHHc--------CC------------------
Q 012235 319 RIGLDFGVGTGT----FAARMREQ----N--VTIVSTALNLGAPFNEMIALR--------GL------------------ 362 (467)
Q Consensus 319 r~VLDIGCGtG~----~a~~La~~----g--~~V~gvdiDiS~~~l~~a~~r--------g~------------------ 362 (467)
-+|+++|||+|. ++..+.+. + +++++ .|+++.+++.|.+. +.
T Consensus 26 lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~a--tDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 26 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFA--SDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEE--EESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred eEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEe--ecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 378999999995 34444432 2 35666 66778888877531 00
Q ss_pred -----------ccEEEccCCC-CccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 363 -----------IPLYVTLNQR-LPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 363 -----------i~~~~~d~~~-Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+.+...+... .+.+.+.||+|+|..+|.++. +...+.++..+++.|+|||+|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~-~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC-HHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1112222111 223457899999999995544 445689999999999999999983
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.52 E-value=2e-07 Score=91.27 Aligned_cols=120 Identities=13% Similarity=0.013 Sum_probs=86.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCC----ccCCCcc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRL----PFFDNTM 380 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~L----pf~d~sF 380 (467)
...+. +|||++||+|.++..++..|..|++ +|.|+.+++.++++ + .+.++++|+..+ ....+.|
T Consensus 130 ~~~~~--rVLdlf~~tG~~sl~aa~~GA~V~~--VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~f 205 (309)
T d2igta1 130 ADRPL--KVLNLFGYTGVASLVAAAAGAEVTH--VDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTY 205 (309)
T ss_dssp SSSCC--EEEEETCTTCHHHHHHHHTTCEEEE--ECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred ccCCC--eEEEecCCCcHHHHHHHhCCCeEEE--EeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCC
Confidence 44444 8999999999999999999999888 88899998888652 3 267888886543 2345789
Q ss_pred ceEEeccccc-------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH
Q 012235 381 DLIHTTGFMD-------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 381 DlVis~~~L~-------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
|+|++.-.-. .|.-...+..++..+.++|+|||.+++.+.....-+...+.+++..
T Consensus 206 D~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~ 268 (309)
T d2igta1 206 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRE 268 (309)
T ss_dssp SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999853311 2222333456777888999999988887766655555566666554
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.52 E-value=8.8e-08 Score=83.83 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=67.9
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-ccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-PFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-pf~d~sFDlVis~~~L~ 390 (467)
+|||+|||+|.++...+.+|. .|++ +|.++.+++.+.+. + .+.++++|+..+ +...++||+|++.....
T Consensus 17 ~vlDl~~GtG~~~iea~~rga~~v~~--ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy~ 94 (152)
T d2esra1 17 RVLDLFAGSGGLAIEAVSRGMSAAVL--VEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA 94 (152)
T ss_dssp EEEEETCTTCHHHHHHHHTTCCEEEE--ECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred eEEEcCCccCHHHHHHHHhCcceeee--ehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhhc
Confidence 899999999999999998975 6777 66777777666542 2 267888887653 45678999999975542
Q ss_pred cccchhhHHHHHHHH--HhccCCCcEEEEEe
Q 012235 391 GWLDMLLLDFILFDW--DRILRPGGLLWIDR 419 (467)
Q Consensus 391 h~~~~~~l~~~L~el--~RvLKPGG~LiI~~ 419 (467)
. ......+..+ .++|+|||.+++.+
T Consensus 95 -~---~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 95 -K---ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp -H---HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -c---chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 1 1123455544 36799999998854
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=1.5e-06 Score=78.29 Aligned_cols=145 Identities=20% Similarity=0.212 Sum_probs=97.0
Q ss_pred HHHHhc-CCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------
Q 012235 307 ISDILA-IKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------- 374 (467)
Q Consensus 307 I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------- 374 (467)
|++-.. ++++. +|||+||++|.|+..+.++ ...++++|+..-. .-..+.++.++.....
T Consensus 13 I~~k~~l~k~~~--~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-------~i~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T d1ej0a_ 13 IQQSDKLFKPGM--TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-------PIVGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp HHHHHCCCCTTC--EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-------CCTTEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHhCccCCCC--eEEEEeccCCcceEEEEeeccccceEEEeeccccc-------ccCCceEeecccccchhhhhhhhh
Confidence 444444 45555 8999999999999998876 3567886553211 1122557777765432
Q ss_pred cCCCccceEEecccccc--------ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEE
Q 012235 375 FFDNTMDLIHTTGFMDG--------WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h--------~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
...+.+|+|+|..+..- ...-......+.-+.++||+||.|++-.|-. .+...+...++.. |..++...
T Consensus 84 ~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g--~~~~~l~~~l~~~-F~~V~~~K 160 (180)
T d1ej0a_ 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSL-FTKVKVRK 160 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS--TTHHHHHHHHHHH-EEEEEEEC
T ss_pred ccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC--ccHHHHHHHHHhh-cCEEEEEC
Confidence 23567999999877621 1111222356667789999999999977653 3455788888887 88887643
Q ss_pred ccC---CCCceEEEEEeecC
Q 012235 447 SPK---SKDEVYLSALLEKP 463 (467)
Q Consensus 447 ~~k---~~devyl~avlqKP 463 (467)
..- ...|.|+.+.=-||
T Consensus 161 P~aSR~~SsE~Ylv~~g~Kp 180 (180)
T d1ej0a_ 161 PDSSRARSREVYIVATGRKP 180 (180)
T ss_dssp CTTSCTTCCEEEEEEEEECC
T ss_pred CCCcccCCceEEEEEecCCC
Confidence 322 56789999887777
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.44 E-value=2.2e-07 Score=86.13 Aligned_cols=111 Identities=19% Similarity=0.375 Sum_probs=76.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcC---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRG---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg---~i~~~~~d~~~L-p 374 (467)
.+..++...... +|||+|||+|..+..|++. +.++++ +|.++.+.+.+. ..| .+.++.+++... +
T Consensus 47 lL~~lv~~~kpk--~ILEiGt~~G~Sti~la~al~~~g~v~s--id~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~ 122 (214)
T d2cl5a1 47 IMDAVIREYSPS--LVLELGAYCGYSAVRMARLLQPGARLLT--MEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIP 122 (214)
T ss_dssp HHHHHHHHHCCS--EEEEECCTTSHHHHHHHTTCCTTCEEEE--EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred HHHHHHHhhCCC--EEEEEccCchhHHHHHHHhCCCccEEEE--EeccHHHHHHHHHHHHHcCCCccceeeecccccccc
Confidence 444455433333 8999999999999999875 678888 555566666554 334 378899886542 2
Q ss_pred -----cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 375 -----FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 375 -----f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+..++||+|+....-..+. ....+.+..++|||||.+++++..++.
T Consensus 123 ~l~~~~~~~~~D~ifiD~~~~~~~----~~~~l~~~~~lLkpGGvIv~Ddvl~~g 173 (214)
T d2cl5a1 123 QLKKKYDVDTLDMVFLDHWKDRYL----PDTLLLEKCGLLRKGTVLLADNVIVPG 173 (214)
T ss_dssp GHHHHSCCCCEEEEEECSCGGGHH----HHHHHHHHTTCEEEEEEEEESCCCCCC
T ss_pred chhhcccccccceeeecccccccc----cHHHHHHHhCccCCCcEEEEeCcCCCC
Confidence 3457899999764332111 124577888999999999998776654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.42 E-value=3e-07 Score=82.13 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=67.1
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCC----CccCCCccceE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQR----LPFFDNTMDLI 383 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~----Lpf~d~sFDlV 383 (467)
+..+. +|||+|||+|.++..++.+|..+++ +|.++.+++.++++ +. ..+...+... ......+||+|
T Consensus 39 ~~~g~--~vLDl~~G~G~~~i~a~~~ga~vv~--vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~I 114 (171)
T d1ws6a1 39 YPRRG--RFLDPFAGSGAVGLEAASEGWEAVL--VEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp CTTCC--EEEEETCSSCHHHHHHHHTTCEEEE--ECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred ccCCC--eEEEeccccchhhhhhhhccchhhh--cccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCcccee
Confidence 44555 8999999999999999999999887 77788887776542 32 3344444332 12446789999
Q ss_pred EeccccccccchhhHHHHHHHH--HhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDW--DRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el--~RvLKPGG~LiI~~ 419 (467)
++.-.. +.... ..+.++ ..+|+|||.+++.+
T Consensus 115 f~DPPY-~~~~~----~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 115 FMAPPY-AMDLA----ALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp EECCCT-TSCTT----HHHHHHHHHTCEEEEEEEEEEE
T ss_pred EEcccc-ccCHH----HHHHHHHHcCCcCCCeEEEEEe
Confidence 997654 33222 233333 35899999988854
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=2e-06 Score=81.21 Aligned_cols=125 Identities=11% Similarity=0.001 Sum_probs=84.9
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC------ccCCCccceE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL------PFFDNTMDLI 383 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L------pf~d~sFDlV 383 (467)
.++||+|||+|..+..|+.+ +..++| +|+++.+++.|+++ + .+.+++.+.... ...++.||+|
T Consensus 63 ~~~LDiGtGsg~I~~~l~~~~~~~~~~~--~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 63 RRGIDIGTGASCIYPLLGATLNGWYFLA--TEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ceEEEeCCCchHHHHHHHHhCCCccccc--eecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 47999999999999999887 788888 67778888877643 2 245555433221 1235689999
Q ss_pred Eeccccccccc--------------------------------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHH
Q 012235 384 HTTGFMDGWLD--------------------------------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYM 431 (467)
Q Consensus 384 is~~~L~h~~~--------------------------------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~ 431 (467)
+|+-....-.+ ..-+..++.+..+.++..|++... ....+..+.+.
T Consensus 141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~--ig~~~~l~~i~ 218 (250)
T d2h00a1 141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCM--LGKKCSLAPLK 218 (250)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEE--ESSTTSHHHHH
T ss_pred EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEE--ecchhhHHHHH
Confidence 99977642110 001345677888889999976542 23345666788
Q ss_pred HHHHHcCceeeEEEEc
Q 012235 432 YMFLQFRYKKHKWAIS 447 (467)
Q Consensus 432 ~~i~~~Gf~~l~W~~~ 447 (467)
+.+++.|+..+++.--
T Consensus 219 ~~L~~~g~~~i~~ie~ 234 (250)
T d2h00a1 219 EELRIQGVPKVTYTEF 234 (250)
T ss_dssp HHHHHTTCSEEEEEEE
T ss_pred HHHHHcCCCeEEEEEe
Confidence 8999999987766533
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.30 E-value=5.1e-07 Score=82.80 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=53.8
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
+|||+|||+|.++..++..|. .|++ +|+++.+++.++++- .+.++++|+..+ ++.||+|+++-.+
T Consensus 51 ~VLDlGcGtG~l~i~a~~~ga~~V~~--vDid~~a~~~ar~N~~~~~~~~~D~~~l---~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 51 SVIDAGTGNGILACGSYLLGAESVTA--FDIDPDAIETAKRNCGGVNFMVADVSEI---SGKYDTWIMNPPF 117 (197)
T ss_dssp EEEEETCTTCHHHHHHHHTTBSEEEE--EESCHHHHHHHHHHCTTSEEEECCGGGC---CCCEEEEEECCCC
T ss_pred EEEEeCCCCcHHHHHHHHcCCCcccc--cccCHHHHHHHHHccccccEEEEehhhc---CCcceEEEeCccc
Confidence 899999999999998888875 5888 556688888887754 378999998776 4789999998665
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.28 E-value=1.2e-06 Score=85.65 Aligned_cols=119 Identities=13% Similarity=-0.006 Sum_probs=78.6
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC----CccEEEccCCCC----ccCCCc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG----LIPLYVTLNQRL----PFFDNT 379 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg----~i~~~~~d~~~L----pf~d~s 379 (467)
+.++. +|||+.||+|.++..++..|. .|++ +|+++.+++.+.+ ++ .+.++.+|+.+. .-..+.
T Consensus 142 ~~~g~--~VLdlf~~~G~~sl~aa~~ga~~V~~--vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~ 217 (317)
T d2b78a2 142 SAAGK--TVLNLFSYTAAFSVAAAMGGAMATTS--VDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 217 (317)
T ss_dssp TTBTC--EEEEETCTTTHHHHHHHHTTBSEEEE--EESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred hhCCC--ceeecCCCCcHHHHHHHhCCCceEEE--ecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCC
Confidence 44565 899999999999999888776 6888 5555655555543 23 256888886442 234578
Q ss_pred cceEEecccccc------ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH
Q 012235 380 MDLIHTTGFMDG------WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 380 FDlVis~~~L~h------~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
||+|++.-.-.. +.-......++..+.++|+|||.|++++-.. .-+.+.+..++.+
T Consensus 218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~-~~~~~~f~~~v~~ 279 (317)
T d2b78a2 218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA-NMTVSQFKKQIEK 279 (317)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT-TSCHHHHHHHHHH
T ss_pred CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-cCCHHHHHHHHHH
Confidence 999998643210 1111224578899999999999999876433 2234455555443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.25 E-value=2.6e-06 Score=77.75 Aligned_cols=65 Identities=9% Similarity=0.215 Sum_probs=51.7
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
+|||+|||+|.++..++.+|. .|++ +|+++.+++.+.++ + ...++.+|...+ ++.||+|+++-..
T Consensus 49 ~vLDlg~GtG~l~i~a~~~g~~~v~~--vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 49 VVADLGAGTGVLSYGALLLGAKEVIC--VEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp EEEEETCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred EEEECcCcchHHHHHHHHcCCCEEEE--EcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence 899999999999999988875 7888 66678888877653 2 256777777665 5689999998876
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.12 E-value=2.8e-06 Score=81.45 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=73.4
Q ss_pred ceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----CC---ccEEEccCCC-CccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----GL---IPLYVTLNQR-LPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g~---i~~~~~d~~~-Lpf~d~sFDlVis~~~L 389 (467)
.+++|+|||+|..+..+++. +.+|++ +|+++.+++.+.++ +. +.+..++... ++...+.||+|+|+-..
T Consensus 112 ~~vld~g~GsG~i~~~la~~~~~~v~a--~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPY 189 (271)
T d1nv8a_ 112 KTVADIGTGSGAIGVSVAKFSDAIVFA--TDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 189 (271)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSCEEEE--EESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred cEEEEeeeeeehhhhhhhhcccceeee--chhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccc
Confidence 37999999999988888765 567777 77888888877653 22 4456666544 33334789999998542
Q ss_pred cc----------c-------cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 390 DG----------W-------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 390 ~h----------~-------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
.. + ...+++...-.-+.+.|+|||.+++-.- .++.+.+.+++...||
T Consensus 190 I~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig---~~Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 190 VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG---EDQVEELKKIVSDTVF 253 (271)
T ss_dssp BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC---TTCHHHHTTTSTTCEE
T ss_pred cCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC---HHHHHHHHHHHHhCCE
Confidence 10 0 0111222233335689999999888442 2334455555555554
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.9e-06 Score=78.77 Aligned_cols=107 Identities=20% Similarity=0.179 Sum_probs=74.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCC-Cc-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQR-LP- 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~-Lp- 374 (467)
+..+....... +|||||||+|+-+.++++. +.++++++.| +...+.+++ .+ .+.++.+++.. ++
T Consensus 51 L~~L~~~~~~k--~vLEiGt~~GyStl~~a~al~~~g~i~tie~~--~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~ 126 (219)
T d2avda1 51 LANLARLIQAK--KALDLGTFTGYSALALALALPADGRVVTCEVD--AQPPELGRPLWRQAEAEHKIDLRLKPALETLDE 126 (219)
T ss_dssp HHHHHHHTTCC--EEEEECCTTSHHHHHHHTTSCTTCEEEEEESC--SHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred HHHHHHccCCC--eEEEEechhhHHHHHHHHhCCCCceEEEEeec--hhHHHHHHHHHHhcCccceEEEEEeehhhcchh
Confidence 44444444333 8999999999999999975 5688885544 455444432 23 37788887543 22
Q ss_pred ----cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 ----FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 ----f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
..+++||+|+...--. . ....+..+.+.|+|||.+++++..+.
T Consensus 127 ~~~~~~~~~fD~ifiD~dk~----~--y~~~~~~~~~lL~~GGvii~Dn~l~~ 173 (219)
T d2avda1 127 LLAAGEAGTFDVAVVDADKE----N--CSAYYERCLQLLRPGGILAVLRVLWR 173 (219)
T ss_dssp HHHTTCTTCEEEEEECSCST----T--HHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred hhhhcccCCccEEEEeCCHH----H--HHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 2367899999865432 2 35678889999999999999887664
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.04 E-value=7.2e-06 Score=73.97 Aligned_cols=130 Identities=17% Similarity=0.116 Sum_probs=92.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCc-----cCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLP-----FFDNT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lp-----f~d~s 379 (467)
+.+.+.+.+++ +++|..+|.|+.+..+.+++..|+++| ..+.+++.+.++. .+.++++....+. ...+.
T Consensus 10 vl~~l~~~~g~--~~vD~T~G~GGhs~~iL~~~~~viaiD--~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~ 85 (182)
T d1wg8a2 10 ALDLLAVRPGG--VYVDATLGGAGHARGILERGGRVIGLD--QDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER 85 (182)
T ss_dssp HHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEEE--SCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred HHHhcCCCCCC--EEEEeCCCCcHHHHHHhcccCcEEEEh--hhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCc
Confidence 44667778887 899999999999999999988999954 5567777776543 3678887765543 23467
Q ss_pred cceEEecccccccc--c----hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 380 MDLIHTTGFMDGWL--D----MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 380 FDlVis~~~L~h~~--~----~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
+|.|+....+..+. + -..+...|.....+|+|||.+++.++....+ ..+.+.++..+++.+
T Consensus 86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed--~ivk~~~~e~~~k~i 152 (182)
T d1wg8a2 86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLED--RVVKRFLRESGLKVL 152 (182)
T ss_dssp EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHH--HHHHHHHHHHCSEES
T ss_pred cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchh--HHHHHHHhhccceec
Confidence 99999876654321 1 1123457888899999999999988765432 246666676655443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=6.1e-06 Score=74.07 Aligned_cols=94 Identities=7% Similarity=0.051 Sum_probs=67.2
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCC-ccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRL-PFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~L-pf~d~sFDlVis~~~L~h 391 (467)
+|||++||+|.++...+.+|. .|+. +|.+..+++.+.++ + .+.++.+|+..+ ......||+|++.-...
T Consensus 46 ~vLDlfaGsG~~giealsrGa~~v~~--VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~- 122 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSRYAAGATL--IEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR- 122 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS-
T ss_pred hhhhhhccccceeeeEEecCcceeEE--EEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc-
Confidence 899999999999999999987 5777 67777777766542 2 256677775443 34567899999987652
Q ss_pred ccchhhHHHHHHHHHh--ccCCCcEEEEEe
Q 012235 392 WLDMLLLDFILFDWDR--ILRPGGLLWIDR 419 (467)
Q Consensus 392 ~~~~~~l~~~L~el~R--vLKPGG~LiI~~ 419 (467)
... .+.++..+.+ +|+++|.+++..
T Consensus 123 ~~~---~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 123 RGL---LEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp TTT---HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cch---HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 111 3456666554 699999998854
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.98 E-value=1.8e-06 Score=81.62 Aligned_cols=97 Identities=11% Similarity=0.112 Sum_probs=71.7
Q ss_pred cccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEE
Q 012235 292 KPKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYV 367 (467)
Q Consensus 292 ~~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~ 367 (467)
+|+|+. ..... ..|.+.+.+.+++ +|||||||+|.++..|++.+..|++++ ++..+.+.+.++ ..+.+++
T Consensus 8 GQnFL~-d~~ii-~kIv~~~~~~~~d--~VLEIGpG~G~LT~~L~~~~~~v~aIE--~D~~l~~~l~~~~~~~~n~~ii~ 81 (245)
T d1yuba_ 8 SQNFLT-SEKVL-NQIIKQLNLKETD--TVYEIGTGKGHLTTKLAKISKQVTSIE--LDSHLFNLSSEKLKLNTRVTLIH 81 (245)
T ss_dssp CCCBCC-CTTTH-HHHHHHCCCCSSE--EEEECSCCCSSCSHHHHHHSSEEEESS--SSCSSSSSSSCTTTTCSEEEECC
T ss_pred CCcccC-CHHHH-HHHHHhcCCCCCC--eEEEECCCccHHHHHHHhhcCceeEee--ecccchhhhhhhhhhccchhhhh
Confidence 455665 33333 3445566677766 899999999999999999999999944 445555555443 2478889
Q ss_pred ccCCCCccCCCccceEEeccccccccch
Q 012235 368 TLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 368 ~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
+|+.+++++...++.|+++... |+..+
T Consensus 82 ~D~l~~~~~~~~~~~vv~NLPY-~Ist~ 108 (245)
T d1yuba_ 82 QDILQFQFPNKQRYKIVGNIPY-HLSTQ 108 (245)
T ss_dssp SCCTTTTCCCSSEEEEEEECCS-SSCHH
T ss_pred hhhhccccccceeeeEeeeeeh-hhhHH
Confidence 9999999888888889988876 77665
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.93 E-value=1.1e-05 Score=72.45 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=68.9
Q ss_pred CCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC----ccCCCccce
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL----PFFDNTMDL 382 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L----pf~d~sFDl 382 (467)
.+. +|||++||+|.++...+.+|. .|+. +|.+..+++.+.++ + .+.++.+|+..+ .-....||+
T Consensus 41 ~~~--~vLDlfaGsG~~g~ea~srGa~~v~~--ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDl 116 (182)
T d2fhpa1 41 DGG--MALDLYSGSGGLAIEAVSRGMDKSIC--IEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL 116 (182)
T ss_dssp SSC--EEEETTCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCC--EEEEcccccccccceeeecchhHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcce
Confidence 454 899999999999999999987 4777 56667776666532 2 366888886542 224568999
Q ss_pred EEeccccccccchhhHHHHHHHHH--hccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWD--RILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~--RvLKPGG~LiI~~ 419 (467)
|++.-.. .... ....+..+. .+|+|+|.+++.+
T Consensus 117 IflDPPY-~~~~---~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 117 VLLDPPY-AKQE---IVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp EEECCCG-GGCC---HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred EEechhh-hhhH---HHHHHHHHHHCCCCCCCEEEEEEc
Confidence 9988765 2222 346677665 4799999988743
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.90 E-value=0.00012 Score=65.65 Aligned_cols=124 Identities=16% Similarity=0.075 Sum_probs=77.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccce
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDl 382 (467)
.+.+++....+. +|||.|||+|.|...+.++ ...++|+++|... ...+ ....++.++..... ....||+
T Consensus 10 ~m~~l~~~~~~~--~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~--~~~~---~~~~~~~~~~~~~~-~~~~fd~ 81 (223)
T d2ih2a1 10 FMVSLAEAPRGG--RVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKA--LDLP---PWAEGILADFLLWE-PGEAFDL 81 (223)
T ss_dssp HHHHHCCCCTTC--EEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTT--CCCC---TTEEEEESCGGGCC-CSSCEEE
T ss_pred HHHHhcCCCCcC--EEEECCCchHHHHHHHHHhccccceEEeeecCHHH--Hhhc---ccceeeeeehhccc-cccccce
Confidence 344555666665 8999999999999888765 5679997777432 1111 11345666655443 3578999
Q ss_pred EEeccccccccc-------------------------h-hhHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHH
Q 012235 383 IHTTGFMDGWLD-------------------------M-LLLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMF 434 (467)
Q Consensus 383 Vis~~~L~h~~~-------------------------~-~~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i 434 (467)
|+++........ . .....++....+.|+|||++++..+.. .......+.+.+
T Consensus 82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l 161 (223)
T d2ih2a1 82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFL 161 (223)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHH
T ss_pred ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHH
Confidence 999866532110 0 012356788899999999988865432 223333555555
Q ss_pred HHc
Q 012235 435 LQF 437 (467)
Q Consensus 435 ~~~ 437 (467)
.+-
T Consensus 162 ~~~ 164 (223)
T d2ih2a1 162 ARE 164 (223)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.90 E-value=6.9e-05 Score=72.71 Aligned_cols=134 Identities=17% Similarity=0.201 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcCC--ccEEEccCCCCc
Q 012235 304 DFLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRGL--IPLYVTLNQRLP 374 (467)
Q Consensus 304 d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg~--i~~~~~d~~~Lp 374 (467)
......++...+|+ +|||+.+|.|+=+..+++. ...+++ .|.++.-++.+. +.+. +.....|...++
T Consensus 105 S~l~~~~l~~~~g~--~vlD~CAapGgKt~~l~~~~~~~~~i~a--~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~ 180 (313)
T d1ixka_ 105 SMYPPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYA--FDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG 180 (313)
T ss_dssp HHHHHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEE--ECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG
T ss_pred ccchhhcccCCccc--eeeecccchhhhhHhhhhhcccccceee--eccCHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 34555677888888 9999999999877777654 446777 666665554443 2343 444556666666
Q ss_pred cCCCccceEEec------ccccc-----c--cch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHH
Q 012235 375 FFDNTMDLIHTT------GFMDG-----W--LDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMF 434 (467)
Q Consensus 375 f~d~sFDlVis~------~~L~h-----~--~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i 434 (467)
..++.||.|+.. .++.. | ... .....++....+.|||||+++.++.....++-+ .+...+
T Consensus 181 ~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L 260 (313)
T d1ixka_ 181 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWAL 260 (313)
T ss_dssp GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHH
Confidence 667899999963 11211 1 110 112367888999999999999988776555444 666677
Q ss_pred HHcCcee
Q 012235 435 LQFRYKK 441 (467)
Q Consensus 435 ~~~Gf~~ 441 (467)
++.+++.
T Consensus 261 ~~~~~~~ 267 (313)
T d1ixka_ 261 DNFDVEL 267 (313)
T ss_dssp HHSSEEE
T ss_pred hcCCCEE
Confidence 7766543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.87 E-value=2.5e-05 Score=75.48 Aligned_cols=125 Identities=13% Similarity=0.090 Sum_probs=77.5
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC-----CC--EEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCcc
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ-----NV--TIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPF 375 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----g~--~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf 375 (467)
..++..+.+. +|||.|||+|.+...+.++ .. .++| +|+++.+.+.+... + ......++.... .
T Consensus 110 ~~~~~~~~~~--~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g--~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~ 184 (328)
T d2f8la1 110 EKVIQKKKNV--SILDPACGTANLLTTVINQLELKGDVDVHASG--VDVDDLLISLALVGADLQRQKMTLLHQDGLAN-L 184 (328)
T ss_dssp HHHHTTCSEE--EEEETTCTTSHHHHHHHHHHHTTSSCEEEEEE--EESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-C
T ss_pred HHHhCCCCCC--EEEeCCCCcchhHHHHHHHHHhccCccceEEE--ecccHHHHHHHHHHHHHhhhhhhhhccccccc-c
Confidence 3444444444 8999999999999887643 23 4555 66666666655432 2 255666664433 3
Q ss_pred CCCccceEEeccccccccchh---------------hHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHc
Q 012235 376 FDNTMDLIHTTGFMDGWLDML---------------LLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQF 437 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~---------------~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~ 437 (467)
..+.||+|+++..+....... ....++..+.+.|+|||++++..+.. .......+++.+.+-
T Consensus 185 ~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~ 263 (328)
T d2f8la1 185 LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKN 263 (328)
T ss_dssp CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhC
Confidence 467899999997763221111 11236888999999999987765432 233344566655554
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=0.00015 Score=69.33 Aligned_cols=156 Identities=16% Similarity=0.063 Sum_probs=92.5
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCH--HHHHHHHHcCC-ccEEEccCCCC--ccCC
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGA--PFNEMIALRGL-IPLYVTLNQRL--PFFD 377 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~--~~l~~a~~rg~-i~~~~~d~~~L--pf~d 377 (467)
..+..++...++. +|||+++|.|+=+..+++. +..++++|++... .+.+.+...|. ....+.+.... ....
T Consensus 92 ~l~~~~L~~~~g~--~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~ 169 (284)
T d1sqga2 92 QGCMTWLAPQNGE--HILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGE 169 (284)
T ss_dssp HTHHHHHCCCTTC--EEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTT
T ss_pred cccccccCccccc--eeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhccc
Confidence 3455667777877 9999999999988888765 3568886665443 12222333343 22222222222 1345
Q ss_pred CccceEEec------ccccc-------ccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHHc
Q 012235 378 NTMDLIHTT------GFMDG-------WLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQF 437 (467)
Q Consensus 378 ~sFDlVis~------~~L~h-------~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~~ 437 (467)
+.||.|+.. .++.. |... ..-..+|..+.+.|||||+++.++.....++-+ .+..++++.
T Consensus 170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~ 249 (284)
T d1sqga2 170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT 249 (284)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhC
Confidence 789999952 22211 1110 112467888999999999999988776555444 666667763
Q ss_pred -CceeeE--------EEEccC-CCCceEEEEEeec
Q 012235 438 -RYKKHK--------WAISPK-SKDEVYLSALLEK 462 (467)
Q Consensus 438 -Gf~~l~--------W~~~~k-~~devyl~avlqK 462 (467)
+++.+. +..-+. .+.+.|+.|+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~l~K 284 (284)
T d1sqga2 250 ADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK 284 (284)
T ss_dssp TTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred CCcEEecCCCCCCCcEEECCCCCCcccEEEEEEEC
Confidence 444433 222221 2234588888987
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.86 E-value=3.3e-05 Score=72.12 Aligned_cols=82 Identities=9% Similarity=0.069 Sum_probs=62.3
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccceEE
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.+.+.+++ +|||||||+|.++..|++.+..|++ +++.+.+.+.+.++ ..+.++++|+..++++......|+
T Consensus 15 ~~~~~~~~d--~VlEIGpG~G~LT~~Ll~~~~~v~a--vE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv 90 (235)
T d1qama_ 15 TNIRLNEHD--NIFEIGSGKGHFTLELVQRCNFVTA--IEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIF 90 (235)
T ss_dssp TTCCCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--ECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEE
T ss_pred HhcCCCCCC--eEEEECCCchHHHHHHHhCcCceEE--EeeccchHHHHHHHhhcccchhhhhhhhhhccccccccceee
Confidence 334455666 9999999999999999999999999 55557777777654 247899999998887666556677
Q ss_pred eccccccccch
Q 012235 385 TTGFMDGWLDM 395 (467)
Q Consensus 385 s~~~L~h~~~~ 395 (467)
++... +...+
T Consensus 91 ~NLPY-nIss~ 100 (235)
T d1qama_ 91 GNIPY-NISTD 100 (235)
T ss_dssp EECCG-GGHHH
T ss_pred eeehh-hhhHH
Confidence 77666 55544
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.83 E-value=6.7e-05 Score=71.55 Aligned_cols=121 Identities=8% Similarity=-0.026 Sum_probs=78.1
Q ss_pred CceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc----------------CCccEEEccCCCCccCCCcc
Q 012235 318 TRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR----------------GLIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r----------------g~i~~~~~d~~~Lpf~d~sF 380 (467)
.++||.+|+|.|..+..+.+.+ ..|+. +++.+.+++.+++- ..+.++.+|+..+--.+++|
T Consensus 73 p~~vLiiG~G~G~~~~~~l~~~~~~v~~--VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 73 PKRVLVIGGGDGGTVREVLQHDVDEVIM--VEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEE--EESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CceEEEecCCchHHHHHHHHhCCceEEE--ecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 3489999999999999988774 45666 55667777776531 23678888876543346789
Q ss_pred ceEEeccccccccchh--hHHHHHHHHHhccCCCcEEEEEec--ccCCCCHHHHHHHHHHcCceee
Q 012235 381 DLIHTTGFMDGWLDML--LLDFILFDWDRILRPGGLLWIDRF--FCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 381 DlVis~~~L~h~~~~~--~l~~~L~el~RvLKPGG~LiI~~~--~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
|+|+....- ...... .-..+++.+.+.|+|||.+++... ....+....+.+.+++. |..+
T Consensus 151 DvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v 214 (276)
T d1mjfa_ 151 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRV 214 (276)
T ss_dssp EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEE
T ss_pred CEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh-CCee
Confidence 999975432 111111 014789999999999999887542 22222222445556665 5544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.75 E-value=2e-05 Score=73.33 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=72.9
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcCC---ccEEEccCCCC-c-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRGL---IPLYVTLNQRL-P- 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg~---i~~~~~d~~~L-p- 374 (467)
+..++..... ++||+||+++|+-+.+|++. +..+++++.| +...+.++ +.|. +.++.+++... +
T Consensus 51 L~~L~~~~~~--k~iLEiGT~~GyStl~la~al~~~g~v~tie~~--~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~ 126 (227)
T d1susa1 51 LSMLLKLINA--KNTMEIGVYTGYSLLATALAIPEDGKILAMDIN--KENYELGLPVIKKAGVDHKIDFREGPALPVLDE 126 (227)
T ss_dssp HHHHHHHHTC--CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESC--CHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH
T ss_pred HHHHHHhcCC--CcEEEecchhhhhHHHHHhhCCCCcEEEEEecc--chhHHHHHHHHHHhccccceeeeehHHHHHHHH
Confidence 3344443333 38999999999999999864 5688885555 44444443 3343 77888875432 2
Q ss_pred -----cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 -----FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 -----f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
...++||+|+...-- .. ....+..+.+.|+|||.+++++..+.
T Consensus 127 l~~~~~~~~~fD~iFiDa~k----~~--y~~~~e~~~~ll~~gGiii~DNvl~~ 174 (227)
T d1susa1 127 MIKDEKNHGSYDFIFVDADK----DN--YLNYHKRLIDLVKVGGVIGYDNTLWN 174 (227)
T ss_dssp HHHCGGGTTCBSEEEECSCS----TT--HHHHHHHHHHHBCTTCCEEEETTTGG
T ss_pred HHhccccCCceeEEEeccch----hh--hHHHHHHHHhhcCCCcEEEEccCCCC
Confidence 135689999986533 22 35778888999999999999877653
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.69 E-value=0.00019 Score=69.60 Aligned_cols=124 Identities=10% Similarity=0.061 Sum_probs=78.8
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCCC-ccCCCccceE
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQRL-PFFDNTMDLI 383 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~L-pf~d~sFDlV 383 (467)
.++||.||.|.|..+..+.+. ...|+. +++.+..++.+++. ..+.++.+|+..+ .-.++.||+|
T Consensus 78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~--VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 78 PKRVLIVGGGEGATLREVLKHPTVEKAVM--VDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEE--EESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred cceEEEeCCCchHHHHHHHhcCCcceEEE--ecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 458999999999999999876 357888 45556777666532 2377888886654 2345789999
Q ss_pred Eecccccccc-----chhhHHHHHHHHHhccCCCcEEEEEe--cccCCCCHH-HHHHHHHHcCcee-eEEE
Q 012235 384 HTTGFMDGWL-----DMLLLDFILFDWDRILRPGGLLWIDR--FFCNKKDLD-DYMYMFLQFRYKK-HKWA 445 (467)
Q Consensus 384 is~~~L~h~~-----~~~~l~~~L~el~RvLKPGG~LiI~~--~~~~~~~~~-~~~~~i~~~Gf~~-l~W~ 445 (467)
+....- .+. ..-.-..+++.+.+.|+|||.+++.. +....+... .+.+.++.. |.. ..|.
T Consensus 156 i~D~~d-p~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~-F~~V~~y~ 224 (312)
T d1uira_ 156 IIDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRSYK 224 (312)
T ss_dssp EEECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEEEE
T ss_pred EEeCCC-cccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHh-CceEEEEE
Confidence 975421 111 11111478999999999999988743 222233332 455666666 533 3343
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00053 Score=66.55 Aligned_cols=139 Identities=18% Similarity=0.271 Sum_probs=85.0
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cC--CccEEEccCCCC----ccCCC
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RG--LIPLYVTLNQRL----PFFDN 378 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg--~i~~~~~d~~~L----pf~d~ 378 (467)
++++..+++ +|||+-||+|.|+..|++++..|+| ++.++.+++.|++ .+ ++.++.++.+.. +....
T Consensus 206 ~~~~~~~~~--~vlDLycG~G~fsl~La~~~~~V~g--vE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~ 281 (358)
T d1uwva2 206 EWLDVQPED--RVLDLFCGMGNFTLPLATQAASVVG--VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 281 (358)
T ss_dssp HHHTCCTTC--EEEEESCTTTTTHHHHHTTSSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTT
T ss_pred HhhccCCCc--eEEEecccccccchhccccccEEEe--ccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhc
Confidence 444455555 8999999999999999999999999 5666777666643 23 367888876542 23357
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHH-HHHHHHHHcCceeeEEEEccC--CCCceE
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQFRYKKHKWAISPK--SKDEVY 455 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k--~~devy 455 (467)
.+|+|+..-.-.. +...+..+.+. +|.-.++++ |+..... ++. .+.+.||+..+.....- .-..+=
T Consensus 282 ~~d~vilDPPR~G------~~~~~~~l~~~-~~~~ivYVS---Cnp~TlaRDl~-~l~~~gy~l~~i~~~D~FP~T~HvE 350 (358)
T d1uwva2 282 GFDKVLLDPARAG------AAGVMQQIIKL-EPIRIVYVS---CNPATLARDSE-ALLKAGYTIARLAMLDMFPHTGHLE 350 (358)
T ss_dssp CCSEEEECCCTTC------CHHHHHHHHHH-CCSEEEEEE---SCHHHHHHHHH-HHHHTTCEEEEEEEECCSTTSSCCE
T ss_pred cCceEEeCCCCcc------HHHHHHHHHHc-CCCEEEEEe---CCHHHHHHHHH-HHHHCCCeEeEEEEEecCCCCccEE
Confidence 7999988655422 12456666553 677666663 3333332 333 34456786554443322 223344
Q ss_pred EEEEeec
Q 012235 456 LSALLEK 462 (467)
Q Consensus 456 l~avlqK 462 (467)
..++|+|
T Consensus 351 ~v~~l~R 357 (358)
T d1uwva2 351 SMVLFSR 357 (358)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 4556654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.36 E-value=0.00066 Score=64.98 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=76.8
Q ss_pred CCceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHH----------cCCccEEEccCCCCc--cCCCccce
Q 012235 317 ETRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIAL----------RGLIPLYVTLNQRLP--FFDNTMDL 382 (467)
Q Consensus 317 ~~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~----------rg~i~~~~~d~~~Lp--f~d~sFDl 382 (467)
..++||=||.|.|..+..+.+. + ..++.+ ++.+..++.+++ ...+.++.+|+...- ..++.||+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~V--EiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMC--EIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEE--ESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEe--cCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 3468999999999999999987 4 367774 455666666643 234778888865432 33568999
Q ss_pred EEeccccc-cccchhhHHHHHHHHHhccCCCcEEEEEecccCC--CCHHHHHHHHHHc
Q 012235 383 IHTTGFMD-GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK--KDLDDYMYMFLQF 437 (467)
Q Consensus 383 Vis~~~L~-h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--~~~~~~~~~i~~~ 437 (467)
|+....-. .....-.-..+++.+.+.|+|||.+++....... +......+.+.+.
T Consensus 158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v 215 (290)
T d1xj5a_ 158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREI 215 (290)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhh
Confidence 99743210 1111111147999999999999999886433221 1122455555655
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.32 E-value=0.00032 Score=67.48 Aligned_cols=121 Identities=10% Similarity=-0.012 Sum_probs=76.5
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-ccCCCccceEE
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-PFFDNTMDLIH 384 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-pf~d~sFDlVi 384 (467)
.++||-||.|.|..+..+.+. ...|+.++ +.+.+++.+++- ..+.++.+|+..+ .-.++.||+|+
T Consensus 90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VE--IDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCE--VDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEE--SCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CceEEEecCCchHHHHHHHhcCCCceEEEec--CCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 458999999999999999987 34677744 556666666431 2477888886543 23467899999
Q ss_pred ecccccccc-c--hhhHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceee
Q 012235 385 TTGFMDGWL-D--MLLLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 385 s~~~L~h~~-~--~~~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l 442 (467)
....- ... . .-.-..+++.+.+.|+|||.+++..... ..+....+.+.+++. |..+
T Consensus 168 ~D~~d-p~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v 228 (295)
T d1inla_ 168 IDSTD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPIT 228 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEE
T ss_pred EcCCC-CCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh-ccee
Confidence 75432 110 0 0001479999999999999988754322 111222455556666 5433
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.30 E-value=0.00048 Score=61.17 Aligned_cols=95 Identities=12% Similarity=0.115 Sum_probs=64.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----CC----ccEEEccCC---CCccCCCccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----GL----IPLYVTLNQ---RLPFFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g~----i~~~~~d~~---~Lpf~d~sFDlVis~~ 387 (467)
+|||+-||+|.++...+.+|. .|+. +|.+..+++.+.+. +. ..++..+.. ........||+|++.-
T Consensus 46 ~vLDlFaGsG~~glEalSRGA~~v~f--VE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 46 ECLDGFAGSGSLGFEALSRQAKKVTF--LELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred eEeecccCccceeeeeeeecceeeEE--eecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence 899999999999999999987 5777 66777776655542 21 233444422 2233356799999987
Q ss_pred ccccccchhhHHHHHHHHH--hccCCCcEEEEEec
Q 012235 388 FMDGWLDMLLLDFILFDWD--RILRPGGLLWIDRF 420 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~--RvLKPGG~LiI~~~ 420 (467)
.. .... .+..+..+. .+|+++|.+++-+.
T Consensus 124 PY-~~~~---~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 124 PF-HFNL---AEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CS-SSCH---HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hH-hhhh---HHHHHHHHHHhCCcCCCcEEEEEec
Confidence 76 2221 345666665 47999999888553
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.29 E-value=0.00033 Score=65.76 Aligned_cols=142 Identities=11% Similarity=-0.027 Sum_probs=75.1
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCH---HHHHHHHHcCCccEEEc-cCCCCccCCCccceEEe
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGA---PFNEMIALRGLIPLYVT-LNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~---~~l~~a~~rg~i~~~~~-d~~~Lpf~d~sFDlVis 385 (467)
-+.++. +|+|+|||.|.++..++++. ..|.|+++-..- ++.......+.+.+... +... .+++..|+|+|
T Consensus 63 ~~~~~~--~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlc 138 (257)
T d2p41a1 63 LVTPEG--KVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLC 138 (257)
T ss_dssp SSCCCE--EEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEE
T ss_pred CccCCC--eEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCcCCEEEe
Confidence 355665 89999999999999999773 456665442111 11000000111223222 2333 34688999999
Q ss_pred ccccccc---cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH-cCceeeEEEEccCCCCceEEE
Q 012235 386 TGFMDGW---LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ-FRYKKHKWAISPKSKDEVYLS 457 (467)
Q Consensus 386 ~~~L~h~---~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~-~Gf~~l~W~~~~k~~devyl~ 457 (467)
..+-..- .+......++.-+.+.|+|||.|++-.+....++.-+..+.+.+ +|=..++--.......|.|+.
T Consensus 139 Dm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg~lVR~P~SRnst~EmY~V 214 (257)
T d2p41a1 139 DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNPLSRNSTHEMYWV 214 (257)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCTTSCTTCCCEEEE
T ss_pred eCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCCeeEcCCCCccccceeEEe
Confidence 8764211 11111225667778999999999886665444333333333333 222222211111244567765
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.00044 Score=66.13 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=77.0
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----------cCCccEEEccCCCCc-cCCCccceEE
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----------RGLIPLYVTLNQRLP-FFDNTMDLIH 384 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----------rg~i~~~~~d~~~Lp-f~d~sFDlVi 384 (467)
.++||-||.|.|..+..+.+. ..+++. +++.+..++.+++ ...+.++.+|+..+- -..++||+|+
T Consensus 79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~--vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 79 PRKVLIIGGGDGGVLREVVKHPSVESVVQ--CEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEE--EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCeEEEeCCCchHHHHHHHHcCCcceeee--ccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 458999999999999999987 457777 4455666666643 134778888865432 3467899999
Q ss_pred eccccccccc--hhhHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceee
Q 012235 385 TTGFMDGWLD--MLLLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 385 s~~~L~h~~~--~~~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l 442 (467)
+...- .... .-.-..+++.+.+.|+|||.+++..... ..+....+.+.++.. |..+
T Consensus 157 ~D~~~-p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v 216 (285)
T d2o07a1 157 TDSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVV 216 (285)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEE
T ss_pred EcCCC-CCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc-CCee
Confidence 86422 1111 1111368999999999999998854322 111222455556655 5444
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.26 E-value=0.00057 Score=64.90 Aligned_cols=117 Identities=9% Similarity=-0.000 Sum_probs=77.0
Q ss_pred CceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-ccCCCccceEE
Q 012235 318 TRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-PFFDNTMDLIH 384 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-pf~d~sFDlVi 384 (467)
.++||-||.|.|..+..+.+. + ..++.+++ .+..++.+++- ..+.++.+|+... .-.+++||+|+
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEI--D~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDI--DGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEES--CHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred cceEEecCCCCcHHHHHHHhcCCcceEEEecC--CHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 348999999999999999986 3 47888444 46666666431 2367888886553 23467899999
Q ss_pred ecccc-----ccccchhhHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCcee
Q 012235 385 TTGFM-----DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 385 s~~~L-----~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~ 441 (467)
....- .+... +.+++.+.+.|+|||.++...... ..+....+.+.+++. |..
T Consensus 154 ~D~~~p~~~~~~L~t----~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~-F~~ 212 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFT----KGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPI 212 (274)
T ss_dssp ESCSSCCSCCCCCST----THHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSE
T ss_pred EcCCCCCCcchhhcc----HHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh-cCc
Confidence 76422 11222 478999999999999988753222 111223555666665 433
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.20 E-value=0.00049 Score=66.64 Aligned_cols=122 Identities=11% Similarity=0.018 Sum_probs=75.7
Q ss_pred CceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCc-cCCCccceEE
Q 012235 318 TRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLP-FFDNTMDLIH 384 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lp-f~d~sFDlVi 384 (467)
.++||-||.|.|..++.+.+.. ..|+. +++.+..++.+++- ..+.++.+|+..+- -..+.||+|+
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~v~~v~~--VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHESVEKVTM--CEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEE--ECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCeEEEeCCCchHHHHHHHHcCCcceEEE--EcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4589999999999999999873 46888 55567777777642 23567777755432 3467899999
Q ss_pred eccccccc-cchhhHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceee
Q 012235 385 TTGFMDGW-LDMLLLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 385 s~~~L~h~-~~~~~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l 442 (467)
....-..- ........+++.+.+.|+|||.++...-.. ..+....+.+.++.. |..+
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~v 244 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAV 244 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEE
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc-cceE
Confidence 86432111 111112478999999999999988853222 111222455555555 5443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.18 E-value=0.002 Score=59.96 Aligned_cols=115 Identities=10% Similarity=0.069 Sum_probs=75.7
Q ss_pred ceEEEECCCccHHHHHHhh--CCCEEEEEecCCCHHH---HHHHH-HcCC--ccEEEccCCCCcc---CCCccceEEecc
Q 012235 319 RIGLDFGVGTGTFAARMRE--QNVTIVSTALNLGAPF---NEMIA-LRGL--IPLYVTLNQRLPF---FDNTMDLIHTTG 387 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~--~g~~V~gvdiDiS~~~---l~~a~-~rg~--i~~~~~d~~~Lpf---~d~sFDlVis~~ 387 (467)
.+++|||+|.|.-+..++- .+..++- +|.+..- ++.+. +-++ +.++++.++.+.. ..++||+|+|-.
T Consensus 72 ~~ilDiGSGaGfPGi~laI~~p~~~v~L--ves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 72 NTICDVGAGAGFPSLPIKICFPHLHVTI--VDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CeEEeecCCCchHHHHHHHhCCCcccee--ecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 3899999999977766664 3677777 5555543 33333 2343 5667776665542 246899999976
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
+-. +..++.-....+++||.+++.---...++.+...+.+...|+...
T Consensus 150 va~-------l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~ 197 (239)
T d1xdza_ 150 VAR-------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE 197 (239)
T ss_dssp CSC-------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred hhC-------HHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEE
Confidence 542 467889999999999998885433333334455666777777543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00071 Score=61.73 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=64.8
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHH---HHH-HcCC--ccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNE---MIA-LRGL--IPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~---~a~-~rg~--i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+++|+|+|.|.-+..++-. ..+++. +|....-.. .+. +-+. +.++++.++.+.. ..+||+|+|..+-.
T Consensus 68 ~ilDiGsGaG~PGi~laI~~p~~~~~L--ves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~V~sRA~~~- 143 (207)
T d1jsxa_ 68 RFIDVGTGPGLPGIPLSIVRPEAHFTL--LDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-EPPFDGVISRAFAS- 143 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-CSCEEEEECSCSSS-
T ss_pred ceeeeeccCCceeeehhhhcccceEEE--EecchHHHHHHHHHHHHcCCcceeeeccchhhhcc-ccccceehhhhhcC-
Confidence 8999999999777776643 567888 565554433 332 3343 6778888887653 56899998866541
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+..++.-....+++||.+++.-
T Consensus 144 ------~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 144 ------LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred ------HHHHHHHHHHhcCCCcEEEEEC
Confidence 3578888899999999988844
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0013 Score=62.57 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=59.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~s 379 (467)
|.+.+++.+++ .|||||+|+|.++..|++++..++++++| ..+.+...++ +.+.++.+|+...+++ .
T Consensus 13 Iv~~~~~~~~d--~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D--~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~--~ 86 (278)
T d1zq9a1 13 IIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAKKVVACELD--PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--F 86 (278)
T ss_dssp HHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSSEEEEEESC--HHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--C
T ss_pred HHHHhCCCCCC--EEEEECCCchHHHHHHHhcCCcEEEEEEc--cchhHHHHHHHhhhccccchhhhHHHHhhhhhh--h
Confidence 44455666666 89999999999999999999999995555 5666655542 2367889998777653 3
Q ss_pred cceEEeccccccccch
Q 012235 380 MDLIHTTGFMDGWLDM 395 (467)
Q Consensus 380 FDlVis~~~L~h~~~~ 395 (467)
++.|+++... +...+
T Consensus 87 ~~~vV~NLPY-~Iss~ 101 (278)
T d1zq9a1 87 FDTCVANLPY-QISSP 101 (278)
T ss_dssp CSEEEEECCG-GGHHH
T ss_pred hhhhhcchHH-HHHHH
Confidence 5678888766 44433
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.0094 Score=56.52 Aligned_cols=128 Identities=13% Similarity=-0.036 Sum_probs=75.9
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHH----HcCC--ccEEEccCCCCcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIA----LRGL--IPLYVTLNQRLPF 375 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~----~rg~--i~~~~~d~~~Lpf 375 (467)
.....++...+++ +|||+++|.|+-+..+++. +..++++| .+..-++.+. +.|. +.+...|...+..
T Consensus 84 ~l~~~~L~~~~g~--~vLD~cAapGgKt~~la~l~~~~~~i~a~d--~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~ 159 (293)
T d2b9ea1 84 CLPAMLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFD--LDAKRLASMATLLARAGVSCCELAEEDFLAVSP 159 (293)
T ss_dssp GHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred cccccccCCCccc--eEEecccchhhHHHHHHHHhcCCceEeeec--CCHHHHHHHHHHHHhcCccceeeeehhhhhhcc
Confidence 3455667777887 8999999999988887764 56788854 5554444333 3343 5666777665542
Q ss_pred C---CCccceEEecc------cccc-----c----cch--hhH----HHHHHHHHhccCCCcEEEEEecccCCCCHH-HH
Q 012235 376 F---DNTMDLIHTTG------FMDG-----W----LDM--LLL----DFILFDWDRILRPGGLLWIDRFFCNKKDLD-DY 430 (467)
Q Consensus 376 ~---d~sFDlVis~~------~L~h-----~----~~~--~~l----~~~L~el~RvLKPGG~LiI~~~~~~~~~~~-~~ 430 (467)
. .+.||.|+... ++.. | .+. ..+ ..++.... .|+|||.++.++-....++.+ .+
T Consensus 160 ~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV 238 (293)
T d2b9ea1 160 SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVV 238 (293)
T ss_dssp TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHH
T ss_pred cccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHH
Confidence 2 25799999641 1111 1 100 001 23444444 479999999988766555444 55
Q ss_pred HHHHHHc
Q 012235 431 MYMFLQF 437 (467)
Q Consensus 431 ~~~i~~~ 437 (467)
...+++.
T Consensus 239 ~~~L~~~ 245 (293)
T d2b9ea1 239 RDALQQN 245 (293)
T ss_dssp HHHHTTS
T ss_pred HHHHHhC
Confidence 5566543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.77 E-value=0.001 Score=61.64 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=64.7
Q ss_pred HHHhc-CCCCCCceEEEECCCccHHHHHHhh------CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc----cC
Q 012235 308 SDILA-IKPGETRIGLDFGVGTGTFAARMRE------QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP----FF 376 (467)
Q Consensus 308 ~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~------~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp----f~ 376 (467)
.+++. ++|. +||+||++.|.-+..+++ ...+++++|+|.+..... ......+.++.+|..... +.
T Consensus 73 ~eli~~~KPk---~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-~~~~~~I~~i~gDs~~~~~~~~l~ 148 (232)
T d2bm8a1 73 HDMLWELRPR---TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-ASDMENITLHQGDCSDLTTFEHLR 148 (232)
T ss_dssp HHHHHHHCCS---EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-GGGCTTEEEEECCSSCSGGGGGGS
T ss_pred HHHHHHhCCC---EEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-hccccceeeeecccccHHHHHHHH
Confidence 34443 5544 799999999976665553 256899988876432111 112244888998865443 23
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
...+|+|+.... |..... ...+ ++...|+|||++++.+.
T Consensus 149 ~~~~dlIfID~~--H~~~~v--~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 149 EMAHPLIFIDNA--HANTFN--IMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SSCSSEEEEESS--CSSHHH--HHHH-HHHHTCCTTCEEEECSC
T ss_pred hcCCCEEEEcCC--cchHHH--HHHH-HHhcccCcCCEEEEEcC
Confidence 456888886544 333331 1223 46689999999999553
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.00084 Score=62.96 Aligned_cols=84 Identities=10% Similarity=0.098 Sum_probs=59.0
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCC-----
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFD----- 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d----- 377 (467)
|.+.+.+.+++ .||+||||+|.++..|++++..+++ +++...+.+.+.++. .+.++.+|+..+++..
T Consensus 13 Iv~~~~~~~~d--~vlEIGpG~G~LT~~Ll~~~~~v~a--iEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~~~ 88 (252)
T d1qyra_ 13 IVSAINPQKGQ--AMVEIGPGLAALTEPVGERLDQLTV--IELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKM 88 (252)
T ss_dssp HHHHHCCCTTC--CEEEECCTTTTTHHHHHTTCSCEEE--ECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHH
T ss_pred HHHhcCCCCCC--EEEEECCCchHHHHHHHccCCceEE--EEeccchhHHHHHHhhhccchhHHhhhhhhhccccccccc
Confidence 44555666666 8999999999999999999999999 455577777776542 3778889987765421
Q ss_pred CccceEEeccccccccch
Q 012235 378 NTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~ 395 (467)
+.--.|+++... +...+
T Consensus 89 ~~~~~vvgNlPY-~Iss~ 105 (252)
T d1qyra_ 89 GQPLRVFGNLPY-NISTP 105 (252)
T ss_dssp TSCEEEEEECCT-TTHHH
T ss_pred CCCeEEEecchH-HHHHH
Confidence 122256676655 44443
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.43 E-value=0.011 Score=50.56 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=67.2
Q ss_pred HHhcCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc----------cC
Q 012235 309 DILAIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP----------FF 376 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp----------f~ 376 (467)
....+++++ +||-+||| .|.++..+++. |.+|++ +|.++..++.+++.+.-..+..+..... ..
T Consensus 20 ~~~~~~~g~--~vlV~G~G~vG~~~~~~ak~~Ga~vi~--v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 20 RRAGVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVVC--TARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp HHHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEE--EESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred HHhCCCCCC--EEEEEcccccchhhHhhHhhhcccccc--cchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccc
Confidence 345677787 88999998 46666666655 889888 5666777888887775333332211111 11
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
.+.+|+|+-.-.- ...+....++|+|||++++....
T Consensus 96 g~g~D~vid~~g~---------~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 96 GDLPNVTIDCSGN---------EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp SSCCSEEEECSCC---------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred ccCCceeeecCCC---------hHHHHHHHHHHhcCCceEEEecC
Confidence 3568988855433 36788889999999999886543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.30 E-value=0.0069 Score=60.15 Aligned_cols=127 Identities=14% Similarity=0.019 Sum_probs=77.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---------------CCEEEEEecCCCHHHHHHHHH----cC----C
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---------------NVTIVSTALNLGAPFNEMIAL----RG----L 362 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---------------g~~V~gvdiDiS~~~l~~a~~----rg----~ 362 (467)
.+.+++...++. +|+|-.||+|.|...+.++ ...+.|++++ +.+...+.. .+ .
T Consensus 153 ~mv~ll~~~~~~--~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~--~~~~~la~~n~~l~g~~~~~ 228 (425)
T d2okca1 153 AMVDCINPQMGE--TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT--PLVVTLASMNLYLHGIGTDR 228 (425)
T ss_dssp HHHHHHCCCTTC--CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC--HHHHHHHHHHHHHTTCCSSC
T ss_pred hhheeccCcccc--eeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhcc--HHHHHHHHhhhhhcCCcccc
Confidence 344555555555 8999999999998877653 1247775544 444443332 22 2
Q ss_pred ccEEEccCCCCccCCCccceEEecccccccc--------------chhhHHHHHHHHHhccCCCcEEEEEeccc--CCCC
Q 012235 363 IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL--------------DMLLLDFILFDWDRILRPGGLLWIDRFFC--NKKD 426 (467)
Q Consensus 363 i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~--------------~~~~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~ 426 (467)
..+..+|.... .....||+|+++..+..-. ....--.++..+.+.|++||.+.+..+.. ....
T Consensus 229 ~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~ 307 (425)
T d2okca1 229 SPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAG 307 (425)
T ss_dssp CSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCST
T ss_pred ceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhh
Confidence 45677765543 3467899999997762110 00111358889999999999988876532 1222
Q ss_pred -HHHHHHHHHHc
Q 012235 427 -LDDYMYMFLQF 437 (467)
Q Consensus 427 -~~~~~~~i~~~ 437 (467)
...+++.+-+-
T Consensus 308 ~~~~iR~~Ll~~ 319 (425)
T d2okca1 308 AGETIRKRLLQD 319 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 23555555443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.17 E-value=0.0066 Score=52.87 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=67.4
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc---------cC
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP---------FF 376 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp---------f~ 376 (467)
+...+++|+ +||-+|+|. |.++..+++. |. +|++ +|.++..++.+++-|.-.++........ ..
T Consensus 22 ~~~~~~~G~--~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~ 97 (182)
T d1vj0a2 22 EYPESFAGK--TVVIQGAGPLGLFGVVIARSLGAENVIV--IAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITH 97 (182)
T ss_dssp TCSSCCBTC--EEEEECCSHHHHHHHHHHHHTTBSEEEE--EESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTT
T ss_pred HHhCCCCCC--EEEEECCCccchhheecccccccccccc--cccccccccccccccceEEEeccccchHHHHHHHHHhhC
Confidence 334567777 899999984 6777777765 76 6888 5667778888887775333332222111 12
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
...+|+|+-.-.- ...+....+.|+|||.+++......
T Consensus 98 ~~g~Dvvid~vG~---------~~~~~~a~~~l~~~G~iv~~G~~~~ 135 (182)
T d1vj0a2 98 GRGADFILEATGD---------SRALLEGSELLRRGGFYSVAGVAVP 135 (182)
T ss_dssp TSCEEEEEECSSC---------TTHHHHHHHHEEEEEEEEECCCCSC
T ss_pred CCCceEEeecCCc---------hhHHHHHHHHhcCCCEEEEEeecCC
Confidence 3469998855432 2467888999999999988654433
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.09 E-value=0.011 Score=51.47 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=69.7
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCc
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~s 379 (467)
+..++++++ +||=+|||. |..+..+++. |. .|++ +|.++..++.+.+-|...++......+. .....
T Consensus 21 ~~a~~~~g~--~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~--~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 21 ELADIEMGS--SVVVIGIGAVGLMGIAGAKLRGAGRIIG--VGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp HHTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSCEEE--ECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSC
T ss_pred HHhCCCCCC--EEEEEcCCcchhhhhhhhhccccccccc--ccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccC
Confidence 456788888 888899986 7788888776 65 6877 6667777888888775444433222211 12345
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+|+|+-.-.- ...+.+..+.+||+|.+++.....
T Consensus 97 ~D~vid~~g~---------~~~~~~a~~~~~~~G~iv~~G~~~ 130 (174)
T d1jqba2 97 VDRVIMAGGG---------SETLSQAVKMVKPGGIISNINYHG 130 (174)
T ss_dssp EEEEEECSSC---------TTHHHHHHHHEEEEEEEEECCCCC
T ss_pred cceEEEccCC---------HHHHHHHHHHHhcCCEEEEEeecC
Confidence 9998865543 246788889999999998865443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0093 Score=51.49 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=65.2
Q ss_pred HHhcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCc
Q 012235 309 DILAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~s 379 (467)
+...+++++ +||-.|+ |.|..+..+++. |.+|++++ .+++..+.+.+.|...++.....++. ...+.
T Consensus 22 ~~~~~~~g~--~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~--~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 22 HSACVKAGE--SVLVHGASGGVGLAACQIARAYGLKILGTA--GTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp TTSCCCTTC--EEEEETCSSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred HHhCCCCCC--EEEEEeccccccccccccccccCccccccc--ccccccccccccCcccccccccccHHHHhhhhhccCC
Confidence 334567777 8999996 456777777765 89998844 46667778877775444433222211 23567
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+|+|+....- ..+.+..++|+|+|.++..
T Consensus 98 ~d~v~d~~g~----------~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 98 IDIIIEMLAN----------VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp EEEEEESCHH----------HHHHHHHHHEEEEEEEEEC
T ss_pred ceEEeecccH----------HHHHHHHhccCCCCEEEEE
Confidence 9999875432 4678888999999998874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.62 E-value=0.016 Score=51.52 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=69.3
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCc
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~s 379 (467)
+..++++++ +||-+|||. |..+..+++. |. .|+. .|.++..++.+.+.|...++.....++. .....
T Consensus 19 ~~a~v~~G~--tVlV~GaG~vGl~a~~~ak~~ga~~Vi~--~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 19 VTAGVGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIV--GDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPE 94 (195)
T ss_dssp HHTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--EESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred HHhCCCCCC--EEEEECcCHHHHHHHHHHHhhcccceee--ecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCC
Confidence 456788888 999999998 5666666654 55 6777 5667788888888885333322222111 12456
Q ss_pred cceEEecccc------ccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 380 MDLIHTTGFM------DGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 380 FDlVis~~~L------~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
+|+++-.-.. .+..........+....++++|||.+.+....
T Consensus 95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~ 142 (195)
T d1kola2 95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY 142 (195)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence 8998854321 01111111136899999999999999886543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.014 Score=50.13 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=64.5
Q ss_pred HhcCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCC-C-CccCCCccceEEe
Q 012235 310 ILAIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ-R-LPFFDNTMDLIHT 385 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~-~-Lpf~d~sFDlVis 385 (467)
...+++++ +||-+|+| .|.++..+++. |.+|+++ |.++..++.+++-|.-.++..... . .....+.||.|+.
T Consensus 22 ~~~~~~g~--~vlI~GaG~vG~~a~q~ak~~G~~vi~~--~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~ 97 (168)
T d1piwa2 22 RNGCGPGK--KVGIVGLGGIGSMGTLISKAMGAETYVI--SRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVV 97 (168)
T ss_dssp HTTCSTTC--EEEEECCSHHHHHHHHHHHHHTCEEEEE--ESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred HhCcCCCC--EEEEECCCCcchhHHHHhhhcccccccc--ccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEE
Confidence 34677887 89999998 56777777755 9999884 455666788887774344432211 1 1123467998886
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
.-.-.+- ..+....+.|+|||++++...
T Consensus 98 ~~~~~~~-------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 98 CASSLTD-------IDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CCSCSTT-------CCTTTGGGGEEEEEEEEECCC
T ss_pred EecCCcc-------chHHHHHHHhhccceEEEecc
Confidence 4322110 124567899999999988643
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.80 E-value=0.056 Score=45.76 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=63.4
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccce
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDL 382 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDl 382 (467)
...+++++ +||=+|+|. |..+..+++. |.+|++ +|.++..++.+++-|...++....++.. ...+.+|.
T Consensus 22 ~~~~~~g~--~VlV~GaG~vG~~~~~~ak~~G~~Vi~--~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 22 QTNARPGQ--WVAISGIGGLGHVAVQYARAMGLHVAA--IDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp HHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEE--EESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred HhCCCCCC--EEEEeeccccHHHHHHHHHHcCCccce--ecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccc
Confidence 45678887 888899875 5555666654 888888 5666777888888775445443322221 11233445
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|.+... ...+....+.|+|||++++...
T Consensus 98 i~~~~~----------~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 98 LVTAVS----------NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp EECCSC----------HHHHHHHHTTEEEEEEEEECCC
T ss_pred cccccc----------chHHHHHHHHhcCCcEEEEEEe
Confidence 544333 2568888999999999988543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.025 Score=57.61 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=66.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC----C----------------CEEEEEecCCCHHHHHHHHH----cC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ----N----------------VTIVSTALNLGAPFNEMIAL----RG 361 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----g----------------~~V~gvdiDiS~~~l~~a~~----rg 361 (467)
++.+++...++. +|+|-.||+|.|.....++ . ..++|.+++ +.+...+.. .+
T Consensus 155 ~mv~ll~~~~~~--~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~--~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 155 TIIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV--PGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC--HHHHHHHHHHHHTTT
T ss_pred hhhhcccCccch--hhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccC--HHHHHHHHHHHHhhc
Confidence 455666666665 8999999999998766542 1 246785544 444444432 12
Q ss_pred C-------ccEEEccCCCCc-cCCCccceEEecccccccc------------chhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 362 L-------IPLYVTLNQRLP-FFDNTMDLIHTTGFMDGWL------------DMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 362 ~-------i~~~~~d~~~Lp-f~d~sFDlVis~~~L~h~~------------~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
. ..+..++...-+ .....||+|+++-.+..-. ... --.++..+.+.|+|||++.+..+
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~-~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccc-cHHHHHHHHHhccccCcEEEEEe
Confidence 1 123333322211 2346799999997662110 011 12478899999999999988765
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.79 E-value=0.078 Score=45.90 Aligned_cols=99 Identities=14% Similarity=0.039 Sum_probs=68.7
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-------cCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------FFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------f~d~s 379 (467)
...+++++ +||=+|||. |..+..+++. |. .|+. .|.++.-++.+++-|...++.....+.. ...+.
T Consensus 23 ~a~v~~G~--~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~--~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 23 TAKVTPGS--TCAVFGLGCVGLSAIIGCKIAGASRIIA--IDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp TSCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hhCCCCCC--EEEEECCChHHHHHHHHHHHhCCceeee--eccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCC
Confidence 34577787 899999997 7777777766 65 5666 5666777888888776444433221111 23467
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEecc
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDRFF 421 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~~ 421 (467)
+|+|+-.-.- ...+.+..+.|+|| |.+++.-..
T Consensus 99 ~d~vie~~G~---------~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 99 VDYSLDCAGT---------AQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp BSEEEESSCC---------HHHHHHHHHTBCTTTCEEEECCCS
T ss_pred CcEEEEeccc---------chHHHHHHHHhhcCCeEEEecCCC
Confidence 8999865543 46899999999997 999886543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.11 Score=44.29 Aligned_cols=100 Identities=12% Similarity=-0.026 Sum_probs=67.6
Q ss_pred HhcCCCCCCceEEEECCCcc-HHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------cCCC
Q 012235 310 ILAIKPGETRIGLDFGVGTG-TFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP--------FFDN 378 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG-~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp--------f~d~ 378 (467)
..++++++ +||=+|+|.. ..+..+++. |. .|++ .|.++.-++.+++-|.-.++..+..... ....
T Consensus 21 ~~~~~~gd--~VlI~G~G~iG~~~~~~a~~~G~~~Vi~--~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 21 RGGVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVV--TDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp HHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--EESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred HhCCCCCC--EEEEECCCccHHHHHHHHHHcCCceEEe--ccCCHHHHHHHHHhCCcccccccccccccccccccccCCC
Confidence 35677787 8999999864 455555544 76 6887 5666777888887775334443322211 1235
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+|+|+-.-.- ...++...+.+++||++++.....
T Consensus 97 g~Dvvid~~G~---------~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 97 KPEVTIECTGA---------EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp CCSEEEECSCC---------HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred CceEEEeccCC---------chhHHHHHHHhcCCCEEEEEecCC
Confidence 68998876554 368899999999999999866544
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.13 E-value=0.063 Score=45.95 Aligned_cols=96 Identities=20% Similarity=0.143 Sum_probs=63.3
Q ss_pred HHhcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCc
Q 012235 309 DILAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~s 379 (467)
+...+++++ +||=.|+ |.|.++..+++. |..+++++ .+++..+.+++.|...++.....++. .....
T Consensus 19 ~~~~~~~g~--~VlI~ga~g~vG~~~iqla~~~g~~vi~~~--~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 19 EVGRLSPGE--RVLIHSATGGVGMAAVSIAKMIGARIYTTA--GSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYG 94 (183)
T ss_dssp TTSCCCTTC--EEEETTTTSHHHHHHHHHHHHHTCEEEEEE--SSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred HHhCCCCCC--EEEEECCCCCcccccchhhccccccceeee--cccccccccccccccccccCCccCHHHHHHHHhCCCC
Confidence 344567777 8888773 456777888766 89988844 34556677777665333332222221 23467
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
||+|+..-.- ..+.++.++|+++|+++..
T Consensus 95 ~d~v~d~~g~----------~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 95 VDVVLNSLAG----------EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEEEECCCT----------HHHHHHHHTEEEEEEEEEC
T ss_pred EEEEEecccc----------hHHHHHHHHhcCCCEEEEE
Confidence 9999975542 3677888999999998874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.12 E-value=0.086 Score=45.20 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=66.2
Q ss_pred HHhcCCCCCCceEEEECCCcc-HHHHHHhhC-CCEE-EEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTG-TFAARMREQ-NVTI-VSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG-~~a~~La~~-g~~V-~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sF 380 (467)
...++++++ +||=+|||.- ..+..+++. |..+ +. .|.++..++.+++.|...++....++.. +.++.|
T Consensus 22 ~~~~~~~g~--~VlI~G~G~iG~~~~~~ak~~g~~~v~~--~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 22 NALKVTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIA--VDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGV 97 (174)
T ss_dssp TTTCCCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEE--EESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred HhhCCCCCC--EEEEeCCCHHHhhhhhcccccccceeee--eccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCC
Confidence 344677777 8888999853 455555544 6654 44 5667777888888886555544333221 235679
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+|+-.-.- ...+.+..++++|+|.+++...
T Consensus 98 D~vid~~G~---------~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 98 NFALESTGS---------PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEEEECSCC---------HHHHHHHHHTEEEEEEEEECCC
T ss_pred cEEEEcCCc---------HHHHHHHHhcccCceEEEEEee
Confidence 998865443 3678899999999999988643
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.04 E-value=0.11 Score=44.02 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=66.4
Q ss_pred HHhcCCCCCCceEEEECC-C-ccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCC
Q 012235 309 DILAIKPGETRIGLDFGV-G-TGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDN 378 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGC-G-tG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~ 378 (467)
...++++++ +||=+|+ | .|..+..+++. | ..|+. .+.++..++.+.+.|...++.....++. ..++
T Consensus 21 ~~~~~~~g~--~vlV~G~~G~vG~~~~~~~~~~g~~~V~~--~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (170)
T d1jvba2 21 RKASLDPTK--TLLVVGAGGGLGTMAVQIAKAVSGATIIG--VDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESK 96 (170)
T ss_dssp HHTTCCTTC--EEEEETTTSHHHHHHHHHHHHHTCCEEEE--EESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred HHhCCCCCC--EEEEEeccccceeeeeecccccccccccc--cccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcc
Confidence 335677777 8999997 3 45556655554 5 57777 5556777778877774334433322221 1245
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.||+|+....- ...+....+.++|||.+++..+..
T Consensus 97 ~~d~vid~~g~---------~~~~~~a~~~l~~~G~iv~~G~~~ 131 (170)
T d1jvba2 97 GVDAVIDLNNS---------EKTLSVYPKALAKQGKYVMVGLFG 131 (170)
T ss_dssp CEEEEEESCCC---------HHHHTTGGGGEEEEEEEEECCSSC
T ss_pred cchhhhccccc---------chHHHhhhhhcccCCEEEEecccc
Confidence 69999876544 367888899999999998876543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.47 E-value=0.16 Score=43.63 Aligned_cols=99 Identities=11% Similarity=-0.005 Sum_probs=67.5
Q ss_pred HHHHhcCCCCCCceEEEECCCc--cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGT--GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGt--G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d 377 (467)
+.+..++++++ +||=.|+|. |..+..+++. |.+|+++ .-+++..+.+.+.+.-.++....+... ...
T Consensus 21 l~~~~~v~~G~--~VlV~ga~ggvG~~aiqlak~~Ga~vi~~--~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~ 96 (182)
T d1v3va2 21 LLEVCGVKGGE--TVLVSAAAGAVGSVVGQIAKLKGCKVVGA--AGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASP 96 (182)
T ss_dssp HHTTTCCCSSC--EEEESSTTSHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCT
T ss_pred HHHHhCCCCCC--EEEEEeCCCchhHHHHHHHHccCCEEEEe--CCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhc
Confidence 44455678887 888777754 5677777766 8999984 455666777777775444443322221 234
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.+|+|+-.-.- ..+.+..++|+|||.+++.-
T Consensus 97 ~Gvd~v~D~vG~----------~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 97 DGYDCYFDNVGG----------EFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp TCEEEEEESSCH----------HHHHHHGGGEEEEEEEEECC
T ss_pred CCCceeEEecCc----------hhhhhhhhhccCCCeEEeec
Confidence 569998865432 57889999999999998853
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.42 E-value=0.046 Score=53.55 Aligned_cols=90 Identities=17% Similarity=0.013 Sum_probs=61.4
Q ss_pred eEEEECCCccHHHHHHhh-CCC-EEEEEecCCCHHHHHHHHHc----CC-----------------ccEEEccCCCCc-c
Q 012235 320 IGLDFGVGTGTFAARMRE-QNV-TIVSTALNLGAPFNEMIALR----GL-----------------IPLYVTLNQRLP-F 375 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~-~g~-~V~gvdiDiS~~~l~~a~~r----g~-----------------i~~~~~d~~~Lp-f 375 (467)
+|||..||+|..+.+.+. .+. .|+. .|+++.+++.+.++ +. +.+.+.|+..+- .
T Consensus 48 ~vLD~~sasG~rsiRya~E~~~~~V~~--nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 48 IVLDALSATGIRGIRFALETPAEEVWL--NDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp EEEESSCTTSHHHHHHHHHSSCSEEEE--EESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred EEEEcCCCccHHHHHHHHhCCCCEEEE--ecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 899999999999997665 344 5666 77788888877643 21 122333332222 1
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
....||+|...- +... ..++....|.++.||.|.++
T Consensus 126 ~~~~fDvIDiDP----fGs~---~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 126 RHRYFHFIDLDP----FGSP---MEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp STTCEEEEEECC----SSCC---HHHHHHHHHHEEEEEEEEEE
T ss_pred hcCcCCcccCCC----CCCc---HHHHHHHHHHhccCCEEEEE
Confidence 245699988754 2222 36899999999999999996
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.11 Score=44.14 Aligned_cols=97 Identities=13% Similarity=-0.018 Sum_probs=66.3
Q ss_pred HHhcCCCCCCceEEEECCC--ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCc
Q 012235 309 DILAIKPGETRIGLDFGVG--TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCG--tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~s 379 (467)
+..++++++ +||=.|+| .|.++..+++. |.+|++ .+.+++..+.+++.|.-.++...-.++. ...+.
T Consensus 22 ~~~~l~~g~--~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~--~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 22 KTYEIKPDE--QFLFHAAAGGVGLIACQWAKALGAKLIG--TVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKK 97 (179)
T ss_dssp TTSCCCTTC--EEEESSTTBHHHHHHHHHHHHHTCEEEE--EESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred HHhCCCCCC--EEEEEccccccchHHHHHHHHhCCeEee--cccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCC
Confidence 334577777 88888665 46788888776 899998 6666777788888775444433222221 13567
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+..-.- ..+......|+|+|.+++..
T Consensus 98 ~d~v~d~~g~----------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 98 VRVVYDSVGR----------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp EEEEEECSCG----------GGHHHHHHTEEEEEEEEECC
T ss_pred eEEEEeCccH----------HHHHHHHHHHhcCCeeeecc
Confidence 8988865543 35678899999999987743
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.01 E-value=0.15 Score=43.36 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=63.6
Q ss_pred CCCCCCceEEEECCCcc-HHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTG-TFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG-~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDlVi 384 (467)
+++++ +||=+|+|.. ..+..+++. | ..+++ .|.++..++.+++-+...++....+... ...+.+|+|+
T Consensus 30 ~~~g~--~vli~GaG~vG~~~~~~a~~~g~~~vv~--~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vi 105 (172)
T d1h2ba2 30 LYPGA--YVAIVGVGGLGHIAVQLLKVMTPATVIA--LDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAM 105 (172)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHHCCCEEEE--EESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred cCCCC--EEEEeCCChHHHHHHHHHHhhcCccccc--ccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEE
Confidence 56777 8999999864 455566554 5 46666 5566677788877775445543322111 1235689888
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
-...- ...+....+.|++||++++..+
T Consensus 106 d~~g~---------~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 106 DFVGS---------QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp ESSCC---------HHHHHHGGGGEEEEEEEEECCC
T ss_pred EecCc---------chHHHHHHHHHhCCCEEEEEeC
Confidence 66654 3578899999999999998654
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.86 E-value=0.1 Score=50.65 Aligned_cols=55 Identities=20% Similarity=0.163 Sum_probs=40.4
Q ss_pred ccCCCCccCCCccceEEeccccccccch-------------------------------hhHHHHHHHHHhccCCCcEEE
Q 012235 368 TLNQRLPFFDNTMDLIHTTGFMDGWLDM-------------------------------LLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 368 ~d~~~Lpf~d~sFDlVis~~~L~h~~~~-------------------------------~~l~~~L~el~RvLKPGG~Li 416 (467)
+....--||+++.|+++|+.++ ||... .++..+|.-=.+-|+|||.++
T Consensus 128 GSFY~rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mv 206 (359)
T d1m6ex_ 128 GSFYGRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV 206 (359)
T ss_dssp SCSSSCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred CchhhhcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 3444444889999999999999 88521 134456777778889999999
Q ss_pred EEecccC
Q 012235 417 IDRFFCN 423 (467)
Q Consensus 417 I~~~~~~ 423 (467)
+..+...
T Consensus 207 l~~~gr~ 213 (359)
T d1m6ex_ 207 LTILGRR 213 (359)
T ss_dssp EEEEECS
T ss_pred EEEeccC
Confidence 9776553
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.63 E-value=0.11 Score=44.21 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=64.6
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-cCCCccceEEe
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-FFDNTMDLIHT 385 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-f~d~sFDlVis 385 (467)
...++++++ +||=+|+|. |.++..+++. |..++.+ +.+..-++.+++-|...++........ ...+.+|.|+-
T Consensus 24 ~~~~~~~G~--~VlI~GaG~vG~~a~qlak~~Ga~~i~~--~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 24 RHWQAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVVAF--TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp HHTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEE--ESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEE
T ss_pred HHhCCCCCC--EEEEeccchHHHHHHHHhhcccccchhh--ccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeee
Confidence 345678887 888899874 6677777765 8888874 445555677777775444433222111 22357998886
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
.-.- ...+....+.|+|||.+++...
T Consensus 100 ~~g~---------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 100 TVAA---------PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp CCSS---------CCCHHHHHTTEEEEEEEEECCC
T ss_pred eeec---------chhHHHHHHHHhcCCEEEEecc
Confidence 5432 1356777899999999988543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.23 E-value=0.29 Score=40.79 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=61.3
Q ss_pred HhcCCCCCCceEEEECCCcc-HHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccce
Q 012235 310 ILAIKPGETRIGLDFGVGTG-TFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDL 382 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG-~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDl 382 (467)
...+++++ +||=.|+|.- ..+..+++. |..|++ .+.++.-++.+++.|...++.....++. ..++.+|.
T Consensus 22 ~~~~~~g~--~vlv~G~G~iG~~a~~~a~~~g~~v~~--~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 22 VTGAKPGE--WVAIYGIGGLGHVAVQYAKAMGLNVVA--VDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp HHTCCTTC--EEEEECCSTTHHHHHHHHHHTTCEEEE--ECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEE
T ss_pred HhCCCCCC--EEEEeecccchhhhhHHHhcCCCeEec--cCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceE
Confidence 45677887 8888998864 445555544 788887 5667777888877774333322222111 12344455
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|++... ...+....+.|+|||.+++...
T Consensus 98 v~~~~~----------~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 98 VVTAVS----------KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp EESSCC----------HHHHHHHHHHEEEEEEEEECCC
T ss_pred EeecCC----------HHHHHHHHHHhccCCceEeccc
Confidence 543322 3578899999999999988543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=91.91 E-value=1.9 Score=38.88 Aligned_cols=139 Identities=11% Similarity=0.014 Sum_probs=83.2
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC-CCccceEEecccccc-------
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF-DNTMDLIHTTGFMDG------- 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h------- 391 (467)
+|||+=||-|.+...+.+.|++++ ...|+.+.+.+..+.+..-..+.+|...+... -...|+++....=..
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~-~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~~ 80 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRII-CANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGSL 80 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEE-EEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSCC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEE-EEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeeccccccccccccc
Confidence 589999999999999888898876 34667777777766665556678888777532 246899997532111
Q ss_pred --ccchh-hHHHHHHHHHhccCCCcEEEEEeccc-CCC---CHHHHHHHHHHcCceeeEEEEccC------CCCceEEEE
Q 012235 392 --WLDML-LLDFILFDWDRILRPGGLLWIDRFFC-NKK---DLDDYMYMFLQFRYKKHKWAISPK------SKDEVYLSA 458 (467)
Q Consensus 392 --~~~~~-~l~~~L~el~RvLKPGG~LiI~~~~~-~~~---~~~~~~~~i~~~Gf~~l~W~~~~k------~~devyl~a 458 (467)
..+.. .+-..+.++...++|.-.++=..... ... ..+.+...+..+||..-.+..... .+..+|+.+
T Consensus 81 ~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~GvPQ~R~R~fiv~ 160 (324)
T d1dcta_ 81 RGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIG 160 (324)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGGTCSBCCEEEEEEE
T ss_pred ccccccccchHHHHHHHHHhhCCceeeccccccccccccchhhHHHHhHHhhCCCccceeeeecccccCchhhceeeEee
Confidence 11221 11123345667778964433222222 111 233556667778886554444333 455677776
Q ss_pred E
Q 012235 459 L 459 (467)
Q Consensus 459 v 459 (467)
+
T Consensus 161 ~ 161 (324)
T d1dcta_ 161 F 161 (324)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=91.66 E-value=0.65 Score=38.72 Aligned_cols=85 Identities=16% Similarity=0.063 Sum_probs=59.4
Q ss_pred eEEEECCC--ccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVG--TGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCG--tG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|.=||+| -+.++..|.+.|++|+++ |.+++.++.+.+.+.+.....+.+.+ ...|+|+..-.. ..
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~--d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIilavp~------~~ 69 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGV--SRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLCTPI------QL 69 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEE--CSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEECSCH------HH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEE--ECCchHHHHHHHhhccceeeeecccc----cccccccccCcH------hh
Confidence 35567888 346788888889999994 56677788888888665444444332 457888854332 23
Q ss_pred HHHHHHHHHhccCCCcEEE
Q 012235 398 LDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~Li 416 (467)
.+.+++++...|+++-.++
T Consensus 70 ~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 70 ILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp HHHHHHHHGGGSCTTCEEE
T ss_pred hhhhhhhhhhhccccccee
Confidence 5688999999998888653
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=91.21 E-value=0.11 Score=48.11 Aligned_cols=84 Identities=10% Similarity=-0.041 Sum_probs=57.0
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHH---HH----HHHHc--------CCccEEEcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPF---NE----MIALR--------GLIPLYVTL 369 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~---l~----~a~~r--------g~i~~~~~d 369 (467)
..+.+.+.++.+...+|||.-||.|..+..++..|.+|+++ +-++.. ++ .+... ..+.++.+|
T Consensus 76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~i--Er~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRML--ERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEE--ECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEE--ccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 34555666666544479999999999999999999999994 444432 22 22211 126788888
Q ss_pred CCC-CccCCCccceEEeccccc
Q 012235 370 NQR-LPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 370 ~~~-Lpf~d~sFDlVis~~~L~ 390 (467)
... +.-....||+|+..-.+.
T Consensus 154 s~~~L~~~~~~~DvIYlDPMFp 175 (250)
T d2oyra1 154 SLTALTDITPRPQVVYLDPMFP 175 (250)
T ss_dssp HHHHSTTCSSCCSEEEECCCCC
T ss_pred HHHHHhccCCCCCEEEECCCCc
Confidence 544 333467799999877663
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=1.6 Score=39.91 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=80.2
Q ss_pred eEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCcc---CCCccceEEeccccccc-
Q 012235 320 IGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPF---FDNTMDLIHTTGFMDGW- 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf---~d~sFDlVis~~~L~h~- 392 (467)
+|+|+-||.|.+...|.+.|. +++ ...|+.+.+.+....+. ...++.+|+..+.. +...+|+++....=..+
T Consensus 4 kv~~lF~G~Gg~~~gl~~aG~~~~~~-~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~fS 82 (343)
T d1g55a_ 4 RVLELYSGVGGMHHALRESCIPAQVV-AAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEE-EEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred EEEEcCcCccHHHHHHHHcCCCCeEE-EEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeeccccccc
Confidence 689999999999988877776 333 23667777777766654 35677778776642 22368999975321111
Q ss_pred --------cchhhHHHHHHHHHhcc-----CCCcEEEEEeccc--CCCCHHHHHHHHHHcCceeeEEEEccC------CC
Q 012235 393 --------LDMLLLDFILFDWDRIL-----RPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKHKWAISPK------SK 451 (467)
Q Consensus 393 --------~~~~~l~~~L~el~RvL-----KPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l~W~~~~k------~~ 451 (467)
.+. ...++.++.|++ ||. +|++-.-.. .....+.+.+.++.+||..-....... .+
T Consensus 83 ~ag~~~~~~d~--r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vlna~dyGvPQ~R 159 (343)
T d1g55a_ 83 RIGRQGDMTDS--RTNSFLHILDILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSR 159 (343)
T ss_dssp ---------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCC
T ss_pred ccccccccccc--cccccchhhhhHhhhcCCCc-eeeeeccCCcccchhhHHHHhhhhccccccceeeeeccccCCcccc
Confidence 111 123445555554 575 344432211 222345788899999997543333332 45
Q ss_pred CceEEEEEe
Q 012235 452 DEVYLSALL 460 (467)
Q Consensus 452 devyl~avl 460 (467)
..+|+.+..
T Consensus 160 ~Rvfivg~r 168 (343)
T d1g55a_ 160 LRYFLIAKL 168 (343)
T ss_dssp CEEEEEEEE
T ss_pred eeEEEEEEe
Confidence 667777653
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.21 E-value=0.6 Score=40.08 Aligned_cols=100 Identities=9% Similarity=-0.011 Sum_probs=61.6
Q ss_pred HHHHhcCCCCCCceEEEEC--CCccHHHHHHhhC-CCE-EEEEecCCCHHHHHHH-HHcCCccEEEccCCCCc-----cC
Q 012235 307 ISDILAIKPGETRIGLDFG--VGTGTFAARMREQ-NVT-IVSTALNLGAPFNEMI-ALRGLIPLYVTLNQRLP-----FF 376 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIG--CGtG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a-~~rg~i~~~~~d~~~Lp-----f~ 376 (467)
+.+..+++++...+||=.| .|.|.++..+++. |.. |++ .+.+.+....+ .+-+...++....+.+. ..
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~--~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~ 97 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVG--ICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREAC 97 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEE--EESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHC
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceec--ccchHHHHhhhhhcccceEEeeccchhHHHHHHHHh
Confidence 4455567776433788876 5788999999985 765 444 33344444433 34454333333322221 12
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
++.+|+|+-.-.- ..+....++|+|||+++..
T Consensus 98 ~~GvDvv~D~vGg----------~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 98 PGGVDVYFDNVGG----------DISNTVISQMNENSHIILC 129 (187)
T ss_dssp TTCEEEEEESSCH----------HHHHHHHTTEEEEEEEEEC
T ss_pred ccCceEEEecCCc----------hhHHHHhhhccccccEEEe
Confidence 4569999854432 4688899999999999874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.55 E-value=1.2 Score=37.14 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=63.3
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-------cCCC
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------FFDN 378 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------f~d~ 378 (467)
+..++++++ +||=+|||. |.++..+++. | ..|++ .+.++..++.+++-|...++...-..-+ ..++
T Consensus 22 ~~~~~~~G~--tVlI~GaGGvG~~aiq~ak~~G~~~vi~--~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 22 NTAKLEPGS--VCAVFGLGGVGLAVIMGCKVAGASRIIG--VDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp TTTCCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEE--ECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HhhCCCCCC--EEEEecchhHHHHHHHHHHHHhcCceEE--EcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCC
Confidence 345678888 889888873 3555656655 6 45666 5666777888888775444433211111 1245
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.+|+|+-.-.- ...++....++++||.+++.
T Consensus 98 g~D~vid~~G~---------~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 98 GVDYSFECIGN---------VKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp CBSEEEECSCC---------HHHHHHHHHTBCTTTCEEEE
T ss_pred CCcEeeecCCC---------HHHHHHHHHhhcCCceeEEE
Confidence 69999876543 36788899999999887654
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.34 E-value=0.3 Score=46.29 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=38.4
Q ss_pred ceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc---CCccEEEccCCCC
Q 012235 319 RIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR---GLIPLYVTLNQRL 373 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r---g~i~~~~~d~~~L 373 (467)
..|||||.|.|.++..|.+. + ..+++++ ......+...+. +.+.++.+|...+
T Consensus 45 ~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE--~D~~~~~~L~~~~~~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 45 LKVLDLYPGVGIQSAIFYNKYCPRQYSLLE--KRSSLYKFLNAKFEGSPLQILKRDPYDW 102 (322)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCCSEEEEEC--CCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CeEEEECCCCCHHHHHHHhcCCCCEEEEEE--CCHHHHHHHHHhccCCCcEEEeCchhhc
Confidence 37999999999999999886 3 4788844 445565555443 3477888886543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.19 E-value=1.5 Score=37.06 Aligned_cols=103 Identities=11% Similarity=-0.019 Sum_probs=65.1
Q ss_pred HHhcCCCCCCceEEEECCCcc-HHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-------cCCC
Q 012235 309 DILAIKPGETRIGLDFGVGTG-TFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------FFDN 378 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG-~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------f~d~ 378 (467)
+..++++++ +||=+|||.. ..+..+++. |. .|++ +|.++..++.+.+.|...++.....+.. ..++
T Consensus 21 ~~a~~~~G~--~VlV~GaGgvGl~a~~~ak~~G~~~Vi~--~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 21 NTAKVTPGS--TCAVFGLGGVGFSAIVGCKAAGASRIIG--VGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp TTTCCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEE--ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HhhCCCCCC--EEEEECCCchhHHHHHHHHHcCCceeec--cCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCC
Confidence 344577887 8999999865 444555544 64 6777 6667788888988886555543222211 2245
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCC-CcEEEEEecccCC
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRP-GGLLWIDRFFCNK 424 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKP-GG~LiI~~~~~~~ 424 (467)
.+|.|+-.-.- ...+.+....+++ +|.+++.-.....
T Consensus 97 G~d~vid~~g~---------~~~~~~~~~~~~~~~G~~v~vG~~~~~ 134 (174)
T d1p0fa2 97 GVDYAVECAGR---------IETMMNALQSTYCGSGVTVVLGLASPN 134 (174)
T ss_dssp CBSEEEECSCC---------HHHHHHHHHTBCTTTCEEEECCCCCTT
T ss_pred CCcEEEEcCCC---------chHHHHHHHHHHHhcCceEEEEEecCc
Confidence 68888865444 2566666666655 6998886654433
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=89.03 E-value=2.7 Score=38.27 Aligned_cols=138 Identities=13% Similarity=0.070 Sum_probs=82.9
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC-CCccceEEeccc-----cc---
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF-DNTMDLIHTTGF-----MD--- 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~-d~sFDlVis~~~-----L~--- 390 (467)
+|||+=||-|.+...|.+.|++++. .+|+.+.+.+..+.+.. ...++|...+... -..+|+++.... ..
T Consensus 13 rv~~lFsG~Gg~~~gl~~aG~~~v~-a~e~d~~a~~~~~~N~~-~~~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~ag~~ 90 (327)
T d2c7pa1 13 RFIDLFAGLGGFRLALESCGAECVY-SNEWDKYAQEVYEMNFG-EKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQ 90 (327)
T ss_dssp EEEEETCTTTHHHHHHHHTTCEEEE-EECCCHHHHHHHHHHHS-CCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSCC
T ss_pred eEEEECccccHHHHHHHHCCCeEEE-EEeCCHHHHHHHHHHCC-CCCcCchhcCchhhcceeeeeecccccchhhhhhhh
Confidence 7899999999999999989988764 57777777777665432 2234666665422 246899997532 11
Q ss_pred -cccchh-hHHHHHHHHHhccCCCcEEEEEe-ccc----CCCCHHHHHHHHHHcCceeeEEEEccC------CCCceEEE
Q 012235 391 -GWLDML-LLDFILFDWDRILRPGGLLWIDR-FFC----NKKDLDDYMYMFLQFRYKKHKWAISPK------SKDEVYLS 457 (467)
Q Consensus 391 -h~~~~~-~l~~~L~el~RvLKPGG~LiI~~-~~~----~~~~~~~~~~~i~~~Gf~~l~W~~~~k------~~devyl~ 457 (467)
...++. .+-..+.++.+.++|.= |++-. ... .....+.+.+.++.+||..-.+..... .+..+|+.
T Consensus 91 ~g~~d~r~~l~~~~~~~i~~~kP~~-~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~R~fiv 169 (327)
T d2c7pa1 91 KGFEDSRGTLFFDIARIVREKKPKV-VFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMI 169 (327)
T ss_dssp CGGGSTTSCHHHHHHHHHHHHCCSE-EEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEE
T ss_pred cCCcccchhHHHHHHHHHhccCCcE-EecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHHcCCCchhhhheee
Confidence 111211 12334455666788963 44422 211 111244677889999997654444333 45557776
Q ss_pred EEe
Q 012235 458 ALL 460 (467)
Q Consensus 458 avl 460 (467)
++.
T Consensus 170 g~r 172 (327)
T d2c7pa1 170 CFR 172 (327)
T ss_dssp EEB
T ss_pred eec
Confidence 643
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=88.11 E-value=0.21 Score=42.64 Aligned_cols=94 Identities=17% Similarity=0.032 Sum_probs=58.8
Q ss_pred HhcCCCCCCceEEEECC-C-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEc-cCCCCccCCCccceEEe
Q 012235 310 ILAIKPGETRIGLDFGV-G-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVT-LNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGC-G-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~-d~~~Lpf~d~sFDlVis 385 (467)
...+++++ +||=.|+ | .|..+..+++. |.+|++++ .++...+.+.+.|.-..+.. +....-...+.+|+|+-
T Consensus 22 ~~~~~~g~--~VlI~ga~G~vG~~aiqlak~~G~~vi~~~--~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 22 RAQARPGE--KVLVQAAAGALGTAAVQVARAMGLRVLAAA--SRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp HTTCCTTC--EEEESSTTBHHHHHHHHHHHHTTCEEEEEE--SSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE
T ss_pred HhCCCCCC--EEEEEeccccchhhhhhhhccccccccccc--ccccccccccccccceeeehhhhhhhhhcccccccccc
Confidence 35677887 8888884 3 35777777766 89998854 45566677777664222221 10000122456999886
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
... ..+.+..+.|+|||.++..
T Consensus 98 ~~G-----------~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 98 VRG-----------KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp CSC-----------TTHHHHHTTEEEEEEEEEC
T ss_pred ccc-----------hhHHHHHHHHhcCCcEEEE
Confidence 321 1356678899999998874
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.88 E-value=0.4 Score=41.45 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=61.0
Q ss_pred CCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEcc---CCC-CccCCCccceEEe
Q 012235 313 IKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTL---NQR-LPFFDNTMDLIHT 385 (467)
Q Consensus 313 l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d---~~~-Lpf~d~sFDlVis 385 (467)
..+++ +||=-|+ |.|.++..|++. |.+|+++.- ++...+.+.+.|...++.-. .+. ....++.+|+|+-
T Consensus 29 ~~~g~--~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~--s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid 104 (176)
T d1xa0a2 29 TPERG--PVLVTGATGGVGSLAVSMLAKRGYTVEASTG--KAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVD 104 (176)
T ss_dssp CGGGC--CEEESSTTSHHHHHHHHHHHHTTCCEEEEES--CTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEE
T ss_pred CCCCC--EEEEEeccchHHHHHHHHHHHcCCceEEecC--chHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEE
Confidence 34455 7888875 456888888866 999988543 34456666666642222211 111 1234568998886
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+-.- ..+.+..++|+|||+++......
T Consensus 105 ~vgg----------~~~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 105 PVGG----------RTLATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp CSTT----------TTHHHHHHTEEEEEEEEECSCCS
T ss_pred cCCc----------hhHHHHHHHhCCCceEEEeeccc
Confidence 5443 36888999999999998865543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.75 E-value=0.17 Score=44.96 Aligned_cols=78 Identities=9% Similarity=-0.016 Sum_probs=48.9
Q ss_pred cEEEccCCCC--ccCCCccceEEeccccc----cccc---h----hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHH
Q 012235 364 PLYVTLNQRL--PFFDNTMDLIHTTGFMD----GWLD---M----LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDY 430 (467)
Q Consensus 364 ~~~~~d~~~L--pf~d~sFDlVis~~~L~----h~~~---~----~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~ 430 (467)
.++++|+..+ .++++++|+|+..-... .+.. . ..+...+.++.|+|+|||.+++... ......+
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~---~~~~~~~ 82 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT---PFNCAFI 82 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC---HHHHHHH
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC---chhhhhh
Confidence 4677876442 25689999999875431 1111 1 1134688899999999999876331 1122255
Q ss_pred HHHHHHcCceeeEE
Q 012235 431 MYMFLQFRYKKHKW 444 (467)
Q Consensus 431 ~~~i~~~Gf~~l~W 444 (467)
...+...||....+
T Consensus 83 ~~~~~~~g~~~~~~ 96 (256)
T d1g60a_ 83 CQYLVSKGMIFQNW 96 (256)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred hhhhhcccceeeee
Confidence 66778888865443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.42 E-value=1.8 Score=35.88 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=59.7
Q ss_pred eEEEECCCc-c-HHHHHHhhCCC--EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 320 IGLDFGVGT-G-TFAARMREQNV--TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
+|+=||||. | .++..|.+.|. +|++ .|.+++.++.+.+.+.+.....+.... .+...|+|+..-..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~--~D~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~dlIila~p~------ 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYG--YDINPESISKAVDLGIIDEGTTSIAKV--EDFSPDFVMLSSPV------ 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEE--ECSCHHHHHHHHHTTSCSEEESCGGGG--GGTCCSEEEECSCH------
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEE--EECChHHHHHHHHhhcchhhhhhhhhh--hccccccccccCCc------
Confidence 577799985 3 67778887774 6777 677788889998888765554443332 23467888866554
Q ss_pred hhHHHHHHHHHhccCCCcEE
Q 012235 396 LLLDFILFDWDRILRPGGLL 415 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~L 415 (467)
.....++.++...++++-.+
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii 92 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATV 92 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhhhhhccccccccc
Confidence 12457889999999887643
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.39 E-value=0.29 Score=43.96 Aligned_cols=81 Identities=16% Similarity=0.053 Sum_probs=49.6
Q ss_pred EEEccCCCC--ccCCCccceEEeccccc----cccc----hhhHHHHHHHHHhccCCCcEEEEEecccCC------CCHH
Q 012235 365 LYVTLNQRL--PFFDNTMDLIHTTGFMD----GWLD----MLLLDFILFDWDRILRPGGLLWIDRFFCNK------KDLD 428 (467)
Q Consensus 365 ~~~~d~~~L--pf~d~sFDlVis~~~L~----h~~~----~~~l~~~L~el~RvLKPGG~LiI~~~~~~~------~~~~ 428 (467)
++++|+... .++++++|+|+..-... .|.. .+.+...+.++.|+|||||.+++..-.... ....
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~ 86 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLIS 86 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHH
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhh
Confidence 556664432 35689999999876541 1111 122467889999999999999884322111 1122
Q ss_pred HHHHHHHHcCceeeEEE
Q 012235 429 DYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 429 ~~~~~i~~~Gf~~l~W~ 445 (467)
.+..++...|+....|.
T Consensus 87 ~~~~~~~~~~~~~~~~i 103 (279)
T d1eg2a_ 87 IISHMRQNSKMLLANLI 103 (279)
T ss_dssp HHHHHHHHCCCEEEEEE
T ss_pred HHHHHHhccCceeeeee
Confidence 45566777788655443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=85.84 E-value=3.1 Score=34.65 Aligned_cols=98 Identities=9% Similarity=-0.027 Sum_probs=61.7
Q ss_pred HHhcCCCCCCceEEEECCCccH-HHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEc-cCCCC------ccCCC
Q 012235 309 DILAIKPGETRIGLDFGVGTGT-FAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVT-LNQRL------PFFDN 378 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~-~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~-d~~~L------pf~d~ 378 (467)
...++++++ +||=+|+|.+. .+..+++. + ..|++ .+.++...+.+.+.+....+.. +..+. -..++
T Consensus 22 ~~~~vk~Gd--tVlV~GaGG~G~~~~~~~~~~g~~~Vi~--~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 22 KVAKVTQGS--TCAVFGLGGVGLSVIMGCKAAGAARIIG--VDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp TTTCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HhhCCCCCC--EEEEECCCCcHHHHHHHHHHcCCceEEe--ecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcC
Confidence 344678888 89999997543 34444433 4 57887 6666777888888876444433 22211 12346
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
.+|+|+-.... ...+......+++| |.+++..
T Consensus 98 G~D~vid~~G~---------~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 98 GVDFSFEVIGR---------LDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp CBSEEEECSCC---------HHHHHHHHHHBCTTTCEEEECS
T ss_pred CCCEEEecCCc---------hhHHHHHHHHHhcCCcceEEec
Confidence 79999876665 35677777788886 5655543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=85.36 E-value=0.81 Score=38.95 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=58.0
Q ss_pred eEEEEC--CCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEcc----CCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFG--VGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTL----NQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIG--CGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d----~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
.||=-| .|.|.++..|++. |.+|+++.- +++..+.+.+-|...++... ........+.+|+|+-.-.-
T Consensus 26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~--s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vgg--- 100 (167)
T d1tt7a2 26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTG--NREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGG--- 100 (167)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEES--SSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCT---
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCceEEEec--CHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCcH---
Confidence 577666 4566888888877 999998544 34445666666643333221 11112345679988765432
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
..+.+..+.|+|+|.+++.-..
T Consensus 101 -------~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 101 -------KQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp -------HHHHHHHTTEEEEEEEEECCCS
T ss_pred -------HHHHHHHHHhccCceEEEeecc
Confidence 5788999999999998885433
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=84.30 E-value=2.9 Score=35.30 Aligned_cols=100 Identities=14% Similarity=0.009 Sum_probs=62.8
Q ss_pred hcCCCCCCceEEEECCCcc-HHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-------cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGTG-TFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG-~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------f~d~sF 380 (467)
.++++++ +||=+|||.. ..+..+++. | ..|++ +|.+++.++.+.+.|...++...-.+.. ...+.+
T Consensus 25 ~~~~~g~--tVlI~G~GgvGl~ai~~ak~~G~~~Vi~--vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~ 100 (176)
T d1d1ta2 25 GKVKPGS--TCVVFGLGGVGLSVIMGCKSAGASRIIG--IDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNV 100 (176)
T ss_dssp SCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCC
T ss_pred hCCCCCC--EEEEECCCchhHHHHHHHHHcCCceEEE--ecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccc
Confidence 4567777 8999999864 445555544 6 57888 7777888999998886545443211111 234578
Q ss_pred ceEEeccccccccchhhHHHHHHHHH-hccCCCcEEEEEecccC
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWD-RILRPGGLLWIDRFFCN 423 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~-RvLKPGG~LiI~~~~~~ 423 (467)
|.|+-...- ...+.+.. .+++++|.+++......
T Consensus 101 d~vi~~~g~---------~~~~~~a~~~~~~~~G~~v~vG~~~~ 135 (176)
T d1d1ta2 101 GYTFEVIGH---------LETMIDALASCHMNYGTSVVVGVPPS 135 (176)
T ss_dssp CEEEECSCC---------HHHHHHHHTTSCTTTCEEEECSCCCT
T ss_pred eEEEEeCCc---------hHHHHHHHHHhhcCCeEEEEEEcccc
Confidence 988865544 23445444 45566699888654433
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.21 E-value=4.1 Score=32.34 Aligned_cols=105 Identities=8% Similarity=-0.023 Sum_probs=61.3
Q ss_pred eEEEECCCccHHHHHH----hhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc----CCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARM----REQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF----FDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~L----a~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf----~d~sFDlVis~~~L~h 391 (467)
+|+=+|+ |.++..+ .+.|..|+. +|.+++..+.+..+..+.++.+|..+..+ .-...|.+++...-
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~v--id~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~-- 75 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVL--IDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK-- 75 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEE--EESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC--
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcce--ecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCc--
Confidence 3555665 5554444 455999999 55557777777666446788888765432 23567888774322
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
+ ........+.+.+.+.-.+.. . .. ..+.+.++++|...
T Consensus 76 ---d-~~N~~~~~~~k~~~~~~iI~~--~--~~---~~~~~~l~~~G~d~ 114 (132)
T d1lssa_ 76 ---E-EVNLMSSLLAKSYGINKTIAR--I--SE---IEYKDVFERLGVDV 114 (132)
T ss_dssp ---H-HHHHHHHHHHHHTTCCCEEEE--C--SS---TTHHHHHHHTTCSE
T ss_pred ---H-HHHHHHHHHHHHcCCceEEEE--e--cC---HHHHHHHHHCCCCE
Confidence 1 122344556677777754332 1 11 13556777777643
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=84.21 E-value=2.7 Score=34.90 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=59.7
Q ss_pred HHhcCCCCCCceEEEECCCccHHH-HHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-------cCCC
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFA-ARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------FFDN 378 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a-~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------f~d~ 378 (467)
+..++++++ +||=+|+|.+... ..++.. +..|++ +|.++..++.+.+-|...++...-+... ...+
T Consensus 22 ~~a~~k~g~--~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~--~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 22 NTAKVEPGS--TCAVFGLGAVGLAAVMGCHSAGAKRIIA--VDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp TTTCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred HhhCCCCCC--EEEEEecCCccchHHHHHHHHhhchhee--ecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccC
Confidence 344677887 8999999986433 333333 456777 6667777888888886555543222211 1235
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEE
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWID 418 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~ 418 (467)
.+|+|+-.-.- ...+......+++| |.+++.
T Consensus 98 G~d~vid~~G~---------~~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 98 GVDFSLECVGN---------VGVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp CBSEEEECSCC---------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CcceeeeecCC---------HHHHHHHHHHhhCCCcceeEE
Confidence 68888765544 35677777777666 544443
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=84.06 E-value=1.9 Score=36.78 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=57.8
Q ss_pred HHhcCCCCCCceEEEECCC---ccHHHHHHhhC-CCEEEEEecC--CCHHHHHHHHHcCCccEEEccCCCCc--------
Q 012235 309 DILAIKPGETRIGLDFGVG---TGTFAARMREQ-NVTIVSTALN--LGAPFNEMIALRGLIPLYVTLNQRLP-------- 374 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCG---tG~~a~~La~~-g~~V~gvdiD--iS~~~l~~a~~rg~i~~~~~d~~~Lp-------- 374 (467)
+...+++++ +||=+++| .|..+..+++. |.+|+++.-. ..+...+.+++.|.-.++..+.....
T Consensus 22 ~~~~~~~g~--~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~ 99 (189)
T d1gu7a2 22 HYVKLTPGK--DWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKE 99 (189)
T ss_dssp SSSCCCTTT--CEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHH
T ss_pred HHhCCCCCC--EEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHH
Confidence 344577776 66766333 45677777776 9998875322 22334555666665344433211111
Q ss_pred ---cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 375 ---FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 375 ---f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
...+.+|+|+-.-. ...+....+.|+|+|+++..-
T Consensus 100 ~~~~~g~~vdvv~D~vg----------~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 100 WIKQSGGEAKLALNCVG----------GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHHTCCEEEEEESSC----------HHHHHHHHHTSCTTCEEEECC
T ss_pred HHhhccCCceEEEECCC----------cchhhhhhhhhcCCcEEEEEC
Confidence 12356888884322 135677889999999988743
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=81.63 E-value=1.1 Score=40.50 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=40.9
Q ss_pred HHHHHhc--CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc
Q 012235 306 LISDILA--IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR 360 (467)
Q Consensus 306 ~I~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r 360 (467)
++..++. ..+++ .|||.=||+|+.+.+..+.|...+| +|+++...+.+.+|
T Consensus 239 L~~rlI~~~s~~gd--iVlDpF~GSGTT~~AA~~lgR~~Ig--~El~~~y~~~a~~R 291 (320)
T d1booa_ 239 LPEFFIRMLTEPDD--LVVDIFGGSNTTGLVAERESRKWIS--FEMKPEYVAASAFR 291 (320)
T ss_dssp HHHHHHHHHCCTTC--EEEETTCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHGG
T ss_pred HHHHhhhhcccCCC--EEEecCCCCcHHHHHHHHcCCcEEE--EeCCHHHHHHHHHH
Confidence 4444443 34566 9999999999999999999999999 77778888888776
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=80.80 E-value=1.6 Score=33.70 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=44.1
Q ss_pred ceEEEEC-CCcc--HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFG-VGTG--TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIG-CGtG--~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
+++.=|| ||+| .+|..|.++|+.|.|.|...++.+ +...+.| +.+..+..... . ...|+|+.+.++
T Consensus 9 ~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~-~~L~~~G-i~v~~g~~~~~-i--~~~d~vV~S~AI 77 (96)
T d1p3da1 9 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVT-QRLAQAG-AKIYIGHAEEH-I--EGASVVVVSSAI 77 (96)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHH-HHHHHTT-CEEEESCCGGG-G--TTCSEEEECTTS
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhh-hHHHHCC-CeEEECCcccc-C--CCCCEEEECCCc
Confidence 4677776 4555 667888888999999888776554 4445566 45555543322 1 347888888776
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=80.19 E-value=1.3 Score=37.95 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=56.9
Q ss_pred eEEEEC--CCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC--CccCCCccceEEeccccccccc
Q 012235 320 IGLDFG--VGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR--LPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIG--CGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~--Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.||=.| .|.|.++..+++. |.+|+++ .-+++..+.+.+.|...++.-+... -......+|.|+- .+.
T Consensus 34 ~vlV~gasGGVG~~aiQlAk~~Ga~Via~--~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD-~Vg----- 105 (177)
T d1o89a2 34 EIVVTGASGGVGSTAVALLHKLGYQVVAV--SGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAID-TVG----- 105 (177)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCCEEEE--ESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEE-SSC-----
T ss_pred cEEEEEccccchHHHHHHHHHcCCCeEEE--ecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEE-Ecc-----
Confidence 566555 3356788888876 9999984 4455666667666643333332211 1234566787752 222
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
...+.+..+.|+++|+++.....
T Consensus 106 ----g~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 106 ----DKVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp ----HHHHHHHHHTEEEEEEEEECCCT
T ss_pred ----hHHHHHHHHHhccccceEeeccc
Confidence 35788999999999999886443
|